Citrus Sinensis ID: 023491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHccHHHHHcccccccccHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
maspaapankIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSalfdvnrlielnpsseVYQNLQARLKTQlslapipeseaefeeeeEEEEEEinqagpygieeeegksdekedavapvikmdnkgepevkapktpgingnsepgikqraepkrtnineataldhtskkptvqdskgwqaipkpkghstldyarwdrveddsseddddddeeesqpqyrfRVRTVGV
Flexible Loop (DISEMBL)
maspaapankierAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPESEAefeeeeeeeeeeinqagpygieeeegksdeKEDAVAPvikmdnkgepevkapktpgingnsepgikqraepkrtnineataldhtskkptvqdskgwqaipkpkghstldyarwDRVEDDsseddddddeeesqpqyrfrvrtvgv
Low Complexity Region (SEG)
MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPeseaefeeeeeeeeeeINQAGPYGIeeeegksdekedAVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAIPKPKGHSTLDYARWDRVeddsseddddddeeesQPQYRFRVRTVGV
Disordered region (IsUnstruct)
***************QLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL********************************************************************************************************************************************************************
Disordered Region (DISOPRED)
****A*P**KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA********************************************************************************************************************************************************YRFRVRTVGV
Disordered Region (DISEMBL)
*********KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI********************AGPYGI************AVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDH***********GWQAIPKPKGHSTLDYARWDRV*****************PQYRFRVRTVGV
Disordered Region (DISPRO)
**S*AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKE******************************************************************A******H*************************ESQPQYRFRVRTVGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPxxxxxxxxxxxxxxxxxxxxxAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q32PZ3	944	Protein unc-45 homolog A	yes	no	0.362	0.108	0.401	3e-14
Q99KD5	944	Protein unc-45 homolog A	yes	no	0.362	0.108	0.401	3e-14
Q5RAP0	929	Protein unc-45 homolog A	yes	no	0.362	0.109	0.392	3e-13
Q9H3U1	944	Protein unc-45 homolog A	yes	no	0.398	0.118	0.376	3e-13
Q07617	926	Sperm-associated antigen	no	no	0.469	0.142	0.323	3e-12
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.427	0.217	0.356	1e-11
Q15785	309	Mitochondrial import rece	no	no	0.395	0.359	0.324	1e-10
A4K2V0	309	Mitochondrial import rece	no	no	0.395	0.359	0.324	1e-10
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.370	0.186	0.362	4e-10
Q3KRD5	309	Mitochondrial import rece	no	no	0.338	0.307	0.346	4e-10

>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73
            ++L++ G YE AL  YT+ALS+    Q +  LH NRAAC+LKL D+ KA  E +  +E 
Sbjct: 28  GNELFKCGDYEGALTAYTQALSLGATPQDQAILHRNRAACHLKLEDYSKAESEASKAIEK 87

Query: 74  DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
           D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct: 88  DGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQ 129

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.
Rattus norvegicus (taxid: 10116)

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 60/102 (58%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73
            ++L++ G YE AL  YT+ALS+    Q +  LH NRAAC+LKL D+ KA  E +  +E 
Sbjct: 28  GNELFKCGDYEGALTAYTQALSLGATPQDQAILHRNRAACHLKLEDYSKAESEASKAIEK 87

Query: 74  DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
           D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct: 88  DGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQ 129

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73
            ++L++ G Y  AL  YT+AL +    Q +  LH NRAACYLKL D+ KA  E +  +E 
Sbjct: 13  GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACYLKLEDYDKAETEASKAIEK 72

Query: 74  DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
           D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct: 73  DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 114

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 4   PAAP-ANKIER----AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH 58
           PA P A+ +E+     ++L++ G Y  AL  YT+AL +    Q +  LH NRAAC+LKL 
Sbjct: 13  PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE 72

Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
           D+ KA  E +  +E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct: 73  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 129

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E  +Q   D  Y++AL  Y+E L   KI  ++ A+++NRA CYLKL  F++A ++C   L
Sbjct: 628 EEGNQCVNDKNYKDALSKYSECL---KINNKECAIYTNRALCYLKLCQFEEAKQDCDQAL 684

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ--LSLAP 129
           +L   +  A   RA     LK Y  +L D+N++I L+PS      ++A+++ +    L  
Sbjct: 685 QLADGNVKAFYRRALAHKGLKNYQKSLIDLNKVILLDPSI-----IEAKMELEEVTRLLN 739

Query: 130 IPESEAEFEEEEEEEEEEINQA 151
           + +  A F +E+E  + EI + 
Sbjct: 740 LKDKTAPFNKEKERRKIEIQEV 761

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 12/132 (9%)

Query: 6   APANKIERAHQLYRDG-------RYEEALGF--YTEALSVAKIKQQK---IALHSNRAAC 53
           A + K E  +  ++ G       RYE+A+ F  Y  + S  + KQ K   +A + N AAC
Sbjct: 399 AASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAAC 458

Query: 54  YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113
            LKL D+K+A + CT VLEL+  +  AL  RAQ  + L + + A FDV + +E++P++  
Sbjct: 459 KLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNRE 518

Query: 114 YQNLQARLKTQL 125
            +  Q RLK ++
Sbjct: 519 VKLEQKRLKEKM 530

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E  ++L + G +++A+  Y+E+L  + ++    A +SNRA CYL L  + +A ++CT  L
Sbjct: 198 EEGNELVKKGNHKKAIEKYSESLLCSNLES---ATYSNRALCYLVLKQYTEAVKDCTEAL 254

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
           +LD  +  A   RAQ    LK+Y S+  D++ L+++ P +   Q L+  +K  L
Sbjct: 255 KLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Homo sapiens (taxid: 9606)

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E  ++L + G +++A+  Y+E+L  + ++    A +SNRA CYL L  + +A ++CT  L
Sbjct: 198 EEGNELVKKGNHKKAIEKYSESLLCSNLES---ATYSNRALCYLVLKQYTEAVKDCTEAL 254

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
           +LD  +  A   RAQ    LK+Y S+  D++ L+++ P +   Q L+  +K  L
Sbjct: 255 KLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 12/116 (10%)

Query: 6   APANKIERAHQLYRDG-------RYEEALGFYTEALSVA-----KIKQQKIALHSNRAAC 53
           A   K E  + L++ G       RYE+A  F     S +     + KQ KI  + N AAC
Sbjct: 400 AAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAAC 459

Query: 54  YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            LKL D+K+A + CT VLELD  +  AL  RAQ    L +   A  D+ + +E++P
Sbjct: 460 KLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDP 515

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E  ++L + G +++A+  Y+E+L  + ++    A +SNRA C+L L  +K+A ++CT  L
Sbjct: 198 EEGNELVKKGNHKKAIEKYSESLLFSSLES---ATYSNRALCHLVLKQYKEAEKDCTEAL 254

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
           +LD  +  A   RAQ    LK+Y S+L D++ L+++ P
Sbjct: 255 KLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEP 292

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255583210	299	heat shock protein 70 (HSP70)-interactin	0.960	0.903	0.647	7e-87
255544654	293	heat shock protein 70 (HSP70)-interactin	0.953	0.914	0.645	6e-83
224081437	256	predicted protein [Populus trichocarpa]	0.882	0.968	0.665	2e-81
356525764	281	PREDICTED: sperm-associated antigen 1-li	0.957	0.957	0.633	6e-78
449464646	289	PREDICTED: uncharacterized protein LOC10	0.982	0.955	0.672	2e-77
356556991	280	PREDICTED: uncharacterized protein LOC10	0.957	0.960	0.649	2e-76
255646441	280	unknown [Glycine max]	0.957	0.960	0.649	2e-76
359494499	308	PREDICTED: uncharacterized protein LOC10	0.925	0.844	0.582	7e-73
18405682	272	tetratricopeptide repeat-containing prot	0.889	0.919	0.575	9e-70
297853350	266	tetratricopeptide repeat-containing prot	0.889	0.939	0.559	1e-66

>gi|255583210|ref|XP_002532370.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223527926|gb|EEF30013.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  326 bits (835), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/306 (64%), Positives = 229/306 (74%), Gaps = 36/306 (11%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           MAS  AP+NKIE AHQ+YRDG+YEEALGFYTEAL++AK K Q IALHSNRAACYLKLHDF
Sbjct: 1   MAS--APSNKIEMAHQIYRDGQYEEALGFYTEALAMAKTKAQTIALHSNRAACYLKLHDF 58

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
           KKAAEECTSVLELD+NH GALMLRAQTLVTLK+Y+SALFDVNRL+ELNPSSEVY NL+ R
Sbjct: 59  KKAAEECTSVLELDHNHAGALMLRAQTLVTLKDYHSALFDVNRLMELNPSSEVYHNLETR 118

Query: 121 LKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKG 180
           L+TQL+LAPIPESEAE EEEEE++E E     P G+EEE+   + KED  AP+I  D K 
Sbjct: 119 LRTQLALAPIPESEAELEEEEEKDEIE-----PCGLEEEQ--RNRKED--APIIWTDKKI 169

Query: 181 EP------EVKAPKTPGINGNSEPGIKQR------------------AEPKRTNINEATA 216
           EP      EV  PK P +NG+S    +QR                   EP++T   E  A
Sbjct: 170 EPSKTTDAEVIVPKVPNVNGSSAVSREQRFETRKTIAAEVIAQAQRKVEPRKTLAAEVIA 229

Query: 217 LDHTSKKPTVQDSKGWQAIPKPKGHSTLDYARWDRV-EDDSSEDDDDDDEEESQPQYRFR 275
                K+ + Q+SKGWQAIPKPKGHS LDY RWDRV +D S +D+DDDDEE+SQP+YRFR
Sbjct: 230 QAQRKKESSYQNSKGWQAIPKPKGHSALDYGRWDRVEDDSSEDDEDDDDEEQSQPKYRFR 289

Query: 276 VRTVGV 281
           VRTVGV
Sbjct: 290 VRTVGV 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544654|ref|XP_002513388.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223547296|gb|EEF48791.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 191/296 (64%), Positives = 222/296 (75%), Gaps = 28/296 (9%)

Query: 5   AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAA 64
           +AP+NKIE AHQ+YRDG+YE ALGFYTEALS+AK K Q IALHSNRAACYLKLHDFKKAA
Sbjct: 3   SAPSNKIEMAHQIYRDGKYEAALGFYTEALSMAKTKAQTIALHSNRAACYLKLHDFKKAA 62

Query: 65  EECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124
           EECTSVLELD+NH GALMLRAQTLVTLK+Y+SALFDVNRL+ LNPSSEVY+NL+ RL+TQ
Sbjct: 63  EECTSVLELDHNHAGALMLRAQTLVTLKDYHSALFDVNRLMGLNPSSEVYRNLETRLRTQ 122

Query: 125 LSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGEP-- 182
           L+LAPIPESEAE EEEEE++E E     P G+EEE G  D K D  AP+I  D K EP  
Sbjct: 123 LALAPIPESEAELEEEEEKDEIE-----PCGLEEEHG--DGKAD--APMIGTDKKTEPSR 173

Query: 183 ----EVKAPKTPGIN------------GNSEPGIKQRAEPKRTNINEATALDHTSKKPTV 226
               EV  PK   ++              +    +++ EP++T   E  A     K+ + 
Sbjct: 174 TTDAEVIVPKISNVSREHRFETRKTIAAEAIAQAQRKVEPRKTLAAEVIAQAQRKKESSD 233

Query: 227 QDSKGWQAIPKPKGHSTLDYARWDRV-EDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
           Q SKGWQ+IPKPKGHS LDYARWDRV +D S +DDDDDDEE+SQPQYRFRVRTVGV
Sbjct: 234 QHSKGWQSIPKPKGHSALDYARWDRVEDDSSEDDDDDDDEEQSQPQYRFRVRTVGV 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081437|ref|XP_002306410.1| predicted protein [Populus trichocarpa] gi|222855859|gb|EEE93406.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 209/281 (74%), Gaps = 33/281 (11%)

Query: 8   ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEEC 67
           ANKIE AHQ+YRDG YEEALGFYTEALS+AK K QKIALHSNRAACYLKLHDFKKAAEEC
Sbjct: 2   ANKIETAHQMYRDGNYEEALGFYTEALSMAKTKPQKIALHSNRAACYLKLHDFKKAAEEC 61

Query: 68  TSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127
           TSVLELD+NHTGALMLRAQTLVTLKEY SALFDVNRL+ELNPSSEVYQNL+ARL+TQLSL
Sbjct: 62  TSVLELDHNHTGALMLRAQTLVTLKEYTSALFDVNRLMELNPSSEVYQNLEARLRTQLSL 121

Query: 128 APIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGEP----- 182
           APIPESE E EEEEE+E E      P G         E +DA   ++ ++ K EP     
Sbjct: 122 APIPESEVELEEEEEDENEA----EPCG-------QVEIQDAATALVDINQKNEPCQTTN 170

Query: 183 --EVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAIPKPKG 240
             EV   KTP I   S     +++EP++T   E              +S GWQAIPKPKG
Sbjct: 171 DAEVIVHKTPYIKKISVESTDKKSEPRKTIAAE--------------NSNGWQAIPKPKG 216

Query: 241 HSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
           HSTLDYARWDRVE D S +DDD++EE+SQPQYRFRVRT GV
Sbjct: 217 HSTLDYARWDRVE-DGSSEDDDEEEEDSQPQYRFRVRTFGV 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525764|ref|XP_003531493.1| PREDICTED: sperm-associated antigen 1-like [Glycine max]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 183/289 (63%), Positives = 218/289 (75%), Gaps = 20/289 (6%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           MA+P    N+IERAHQ+YRDGRYEEALGFYTEA+++AK   QKIALHSNRAACYLKLHDF
Sbjct: 1   MAAP----NRIERAHQMYRDGRYEEALGFYTEAIAMAKTNPQKIALHSNRAACYLKLHDF 56

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
           KKAAEECTSVLELD+ H+GALMLRAQTLVTLKEY+SALFDVNRL+ELNPSSEVYQNLQAR
Sbjct: 57  KKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLQAR 116

Query: 121 LKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKG 180
           LKTQL+L PIPESE E  EE+E+EE E+       I + E ++ E  +  + +  +    
Sbjct: 117 LKTQLALTPIPESEEEEFEEQEDEEPEV-------ISQRENENKEMGEKYSSISNIGTDQ 169

Query: 181 EPEVK--------APKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGW 232
           + E+         AP    +  +S+ G  Q  EPK++   +A A    +K+ T Q SKGW
Sbjct: 170 KVELGKGIIIADCAPHETDLKFSSKQGRNQNNEPKKSTA-DAIAPKAPNKESTEQHSKGW 228

Query: 233 QAIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
           Q IPKPKGHS LDYARWD VEDDSS+DDD+D++EES PQYRFRVRTVGV
Sbjct: 229 QTIPKPKGHSALDYARWDSVEDDSSDDDDEDEDEESLPQYRFRVRTVGV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464646|ref|XP_004150040.1| PREDICTED: uncharacterized protein LOC101219918 [Cucumis sativus] gi|449502510|ref|XP_004161661.1| PREDICTED: uncharacterized protein LOC101229836 [Cucumis sativus]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 195/290 (67%), Positives = 213/290 (73%), Gaps = 14/290 (4%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           M    AP NKIERAHQ+YR+G Y EAL FYTEALS+AK K Q+IALHSNRAAC+LKLHDF
Sbjct: 1   MPMATAPLNKIERAHQMYREGLYAEALRFYTEALSMAKTKSQRIALHSNRAACHLKLHDF 60

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
            KAAEECT VLELD+ HTGALMLRAQTLVTLKEY+SALFDVNRLIELNPSSEVYQNL  R
Sbjct: 61  NKAAEECTWVLELDHKHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHTR 120

Query: 121 LKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEE--EGKSDEKEDAVAPVIKMDN 178
           LKTQLSLAPIPESEAE  EEEEEEEE +++   Y   E+  EG    KE  V P  +   
Sbjct: 121 LKTQLSLAPIPESEAE-LEEEEEEEEYVDEFNEYAANEKCIEG----KEYVVTPTFEQVQ 175

Query: 179 KGEP-----EVKAPKTPGINGNSEP-GIKQRAEPKRTNINEATALDHTSKK-PTVQDSKG 231
           K E      E K  KT G  G SE   + Q+ E K T  +E  A     KK  T Q   G
Sbjct: 176 KPEHNCNLIEKKIIKTQGNCGLSEVERVNQKVEVKLTAKSEVVAPQGQIKKGTTTQGPNG 235

Query: 232 WQAIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
           WQ IPKPKGHS LDYARWDRVEDDSSEDDDDD+EE+S PQ+RFRVRTVGV
Sbjct: 236 WQTIPKPKGHSALDYARWDRVEDDSSEDDDDDEEEDSGPQFRFRVRTVGV 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556991|ref|XP_003546802.1| PREDICTED: uncharacterized protein LOC100792046 [Glycine max]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 220/288 (76%), Gaps = 19/288 (6%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           MA+P    N+IERAHQ+YRDG YEEALGFYTEA+++AK   QKIALHSNRAACYLKLHDF
Sbjct: 1   MAAP----NRIERAHQMYRDGSYEEALGFYTEAIALAKTNPQKIALHSNRAACYLKLHDF 56

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
           KKAAEECTSVLELD+ H+GALMLRAQTLVTLKEY+SALFDV+RL+ELNPSSEVYQNLQAR
Sbjct: 57  KKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVSRLLELNPSSEVYQNLQAR 116

Query: 121 LKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEG-------KSDEKEDAVAPV 173
           LKTQL+LAPIPESE EF+E+E+EE E I+Q      E  E        ++D+K +    +
Sbjct: 117 LKTQLALAPIPESEEEFQEQEDEEPEVISQGENENEEMGEKYSSISNIRTDQKVELGKGI 176

Query: 174 IKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQ 233
           I  D        AP    +  +S+ G  Q  EPK++ I +A A    +++ T Q SKGWQ
Sbjct: 177 IIADC-------APHETDLKFSSKQGRNQNHEPKKS-IADAIAPKAPNRETTEQHSKGWQ 228

Query: 234 AIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
            IPKPKGHS LDYARWD VEDDSS+DDDDD++EES PQYRFRVRTVGV
Sbjct: 229 TIPKPKGHSALDYARWDSVEDDSSDDDDDDEDEESLPQYRFRVRTVGV 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646441|gb|ACU23699.1| unknown [Glycine max]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/288 (64%), Positives = 220/288 (76%), Gaps = 19/288 (6%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           MA+P    N+IERAHQ+YRDG YEEALGFYTEA+++AK   QKIALHSNRAACYLKLHDF
Sbjct: 1   MAAP----NRIERAHQMYRDGSYEEALGFYTEAIALAKTNPQKIALHSNRAACYLKLHDF 56

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
           KKAAEECTSVLELD+ H+GALMLRAQTLVTLKEY+SALFDV+RL+ELNPSSEVYQNLQAR
Sbjct: 57  KKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVSRLLELNPSSEVYQNLQAR 116

Query: 121 LKTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEG-------KSDEKEDAVAPV 173
           LKTQL+LAPIPESE EF+E+E+EE E I+Q      E  E        ++D+K +    +
Sbjct: 117 LKTQLALAPIPESEEEFQEQEDEEPEVISQGENENEEMGEKCSSIFNIRTDQKVELGKGI 176

Query: 174 IKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQ 233
           I  D        AP    +  +S+ G  Q  EPK++ I +A A    +++ T Q SKGWQ
Sbjct: 177 IIADC-------APHETDLKFSSKQGRNQNHEPKKS-IADAIAPKAPNRETTEQHSKGWQ 228

Query: 234 AIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQPQYRFRVRTVGV 281
            IPKPKGHS LDYARWD VEDDSS+DDDDD++EES PQYRFRVRTVGV
Sbjct: 229 TIPKPKGHSALDYARWDSVEDDSSDDDDDDEDEESLPQYRFRVRTVGV 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494499|ref|XP_002266045.2| PREDICTED: uncharacterized protein LOC100244491 [Vitis vinifera]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 209/304 (68%), Gaps = 44/304 (14%)

Query: 9   NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECT 68
           NKIERAHQ+YR+G +EEALGFYTEAL++AK + QKIALHSNRAACYLKLHDF KAA+ECT
Sbjct: 14  NKIERAHQMYREGLHEEALGFYTEALAMAKTRAQKIALHSNRAACYLKLHDFDKAAKECT 73

Query: 69  SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128
           SVLELD+ HTGALMLRAQTLVTLKEY+SALFDV RL+ELNPSSEVY+NL+ARLKTQLSLA
Sbjct: 74  SVLELDHKHTGALMLRAQTLVTLKEYHSALFDVKRLMELNPSSEVYRNLEARLKTQLSLA 133

Query: 129 PIP--------ESEAEFEEEEEEEEEEINQAGPYGI------------------EEEEGK 162
           PIP        E E E ++E E E +E    G   +                  +E E K
Sbjct: 134 PIPESEAELEEEEEDEDKDEAEPERDEAKAQGDTSLPESEEEREGEEEEEDKDEDETELK 193

Query: 163 SDEKEDAVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHT-S 221
            DE ++ V   ++ D K + +V               I Q+AEP+ T  N       T S
Sbjct: 194 RDEAQEQVDKNLEEDKKDQIDV-------------VRIDQKAEPETTTTNVRVYAPQTLS 240

Query: 222 KKPTV-QDSKGWQAIPKPKGHSTLDYARWDRV---EDDSSEDDDDDDEEESQPQYRFRVR 277
           KK +  QDSKGWQAIPKPKGHS LDY+RWDRV     +  +DDD+DD+EESQPQYRFR+R
Sbjct: 241 KKDSSEQDSKGWQAIPKPKGHSNLDYSRWDRVEDDSSEDDDDDDEDDDEESQPQYRFRLR 300

Query: 278 TVGV 281
           TVGV
Sbjct: 301 TVGV 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405682|ref|NP_564708.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|21592954|gb|AAM64904.1| unknown [Arabidopsis thaliana] gi|109946435|gb|ABG48396.1| At1g56090 [Arabidopsis thaliana] gi|110738830|dbj|BAF01338.1| hypothetical protein [Arabidopsis thaliana] gi|332195220|gb|AEE33341.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  269 bits (688), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 172/299 (57%), Positives = 201/299 (67%), Gaps = 49/299 (16%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           MAS    + K+E+ HQLYRDG+Y+EAL FYTEAL+ AK K QKIALHSNRAACYLKLHDF
Sbjct: 1   MASAVTASGKVEKGHQLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDF 60

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
            KAAEECT VLELD  H+GALMLRAQTLVTLKEY SALFDV RL+ELNP SEVYQNL+AR
Sbjct: 61  IKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSALFDVTRLMELNPDSEVYQNLEAR 120

Query: 121 LKTQLSLAPIPESEAEFEEE---EEEEEEEINQAGPYGIEEEEGKSDEK----------- 166
           L+TQLSLAPIPESEAE EEE   E++ E++ ++    G+ E   K  E            
Sbjct: 121 LRTQLSLAPIPESEAELEEESDVEQDAEDKESREVELGVNERRDKRFESVVSLRRDLETT 180

Query: 167 -EDAVAPVIKMDNKGEPEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPT 225
            EDA+       NKG  EV APKTP +   +   +                         
Sbjct: 181 GEDAI-------NKG--EVVAPKTPEVREQNSKEVPMSG--------------------- 210

Query: 226 VQDSKGWQAIPKPKGHSTLDYARWDRVEDDSSEDDDDDDEEESQ---PQYRFRVRTVGV 281
            + S  WQAIPKPKGHSTLDYARW+ VEDDSSE++DD+D ++S    PQYRFRV+TVGV
Sbjct: 211 -KQSNAWQAIPKPKGHSTLDYARWNTVEDDSSEEEDDEDSDDSDESPPQYRFRVKTVGV 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853350|ref|XP_002894556.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340398|gb|EFH70815.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/284 (55%), Positives = 201/284 (70%), Gaps = 34/284 (11%)

Query: 8   ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEEC 67
           + K+E+ HQLYRDG+Y+EAL F+TEAL  A+ K QKIALHSNRAAC+LKL+DF KAAEEC
Sbjct: 3   SGKVEKGHQLYRDGKYKEALLFFTEALMAAEAKPQKIALHSNRAACFLKLNDFNKAAEEC 62

Query: 68  TSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127
           T VLELD  H+GAL LRAQTLVTLKEY SALFDV RL+ELNP S+VYQNL+ARL+TQLSL
Sbjct: 63  TCVLELDQKHSGALSLRAQTLVTLKEYQSALFDVTRLMELNPDSKVYQNLEARLRTQLSL 122

Query: 128 APIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIK-MDNKGE----- 181
           APIPE E E + EE++ +++ ++   +G+ E   + D++ ++V  + + ++  GE     
Sbjct: 123 APIPEDEEESDAEEQDTQDKKSRQVEFGVHE---RRDQRFESVVSIRRHIETLGEDADIN 179

Query: 182 -PEVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAIPKPKG 240
             EV APKTP              E +  N  E   L       + + S  WQAIPKPKG
Sbjct: 180 KGEVVAPKTP--------------EVREQNSKEVPLL-------SGKQSNAWQAIPKPKG 218

Query: 241 HSTLDYARWDRVEDDSSEDDDDDDEEESQ---PQYRFRVRTVGV 281
           HSTLDYARWD VEDDSSE++DD+D ++S    PQYRFRV+TVGV
Sbjct: 219 HSTLDYARWDTVEDDSSEEEDDEDSDDSDESPPQYRFRVKTVGV 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2205225	272	AT1G56090 [Arabidopsis thalian	0.466	0.481	0.793	3.2e-68
MGI|MGI:2142246	944	Unc45a "unc-45 homolog A (C. e	0.395	0.117	0.383	3.6e-15
RGD|1305357	944	Unc45a "unc-45 homolog A (C. e	0.395	0.117	0.383	3.6e-15
UNIPROTKB|A5PKJ5	929	UNC45A "Uncharacterized protei	0.395	0.119	0.378	7.3e-15
UNIPROTKB|F1RMH7	944	UNC45A "Uncharacterized protei	0.419	0.125	0.352	1.2e-14
UNIPROTKB|Q9H3U1	944	UNC45A "Protein unc-45 homolog	0.434	0.129	0.354	2e-14
UNIPROTKB|F1P0Z6	839	F1P0Z6 "Uncharacterized protei	0.370	0.123	0.375	2.2e-14
UNIPROTKB|B6GVA2	261	int106 "Tetratricopeptide repe	0.419	0.452	0.374	3e-14
UNIPROTKB|F1P4X4	304	TOMM34 "Uncharacterized protei	0.370	0.342	0.365	8.5e-14
UNIPROTKB|E2RJK8	309	TOMM34 "Uncharacterized protei	0.398	0.362	0.330	1.2e-13

TAIR|locus:2205225 AT1G56090 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 3.2e-68, Sum P(3) = 3.2e-68
 Identities = 104/131 (79%), Positives = 114/131 (87%)

Query:     1 MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
             MAS    + K+E+ HQLYRDG+Y+EAL FYTEAL+ AK K QKIALHSNRAACYLKLHDF
Sbjct:     1 MASAVTASGKVEKGHQLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDF 60

Query:    61 KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120
              KAAEECT VLELD  H+GALMLRAQTLVTLKEY SALFDV RL+ELNP SEVYQNL+AR
Sbjct:    61 IKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSALFDVTRLMELNPDSEVYQNLEAR 120

Query:   121 LKTQLSLAPIP 131
             L+TQLSLAPIP
Sbjct:   121 LRTQLSLAPIP 131

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2142246 Unc45a "unc-45 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 43/112 (38%), Positives = 66/112 (58%)

Query:     5 AAPANKIER-AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
             A+ A ++ +  ++L++ G YE AL  YT+ALS+    Q +  LH NRAAC+LKL D+ KA
Sbjct:    18 ASSAEQLRKEGNELFKCGDYEGALTAYTQALSLGATPQDQAILHRNRAACHLKLEDYSKA 77

Query:    64 AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
               E +  +E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct:    78 ESEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQ 129

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

RGD|1305357 Unc45a "unc-45 homolog A (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 43/112 (38%), Positives = 66/112 (58%)

Query:     5 AAPANKIER-AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
             A+ A ++ +  ++L++ G YE AL  YT+ALS+    Q +  LH NRAAC+LKL D+ KA
Sbjct:    18 ASSAEELRKEGNELFKCGDYEGALTAYTQALSLGATPQDQAILHRNRAACHLKLEDYSKA 77

Query:    64 AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
               E +  +E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct:    78 ESEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLKRCVSLEPKNKVFQ 129

GO:0005634 "nucleus" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=IEA;ISO

UNIPROTKB|A5PKJ5 UNC45A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 42/111 (37%), Positives = 63/111 (56%)

Query:    15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74
             ++L++ G YE AL  YT+AL +    Q +  LH NRAAC+LKL D++KA  E T  +E D
Sbjct:    14 NELFKCGDYEGALTAYTQALGLGATPQDQAILHRNRAACHLKLEDYEKAETEATKAIEKD 73

Query:    75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
                  AL  R+Q L  L   + A+ D+ R + L P ++V+Q     +  Q+
Sbjct:    74 GGDIKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIAGQI 124

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

UNIPROTKB|F1RMH7 UNC45A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query:     8 ANKIER----AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
             AN +E+     ++L++ G YE AL  YT+AL +    Q +  LH NRAAC+LKL D+ KA
Sbjct:    18 ANSVEQLRKDGNELFKCGDYEGALTAYTQALDLGATPQDQAVLHRNRAACHLKLEDYDKA 77

Query:    64 AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123
               E +  ++ D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q     +  
Sbjct:    78 ESEASKAIDKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIAG 137

Query:   124 QL 125
             Q+
Sbjct:   138 QI 139

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

UNIPROTKB|Q9H3U1 UNC45A "Protein unc-45 homolog A" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 45/127 (35%), Positives = 69/127 (54%)

Query:     4 PAAP-ANKIER----AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH 58
             PA P A+ +E+     ++L++ G Y  AL  YT+AL +    Q +  LH NRAAC+LKL 
Sbjct:    13 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE 72

Query:    59 DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118
             D+ KA  E +  +E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q   
Sbjct:    73 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 132

Query:   119 ARLKTQL 125
               +  Q+
Sbjct:   133 RNIGGQI 139

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1P0Z6 F1P0Z6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 196 (74.1 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 39/104 (37%), Positives = 61/104 (58%)

Query:    12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
             ER + L++ G +  AL  YT+ALS+ + + ++  LH NRAACYLKL D+ KA  + +  +
Sbjct:    16 ERGNALFQAGDHAAALAAYTQALSLCQAEPERAVLHRNRAACYLKLEDYAKAEADASKAI 75

Query:    72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
             E D     AL  R+Q L  L   + A+ D+ R + L P ++ +Q
Sbjct:    76 EADGRDMKALFRRSQALQKLGRLDQAVSDLQRCVSLEPKNKAFQ 119

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

UNIPROTKB|B6GVA2 int106 "Tetratricopeptide repeat protein" [Solanum lycopersicum (taxid:4081)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 49/131 (37%), Positives = 75/131 (57%)

Query:     6 APAN--KIERAHQLYRDGRYEEALGFYTEALSVA----KIKQQKIALHSNRAACYLKLHD 59
             A AN  K+E  + L++DG YEEAL  Y  AL VA       + +   H+NRAAC+ KL  
Sbjct:    87 AQANDAKVE-GNALFKDGLYEEALSKYELALQVAADIPSSTEIRSICHANRAACFTKLGK 145

Query:    60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
              ++  +ECT  LEL+  +  AL+ RA+    L+ +  A+ D+ +++EL PS +     QA
Sbjct:   146 HEETIKECTKALELNPTYIKALVRRAEAHEKLEHFEEAITDMTKILELEPSHD-----QA 200

Query:   120 RLKTQLSLAPI 130
             R +T + L P+
Sbjct:   201 R-RTVILLKPL 210

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P4X4 TOMM34 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 8.5e-14, P = 8.5e-14
 Identities = 42/115 (36%), Positives = 67/115 (58%)

Query:     4 PAAPANKIERA-------HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK 56
             PA  A  IERA       ++L + G +++A+  Y+E+L +     Q+ A ++NRA CYL 
Sbjct:   181 PAQTAAGIERAQTLKEEGNKLVKKGNHKKAIEKYSESLKL----NQECATYTNRALCYLT 236

Query:    57 LHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
             L   K+A ++CT  L LD  +  A   RAQ L  LK+Y S++ D+N L+++ P +
Sbjct:   237 LKQHKEAVQDCTEALRLDPKNVKAFYRRAQALKELKDYKSSIADINSLLKIEPKN 291

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|E2RJK8 TOMM34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 38/115 (33%), Positives = 67/115 (58%)

Query:    12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
             E  ++L + G +++A+  Y+E+LS + ++    A +SNRA C+L L  +K+A ++CT  L
Sbjct:   198 EEGNELVKKGNHKKAIEKYSESLSFSDMES---ATYSNRALCHLVLKQYKEAVKDCTEAL 254

Query:    72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126
              LD  +  A   RAQ    LK+Y S+  D++ L++L P +   Q L+  +   L+
Sbjct:   255 RLDGKNVKAFYRRAQAYKALKDYKSSFEDISSLLQLEPRNVPAQRLRQEVNQSLN 309

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000369 hypothetical protein (256 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-06
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	6e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 60.1 bits (146), Expect = 9e-12
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +   +  Y+ G Y+EAL +Y +AL   ++       + N AA Y KL  +++A E+    
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKAL---ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110
           LELD ++  A          L +Y  AL    + +EL+P+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSV 70
             + L++ G Y+EA+  Y +AL   ++       + N A  YLKL  D+++A E+    
Sbjct: 8  NLGNALFKLGDYDEAIEAYEKAL---ELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 71 LELD 74
          LELD
Sbjct: 65 LELD 68

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 31/181 (17%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E+ ++ YR+  + +A+  Y++A+      +     +SNRAAC+  L D++K  E+ T+ L
Sbjct: 132 EKGNKAYRNKDFNKAIKLYSKAI----ECKPDPVYYSNRAACHNALGDWEKVVEDTTAAL 187

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFD------------------VNRLIE---LNPS 110
           ELD +++ AL  RA     L +Y  AL D                  V RL++    + +
Sbjct: 188 ELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKA 247

Query: 111 SEVYQNLQARLKTQLSLAPIPES------EAEFEEEEEEEEEEINQAGPYGIEEEEGKSD 164
            E+ +     L +   +    +S       A  E+  E +EE  N     G++  E K+D
Sbjct: 248 KEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKAD 307

Query: 165 E 165
           E
Sbjct: 308 E 308

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 49  NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108
           N    Y KL D+ +A E     LELD ++  A    A     L +Y  AL D  + +EL+
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64

Query: 109 PSS-EVYQNL 117
           P + + Y NL
Sbjct: 65  PDNAKAYYNL 74

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 42  QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE-YNSALFD 100
                  N      KL D+ +A E     LELD ++  A    A   + L + Y  AL D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 101 VNRLIELNP 109
           + + +EL+P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 24/137 (17%)

Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------- 111
           DF  A +  T  ++LD N+      RAQ  + L  +  A+ D N+ IEL+PS        
Sbjct: 17  DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

Query: 112 -------EVYQNLQARLKTQLSLAPIPESEAEF-------EEEEEEEEEEINQAGPYGIE 157
                  E YQ  +A L+   SLAP    ++ F       +E+  EEE+++ Q  P  + 
Sbjct: 77  GTACMKLEEYQTAKAALEKGASLAP---GDSRFTKLIKECDEKIAEEEKDLVQPVPSDLP 133

Query: 158 EEEGKSDEKEDAVAPVI 174
                   +E    PV+
Sbjct: 134 SSVTAPPVEEADATPVV 150

Length = 356

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 3/152 (1%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-Y 75
           LY  G YEEAL  Y +AL +     +         A    L  +++A E     L+L+  
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199

Query: 76  NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPESEA 135
           +   AL+      + L +Y  AL    + +EL+P +       A L  +L      E+  
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR--YEEALE 257

Query: 136 EFEEEEEEEEEEINQAGPYGIEEEEGKSDEKE 167
             E+  E + +  N      +   E     ++
Sbjct: 258 ALEKALELDPDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           +   L   G  E AL  Y +A+    ++   IA+    A   ++  +F++A +   ++L+
Sbjct: 199 KGDLLLSLGNIELALAAYRKAI---ALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110
              N   A  L+A      K Y  A   +   ++  P 
Sbjct: 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 14 AHQLYRDGRYEEALGFYTEALSVAKI----KQQKIALHSNRAACYLKLHDFKKAAEECTS 69
          A  L R G Y+EAL    +AL +A+       +     +N A  YL L D+ +A E    
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 70 VLELD 74
           L L 
Sbjct: 72 ALALR 76

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG0553	304	consensus TPR repeat-containing protein [General f	99.83
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.63
KOG4234	271	consensus TPR repeat-containing protein [General f	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.46
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.42
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.33
PRK12370	553	invasion protein regulator; Provisional	99.33
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.32
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.3
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
PRK12370	553	invasion protein regulator; Provisional	99.3
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.27
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.26
PRK15331	165	chaperone protein SicA; Provisional	99.25
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.24
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.23
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.22
PF13512	142	TPR_18: Tetratricopeptide repeat	99.22
PRK10803	263	tol-pal system protein YbgF; Provisional	99.21
PRK15359	144	type III secretion system chaperone protein SscB;	99.21
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.21
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.18
PLN02789	320	farnesyltranstransferase	99.17
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.16
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.13
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.12
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.11
KOG1126	638	consensus DNA-binding cell division cycle control	99.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.1
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.1
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.08
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.07
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.06
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.03
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.03
PLN02789	320	farnesyltranstransferase	99.02
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.01
PF13371	73	TPR_9: Tetratricopeptide repeat	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.98
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.98
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.94
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.91
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.88
PF12688	120	TPR_5: Tetratrico peptide repeat	98.88
KOG2003	840	consensus TPR repeat-containing protein [General f	98.87
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.82
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.81
KOG2076	895	consensus RNA polymerase III transcription factor	98.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.8
PRK14574	822	hmsH outer membrane protein; Provisional	98.77
KOG4555	175	consensus TPR repeat-containing protein [Function	98.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.76
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.76
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.76
PF13371	73	TPR_9: Tetratricopeptide repeat	98.76
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.76
KOG1129	478	consensus TPR repeat-containing protein [General f	98.75
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.74
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
KOG1125	579	consensus TPR repeat-containing protein [General f	98.69
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.68
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.67
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.65
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.63
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.62
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.62
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.61
KOG2076	895	consensus RNA polymerase III transcription factor	98.58
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.56
PRK14574	822	hmsH outer membrane protein; Provisional	98.54
KOG0553	304	consensus TPR repeat-containing protein [General f	98.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.52
PRK11906	458	transcriptional regulator; Provisional	98.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.48
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.43
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.4
KOG1129	478	consensus TPR repeat-containing protein [General f	98.39
PRK11906	458	transcriptional regulator; Provisional	98.37
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.37
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.37
KOG1310	758	consensus WD40 repeat protein [General function pr	98.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.35
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.35
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.34
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.31
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.24
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.24
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.23
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.21
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.16
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.11
PRK10803	263	tol-pal system protein YbgF; Provisional	98.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.09
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.09
PF12688	120	TPR_5: Tetratrico peptide repeat	98.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.07
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.06
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.05
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.05
PF13428	44	TPR_14: Tetratricopeptide repeat	98.03
PF13428	44	TPR_14: Tetratricopeptide repeat	98.02
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.0
PF13431	34	TPR_17: Tetratricopeptide repeat	97.98
PRK15331	165	chaperone protein SicA; Provisional	97.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.94
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.86
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.84
KOG2003	840	consensus TPR repeat-containing protein [General f	97.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.83
PF13512	142	TPR_18: Tetratricopeptide repeat	97.83
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.8
KOG4234	271	consensus TPR repeat-containing protein [General f	97.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.79
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.76
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.74
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.73
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.71
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.69
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.66
KOG4555	175	consensus TPR repeat-containing protein [Function	97.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.66
PRK10941	269	hypothetical protein; Provisional	97.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.64
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.62
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.6
KOG3364	149	consensus Membrane protein involved in organellar	97.59
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.53
PF13431	34	TPR_17: Tetratricopeptide repeat	97.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.47
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.43
KOG2471	696	consensus TPR repeat-containing protein [General f	97.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.32
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.31
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.3
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.19
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.19
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.15
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.14
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.13
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.09
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.09
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.07
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.96
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.94
PRK04841	903	transcriptional regulator MalT; Provisional	96.93
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.92
PRK04841	903	transcriptional regulator MalT; Provisional	96.92
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.88
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.87
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.81
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.77
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.75
PLN03218	1060	maturation of RBCL 1; Provisional	96.74
KOG1586	288	consensus Protein required for fusion of vesicles	96.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.7
PLN03218	1060	maturation of RBCL 1; Provisional	96.69
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.69
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.65
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.57
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.55
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.51
PLN03077	857	Protein ECB2; Provisional	96.49
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.4
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.39
PRK10941	269	hypothetical protein; Provisional	96.36
COG2912	269	Uncharacterized conserved protein [Function unknow	96.36
KOG1586	288	consensus Protein required for fusion of vesicles	96.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.26
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.21
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.21
PLN03077	857	Protein ECB2; Provisional	96.15
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.11
KOG1585	308	consensus Protein required for fusion of vesicles	96.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.06
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.97
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.97
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.96
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.85
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.76
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.74
KOG2471	696	consensus TPR repeat-containing protein [General f	95.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.54
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.45
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.44
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.34
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.31
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.29
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.28
KOG3364	149	consensus Membrane protein involved in organellar	95.24
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.2
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.98
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.92
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.9
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.87
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.54
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.32
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.29
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.01
KOG1585	308	consensus Protein required for fusion of vesicles	93.98
COG3947	361	Response regulator containing CheY-like receiver a	93.91
COG2912	269	Uncharacterized conserved protein [Function unknow	93.85
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.74
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.4
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.35
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.22
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.0
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.95
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.87
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.84
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.64
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.51
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.49
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.43
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.42
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.38
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.3
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.71
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.34
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.3
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.17
COG5191	435	Uncharacterized conserved protein, contains HAT (H	90.96
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.85
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.57
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.12
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.1
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.06
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.05
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.85
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.69
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.27
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.2
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.2
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.06
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.04
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	88.73
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.72
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.62
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.59
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.45
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.25
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.19
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.73
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.7
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.6
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.19
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.58
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.48
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.18
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.68
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	84.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.19
COG5191	435	Uncharacterized conserved protein, contains HAT (H	84.11
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.06
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	83.52
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	83.49
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.81
KOG0529	421	consensus Protein geranylgeranyltransferase type I	82.43
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	81.9
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	81.85
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	81.19
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.16
KOG1310	758	consensus WD40 repeat protein [General function pr	81.02
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.28
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	80.22

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=6.7e-20  Score=165.49  Aligned_cols=120  Identities=25%  Similarity=0.410  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ++.++..|+.+.+.++|.+|+..|++||.+   +|.++.+|.|||.+|.++|.|+.|+++|+.+|.++|.+.++|.+||.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~  157 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL  157 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            678999999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      +|+.+|++.+|+..|+++|+++|+|+.++.+|..++..+.+..
T Consensus       158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999998887665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=1.4e-15  Score=125.82  Aligned_cols=118  Identities=14%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ++..+...|..++..|+|.+|+.+|.+++..   +|.+..+++++|.++.++|++.+|+..|.+++.++|.++.+++++|
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            4556778999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .++..+|++++|+..|++++.+.|+++..+.+++.++..+.
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.67  E-value=1.8e-15  Score=142.90  Aligned_cols=117  Identities=21%  Similarity=0.382  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++..|..+|..|+|..|+.+|.++|.+   +|.+..+|++||.||+++|+|.+|+.+|.++|.++|.++.+|+++|.+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~   79 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA   79 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            35788999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      |+.+|+|.+|+.+|+++++++|++..+..++..+...+..
T Consensus        80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888854

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=9.2e-16  Score=147.21  Aligned_cols=122  Identities=31%  Similarity=0.491  Sum_probs=117.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            1 MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         1 ~a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      |.+|..+...+..|+.+|+.|+|..|+.+|+++|..   +|.++.+|.|||.||.++|.|..|+.+|..+|+++|++.++
T Consensus       352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            456778889999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      |++.|.|+..+.+|..|+..|+++++++|.+.++...+.++...+
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988876

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.6e-15  Score=140.58  Aligned_cols=122  Identities=37%  Similarity=0.560  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      +...++.|+.+|+.|+|..|+..|.+++..++            .......+++|+|.||+++++|..|+..|.++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999998864            223456789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      |+|.+++|++|.||..+|+|+.|+.+|++++++.|.|..+...+.+|+......
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877644

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.63  E-value=1.8e-14  Score=116.16  Aligned_cols=122  Identities=24%  Similarity=0.321  Sum_probs=115.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+|.++...+.+|..++..|++.+|+..|++++..   +|.+..+++++|.+++++|++..|+..|.+++.++|.++..+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   88 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY   88 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            36888899999999999999999999999999998   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +++|.++...|+++.|+..|+++++++|++.....+...+...+.
T Consensus        89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        89 FHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998888877776653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.62  E-value=4.7e-15  Score=127.72  Aligned_cols=120  Identities=31%  Similarity=0.494  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIK--QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~--p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      +..++..|+.+|.+|+|.+|...|..||.+++.-  .....+|.|||.|+++++.++.||.+|+++|+++|.+-+++.++
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            5678889999999999999999999999998733  35688999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      |.+|.++..|++|+.+|.+.++++|....++....+|-.++.
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999988887777765543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.55  E-value=1.6e-13  Score=114.66  Aligned_cols=119  Identities=11%  Similarity=0.067  Sum_probs=107.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      +...+.++..|..++..|++++|...|+-+..+   +|.++..|+++|.|+..+|+|.+||..|..++.++|+++.++++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            456778899999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|.|++.+|+...|.+.|+.++...-.++.-.....+.+..+
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            999999999999999999999998755555555555444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=2.3e-13  Score=118.54  Aligned_cols=120  Identities=21%  Similarity=0.234  Sum_probs=109.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhcCCCH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACY-LKLHD--FKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~-~klg~--y~~Ai~~~~~al~i~p~~~   78 (281)
                      .+|.++..|+.+|..+...|+++.|+..|.+++.+   .|.+..+++++|.++ +..|+  +.+|+..+.++++++|++.
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV  144 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence            37999999999999999999999999999999999   999999999999985 68788  5999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .+++++|.+++..|+|++|+.+|+++++++|.+..-...+..|...
T Consensus       145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~a  190 (198)
T PRK10370        145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINMA  190 (198)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999876555555555544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.51  E-value=5.3e-14  Score=129.53  Aligned_cols=115  Identities=29%  Similarity=0.435  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++++|+.||++|.|++||.+|.++|..   .|.++.++.|||.+|++++.|..|..+|..|+.++..+.++|-++|.+
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A  174 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA  174 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            45789999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ...+|...+|.++++.+|+|.|.+.+++..++.|...+
T Consensus       175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR  212 (536)
T ss_pred             HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence            99999999999999999999999988888877776544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.49  E-value=1.1e-12  Score=120.64  Aligned_cols=106  Identities=21%  Similarity=0.134  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      ..+..++.+|..+...|++.+|+..|.+++.+   +|.++.+|+++|.++..+|+|+.|+..|.++++++|++..+|+++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  138 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR  138 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34778999999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      |.+++..|++++|+..|++++.++|+++.
T Consensus       139 g~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        139 GIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999974

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.9e-13  Score=130.22  Aligned_cols=113  Identities=23%  Similarity=0.373  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+..+|+.+|..|+|+.|+.+|+.+|.+   +|.+..+|.||+.||..+|+|.+|+++..+.++++|.++++|+++|.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga   78 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA   78 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc---CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence            356789999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +++.+|+|++|+..|.+.|+.+|+|..+...+..+.
T Consensus        79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999998888776

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.46  E-value=2.9e-12  Score=99.89  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALML   83 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~   83 (281)
                      ++.++..|..++..|+|.+|+..|..++...+.++....+++.+|.++++.|+|+.|+..|..++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            46789999999999999999999999999833334447889999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      +|.++..+|++.+|+..|.+++...|++..+...+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            999999999999999999999999999987766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.46  E-value=2.1e-13  Score=133.05  Aligned_cols=121  Identities=19%  Similarity=0.178  Sum_probs=104.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.-+.+++++|+++-..+.|+.|+.+|.+|+.+   .|..+.++-|+|.+|+.+|..+.||..|+++|.+.|+++.+|.
T Consensus       248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~  324 (966)
T KOG4626|consen  248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN  324 (966)
T ss_pred             CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence            5777888888999988888999999999888888   8888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|+++-..|+..+|+.+|.+||.+.|..+.+..+++.+++.+.
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~  368 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG  368 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            88888888888888888888888888888888888888877654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=8e-13  Score=126.13  Aligned_cols=117  Identities=30%  Similarity=0.520  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      -+..++.+|+.+|++|.|++||.+|+.||.+   .|..+.+|.||+.||-.+|++++.+++|+++|+++|++.++|++|+
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA  190 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA  190 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            3668899999999999999999999999999   7777999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNP--SSEVYQNLQARLKTQLS  126 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP--~~~~a~~~l~~l~~~l~  126 (281)
                      .++..+|++.+|+.++.- +.+..  .|..+...+.++.+++.
T Consensus       191 ~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  191 SAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             HHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHH
Confidence            999999999999999864 44433  35555566666655544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.42  E-value=6.4e-12  Score=126.31  Aligned_cols=117  Identities=17%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |..+..++.+|.+++..|+|++|+..|.+++..   +|.+..+++++|.+++.+|+|++|+.+|.+++.++|++..++++
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~  438 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ  438 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence            444444455555555555555555555555554   44455555555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +|.+++.+|++++|+..|++++.+.|.++.+...++.+..
T Consensus       439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            5555555555555555555555555555554444444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.42  E-value=1.4e-12  Score=127.38  Aligned_cols=117  Identities=21%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |..+++..++|+.+..+|.++.|+.+|..++..   .|..+.++.|+|.+|.++|++++|+.+|..+|+|.|.++.+|-+
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N  427 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN  427 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence            444455555555555555555555555555555   55555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +|++|-.+|+...|+++|.+|+.++|..+++..+++.+.+
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            5555555555555555555555555555555555544444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=6.1e-12  Score=126.44  Aligned_cols=121  Identities=20%  Similarity=0.146  Sum_probs=113.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|..+..+..+|.+++..|++++|+..|.+++.+   +|....+|+++|.+++.+|++++|+..|.+++.++|+++.+|+
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  403 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY  403 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3667888999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|.+++.+|++++|+.+|++++.++|++..++..++.+...++
T Consensus       404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999988888777765543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=4.1e-12  Score=91.14  Aligned_cols=67  Identities=24%  Similarity=0.374  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK-EYNSALFDVNRLIELNP  109 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g-~~~eAl~~~ekAL~ldP  109 (281)
                      ++.+|+++|.+++.+|+|++|+..|+++|+++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45677888888888888888888888888888888888888888888888 68888888888888877

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.33  E-value=4.7e-11  Score=101.14  Aligned_cols=110  Identities=24%  Similarity=0.205  Sum_probs=97.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      ++..+..++.+|..++..|+|.+|+.+|.+++...+..+....+++++|.+++++|+|++|+..|.+++.+.|.+..+++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            34677889999999999999999999999999873322234678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 023491           83 LRAQTLVTLKE--------------YNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        83 ~lg~a~~~~g~--------------~~eAl~~~ekAL~ldP~~~  112 (281)
                      .+|.++..+|+              +..|++.+++++.++|++-
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            99999999988              6889999999999999873

>PRK12370 invasion protein regulator; Provisional

Probab=99.33  E-value=4.2e-11  Score=119.28  Aligned_cols=121  Identities=9%  Similarity=-0.010  Sum_probs=109.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|..+...|++++|+.+|.+++.+   +|.++.+++++|.+++.+|++++|+..|.++++++|.++.+++
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            6889999999999999999999999999999999   9999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELN-PSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ld-P~~~~a~~~l~~l~~~l~  126 (281)
                      .++.+++..|++++|+..+++++... |+++.+..+++.+...++
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence            88888888999999999999999885 778888888887765544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.9e-12  Score=127.09  Aligned_cols=123  Identities=17%  Similarity=0.203  Sum_probs=100.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|..++.|...|+|+-.+++++.||.+|.+||.+   +|..+-+|.-+|+=+....+|+.|..+|+.||.++|++-.|||
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence            5889999999999999999999999999999999   7777777777777777777777888888777777777777788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      .+|.+|.+.++++.|...|++|++++|.+..+.-.++.+...++..
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK  539 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence            8888777777777777777777777777777766666666655433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.32  E-value=3.4e-11  Score=86.74  Aligned_cols=99  Identities=29%  Similarity=0.454  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .++..|..++..|++.+|+..|.+++..   .|....+++.+|.+++..+++++|+..|..++.+.|.+..+++.+|.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            5788999999999999999999999998   7777889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Q 023491           89 VTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ...|++..|...+.+++.+.|.
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999988873

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=7e-12  Score=117.75  Aligned_cols=122  Identities=25%  Similarity=0.415  Sum_probs=105.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      |.-...+...|+.+|+.|.|..|.++|+.+|.+.| .....+.+|.|||.+..++|+..+||.+|..++.|++...++|+
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall  325 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL  325 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence            33456788999999999999999999999999944 11245888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|+|+..+++|++|+++|++|+++.-+ ...+..+...+..|+
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            9999999999999999999999999866 555555555554444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.30  E-value=1.2e-10  Score=107.36  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.++.+++.+|..+...|+|+.|+..|.+++.+   +|....+++++|.+++..|++++|+.+|.+++.++|+++    
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~  170 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL  170 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6889999999999999999999999999999999   999999999999999999999999999998888765432    


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 023491           79 ------------------------------------------------------------------GALMLRAQTLVTLK   92 (281)
Q Consensus        79 ------------------------------------------------------------------~a~~~lg~a~~~~g   92 (281)
                                                                                        .+|+++|.++..+|
T Consensus       171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g  250 (296)
T PRK11189        171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG  250 (296)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence                                                                              25788899999999


Q ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 023491           93 EYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ  124 (281)
Q Consensus        93 ~~~eAl~~~ekAL~ldP-~~~~a~~~l~~l~~~  124 (281)
                      ++++|+.+|++++.++| +..+.+..+-.+...
T Consensus       251 ~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        251 DLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            99999999999999997 555665555555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3e-11  Score=107.10  Aligned_cols=119  Identities=24%  Similarity=0.356  Sum_probs=102.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK---------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      +...+.+.|+.+|+.|+|.+|+..|..||....               .+.....+++|.+.|++..|+|.++++.|+.+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            456788999999999999999999999987642               34456788999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Q 023491           71 LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV-YQNLQARLKTQ  124 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~-a~~~l~~l~~~  124 (281)
                      |..+|.+.++||.+|.++....+.++|.++|.++|+++|.-.. +...+..+...
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r  311 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENR  311 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997543 33334444333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=1.9e-10  Score=97.88  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGAL   81 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a~   81 (281)
                      |.++..+...|..++..|++.+|+..|.+++..   .|....+++++|.+++..|++++|+..|.+++...  +.....+
T Consensus        62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  138 (234)
T TIGR02521        62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL  138 (234)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHH
Confidence            444555555555555555555555555555555   44455555555555555555555555555555432  2334455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +.+|.++...|++.+|+..|.+++..+|.+..+...++.+...
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  181 (234)
T TIGR02521       139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL  181 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence            5555556666666666666666666666555555544444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=6.6e-11  Score=117.85  Aligned_cols=115  Identities=11%  Similarity=-0.013  Sum_probs=104.8

Q ss_pred             CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQLYRD---------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~---------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +|.++..+...|.+++..         +++.+|+..+.+++.+   +|.++.++..+|.+++..|++++|+..|++++++
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l---dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL---DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            688999999999877643         4589999999999999   9999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      +|+++.+|+.+|.++..+|++++|+..|+++++++|.+..+...+..
T Consensus       368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            99999999999999999999999999999999999998766544433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.29  E-value=1.7e-11  Score=113.18  Aligned_cols=114  Identities=26%  Similarity=0.352  Sum_probs=106.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+|.+++.++++|..++.+|+|..|+.+|..|+..   +|.+..++|.||.+|+.+|+-.-|+.+++++|++.|++..+.
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR  109 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR  109 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence            46778899999999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      ..+|.+++++|+++.|..+|..+|..+|.+.......
T Consensus       110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq  146 (504)
T KOG0624|consen  110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ  146 (504)
T ss_pred             HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence            9999999999999999999999999999765444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.28  E-value=8.7e-11  Score=123.63  Aligned_cols=116  Identities=10%  Similarity=0.043  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|. +..+...|.++.+.|++++|+..|.+++.+   +|.++.+++++|.++..+|++++|+..|.++++++|+++.+++
T Consensus       606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~  681 (987)
T PRK09782        606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR  681 (987)
T ss_pred             CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            353 667777777777777777777777777777   7777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ++|.++..+|++++|+..|++++.++|++..+....+.+.
T Consensus       682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        682 QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            7777777777777777777777777777665554444333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=3.3e-10  Score=96.36  Aligned_cols=122  Identities=22%  Similarity=0.239  Sum_probs=108.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.+...+...|..++..|++.+|+..|.+++.... .+....+++++|.+++..|++.+|+..|.+++..+|.+..+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  173 (234)
T TIGR02521        95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL  173 (234)
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence            467788899999999999999999999999998511 3556778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      .+|.+++.+|++.+|+..|++++.+.|.+......+..+....
T Consensus       174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (234)
T TIGR02521       174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL  216 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877777666665443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=2.2e-11  Score=111.75  Aligned_cols=113  Identities=24%  Similarity=0.387  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .|..+++.|+.+|+.++|..|+.+|+..|..--.++ .++.+|+|||.|.+.+|+|..||.+|.+++.++|.+.+++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            577889999999999999999999999998744343 5689999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      |.|++.+..+..|+.+++..+.++-....+..+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~  193 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR  193 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            9999999999999999999998876665554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.27  E-value=1.4e-10  Score=102.23  Aligned_cols=118  Identities=21%  Similarity=0.249  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---H
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---A   80 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a   80 (281)
                      +..+..++..|..++..|+|..|+..|.+++...+.++....+++.+|.+|+.+|+++.|+..|.++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            4578899999999999999999999999999984433344578899999999999999999999999999998776   7


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           81 LMLRAQTLVTL--------KEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        81 ~~~lg~a~~~~--------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ++.+|.+++..        |++..|+..|++++..+|++..+...+..+
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            99999999987        889999999999999999987665555433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.26  E-value=3.6e-11  Score=86.13  Aligned_cols=67  Identities=24%  Similarity=0.446  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDY   75 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p   75 (281)
                      ++..++.+|.+++..|+|.+|+.+|+++|.+   +|.++.+++++|.||+++| ++.+|+.+|.++|+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            7889999999999999999999999999999   9999999999999999999 79999999999999987

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.26  E-value=1.4e-10  Score=118.10  Aligned_cols=120  Identities=13%  Similarity=0.019  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++.+++.+|......|.|++|..++..++.+   .|.+..++.+++.++.+++++++|+..+++++..+|+++.+++.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            456888888999999999999999999999988   88889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.++.++|+|++|+..|++++..+|+++.++..++.+.+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            9999999999999999999999888888888888888877654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.25  E-value=1.3e-10  Score=97.82  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ..+..+..|-.+|..|+|.+|...|+-...+   ++.+...++.+|.|+..+++|++|+..|..+..++++++..+|..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            4567788999999999999999999999998   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      .|++.+|+...|+.+|+.++. .|.+..++..-..+...+....
T Consensus       113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~  155 (165)
T PRK15331        113 QCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE  155 (165)
T ss_pred             HHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence            999999999999999999998 5777777776666666655443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.24  E-value=3.7e-11  Score=89.89  Aligned_cols=83  Identities=27%  Similarity=0.452  Sum_probs=73.3

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALF   99 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~   99 (281)
                      +|+|..|+.+|.+++...+.++ +..+++++|.||+++|+|.+|+..+.+ +.+++.+..+++.+|.|++.+|+|++|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            6899999999999999943322 677888899999999999999999999 88889899999999999999999999999


Q ss_pred             HHHHH
Q 023491          100 DVNRL  104 (281)
Q Consensus       100 ~~ekA  104 (281)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4e-11  Score=105.85  Aligned_cols=99  Identities=27%  Similarity=0.453  Sum_probs=95.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..+.+.|+.+|..+.|..|+.+|.++|.+   +|..+..|.|++.||+++++++.+..+|.+++++.|+.++++|.+|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg   85 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG   85 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence            4677889999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 023491           86 QTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +++..+..|.+|+..+++|..+
T Consensus        86 ~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   86 QWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999999999776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.22  E-value=5.1e-10  Score=94.24  Aligned_cols=107  Identities=20%  Similarity=0.066  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++..|.+++..|+|++|+..|.+++.+.+.....+.+++++|.++.++|++++|+..|.+++.++|.+..+++++|
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            36677899999999999999999999999883322234678999999999999999999999999999999999999999


Q ss_pred             HHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 023491           86 QTLV-------TLKEYN-------SALFDVNRLIELNPSSE  112 (281)
Q Consensus        86 ~a~~-------~~g~~~-------eAl~~~ekAL~ldP~~~  112 (281)
                      .++.       .+|++.       +|+..|++++.++|.+.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999       777766       66666677888888654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.22  E-value=3.2e-10  Score=93.37  Aligned_cols=115  Identities=20%  Similarity=0.268  Sum_probs=105.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---AL   81 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~   81 (281)
                      ..+..++..|..++..|+|..|+..|+......|..+....+.+.+|.+|++.++|..|+..+++-|+++|.|+.   ++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            478899999999999999999999999999998888888999999999999999999999999999999999875   89


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           82 MLRAQTLVTLKE---------------YNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        82 ~~lg~a~~~~g~---------------~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      |.+|.+++....               ...|+..|++++..-|++.-+.....
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~  140 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK  140 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            999999999877               89999999999999999887765544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.21  E-value=6.8e-10  Score=100.89  Aligned_cols=117  Identities=13%  Similarity=0.031  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHH
Q 023491            6 APANKIERAHQL-YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~-~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~   81 (281)
                      +....+..|..+ +..|+|.+|+..|...+...|..+....+++.+|.+|+..|+|+.|+..|..++...|++   +.++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            357788888887 668999999999999999955444457899999999999999999999999999998874   6799


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +.+|.++..+|++..|+..|+++++..|+...+.....+|.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~  261 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN  261 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999998877766653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.21  E-value=1.6e-10  Score=95.50  Aligned_cols=96  Identities=16%  Similarity=0.061  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           27 LGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        27 l~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      ..+|.+++.+   +|..   ++++|.+++++|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus        13 ~~~~~~al~~---~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLSV---DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHc---CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3578899998   7664   678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcC
Q 023491          107 LNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus       107 ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++|++..++..++.+...++..
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCH
Confidence            9999999999999988776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.21  E-value=4.6e-10  Score=118.25  Aligned_cols=119  Identities=19%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.+...+...+...+..|++++|+.+|.+++.+   +|. ..+++++|.++.++|++++|+..|.+++.++|+++.++++
T Consensus       573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            444445555555666669999999999999998   885 8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.++..+|++++|+..|+++++++|++..++.+++.+...++
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG  691 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD  691 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999988887776554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.19  E-value=7.1e-10  Score=112.68  Aligned_cols=107  Identities=16%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEE----ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~e----Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      |.++..++.+|..++..|++.+    |+..|.+++.+   +|.+..++.++|.+++.+|++++|+..|++++.++|+++.
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            4555555556666666666553    55566666665   5555566666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      +++++|.++..+|++++|+..|++++..+|.+..
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence            6666666666666666666666666666555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.18  E-value=1e-10  Score=82.98  Aligned_cols=65  Identities=23%  Similarity=0.299  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           48 SNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        48 ~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      +.+|..+++.|+|++|+..|+.+++.+|.++.+++.+|.++..+|++.+|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            45888999999999999999999999999999999999999999999999999999999999875

>PLN02789 farnesyltranstransferase

Probab=99.17  E-value=8.3e-10  Score=103.04  Aligned_cols=120  Identities=21%  Similarity=0.101  Sum_probs=112.9

Q ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDG-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF--KKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y--~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.+..++..+|.++...| .+.+|+..+.+++..   +|.+..+|++|+.++.++|..  ..++.++.++|+++|++..
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~  143 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH  143 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence            6889999999999999998 689999999999999   999999999999999999974  7889999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|..+|.++..+|+|++|++++.++|+++|.|..++..+..+...+
T Consensus       144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998886654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.17  E-value=3.5e-11  Score=115.05  Aligned_cols=119  Identities=21%  Similarity=0.326  Sum_probs=114.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..+..+|+.+|..++|+.|+.+|++||.+   +|+++.++.+|+.++++.++|..|+.++.+||+++|...++|+++|
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg   79 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG   79 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence            4567889999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .+...++++.+|+..|+....+.|+.+.+...+..+......
T Consensus        80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.16  E-value=8.6e-10  Score=96.09  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHH
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL-VTLKE--YNS   96 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~-~~~g~--~~e   96 (281)
                      .++..+++..|.+++..   +|.+..+|+.+|.+|+.+|+++.|+..|.++++++|+++.+++.+|.++ ...|+  +.+
T Consensus        52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            45668889999999998   9999999999999999999999999999999999999999999999986 67788  599


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           97 ALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      |+..|+++++++|++..++.+++.+...++.
T Consensus       129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~  159 (198)
T PRK10370        129 TREMIDKALALDANEVTALMLLASDAFMQAD  159 (198)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence            9999999999999999999999888766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.13  E-value=3.9e-10  Score=102.33  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      +.++..+...|.++.+.|++++|+.+|.+++..   +|.+..+...++.++...|+++++...+.......|.++..+..
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~  219 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA  219 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence            568889999999999999999999999999999   99999999999999999999999999998888888888889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI  130 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~  130 (281)
                      +|.++..+|++++|+..|++++..+|+++.+...++.+....+....
T Consensus       220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999988877765543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.13  E-value=1.7e-09  Score=96.60  Aligned_cols=126  Identities=14%  Similarity=0.039  Sum_probs=117.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+|.+...+..+|..++..|+|..|+..+.++..+   .|.+..+|.-+|.+|.++|+++.|...|.+++++.+..+.++
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~  171 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA  171 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence            35677778888999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI  130 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~  130 (281)
                      -|+|..|+-.|+++.|...+..+...-+.+..+..++..+.........
T Consensus       172 nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence            9999999999999999999999999988899999999998877765543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=2.8e-10  Score=110.55  Aligned_cols=103  Identities=15%  Similarity=0.154  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      -++++...+|..|+-.|+|+.|+.+|+.||..   .|.+..+|+.+|.++-.-.+..+||..|.+|+++.|.+.++.|+|
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl  504 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL  504 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence            57888999999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      |.+++.+|.|.+|+.+|-.||.+.+.
T Consensus       505 gIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.8e-09  Score=102.99  Aligned_cols=125  Identities=15%  Similarity=0.060  Sum_probs=105.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      ||....+|.-.|+.+..++.-..|+..|.+|+.+   +|.+..+||.+|.+|--++...=|+-+|++|+...|.+.+.|-
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~  436 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV  436 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence            5777788888888888888888888888888888   8888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI  130 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~  130 (281)
                      .||.||.++++.++|+++|.+|+.+.-.+..+...++.+...+.....
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence            888888888888888888888888887777888888888777765543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=6.7e-10  Score=109.37  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.+=.+|+-.|.+|++.++|+.|.-+|.+|+.+   +|.+......+|..+.++|+.++|+..|++|+.++|.++-+-|.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            445567778888888888888888888888887   88888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +|.+++.+++|.+|+..++++-++-|++..+..+++++.+.++..
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence            888888888888888888888888888888888888887776644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.10  E-value=3.2e-09  Score=93.46  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL--------HDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl--------g~y~~Ai~~~~~al~i~p~~~   78 (281)
                      ..+++..|.+++..|++.+|+..|.+++...|.++....+++.+|.+++++        |++.+|+..|.+++..+|.+.
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            367899999999999999999999999999554444455899999999987        899999999999999999986


Q ss_pred             HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhcC
Q 023491           79 GAL-----------------MLRAQTLVTLKEYNSALFDVNRLIELNPSS---EVYQNLQARLKTQLSLA  128 (281)
Q Consensus        79 ~a~-----------------~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~---~~a~~~l~~l~~~l~~~  128 (281)
                      .++                 +.+|.+++.+|++..|+..|++++...|+.   ..++..++.+...++..
T Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            432                 467889999999999999999999998764   46777777777766544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.10  E-value=1.4e-09  Score=87.49  Aligned_cols=97  Identities=14%  Similarity=0.053  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           28 GFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        28 ~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+|.+++..   +|.+..+.+.+|.+++..|++.+|+..++.++.++|.++.+++++|.+++.+|++..|+..|++++.+
T Consensus         4 ~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         4 ATLKDLLGL---DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hhHHHHHcC---ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468889998   89899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhc
Q 023491          108 NPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus       108 dP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.+...+.+++.+....+.
T Consensus        81 ~p~~~~~~~~la~~~~~~g~  100 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGE  100 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCC
Confidence            99999999999988877643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=3e-09  Score=96.86  Aligned_cols=120  Identities=21%  Similarity=0.149  Sum_probs=108.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH---DFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~p~~~   78 (281)
                      +||.+++-|..+|..|+..|++..|+..|.+|+++   .+.++..+..+|.+++...   ...++...+.+++..+|.+.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i  227 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI  227 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence            68999999999999999999999999999999999   9999999999998887644   57789999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +++++||..++..|+|.+|+..++..|.+.|.+..-+..+++....
T Consensus       228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999876655555544433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.10  E-value=3.4e-09  Score=109.45  Aligned_cols=118  Identities=10%  Similarity=0.082  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|..+..+...|..+...|++.+|+.+|.+++..   .|.+..+++.+|.++...|++.+|+..+.+++...|+++. ++
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~  120 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LL  120 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HH
Confidence            4678888999999999999999999999999999   9999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .+|.++...|++.+|+..|++++.+.|++..+...++.+...
T Consensus       121 ~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        121 ALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887776543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=2.6e-09  Score=94.04  Aligned_cols=115  Identities=18%  Similarity=0.111  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +.+.+++|..|+..|++..|...+++||..   +|....+|..||.+|.++|+.+.|-+.|++|+.++|++..++-|.|.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            567788899999999999999999999998   99999999999999999999999999999999999988888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIEL--NPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~l--dP~~~~a~~~l~~l~~~  124 (281)
                      .+|..|++++|.+.|++|+..  -|.-.....+++.|.-+
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~  151 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK  151 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence            888888888888888888763  22344555566555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.09  E-value=2.9e-09  Score=108.19  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=105.1

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +.|.++..+...|.+.+..|+++.|+..|++++..   +|.++.++..+|.+++..|++++|+..|.+++.++|++..++
T Consensus        71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~  147 (656)
T PRK15174         71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF  147 (656)
T ss_pred             hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            36888999999999999999999999999999998   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      +.+|.++..+|++++|+..|++++.+.|++..+..++
T Consensus       148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~  184 (656)
T PRK15174        148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC  184 (656)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999999999988776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=2e-09  Score=94.73  Aligned_cols=119  Identities=19%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL--DYNHTGA   80 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i--~p~~~~a   80 (281)
                      +|.+..++..+|..|...|+.+.|-+.|++||.+   +|.+..+++|.|..++.+|+|++|...|++|+..  .+..+..
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t  141 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT  141 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence            6788888888898899999999999999999998   8888889999998888899999999999888763  2355678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |-|+|.|.+++|++..|...|+++|+++|+++.....+..+...
T Consensus       142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence            88999999999999999999999999999888777666665544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.08  E-value=2.8e-09  Score=114.56  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH--------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI--------------ALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~--------------~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      +|.++..+..+|.++++.|++++|+.+|.+++..   .|...              .+...+|.++++.|++++|+..|.
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~---~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~  375 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL---DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ  375 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6889999999999999999999999999999998   44332              123466888999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +++.++|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+.
T Consensus       376 ~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998887776664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.08  E-value=3.7e-09  Score=107.05  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=101.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.+...+...|..+...|++.+|+..|.+++..   .|.+..++.++|.++...|+ .+|+..+.+++.+.|+++..+.
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~  841 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD  841 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence            4677888888888888888888888888888887   78888888888888888888 7788888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|.+++.+|++++|+..|+++++++|.++.+...++.+....+
T Consensus       842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  885 (899)
T TIGR02917       842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG  885 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence            88888888899999999999999988888888888777765543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.08  E-value=2.9e-09  Score=95.90  Aligned_cols=117  Identities=17%  Similarity=0.143  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GALM   82 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~~   82 (281)
                      ++..+++.|..+++.|+|..|...|...|...|..+..+.++|.||.++|.+|+|..|...|..+++-.|+++   +++|
T Consensus       140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            3455899999999999999999999999999888888999999999999999999999999999999988764   6899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      .+|.++..+|+.+.|...|+++++.-|+.+.+......++
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~  259 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK  259 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999998887776664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.5e-09  Score=103.49  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=106.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK   92 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g   92 (281)
                      -|+-|-..++.+.|+.+|++||++   +|....+|.-+|+=|+.+++...|+..|++|+.++|.+.++||.+|++|.-++
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~  412 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK  412 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence            466677788999999999999999   99999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           93 EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        93 ~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      -..=|+.+|++|+.+.|.++.++..++.+..++...
T Consensus       413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            999999999999999999999999999999877543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.06  E-value=4.1e-09  Score=106.72  Aligned_cols=118  Identities=22%  Similarity=0.213  Sum_probs=106.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      +..+..+...|.+++..|+|++|+..|.+++..   +|....+++.+|.+++..|++.+|+..+.+++..+|.+..+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  198 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAI---DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL  198 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            456778889999999999999999999999998   88888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +|.++...|+++.|+..|++++.++|.+..++..+..+...
T Consensus       199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  239 (899)
T TIGR02917       199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE  239 (899)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887777666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.8e-09  Score=104.89  Aligned_cols=122  Identities=20%  Similarity=0.217  Sum_probs=108.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      .|.++-.+.+.|..+|..+.|.+|+.+|..++..++    ..+.-...+.|+|+++.+++.|.+||..|+++|.+.|.++
T Consensus       410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~  489 (611)
T KOG1173|consen  410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA  489 (611)
T ss_pred             CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence            488999999999999999999999999999995443    1112345689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .+|-.+|.+|..+|+++.|+..|.++|.++|++..+..++..+-..
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888888765443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.03  E-value=6.1e-09  Score=90.85  Aligned_cols=122  Identities=20%  Similarity=0.231  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GAL   81 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~   81 (281)
                      .++..++..|..++..|+|.+|+..|+.++...|..+....+.+.+|.++++.|+|..|+..|...++..|.+.   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            46889999999999999999999999999999888888899999999999999999999999999999999876   589


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLK-----------EYNSALFDVNRLIELNPSSEVY---QNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g-----------~~~eAl~~~ekAL~ldP~~~~a---~~~l~~l~~~l~  126 (281)
                      |.+|.+++.+.           ....|+..|+.++...|+.+-+   ...+..|+..+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence            99999987753           3468999999999999997544   444555555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.03  E-value=7.7e-09  Score=105.42  Aligned_cols=119  Identities=10%  Similarity=-0.059  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|+++.++...|.++++.+++++|+..+++++..   +|.++.+++.+|.++.++|+|++|+..|++++.-+|++..++.
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            4899999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQ  124 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~-~~~a~~~l~~l~~~  124 (281)
                      .+|.++..+|+.++|...|++|+.+... ...+-..+..+...
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  235 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD  235 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999998644 43334444444433

>PLN02789 farnesyltranstransferase

Probab=99.02  E-value=6.5e-09  Score=97.03  Aligned_cols=120  Identities=20%  Similarity=0.139  Sum_probs=109.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRY--EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy--~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      .+|.+.+++..+|.++.+.|.+  ..++.++.++|..   +|.+..+|.+|+.++..+|.|++|+.+|.++|++++.+..
T Consensus       101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            3788999999999999888874  7889999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           80 ALMLRAQTLVTL---KEY----NSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        80 a~~~lg~a~~~~---g~~----~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +|+.+|.++..+   |.+    ++++.+..++|.++|+|..++..+..+...
T Consensus       178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            999999999887   333    578899999999999999999998888754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.01  E-value=1e-08  Score=110.27  Aligned_cols=116  Identities=16%  Similarity=0.070  Sum_probs=98.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHH--------------------------------
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNR--------------------------------   50 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nr--------------------------------   50 (281)
                      +|.++.+++.+|.+++..|++++|+.+|.+++.+   +|.+..++.++                                
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~  457 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER  457 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5788889999999999999999999999999988   66655554443                                


Q ss_pred             ----------HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           51 ----------AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        51 ----------a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                                |.+++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|.++.+...++.
T Consensus       458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al  537 (1157)
T PRK11447        458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL  537 (1157)
T ss_pred             HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                      4445568999999999999999999999999999999999999999999999999999999887766554


Q ss_pred             H
Q 023491          121 L  121 (281)
Q Consensus       121 l  121 (281)
                      +
T Consensus       538 ~  538 (1157)
T PRK11447        538 Y  538 (1157)
T ss_pred             H
Confidence            4

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.00  E-value=2.9e-09  Score=76.92  Aligned_cols=71  Identities=34%  Similarity=0.478  Sum_probs=63.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           51 AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        51 a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ..+|++.++|..|+..+++++.++|.++..++.+|.+++.+|++.+|+.+|++++++.|++..+...++.|
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56788999999999999999999999999999999999999999999999999999999988887766544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=2.8e-09  Score=75.47  Aligned_cols=65  Identities=22%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      +.+|..++..|+|++|+.+|.+++..   .|.+..+++.+|.|++.+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999   999999999999999999999999999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=3.1e-09  Score=101.94  Aligned_cols=105  Identities=18%  Similarity=0.257  Sum_probs=99.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++++|...|..++|++|+.-|++++.+   +|.++-+|..+|.+.|+++.+..+...|+.+++..|+.+++|-
T Consensus       390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~  466 (606)
T KOG0547|consen  390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN  466 (606)
T ss_pred             CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence            6889999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ..|.++...++|..|++.|..|++|.|.
T Consensus       467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  467 LFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999988

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.98  E-value=2.1e-08  Score=94.21  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK-----IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~-----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      |.+...+..++..+...|+|++|+..|..++..   .+..     ..++.++|.++++.|++++|+..|.++++++|.+.
T Consensus       138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        138 DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            445555666666666666666666666666665   3221     33456677777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      .+++.+|.++...|++.+|+..|++++..+|.+
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            777777777777777777777777777777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.96  E-value=2.5e-08  Score=89.60  Aligned_cols=122  Identities=20%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GAL   81 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~   81 (281)
                      .++..++..|..++..|+|.+|+..|..++...|..+....+.+.+|.+|+++++|..|+..|++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            47888999999999999999999999999999554445556679999999999999999999999999999875   489


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKE------------------YNSALFDVNRLIELNPSSEV---YQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~------------------~~eAl~~~ekAL~ldP~~~~---a~~~l~~l~~~l~  126 (281)
                      |.+|.++..++.                  ...|+..|++.++..|+..-   ++..+..|+..+.
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence            999998766541                  36789999999999999754   4444455555554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.95  E-value=8.2e-09  Score=105.32  Aligned_cols=124  Identities=16%  Similarity=0.166  Sum_probs=115.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-TGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-~~a~   81 (281)
                      ++.|+.++..+++-+|-.|+|..+..++..++......+..+..+|.+|.+|+.+|+|++|..+|..++..++++ .-++
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence            678999999999999999999999999999999865566778889999999999999999999999999999988 7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.+|++++..|+++.|+.+|+++++..|++......++.+.....
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            999999999999999999999999999999999999998887764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.94  E-value=2.9e-08  Score=93.20  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-----GALM   82 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-----~a~~   82 (281)
                      ..+...|..++..|+++.|+..|.+++..   .+....++..++.++.+.|++++|+..+..++...|.+.     ..++
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  184 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC  184 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            34555666666666666666666666665   566666777777777777777777777777776665542     2455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      .+|.++...|++.+|+..|+++++++|++..+...++.+....
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  227 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ  227 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence            6777777778888888888888877777776666666655543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.92  E-value=9.9e-09  Score=84.54  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ..+.+..|..++..|+|++|+..|..++...+.......+.+++|.+++.+|+|++|+..+..+ .-.+-.+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHH
Confidence            5666777888888888888888888888763222334567777888888888888888887552 223334556777788


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL  105 (281)
                      +|...|++++|+..|++||
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            8888888888888887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.91  E-value=3.3e-08  Score=102.19  Aligned_cols=112  Identities=13%  Similarity=-0.020  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ...+..+|..+...|++++|+.+|.+++..   .|.+..+++++|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            456778999999999999999999999999   89999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ++..+|+|+.|+..+++++...|+++.+..+....
T Consensus       436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        436 TALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999887755443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.91  E-value=4.7e-09  Score=74.75  Aligned_cols=67  Identities=28%  Similarity=0.385  Sum_probs=51.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           55 LKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        55 ~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ++.|+|++|+..|.+++..+|++..+++.+|.+|+..|++++|...+++++..+|+++.++.+++.|
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5677788888888888888888888888888888888888888888888888888777777666543

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.88  E-value=2e-08  Score=95.04  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|.+|+..|.++|.+   +|..+.+|+++|.+|+.+|+|+.|+..|++++.++|++..+..
T Consensus        32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  108 (356)
T PLN03088         32 DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTK  108 (356)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6889999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 023491           83 LRAQTLVTLK   92 (281)
Q Consensus        83 ~lg~a~~~~g   92 (281)
                      .++.|..++.
T Consensus       109 ~l~~~~~kl~  118 (356)
T PLN03088        109 LIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHH
Confidence            9988876663

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.88  E-value=4.9e-08  Score=78.60  Aligned_cols=99  Identities=20%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN---HTGALMLR   84 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~---~~~a~~~l   84 (281)
                      .++++.|.++-..|+..+|+.+|.+++......+....++.++|.++..+|++++|+..++.++.-.|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999974445556789999999999999999999999999999888   77888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      +.+++.+|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=8.1e-09  Score=98.47  Aligned_cols=117  Identities=18%  Similarity=0.141  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      -++.++.++|+..|.+|+|+.|+..|..+|..   +..+..++||+|..+-.+|++++|+.+|-++-.+--+++++++.+
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            47788999999999999999999999999997   889999999999999999999999999999877777899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +++|..+.+-..|+++|.++..+-|+++.+..-++.+...
T Consensus       565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            9999999999999999999999999999988888777654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.87  E-value=2.9e-08  Score=83.16  Aligned_cols=88  Identities=11%  Similarity=0.028  Sum_probs=82.5

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      +......|.+|..++..|++++|+..|+.++.++|.+...||+||.|+..+|+|.+|+..|.+|+.++|+++....+.+.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhcC
Q 023491          121 LKTQLSLA  128 (281)
Q Consensus       121 l~~~l~~~  128 (281)
                      +.-.++..
T Consensus       112 c~L~lG~~  119 (157)
T PRK15363        112 CYLACDNV  119 (157)
T ss_pred             HHHHcCCH
Confidence            88776544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.87  E-value=1.2e-09  Score=100.88  Aligned_cols=110  Identities=19%  Similarity=0.321  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ...+-.+..++..|.++.|+++|+.+|.+   +|..+.+|.+|+.+++++++...|+.+|..+|.++|+....|-.+|.+
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A  191 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA  191 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence            34566788999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +..+|.|.+|..+|..+++++-+.. +-.++..+
T Consensus       192 ~rllg~~e~aa~dl~~a~kld~dE~-~~a~lKeV  224 (377)
T KOG1308|consen  192 ERLLGNWEEAAHDLALACKLDYDEA-NSATLKEV  224 (377)
T ss_pred             HHHhhchHHHHHHHHHHHhccccHH-HHHHHHHh
Confidence            9999999999999999999985544 33333333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.82  E-value=6.8e-08  Score=86.38  Aligned_cols=120  Identities=16%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+|.+..+ ...+..++..|+-+.++....+++..   ++.+..+..-+|...++.|+|..|+..+.++.++.|+++++|
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~  137 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW  137 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence            36778888 88899999999999999888887776   888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ..+|.+|.+.|++..|...|.+++++.|+++.+..+++-.....
T Consensus       138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            99999999999999999999999999999999999988766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.81  E-value=3.6e-08  Score=98.73  Aligned_cols=107  Identities=21%  Similarity=0.177  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAE--ECTSVLELDYNHTGAL   81 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~--~~~~al~i~p~~~~a~   81 (281)
                      |..+..++..|..+...|.+.+|...|..|+.+   +|.+......+|.++++.|+-.-|..  .+..+++++|.++++|
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence            567788999999999999999999999999999   99999999999999999998877777  9999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      |++|.++..+|+...|..+|..|+++.+.++.
T Consensus       758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999988764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.81  E-value=2.2e-08  Score=96.19  Aligned_cols=69  Identities=23%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIA---LHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~---a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      ++|.++..++++|..++..|+|++|+.+|+++|.+   +|.+..   +|+|+|.||.++|++++|+.+|.++|++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46777777777777777777777777777777777   666653   4777777777777777777777777776

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.80  E-value=1.4e-07  Score=95.82  Aligned_cols=116  Identities=19%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ++.++..|+.+|..|++.+|...+..+|+.   +|..+.+|+.+|.+|-++|+..+|+.....|-.++|.+...|..+|.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            567788899999999999999999999998   99999999999999999999999988888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ...++|.+..|.-+|.+||+++|.+-........|.+..
T Consensus       216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            888888899998899999988888776666655555543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.4e-08  Score=95.83  Aligned_cols=124  Identities=19%  Similarity=0.227  Sum_probs=106.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      ++.++.+++.+|.+++-..+.+.|+.+|.++|.+.|         ..+.....+..+|.-.++.|.|..|.+.|+.+|.+
T Consensus       199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            466899999999999999999999999999999943         22234556778899999999999999999999999


Q ss_pred             cCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           74 DYNHT----GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        74 ~p~~~----~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|++.    .+|+++|.++.++|+..+|+.+...|+.|+|.--.+....+.+...++
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            99764    689999999999999999999999999999876666666666555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.80  E-value=2e-08  Score=71.43  Aligned_cols=68  Identities=28%  Similarity=0.383  Sum_probs=62.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491           17 LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus        17 ~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ++..|+|.+|+.+|.+++..   +|.+..+++.+|.||++.|++++|...+.+++..+|+++..+..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            47889999999999999999   999999999999999999999999999999999999998888887764

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.77  E-value=1.7e-07  Score=97.27  Aligned_cols=113  Identities=11%  Similarity=0.004  Sum_probs=80.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|..+...+..+...++.|+|..|+..|.+++..   +|....+.+.++.++...|++.+|+..|++++.-.+.....+.
T Consensus        30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            5778889999999999999999999999999998   7776433336666666667777777777777622333344444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      .+|.++..+|+|..|+..|+++++++|+++.+...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL  142 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM  142 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            446677777777777777777777777776665544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.77  E-value=2.3e-07  Score=75.61  Aligned_cols=99  Identities=22%  Similarity=0.234  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----GALMLR   84 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----~a~~~l   84 (281)
                      .+--+|..+-..|+.+.|++.|.++|.+   -|..+.+|+||+.++.-.|+-++|+.++.+++++.....    .+|..+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            3445788888999999999999999999   899999999999999999999999999999999976544    479999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      |.+|..+|+-+.|..+|+.|-++...
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            99999999999999999999888654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.76  E-value=2e-08  Score=73.53  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=48.2

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----Y---NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p---~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      |..+.+++++|.+|+.+|+|++|+..|.+++.+.    +   ..+.+++++|.++..+|++++|+..|++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4456677778888888888888888888777552    1   12457788888888888888888888887765

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=2.5e-07  Score=89.00  Aligned_cols=121  Identities=23%  Similarity=0.198  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .....++-.+...|..|.++.|...+...+..   .|.++.++..++.+++..++..+|++.+.+++.++|...-..+++
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            34556677777777777777777777777776   777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      |++|++.|++++|+..+.+.+.-+|+++..|.+++.....++..
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            77777777777777777777777777777777777776665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.76  E-value=8.5e-08  Score=80.68  Aligned_cols=112  Identities=12%  Similarity=0.014  Sum_probs=93.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVT   90 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~   90 (281)
                      .+.+|..+.|..+...+...+... .....+.+++++|.+++.+|+|++|+..|.+++.+.+++   +.+|+++|.++..
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~   84 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTT-SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS   84 (168)
T ss_pred             ccccccccccccchhhhhHhccCC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence            456677778888888886665541 123347788999999999999999999999999997763   4589999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           91 LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        91 ~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|++++|+..|++++.++|........++.+...++
T Consensus        85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999999999999998888888887554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.76  E-value=6e-08  Score=69.90  Aligned_cols=70  Identities=30%  Similarity=0.425  Sum_probs=65.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ...++..++|..|+.++++++.+   +|.++.+++.+|.|++++|+|.+|+.+|++++++.|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46789999999999999999999   99999999999999999999999999999999999999988777664

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.76  E-value=1.2e-07  Score=67.95  Aligned_cols=81  Identities=27%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +++++|.+++..|++.+|+..|..++...|.+..+++.+|.++...|+++.|+..|++++.+.|.+..+...++.+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999887777777665554


Q ss_pred             h
Q 023491          126 S  126 (281)
Q Consensus       126 ~  126 (281)
                      +
T Consensus        82 ~   82 (100)
T cd00189          82 G   82 (100)
T ss_pred             H
Confidence            3

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.2e-08  Score=94.16  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN---HTGA   80 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~---~~~a   80 (281)
                      |.+.++.-..|..||-.++.+-|+.+|.+.|.+   .-..+.+|+|+|.|.+-.++|+-++..|.+++.....   -+.+
T Consensus       321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm---G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv  397 (478)
T KOG1129|consen  321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQM---GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV  397 (478)
T ss_pred             CccceeeeeeeeccccCCChHHHHHHHHHHHHh---cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence            334444444455566666677777777777776   7788999999999999999999999999999987652   4568


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ||++|.+....|++..|..+|+-||.-++++.++.++++.++..-
T Consensus       398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS  442 (478)
T ss_pred             hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence            999999999999999999999999999999999999999887553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=3.2e-07  Score=81.99  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.+..+.+..|..+-..|.|++|+++|+..|.-   +|.+...|-..-.+..-+|+--.||+.+..-+...+.+.++|..
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~e  159 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHE  159 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHH
Confidence            567777888899999999999999999998886   77777777766666666777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++.+|+.+|+|+.|..+|+.++-+.|.++.....++.++.-++
T Consensus       160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            7777777777777777777777777777776666666655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.74  E-value=4.1e-07  Score=87.52  Aligned_cols=123  Identities=22%  Similarity=0.119  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +.|.|+..+-..+..++..++..+|++.|.+++.+   +|....+..++|.+|++.|++.+|+..+...+.-+|+++..|
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w  411 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW  411 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence            35889988899999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ..||.+|..+|+..+|...+-..+.+.-....+...+.+.++..+.
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~  457 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKL  457 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999998888888877777776643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.72  E-value=1.5e-07  Score=80.31  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 023491           23 YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD----------FKKAAEECTSVLELDYNHTGALMLRAQTLVTLK   92 (281)
Q Consensus        23 y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~----------y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g   92 (281)
                      |+.|.+.|...+..   +|.++..+++-|.+++.+.+          +++|+.=|+.||.++|+...+++++|++|..++
T Consensus         7 FE~ark~aea~y~~---nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAK---NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            56788888888888   99999999999999988754          567888899999999999999999999999876


Q ss_pred             C-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           93 E-----------YNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        93 ~-----------~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .           |+.|..+|++|+.++|+|..++..+....+.
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            5           8999999999999999999999988877654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.71  E-value=2.1e-07  Score=89.56  Aligned_cols=69  Identities=16%  Similarity=0.017  Sum_probs=66.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           39 IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA---LMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        39 ~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a---~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+|.++.+++|+|.+|+++|+|++|+..|+++|+++|++..+   ||++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999999999865   999999999999999999999999997

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=2.4e-07  Score=86.06  Aligned_cols=104  Identities=16%  Similarity=-0.009  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.....+...|..+...|++.+|+..|.+++.+   .|.+..++..+|.+++..|++++|+..+.+++...|...    
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~  186 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG  186 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence            4566677778899999999999999999999999   888899999999999999999999999999999876432    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      ..|+.+|.++...|++++|+..|++++...|
T Consensus       187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            3577899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=1.1e-07  Score=92.76  Aligned_cols=120  Identities=15%  Similarity=0.081  Sum_probs=98.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------------------------cCc--c
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------------------------IKQ--Q   42 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------------------------~~p--~   42 (281)
                      +|.|..++..+|..|...|.-.+|+.++.+.|...+                                      ..+  .
T Consensus       349 dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~  428 (579)
T KOG1125|consen  349 DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI  428 (579)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            466777777777777777777777777666654421                                      233  6


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ++.++..||.+|+-.|+|++|+.+|+.||..+|++...|-+||.++..-.+..+|+..|++||+|.|+.-.++.+++...
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            78889999999999999999999999999999999999999999999999999999999999999999766666655443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.68  E-value=2.4e-07  Score=78.38  Aligned_cols=89  Identities=17%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      .+..+.+++++|.+++..|++++|+..|.+++.+.++.   ..+++++|.++..+|+++.|+..|++++.+.|.+.....
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45678889999999999999999999999999987754   468999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhcC
Q 023491          117 LQARLKTQLSLA  128 (281)
Q Consensus       117 ~l~~l~~~l~~~  128 (281)
                      .++.+...++..
T Consensus       111 ~lg~~~~~~g~~  122 (172)
T PRK02603        111 NIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHcCCh
Confidence            888887666543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.67  E-value=5.1e-08  Score=97.24  Aligned_cols=118  Identities=11%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ++.+.+..|...+.+++|.+|..+|+..+.+   +|.....||++|.|.++++++..|..+|.+.+.++|++..+|-+++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls  560 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS  560 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence            4556666777788889999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|..+|+..+|...+.+|++.+-++-.++.+...+.....
T Consensus       561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG  601 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence            99999999999999999999999777777777666655443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.66  E-value=4.3e-07  Score=70.42  Aligned_cols=82  Identities=15%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS---EVYQNL  117 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~---~~a~~~  117 (281)
                      +..++.+|..++..|++++|+..|..++..+|++   ..+++.+|.+++..|++..|+..|++++...|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3568899999999999999999999999999876   5799999999999999999999999999999986   456666


Q ss_pred             HHHHHHHh
Q 023491          118 QARLKTQL  125 (281)
Q Consensus       118 l~~l~~~l  125 (281)
                      ++.+...+
T Consensus        82 ~~~~~~~~   89 (119)
T TIGR02795        82 LGMSLQEL   89 (119)
T ss_pred             HHHHHHHh
Confidence            66665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.65  E-value=1.7e-07  Score=84.96  Aligned_cols=121  Identities=23%  Similarity=0.253  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ++..+......++..+++.++...+..+.... ..+.++.+++.+|.++.+.|++++|+.+|.++++++|++..++..++
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34455566677788888888888888877541 13567888888999999999999999999999999999999888889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .+++.+|++.++...+.......|.++.++..++.+...++.
T Consensus       188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~  229 (280)
T PF13429_consen  188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR  229 (280)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred             HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence            889888999888888888888877777777777777666543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.64  E-value=1.3e-07  Score=96.72  Aligned_cols=121  Identities=17%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGA   80 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a   80 (281)
                      +|.|.-+-.--|.++-..|++..|+..|.++...   -...+.+|.|+|+||+.+|+|-.|++.|+.+++..  .++...
T Consensus       642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v  718 (1018)
T KOG2002|consen  642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV  718 (1018)
T ss_pred             CcchhhhccchhhhhhhccCchHHHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence            4667767777888999999999999999999886   44578899999999999999999999999998765  367899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +..||.+++..|.|.+|..++.+|+.+.|.+..+..+++.+...+.
T Consensus       719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888877654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.63  E-value=8.6e-08  Score=70.16  Aligned_cols=71  Identities=27%  Similarity=0.445  Sum_probs=61.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      |..+..+...|.+++..|+|++|+.+|.+++.+..    ..+..+.+++++|.|+..+|++++|+..+.+++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45577899999999999999999999999998853    234568899999999999999999999999998763

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.62  E-value=4.8e-07  Score=93.93  Aligned_cols=118  Identities=13%  Similarity=-0.003  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.+..++..+...+...+++++|+.....++..   .|....+|+.+|.++++.+++..|.-.  .++.+.+.+.    
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            6788999999999999999999999999999998   999999999999999999998887666  6666665555    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           79 ---------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        79 ---------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                                     .++|.+|.||-++|++.+|...|+++|+++|+|+.+.++++-.....
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence                           89999999999999999999999999999999999999888776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=2e-07  Score=81.80  Aligned_cols=118  Identities=19%  Similarity=0.109  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      -+..++++|..|-..|-+..|.-.|++++.+   .|..+.+++.+|..+...|+|+.|.+.|..+++++|.+--++.++|
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            3567888999888899999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+++--|+|.-|..++.+.-+-||+++--.-|+-.++..+.
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d  181 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD  181 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC
Confidence            99999999999999999999999999877777766665543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.61  E-value=1.1e-06  Score=81.75  Aligned_cols=113  Identities=19%  Similarity=0.296  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..+.++...++-.|++..|+...+..|.+   .|=++.+|-.|+.||...|+...||.++..+-++..++.+++|.++..
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L  232 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQL  232 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            34567778888899999999999999999   888999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      ++..|+.+.++...+.||+++|+..........+++
T Consensus       233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  233 LYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence            999999999999999999999997654444444444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.58  E-value=1.6e-06  Score=88.32  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=102.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      ++|.++.+++.+|.++-.+|+...|+..+..|..+   +|.+...|..++....++|++..|+-+|.+||+.+|.+.+..
T Consensus       168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL---~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~  244 (895)
T KOG2076|consen  168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL---NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI  244 (895)
T ss_pred             hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence            57899999999999999999999999999999998   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      +.++.+|.++|++..|+..|.+++.++|
T Consensus       245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  245 YERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.56  E-value=2.2e-06  Score=74.68  Aligned_cols=122  Identities=23%  Similarity=0.262  Sum_probs=100.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-----------DFKKAAEECTSVL   71 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-----------~y~~Ai~~~~~al   71 (281)
                      +|....+.+..|.++|..|+|..|+..|.+.+...|.++....+++.+|.+++.+.           ...+|+..|+.+|
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li  117 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI  117 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999999998888888899999999988754           3458999999999


Q ss_pred             HhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           72 ELDYNHT-----------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        72 ~i~p~~~-----------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ...|++.                 .--+..|..|++.|.|..|+..|+.+++--|+...+...+..+...
T Consensus       118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~  187 (203)
T PF13525_consen  118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA  187 (203)
T ss_dssp             HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            9999875                 2356679999999999999999999999999987776665555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.54  E-value=2.1e-06  Score=89.30  Aligned_cols=121  Identities=14%  Similarity=0.090  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.....+...|..+...|+|..|+.+|++++..   +|.++.+++.++.+|...+++.+|+..+.+++..+|.+... ..
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~  174 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MT  174 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HH
Confidence            334555555678888899999999999999998   88888888888999999999999999999999999875444 55


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++.++..++++.+|+..|++++.++|++..+...+..+...+...
T Consensus       175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            566666677777799999999999999998877776666655433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=5.6e-07  Score=82.07  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.||--|-++|.+|.+.|.|..|++.-..+|.+   +|....+|..+|.+|+-+|+|.+|+..|.++|.++|++....-
T Consensus       111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence            5788888889999999999999999999999999   9999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHcCCHH---HHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYN---SALFDVNRLIE  106 (281)
Q Consensus        83 ~lg~a~~~~g~~~---eAl~~~ekAL~  106 (281)
                      +|..+-..+++-.   .+...++-+..
T Consensus       188 nL~~Ae~~l~e~~~~~~~~~~~d~~~~  214 (304)
T KOG0553|consen  188 NLKIAEQKLNEPKSSAQASGSFDMAGL  214 (304)
T ss_pred             HHHHHHHHhcCCCcccccccchhhhhh
Confidence            8888877776655   44444444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.52  E-value=1.6e-06  Score=86.03  Aligned_cols=110  Identities=10%  Similarity=-0.014  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491            3 SPAAPANKIERAHQLYRDG--------RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g--------dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      +|.++.++-.++.++....        +...|.....+++.+ +.++..+.+|.-+|..+...|++++|...|.+|+.++
T Consensus       372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~  450 (517)
T PRK10153        372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE  450 (517)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            6888888888887775542        234455555555543 2266778889999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                      | +..+|..+|.++...|++++|+..|++|+.++|..+..
T Consensus       451 p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        451 M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            9 58899999999999999999999999999999998753

>PRK11906 transcriptional regulator; Provisional

Probab=98.52  E-value=2.3e-06  Score=82.54  Aligned_cols=111  Identities=8%  Similarity=-0.101  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQLYRD---------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~---------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +|..+.++-.++.|++..         ..-.+|+.+-.+|+.+   ++.++.++..+|.++...++++.|+..|++|+.+
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L  367 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH  367 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence            577788888888888765         2446788889999998   9999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      +|+.+.+||.+|.+++..|+.++|+..+++|++++|.-..+..
T Consensus       368 ~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        368 STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            9999999999999999999999999999999999997554433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=6e-06  Score=67.86  Aligned_cols=119  Identities=14%  Similarity=0.051  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALML   83 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~   83 (281)
                      +...+......+..+++..+...+...+...+..+....+.+.+|.+++..|+|++|+..|..++...++.   ..+.++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            45667777888889999999999999999833333447888999999999999999999999999987654   358999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.+++..|+|++|+..++. +.-.+-.+.+..+++.|....+
T Consensus        91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence            99999999999999999966 3333345566677777665544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.48  E-value=1.2e-06  Score=86.57  Aligned_cols=115  Identities=14%  Similarity=0.071  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .++.++...|..++|...+......|..   .|.+.......|..+..+|+-++|...+..+++.++.+.-||+-+|.++
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence            5677888888889999999888888887   7888888888888888899999999999999998888888999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ..-++|.+|+++|+.||.++|+|..++.-++.++.++.
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888887777665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.46  E-value=3.9e-06  Score=77.94  Aligned_cols=106  Identities=15%  Similarity=0.081  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------------------------------cCcccHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK----------------------------------IKQQKIALHSNRA   51 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----------------------------------~~p~~~~a~~nra   51 (281)
                      ..+....+|..++..|++..|+..+.+++...|                                  .+|....++..+|
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            445666778888888888888888887776511                                  2233334455677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      .+++.+|++.+|+..|++++.++|++..+++.+|.+++..|++++|+..|++++.+.|.+
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            788888888888888888888888888888888888888888888888888888887653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=6.4e-06  Score=73.83  Aligned_cols=121  Identities=21%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.+...++.+-...-.+|+-.+||+.....+..   -+.+..+|..++.+|+..|+|.+|+-+++.++-+.|-++.++.
T Consensus       116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~  192 (289)
T KOG3060|consen  116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ  192 (289)
T ss_pred             CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            5778888887778888899999999999999998   7888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKE---YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~---~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|.+++.+|.   +..|..+|.++|+++|.+-.++..+-.+-..+.
T Consensus       193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            99999998874   788999999999999965555544444444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=3e-06  Score=81.25  Aligned_cols=91  Identities=21%  Similarity=0.206  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .....+..++..++..+|+..+.++|..   .|.+..++...|..+++.++|+.|+..+.+++.+.|...++|+.||.+|
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y  278 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY  278 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            3344555666666666666666666665   5556666666666666666666666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHH
Q 023491           89 VTLKEYNSALFDVN  102 (281)
Q Consensus        89 ~~~g~~~eAl~~~e  102 (281)
                      ..+|+|+.|+..+.
T Consensus       279 i~~~d~e~ALlaLN  292 (395)
T PF09295_consen  279 IQLGDFENALLALN  292 (395)
T ss_pred             HhcCCHHHHHHHHh
Confidence            66666666665544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.40  E-value=3.6e-06  Score=82.91  Aligned_cols=122  Identities=23%  Similarity=0.234  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY------   75 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p------   75 (281)
                      +..+...|..|...++|.+|+.+|.+|+.+..     .+|..+.++.|+|.+|++.|+|.+|..+|++|++|-.      
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~  320 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS  320 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence            34455689999999999999999999998864     6788899999999999999999999999999998852      


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhcC
Q 023491           76 --NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN-----PSS---EVYQNLQARLKTQLSLA  128 (281)
Q Consensus        76 --~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld-----P~~---~~a~~~l~~l~~~l~~~  128 (281)
                        .-...+.+++.++..++++++|+..|++++++-     +.+   +.+..+++.+....+..
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~  383 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY  383 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence              223478889999999999999999999999973     233   45666677776666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.40  E-value=1.1e-05  Score=72.40  Aligned_cols=120  Identities=17%  Similarity=0.202  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---ALM   82 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~~   82 (281)
                      .+..|++.|...+..|+|.+|+..|......-+..|....+.+.++.++++.++|+.|+..+++-+++.|.++.   ++|
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            57889999999999999999999999999987777788999999999999999999999999999999998765   789


Q ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKE--------YNSALFDVNRLIELNPSSEV---YQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~--------~~eAl~~~ekAL~ldP~~~~---a~~~l~~l~~~l  125 (281)
                      .+|.+++..=+        ...|+..|+.++.--|+.+-   +...+..+...|
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L  166 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL  166 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence            99999876432        67899999999999998754   334444444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=1.1e-06  Score=81.28  Aligned_cols=114  Identities=18%  Similarity=0.031  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .+++.+.+.|.|++-.++|+-++..|.+|+.........+.+|||+|.+..-.|++.-|..+|+-++..++++.+++-+|
T Consensus       356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL  435 (478)
T KOG1129|consen  356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL  435 (478)
T ss_pred             CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence            36778889999999999999999999999998776677899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      |..-.+.|+...|...|..|-.+.|.-.+...++
T Consensus       436 avL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl  469 (478)
T KOG1129|consen  436 AVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL  469 (478)
T ss_pred             HHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence            9999999999999999999999999765544443

>PRK11906 transcriptional regulator; Provisional

Probab=98.37  E-value=6.9e-06  Score=79.29  Aligned_cols=117  Identities=11%  Similarity=0.002  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCC
Q 023491            9 NKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL---------HDFKKAAEECTSVLELDYN   76 (281)
Q Consensus         9 ~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl---------g~y~~Ai~~~~~al~i~p~   76 (281)
                      .++.+|...+..+   ....|+.+|.+++...+.+|..+.+|..+|.|++..         ....+|+....+|+++++.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            5577888887765   457789999999933333999999999999999865         2456788999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++.+++.+|.++...++++.|+..|++|+.++|+.+.++...+.+.-.-
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~  385 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN  385 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999998888766553

>TIGR00540 hemY_coli hemY protein

Probab=98.37  E-value=8.7e-06  Score=78.20  Aligned_cols=119  Identities=15%  Similarity=-0.037  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIAL--HSNRAACYLKLHDFKKAAEECTSVLELDYNHT--GA   80 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a--~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~--~a   80 (281)
                      .++..+...|..+...|++++|+..+.+++..   .|.+...  ..-+....+..++...++..++++++..|+++  ..
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~l  337 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCI  337 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence            58889999999999999999999999999998   6665532  13344444557889999999999999999999  88


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           81 LMLRAQTLVTLKEYNSALFDVN--RLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~e--kAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +..+|.+++++|+|.+|..+|+  .++.+.|+..... .++.+...++.
T Consensus       338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~  385 (409)
T TIGR00540       338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD  385 (409)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence            8899999999999999999999  6888999887655 66767665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.37  E-value=6.3e-06  Score=82.98  Aligned_cols=118  Identities=17%  Similarity=0.090  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .|...|..+.+.+.-++|..+..++-.+   .+..+..|+.+|.++...|.+.+|.+.|..++.++|+++.+.-.+|.++
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3446677777888889999999999998   9999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           89 VTLKEYNSALF--DVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        89 ~~~g~~~eAl~--~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      ...|+-.-|..  .+..+++++|.|+.+|..++.+.++++...
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            99999888888  999999999999999999999998876553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=9.9e-07  Score=85.68  Aligned_cols=116  Identities=24%  Similarity=0.195  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK---LHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k---lg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      |.+++..+..|+..|..+.+..|+.+|.+++..   .|....+|.|+|.++++   .|+--.|+.+|..+++++|...++
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            446778889999999999999999999999998   89999999999999998   458889999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +|+|+.++..++++.+|+.+...+....|.+........-+.
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~  489 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLP  489 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccc
Confidence            999999999999999999999887778886655444433333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.35  E-value=3.7e-06  Score=82.84  Aligned_cols=107  Identities=20%  Similarity=0.235  Sum_probs=95.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY-   75 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p-   75 (281)
                      -+|.-+..+.++|..|++.|+|.+|..++.+|+.+..     ..+.-+..+.+++.++..+++|++|+..+.+++++.- 
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~  357 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD  357 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            3567788999999999999999999999999999875     4566788899999999999999999999999988742 


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           76 -------NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        76 -------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                             .-+..+-++|.+|+.+|+|.+|...|++|+.+.
T Consensus       358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                   335689999999999999999999999999975

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.2e-05  Score=76.43  Aligned_cols=121  Identities=16%  Similarity=0.089  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHH----------------
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEE----------------   66 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~----------------   66 (281)
                      +|.+...++.+|+.+...|+..+|+-.|..|+.+   .|.+...|-.+-.||+..|.+.+|.-.                
T Consensus       330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt  406 (564)
T KOG1174|consen  330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT  406 (564)
T ss_pred             CcccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence            5778899999999999999999999999999999   888899999999999888886655444                


Q ss_pred             --------------------HHHHHHhcCCCHHH---------------------------------HHHHHHHHHHcCC
Q 023491           67 --------------------CTSVLELDYNHTGA---------------------------------LMLRAQTLVTLKE   93 (281)
Q Consensus        67 --------------------~~~al~i~p~~~~a---------------------------------~~~lg~a~~~~g~   93 (281)
                                          ++++++++|.+..+                                 +--||.++...+.
T Consensus       407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE  486 (564)
T ss_pred             hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence                                44444444555433                                 3345556666666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +++|+..|..||+++|.+......+.++++...
T Consensus       487 ~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  487 PQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            777777788888888888777777777766544

>TIGR00540 hemY_coli hemY protein

Probab=98.35  E-value=2.3e-05  Score=75.24  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=49.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 023491           12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRAQTLVT   90 (281)
Q Consensus        12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg~a~~~   90 (281)
                      ..|...+..|+|..|.+.+.++...   .|.....+...|.++.++|+++.|...+.++.+..|++. .+...++.++..
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            3444444445555555555444443   333334444444444444555555555544444444432 233333444444


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           91 LKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        91 ~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      .|+++.|+..++++++..|+++.+...+..+
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~  196 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEA  196 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4555555555555555555444444443333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.34  E-value=2e-05  Score=70.82  Aligned_cols=120  Identities=9%  Similarity=0.074  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC------------------HHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD------------------FKKAAEEC   67 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~------------------y~~Ai~~~   67 (281)
                      ...+.+..|.++++.++|..|+..|++.+...|.+|....+++.+|.|++.++.                  ...|+..|
T Consensus        68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~  147 (243)
T PRK10866         68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF  147 (243)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence            445568999999999999999999999999988888889999999999866651                  35788999


Q ss_pred             HHHHHhcCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           68 TSVLELDYNHTG-----------------ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        68 ~~al~i~p~~~~-----------------a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +.+|+..|++.-                 --+..|..|++.|.|..|+.-++.+++--|+.+.....+..+....
T Consensus       148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay  222 (243)
T PRK10866        148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY  222 (243)
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            999999998751                 3456788899999999999999999999999777666666554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.32  E-value=7.3e-06  Score=81.48  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=108.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      ++|++-+.++..-...+.+.+|+.|..+|.++-..    .-...+|+.-+....-+++.++|+..|+.+|+..|.+.+.|
T Consensus       613 ~~pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~  688 (913)
T KOG0495|consen  613 ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW  688 (913)
T ss_pred             hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence            57888888888888889999999999999998774    34567888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.+|+++.++++.+.|...|...++.-|.....+.++++|..+..
T Consensus       689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999887764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1e-05  Score=74.71  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      ...++..+-..|...++|.+||..-.+.+.+.+  ..-..+.+|.-+|..++...+++.|+..+.+|+..+|+..++-..
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII  219 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence            344556666777777777777777776666522  112347788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~-~~a~~~l~~l~~~l~  126 (281)
                      +|.++...|+|+.|+..|+++++.||.. +++...+..+...++
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999974 455555555555554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.5e-06  Score=78.40  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..+.+.+.|+++.++|..|+..-.++|.+   +|.+..++|.+|.|++.+|+|+.|+.+|.++++++|.|-.+...+..+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35778999999999999999999999999   999999999999999999999999999999999999998888887777


Q ss_pred             HHHcCCHHHH-HHHHHHHHH
Q 023491           88 LVTLKEYNSA-LFDVNRLIE  106 (281)
Q Consensus        88 ~~~~g~~~eA-l~~~ekAL~  106 (281)
                      ..+...+.+. .+.|.+.+.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            7666555544 445554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.29  E-value=1.8e-05  Score=78.59  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=97.5

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh-
Q 023491            6 APANKIERAHQLYRDGR---YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH--------DFKKAAEECTSVLEL-   73 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gd---y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg--------~y~~Ai~~~~~al~i-   73 (281)
                      ++-.++.+|..++..+.   +..|+.+|++|+.+   +|..+.++..++.||....        +...+.....+++.+ 
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            45567788988887765   88999999999999   9999999999998886643        244556666666554 


Q ss_pred             -cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           74 -DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        74 -~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                       ++..+.+|.-+|.++...|++++|...|++|+.++|+ ..++.+++++....+..
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~  469 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDN  469 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCH
Confidence             7778899999999999999999999999999999994 67888888887766543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.26  E-value=2.3e-05  Score=75.06  Aligned_cols=117  Identities=13%  Similarity=0.040  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++......|..+...|++.+|...+.+++..   .+ +..+...++.+  ..+++.+++..++..++.+|+++..++.
T Consensus       260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~  333 (398)
T PRK10747        260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST  333 (398)
T ss_pred             hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence            557888889999999999999999999999984   33 33333333333  4599999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.++...|+|.+|...|++++.+.|++... ..++.+...++.
T Consensus       334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~  376 (398)
T PRK10747        334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHK  376 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC
Confidence            9999999999999999999999999998763 356666665543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.1e-05  Score=71.99  Aligned_cols=101  Identities=15%  Similarity=0.051  Sum_probs=89.0

Q ss_pred             CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHH
Q 023491           22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK---EYNSAL   98 (281)
Q Consensus        22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g---~~~eAl   98 (281)
                      ..+..+.-++..|..   +|.++.-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++...   ...+|.
T Consensus       137 ~~~~l~a~Le~~L~~---nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         137 EMEALIARLETHLQQ---NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             cHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            355666677777887   99999999999999999999999999999999999999999999999987764   378899


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           99 FDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        99 ~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ..|+++|.++|.|..+..+++.-....
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~  240 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQ  240 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            999999999999999988887665443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.24  E-value=2.3e-06  Score=63.73  Aligned_cols=61  Identities=25%  Similarity=0.417  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      +...++.+|.++|+.|+|.+|+..+.+ +..   ++....+++.+|.|++++|+|++|+..|.++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            456777899999999999999999999 666   7777888888999999999999999999875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.24  E-value=5.6e-05  Score=72.48  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNR-AACYLKLHDFKKAAEECTSVLELDYNHTG-ALMLRAQT   87 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nr-a~~~~klg~y~~Ai~~~~~al~i~p~~~~-a~~~lg~a   87 (281)
                      .+..|..++..|+|..|.++...+...    ...+.+++.+ +.+..+.|+++.|...|.++.+.+|++.- .....+.+
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            345555666666666666555544432    2223333333 33336666666666666666666665532 33334666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +...|+++.|+..++++++.+|+++.+...+..+.
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            66666666666666666666666665555554444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=4.7e-06  Score=83.53  Aligned_cols=121  Identities=16%  Similarity=0.204  Sum_probs=106.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.....|+..|.++++.+++..|+..|+.++.+   +|.++.+|+|++.+|+++++-.+|...+..|++-+-.++..|-
T Consensus       515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE  591 (777)
T KOG1128|consen  515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE  591 (777)
T ss_pred             CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence            6889999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      |.-.+....|.++.|+..|.+.+.+.-....-......+...+.
T Consensus       592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~  635 (777)
T KOG1128|consen  592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE  635 (777)
T ss_pred             chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence            99999999999999999999999875443333333333444333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1e-05  Score=79.13  Aligned_cols=118  Identities=9%  Similarity=0.037  Sum_probs=107.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      -|..+-.|+..|.-|+.-|.+.+|..+|.++..+   ++....+|...|+.+.-.|+-++|+.+|..|-++-+.....++
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l---D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L  384 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL---DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL  384 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc---CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence            3778888999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .+|.=|.+++++.-|-+.|..|+.+.|.++-+...++-|.-
T Consensus       385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay  425 (611)
T KOG1173|consen  385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY  425 (611)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence            99999999999999999999999999998887766665544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=3.7e-05  Score=71.11  Aligned_cols=111  Identities=19%  Similarity=0.125  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRA   85 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg   85 (281)
                      |+.+.++|..+....+.+.|+..+.+|+..   +|.+..+-..+|.+++..|+|.+|++.++.+++-+|.+. .++-.|.
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            456778899999999999999999999998   999999999999999999999999999999999999875 6888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      .||.++|+.++.+..+.++.+..++......+...
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l  291 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL  291 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence            99999999999999999999999886655444333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.16  E-value=1.7e-05  Score=82.64  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----------------CcccHHHHHHHHHHHHHcCCHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI----------------KQQKIALHSNRAACYLKLHDFKKAAEE   66 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----------------~p~~~~a~~nra~~~~klg~y~~Ai~~   66 (281)
                      +|.....++..|..++..+++..|.-.  .++...+.                .+.+-.+++.+|.||-++|++++|...
T Consensus        61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~  138 (906)
T PRK14720         61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV  138 (906)
T ss_pred             CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence            678888899999999998888877766  55555221                223337899999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           67 CTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        67 ~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      |+++|+++|.++.++-++|-.|... +++.|+..+.+|+...=+
T Consensus       139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999 999999999999887433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=7.8e-05  Score=64.42  Aligned_cols=118  Identities=23%  Similarity=0.275  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALML   83 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~   83 (281)
                      +.+..+.+|+.+...|+|.+|..+|.+++.-  .-..++..++.++.+.+..+++..|...++.+++.+|.  .+..++.
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            4556778999999999999999999999984  23467889999999999999999999999999999984  5678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.+|...|.+..|...|+.++..-|+-. .+-..+.+...++
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg  207 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG  207 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence            99999999999999999999999998754 4444444444433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.11  E-value=6e-06  Score=50.80  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      .+|+++|.++..+|++.+|+.+|+++|+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.10  E-value=3.9e-05  Score=69.87  Aligned_cols=75  Identities=13%  Similarity=0.107  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      .+.+++-+|.+++..|+|..|+..|..++...+.++....+++.+|.++..+|++++|+..|..+++..|++..+
T Consensus       179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            368999999999999999999999999999877777889999999999999999999999999999999988754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.09  E-value=6.1e-05  Score=68.90  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------
Q 023491            7 PANKIERAHQLYRD-GRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------   76 (281)
Q Consensus         7 a~~l~~~G~~~~~~-gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------   76 (281)
                      +..+...|..+... |+++.|+.+|.+|+.+.....   ....++.++|.++.++|+|.+|+..|++++...-.      
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            56677788888888 899999999999999876222   33667889999999999999999999999875321      


Q ss_pred             CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           77 HT-GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        77 ~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      +. ..++..+.|++.+|++..|...|++....+|..
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            12 356778889999999999999999999999864

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.09  E-value=2.5e-05  Score=77.52  Aligned_cols=121  Identities=16%  Similarity=0.104  Sum_probs=107.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      -|...+.+-.+|..+...|+-++|..+-..++..   ++....+|--+|.++..-++|++||.+|+.|+.+.++|...|.
T Consensus        37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr  113 (700)
T KOG1156|consen   37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR  113 (700)
T ss_pred             CCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3566777888999999999999999999999997   8888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      -++....++++|+..+..-.+.|++.|.....|...+...-.++
T Consensus       114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g  157 (700)
T KOG1156|consen  114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG  157 (700)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877766665554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.08  E-value=5.9e-05  Score=60.71  Aligned_cols=82  Identities=21%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQ  118 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~---~~~a~~~l  118 (281)
                      .+.|++|.++-.+|+..+|+..|++++......   ..+++.+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999976443   579999999999999999999999999999898   77777666


Q ss_pred             HHHHHHhh
Q 023491          119 ARLKTQLS  126 (281)
Q Consensus       119 ~~l~~~l~  126 (281)
                      +.+...++
T Consensus        82 Al~L~~~g   89 (120)
T PF12688_consen   82 ALALYNLG   89 (120)
T ss_pred             HHHHHHCC
Confidence            65554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.07  E-value=5.4e-05  Score=69.86  Aligned_cols=120  Identities=13%  Similarity=-0.030  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH--DFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg--~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      +.+.....-.++++.++++.|.+.+...-..   +.....+.+.-|.+.+..|  .+..|...|+.+....+.++..+..
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng  206 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNG  206 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence            4556666678889999999999998887766   5555555555555555666  5999999999987777788889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +|.|++.+|+|++|...++.++..+|.++.+..++..+...++..
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999888887777666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=3.1e-05  Score=73.65  Aligned_cols=112  Identities=15%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      ..+..|+..|...|..++|..|+.+-.++|..   ++.+..++...|.++..+|+...|+-.|+.|+.+.|...++|-.|
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL  374 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGL  374 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            35667888899999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      -.+|...|++.+|...-+.++...|.+.....+++
T Consensus       375 ~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  375 FHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            99999999999888888888887777777666653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.05  E-value=1.3e-05  Score=49.02  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      .+|+.+|.+++.+|++++|+.+|++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=5e-05  Score=71.18  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=72.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhc----
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV--------------LELD----   74 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--------------l~i~----   74 (281)
                      .|.|+|+.|+|++|+..|+-+...   +.....++.|+|.|++-+|.|.+|...-.++              .+++    
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence            488999999999999999999886   7777888888999998888877776654433              1111    


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           75 --------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        75 --------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                              .+..+--+.||-+++..-.|++|+..|.++|.-+|+.-.+-..++.+..+
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence                    11112334455555555667777777777776666544444444444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.03  E-value=1.3e-05  Score=52.64  Aligned_cols=39  Identities=18%  Similarity=0.114  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      +++.+|.+|..+|++++|+..|+++++.+|++..++..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            344445555555555555555555555555554444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.02  E-value=1.4e-05  Score=52.45  Aligned_cols=42  Identities=26%  Similarity=0.154  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.+++.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467889999999999999999999999999999999999885

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.01  E-value=0.00018  Score=58.75  Aligned_cols=99  Identities=22%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-------------------IKQQKIALHSNRAACYLKLHDFKKAAEECTS   69 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~   69 (281)
                      .+...|......++...++..+.+++.+..                   .......+...++.++...|++..|+..|.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            345567777888999999999999998863                   1123345566777888899999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           70 VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        70 al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ++.++|-+-.+|..+-.+|..+|+...|+..|+++...
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.00  E-value=1.2e-05  Score=49.39  Aligned_cols=34  Identities=29%  Similarity=0.397  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +.+|+++|.+|+.+|+|++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.00  E-value=2.3e-05  Score=71.68  Aligned_cols=102  Identities=23%  Similarity=0.256  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCc-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcC--CC---
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQ-QKIALHSNRAACYLKL-HDFKKAAEECTSVLELDY--NH---   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p-~~~~a~~nra~~~~kl-g~y~~Ai~~~~~al~i~p--~~---   77 (281)
                      +...+..+..+++..++.+|+.+|.+++.+..  ..+ .-+.++.++|.+|... |+++.|+..|.+|+.+..  +.   
T Consensus        74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen   74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence            33444455555666699999999999998765  222 3477889999999888 999999999999987742  12   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           78 -TGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                       ..++..+|.++..+|+|.+|+..|+++....
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence             3578899999999999999999999998854

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.98  E-value=7.6e-06  Score=51.06  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=27.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491           67 CTSVLELDYNHTGALMLRAQTLVTLKEYNSAL   98 (281)
Q Consensus        67 ~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl   98 (281)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67888888888888888888888888888876

>PRK15331 chaperone protein SicA; Provisional

Probab=97.96  E-value=5.6e-05  Score=63.86  Aligned_cols=88  Identities=10%  Similarity=-0.066  Sum_probs=78.5

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .+......|..|.-++..|+|++|...|+.+..+++-+++.++.||.|+..+++|+.|+..|-.|..++++++......+
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            45567778899999999999999999999999999999999999999999999999999999999999998887777777


Q ss_pred             HHHHHhhc
Q 023491          120 RLKTQLSL  127 (281)
Q Consensus       120 ~l~~~l~~  127 (281)
                      .+.-.++.
T Consensus       113 qC~l~l~~  120 (165)
T PRK15331        113 QCQLLMRK  120 (165)
T ss_pred             HHHHHhCC
Confidence            66665543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.94  E-value=5.4e-05  Score=52.15  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .++|.+|..++++|+|..|+.+.+.+|++.|+|..+..+...+...+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999887654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.92  E-value=0.0003  Score=67.55  Aligned_cols=105  Identities=23%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491           18 YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA   97 (281)
Q Consensus        18 ~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA   97 (281)
                      ...++|+.|+..|++....   +|.   +...++.+++..++..+|+..+.++|...|.+...+...|..+...++++.|
T Consensus       180 ~~t~~~~~ai~lle~L~~~---~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRER---DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             hhcccHHHHHHHHHHHHhc---CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3457999999999998886   654   5566899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           98 LFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +...++++.+.|.+-..|..++.+.-.++..
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999998877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.90  E-value=0.00013  Score=67.37  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 023491           12 ERAHQLYRDG--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLV   89 (281)
Q Consensus        12 ~~G~~~~~~g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~   89 (281)
                      ..|-..+..|  .+.+|...|......   .+..+.+++.+|.|++.+|+|++|...+..++..+|.++.++.+++.+..
T Consensus       170 a~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  170 AEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            3344445555  699999999997665   56788899999999999999999999999999999999999999999999


Q ss_pred             HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           90 TLKEY-NSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        90 ~~g~~-~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      .+|+- +.+.+.+.++...+|.++-+..+..+
T Consensus       247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~  278 (290)
T PF04733_consen  247 HLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK  278 (290)
T ss_dssp             HTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99998 55667788888899998877665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.86  E-value=4.3e-05  Score=46.59  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +.+++.+|.+++++|+|++|+.+|.++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578889999999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.84  E-value=1.5e-05  Score=74.24  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .-.+|+-||++|.|++||.+|.++|.++|.++..+.++|.+|++++.|..|..++..|+.|+-..-.++...+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999865444433333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.0017  Score=62.74  Aligned_cols=122  Identities=16%  Similarity=0.061  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--------------------------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--------------------------   59 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--------------------------   59 (281)
                      +++++++.++.|-...+..+|+++|.++..+   -|.++..+..+|..|-+.|+                          
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            6677777777777777777777777777776   55555555555555555554                          


Q ss_pred             --------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491           60 --------FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI  130 (281)
Q Consensus        60 --------y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~  130 (281)
                              .++||.+|+++--+.|+..+--+..+.|+.+.|+|+.|+..|+...+..|.+-.....+-++...++....
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~  712 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDA  712 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhH
Confidence                    67888888888888887777777889999999999999999999999999988888888888777766544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0004  Score=60.16  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGALMLRAQ   86 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~~~lg~   86 (281)
                      -...+.+..++..++++.|+..+..++...........+-.++|.+.+++|.+++|+..+.....  +. .+.....+|.
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence            34567899999999999999999999975333334567789999999999999999998876632  11 2234677899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                      ++...|+-.+|+..|++++..++.....
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~~~~  195 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASPAAR  195 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCChHHH
Confidence            9999999999999999999998554433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.83  E-value=0.00015  Score=59.86  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC---------------HHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD---------------FKKAAEEC   67 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~---------------y~~Ai~~~   67 (281)
                      +|...++.+.+|-++|+.++|..|+..|.+.|++-|.+|.-.-+++.+|++++.+..               ...|...|
T Consensus        43 g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f  122 (142)
T PF13512_consen   43 GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDF  122 (142)
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHH
Confidence            466788899999999999999999999999999977778888999999999999987               89999999


Q ss_pred             HHHHHhcCCCHHH
Q 023491           68 TSVLELDYNHTGA   80 (281)
Q Consensus        68 ~~al~i~p~~~~a   80 (281)
                      ..+|+..|++.-+
T Consensus       123 ~~lv~~yP~S~ya  135 (142)
T PF13512_consen  123 EQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHCcCChhH
Confidence            9999999987643

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=2.2e-05  Score=73.27  Aligned_cols=121  Identities=22%  Similarity=0.285  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK----------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      +...+.|+..|+.++|..|+..|.+++....                ........+.|++.|-++++.+..|+..+..++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            3445678899999999999999999988743                122345667889999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +.++....+||++|.++..+.++.+|++++..+....|++..+...+..++......
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            999999999999999999999999999999999999999999988888887766544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.00031  Score=61.34  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=66.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           49 NRAACYLKLHDFKKAAEECTSVLELDYNHT-----GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        49 nra~~~~klg~y~~Ai~~~~~al~i~p~~~-----~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .-|.-+|+.|+|.+|..-|..||.+.|..+     -+|.++|.|+++++.++.|+..+.++|+|+|.+..+....+.+..
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            368899999999999999999999998754     379999999999999999999999999999987766665555544


Q ss_pred             Hh
Q 023491          124 QL  125 (281)
Q Consensus       124 ~l  125 (281)
                      .+
T Consensus       180 k~  181 (271)
T KOG4234|consen  180 KM  181 (271)
T ss_pred             hh
Confidence            44

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.79  E-value=8.2e-05  Score=76.99  Aligned_cols=80  Identities=20%  Similarity=0.174  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      |..||..|+..+++.+|+.+|+.+++++|.+..+|..+|.+|...|.|..|++.|.+|..++|.+--.+...+.++..++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            34466666666666666666666666666666666666666666666666666666666666666555555555544443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.79  E-value=0.0002  Score=68.38  Aligned_cols=121  Identities=16%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY------NHT   78 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p------~~~   78 (281)
                      .++-+.|+++.-.|.|..|+++|..++.++-   .....+...|.+|.+|.-+++|.+||.++.+-|.|..      ...
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            3556789999999999999999999887643   2345577789999999999999999999988776653      345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhhcC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELN-----PS-SEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld-----P~-~~~a~~~l~~l~~~l~~~  128 (281)
                      ++++.||+++-.+|..+.|+.+.+..+++.     +. .-.++.++..+...+...
T Consensus       316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            799999999999999999999988888763     32 445677777776666543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.76  E-value=8.6e-05  Score=76.86  Aligned_cols=110  Identities=16%  Similarity=0.052  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .|..+|-.+...+++..|+..|+-+++.   +|.+..+|..+|.+|...|.|.-|++.|.+|..++|.+.-+-|..+.+.
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e  640 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME  640 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence            4556888899999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +.+|+|.+|+..+...+.........+.-++.+
T Consensus       641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~  673 (1238)
T KOG1127|consen  641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAES  673 (1238)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999999999999999988766655555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.74  E-value=0.00042  Score=69.31  Aligned_cols=114  Identities=17%  Similarity=-0.005  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      +...++..++.....+..++|+.+++.+|..   -|....+|+.+|.++.++++.+.|...|...++..|.....|..|+
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            4566777778888889999999999999998   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      .+-.+.|+.-.|...|.++...+|.+..++-..-++.
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            9999999999999999999999999987655443333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.73  E-value=0.00018  Score=61.55  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=56.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-----------H
Q 023491            2 ASPAAPANKIERAHQLYRDG----------RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-----------F   60 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~g----------dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-----------y   60 (281)
                      .||.+++.|..-|.+++...          .+.+|+..|+.||.+   +|....+++++|.+|+.++.           |
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F   96 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF   96 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence            37999999999999988763          456788888888898   99999999999999988764           6


Q ss_pred             HHHHHHHHHHHHhcCCCH
Q 023491           61 KKAAEECTSVLELDYNHT   78 (281)
Q Consensus        61 ~~Ai~~~~~al~i~p~~~   78 (281)
                      ++|..+|.+|...+|.+.
T Consensus        97 ~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   97 EKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHhcCCCcH
Confidence            777777777777777654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.73  E-value=0.0018  Score=52.15  Aligned_cols=99  Identities=28%  Similarity=0.336  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAA-CYLKLHDFKKAAEECTSVLELDY---NHTGALMLR   84 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~-~~~klg~y~~Ai~~~~~al~i~p---~~~~a~~~l   84 (281)
                      .+...|......+.+..|+..+..++..   .+.........+. +++..|++..|+..|.+++...+   .....++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  173 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL  173 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence            3344444444444444444444444443   2222222222222 44444444444444444444333   233334444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      +..+...+++..|+..+.+++...+.
T Consensus       174 ~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         174 GALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             hhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            44444444444444444444444444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00056  Score=67.58  Aligned_cols=109  Identities=19%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----------------
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----------------   74 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----------------   74 (281)
                      ++++-|+|+.+..++|+..++   ..   ++.+..+.--+|.++|++|+|++|+..|..+++.+                
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~  156 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA  156 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            688999999999999999988   22   44555566669999999999999999999986554                


Q ss_pred             --------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Q 023491           75 --------------Y-NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL--------NPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        75 --------------p-~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l--------dP~~~~a~~~l~~l~~~l  125 (281)
                                    | ++...+||.|.++...|+|..|++.+++|+++        +-+...+...+..|+-++
T Consensus       157 a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  157 AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence                          2 24467899999999999999999999999554        222344555555554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00042  Score=68.43  Aligned_cols=111  Identities=23%  Similarity=0.223  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.+..+++..-.++...+.|++|+.+-..-..    ......++|-.|.|+|+++..++|+.++.   ..++.....+..
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L  115 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL  115 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence            66777777777788888888888744222111    12233444789999999999999999998   456677789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSS--EVYQNLQARL  121 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~--~~a~~~l~~l  121 (281)
                      +|++++++|+|++|+..|+.+++-+-++  ...+.++..+
T Consensus       116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~  155 (652)
T KOG2376|consen  116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV  155 (652)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            9999999999999999999998866553  3344443333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.69  E-value=0.00041  Score=61.36  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=93.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.-+.++.-.|.-+...|+|+.|.+.|...+.+   +|..--++.|||.+++--|+|.-|..++.+-..-+|+++    
T Consensus        95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L  171 (297)
T COG4785          95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL  171 (297)
T ss_pred             CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence            5888999999999999999999999999999999   999999999999999999999999999988777765544    


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 023491           79 ------------------------------------------------------------------GALMLRAQTLVTLK   92 (281)
Q Consensus        79 ------------------------------------------------------------------~a~~~lg~a~~~~g   92 (281)
                                                                                        ++||.+|..+...|
T Consensus       172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G  251 (297)
T COG4785         172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG  251 (297)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence                                                                              48999999999999


Q ss_pred             CHHHHHHHHHHHHHhC
Q 023491           93 EYNSALFDVNRLIELN  108 (281)
Q Consensus        93 ~~~eAl~~~ekAL~ld  108 (281)
                      +..+|...|.-++.-+
T Consensus       252 ~~~~A~~LfKLaiann  267 (297)
T COG4785         252 DLDEATALFKLAVANN  267 (297)
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            9999999998887654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.69  E-value=3.9e-05  Score=73.10  Aligned_cols=99  Identities=22%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC--CHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----DYN--HTGA   80 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----~p~--~~~a   80 (281)
                      +=++|+.||-.|+|+.||.....-|.++.   .....-.++.|+|.||.-+|+|..|++.|...+.+    ...  .+..
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            44678899999999999999888887754   22334578999999999999999999999987544    333  3456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                      .|.||++|.-++.++.||.++++-|.+.
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999888764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.66  E-value=0.0026  Score=57.30  Aligned_cols=125  Identities=18%  Similarity=0.220  Sum_probs=104.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhc
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--------FKKAAEECTSVLELD   74 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--------y~~Ai~~~~~al~i~   74 (281)
                      +|..-++.++.+-++++.++|++|+....+.|.+.|.+|+-.-+++.+|.+++..-+        ...|+..|..+|...
T Consensus        67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry  146 (254)
T COG4105          67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY  146 (254)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence            567788999999999999999999999999999988889999999999999887443        567888899999998


Q ss_pred             CCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           75 YNHT-----------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        75 p~~~-----------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      |++.                 .-=+..|..|.+.|.|-.|+.-++.+++--|+...+...+..+......
T Consensus       147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            8764                 1234458889999999999999999999988877777777766665543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.66  E-value=0.00057  Score=56.01  Aligned_cols=78  Identities=24%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHh
Q 023491           50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS----EVYQNLQARLKTQL  125 (281)
Q Consensus        50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~----~~a~~~l~~l~~~l  125 (281)
                      .|.++...|+++.|++.|.++|.+.|.++.+|-++++++.-.|+-++|+.++.+|+++.-+.    ..+....+.+.+.+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            77888899999999999999999999999999999999999999999999999999997542    23444455555555


Q ss_pred             hc
Q 023491          126 SL  127 (281)
Q Consensus       126 ~~  127 (281)
                      ..
T Consensus       129 g~  130 (175)
T KOG4555|consen  129 GN  130 (175)
T ss_pred             Cc
Confidence            43

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.00032  Score=65.93  Aligned_cols=105  Identities=19%  Similarity=0.233  Sum_probs=85.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE   93 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~   93 (281)
                      ..++.+.+|..|+.+++-.+..   +. ....+-.-+|.|++++|+|++|+..|+.+...+....+.+.+||.|++-+|.
T Consensus        30 edfls~rDytGAislLefk~~~---~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNL---DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhcc---chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence            3567788999999998887765   33 2346677799999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      |.+|.....+|    |.++--..++-.+.-++.
T Consensus       107 Y~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen  107 YIEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            99998776654    777766666666655543

>PRK10941 hypothetical protein; Provisional

Probab=97.64  E-value=0.00081  Score=61.43  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .....|+=.+|++.++|..|+.+++.++.+.|+++.-+.-+|.+|.++|.+..|+.+|+..++..|+++.+...+..+..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999988887777665


Q ss_pred             Hh
Q 023491          124 QL  125 (281)
Q Consensus       124 ~l  125 (281)
                      .-
T Consensus       261 l~  262 (269)
T PRK10941        261 IE  262 (269)
T ss_pred             Hh
Confidence            53

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.64  E-value=0.00089  Score=53.78  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=77.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-------   74 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-------   74 (281)
                      ...|...+..|.|.+|...|.+|+..+.         .+-.++-++..++.++..+|+|++++.....+|...       
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            3556777888999999999999999864         222457778889999999999999999999998663       


Q ss_pred             CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           75 YN----HTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        75 p~----~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+    +..+-|++|.++..+|..++|+..|+.+.+.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            22    2347899999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.00018  Score=66.22  Aligned_cols=95  Identities=22%  Similarity=0.293  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCC--
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----YNH--   77 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p~~--   77 (281)
                      ..++...++.|+..|+.|+|+.|++.|+.|+..   ....+.+-||+|.|+++.|+|..|+...+.+|+..    |..  
T Consensus       141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             CCccchhccchheeeccccHHHHHHHHHHHHhh---cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            357888999999999999999999999999998   77788888999999999999999999998887653    211  


Q ss_pred             -----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 023491           78 -----------------------TGALMLRAQTLVTLKEYNSALFDV  101 (281)
Q Consensus        78 -----------------------~~a~~~lg~a~~~~g~~~eAl~~~  101 (281)
                                             .+++-..+.++++.|+++.|...+
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                                   136666688899999999887765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.60  E-value=0.0052  Score=49.48  Aligned_cols=103  Identities=27%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q 023491           16 QLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGALMLRAQTLVTL   91 (281)
Q Consensus        16 ~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~~~lg~a~~~~   91 (281)
                      +++..|++..|+..|.+++..   .+   .....+..++..+...+++..|+..+..++...+. ....+..++.++...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            789999999999999999775   54   46677777888788999999999999999999999 799999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           92 KEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        92 g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +.+..|+..+..++...|........+..+
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            999999999999999999844444444333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.59  E-value=0.0013  Score=53.86  Aligned_cols=88  Identities=18%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           41 QQKIALHSNRAACYLKLH---DFKKAAEECTSVLE-LDYN-HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~-i~p~-~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      .......+++|.|+.+..   +..+.|..++.+++ -.|. .-.++|+||..++++|+|..|+.++..+|+..|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            445677889999988765   46778899999986 3443 457999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 023491          116 NLQARLKTQLSLA  128 (281)
Q Consensus       116 ~~l~~l~~~l~~~  128 (281)
                      .+...++.++...
T Consensus       109 ~Lk~~ied~itke  121 (149)
T KOG3364|consen  109 ELKETIEDKITKE  121 (149)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.55  E-value=0.00016  Score=44.14  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ++|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666666666666666666666666666663

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.53  E-value=0.0022  Score=63.74  Aligned_cols=104  Identities=20%  Similarity=0.161  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      .+.+.-+..++...|+|.+|+.++......   -.+...++-.+|.+++++|++++|...|..+|..+|++...|..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~   80 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            456667788999999999999999988776   66778889999999999999999999999999999999999999998


Q ss_pred             HHHHcC-----CHHHHHHHHHHHHHhCCCCHH
Q 023491           87 TLVTLK-----EYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        87 a~~~~g-----~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      ++.-..     ....-+..|.......|....
T Consensus        81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~  112 (517)
T PF12569_consen   81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDA  112 (517)
T ss_pred             HHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence            883333     567778888877777765443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.53  E-value=9.6e-05  Score=46.01  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.5

Q ss_pred             HHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 023491           29 FYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAE   65 (281)
Q Consensus        29 ~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~   65 (281)
                      +|+++|.+   +|.++.+|+++|.+|+..|++++|++
T Consensus         1 ~y~kAie~---~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL---NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH---CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            48899999   99999999999999999999999963

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.00086  Score=61.87  Aligned_cols=118  Identities=14%  Similarity=0.071  Sum_probs=94.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE---------   72 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~---------   72 (281)
                      ++|.+...+--+|.|||...+|..|..+|.+.-.+   .|......+..|..+++.+.|..|+........         
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l  115 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL  115 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence            46777788889999999999999999999999888   888888888899999999998888876543321         


Q ss_pred             -------hc--------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           73 -------LD--------------Y--NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        73 -------i~--------------p--~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                             ..              |  +.+....+.|.++++.|+|+.|++-|+.|++...-++-+..+++.+.
T Consensus       116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH  188 (459)
T KOG4340|consen  116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH  188 (459)
T ss_pred             HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence                   11              3  45567888899999999999999999999998776666555555443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00019  Score=64.10  Aligned_cols=75  Identities=12%  Similarity=0.136  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           49 NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        49 nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      --|.+++.-..|..|+.+|.++|.++|..+..|-+++.||+++++|+.+..+.++|++++|+.......++...-
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            367888899999999999999999999999999999999999999999999999999999987766665554433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.44  E-value=0.002  Score=64.04  Aligned_cols=97  Identities=21%  Similarity=0.120  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++-+|..+-..|+|.+|+.+..+||..   .|..+.+|+..|.+|-+.|++.+|...+..|-.++..+--.--..+..
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            45677899999999999999999999998   899999999999999999999999999999999998776666666788


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 023491           88 LVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +.+.|++++|...+....+-
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCC
Confidence            88899999998887655443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.0015  Score=59.14  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      ++..+++++=+|.++|.+|+|..|...|..+++-.+..|.-+.+++.+|.|...+|+.++|-..|..+++-.|....+-.
T Consensus       174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            46678889999999999999999999999999997877888999999999999999999999999999999998877644


Q ss_pred             H
Q 023491           83 L   83 (281)
Q Consensus        83 ~   83 (281)
                      .
T Consensus       254 A  254 (262)
T COG1729         254 A  254 (262)
T ss_pred             H
Confidence            3

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.0004  Score=67.47  Aligned_cols=120  Identities=8%  Similarity=-0.035  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhhhc---Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hc---
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEA-LSVAKI---KQ--QKIALHSNRAACYLKLHDFKKAAEECTSVLE-LD---   74 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~a-L~~~~~---~p--~~~~a~~nra~~~~klg~y~~Ai~~~~~al~-i~---   74 (281)
                      .++..++-+++.+|.+|+|..|.+++... |...+.   .|  ....+++|+|.++|++|.|.-++.+|.+|++ ..   
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            35667888999999999999999986543 211111   12  2466779999999999999999999999996 11   


Q ss_pred             --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           75 --------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        75 --------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                                    ......+|+.|..|...|+--.|.++|.++++..-.|+-+|-.++.+--.
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                          23446899999999999999999999999999988899888887776533

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.34  E-value=0.00047  Score=42.00  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      .+|+.+|.+|.++|++++|+..|.++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            568889999999999999999999999988853

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.32  E-value=0.0023  Score=62.94  Aligned_cols=105  Identities=21%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGAL   81 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~   81 (281)
                      |..+-.++..|..+...|+.+.|+..|++++... ........+++.+|.|++-+++|.+|..+|..+++.+.= .+-..
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~  343 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA  343 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence            7788888999999999999999999999988531 123455677899999999999999999999999886542 33345


Q ss_pred             HHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 023491           82 MLRAQTLVTLKEY-------NSALFDVNRLIELN  108 (281)
Q Consensus        82 ~~lg~a~~~~g~~-------~eAl~~~ekAL~ld  108 (281)
                      |..|.|+..+|+.       ++|...|.++-.+-
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            6668899999999       77777777766553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.0037  Score=56.81  Aligned_cols=109  Identities=20%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|..+.....+|....+.||-..|-.+|++.-+...   .-.....+..|.+.+|.-.++|..|...|.+++..++.++.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            456676777778888888888888887775433211   12344566677777888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      +--+.|.|+.-+|+...|++.++.++...|..
T Consensus       288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            88888888888888888888888888888863

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0012  Score=61.47  Aligned_cols=79  Identities=23%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH----TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~----~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      .+.-|-.-|+-||+.++|..|+..|+.+|.....+    +..|.|||.|.+.+|+|..||.++.+++.++|.+..+...-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            35556778999999999999999999999987654    45899999999999999999999999999999976544433


Q ss_pred             HHH
Q 023491          119 ARL  121 (281)
Q Consensus       119 ~~l  121 (281)
                      +.+
T Consensus       160 Akc  162 (390)
T KOG0551|consen  160 AKC  162 (390)
T ss_pred             hHH
Confidence            333

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.19  E-value=0.0014  Score=66.76  Aligned_cols=122  Identities=27%  Similarity=0.392  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLK--LHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~k--lg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      ..+...|+.+|..++|..|.-.|..++.+.+ .+...+.++.+++.||++  +|+|..++..|..++...|...++++.+
T Consensus        54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            3456789999999999999888999988866 345667888999999986  5699999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      +.+|...+.++-|++++.-....+|.+..+..-..+++..+....
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d  178 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKD  178 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence            999999999999999999899999999777776667777665443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.19  E-value=0.0012  Score=61.04  Aligned_cols=78  Identities=18%  Similarity=0.031  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      .+.+-.+.|.-.++.|+.++|...|..|+.++|.++.++..+|.....-++.-+|-++|-+||.++|.|..+..+.++
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            355556677777889999999999999999999999999999999998899999999999999999999888777554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.15  E-value=0.0066  Score=55.61  Aligned_cols=101  Identities=18%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      +|+...+...+.+....|...|.+|+..   ......+|...|..-++ .++...|...|+.+++..+.+...|......
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD---KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            5666777777777788999999999865   56677888888888777 5666669999999999999999988888889


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      +..+++...|...|++++..-|...
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999988776655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.14  E-value=0.0026  Score=60.94  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cC---c--cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAK-----IK---Q--QK-----IALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~---p--~~-----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      -...|..+|+++.|..|+.-|..+|.++.     ..   +  .+     ...-..+..||+++++-+.|+....+.|-++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            34567889999999999999999999974     11   1  11     2234678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      |.++.-+++.|.|+..+.+|-+|...+..|.-
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887766554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.13  E-value=0.0023  Score=63.51  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=92.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 023491           18 YRDGRYEEALGFYTEALSVAKIKQQ-KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNS   96 (281)
Q Consensus        18 ~~~gdy~eAl~~y~~aL~~~~~~p~-~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~e   96 (281)
                      -..|....|+.++..|+..   .|. ......++|.++.+.|-...|-..+.+++.++...+-.+|.+|+++..+++...
T Consensus       618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            3468999999999999987   554 345578899999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           97 ALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |++.|+.|+.++|++.....-+..|.-+
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~c~  722 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIRCM  722 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            9999999999999999999888877663

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.09  E-value=0.0026  Score=43.77  Aligned_cols=43  Identities=23%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      ++|.+|..++++|+|.+|...+..+|++.|++..+.-....+-
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            5678999999999999999999999999999999876665543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.09  E-value=0.024  Score=53.91  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY-NHTGALMLRAQ   86 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p-~~~~a~~~lg~   86 (281)
                      ......|..-+-.|+|.+|..+..++-..   .+....+|..-+.+.-++|+++.|=.++.++-+..+ +...++..++.
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~---~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar  161 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEH---GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR  161 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhc---CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            34456777778889999999999998775   666677777777888899999999999999888844 46678888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++...|++..|...+..+++..|.++.+..+...+.-.+
T Consensus       162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~  200 (400)
T COG3071         162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL  200 (400)
T ss_pred             HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence            999999999999999999999999988887766655543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.0064  Score=55.30  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIK-QQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------YNHTGALM   82 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------p~~~~a~~   82 (281)
                      .+...+++.-.|.|.-.+..|...+..   + +..+.+...+|.+.|+.|+.+.|..+|+.+-+.+      ....-++.
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            345677888899999999999999997   6 7889999999999999999999999999654332      23445788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.+.+|...++|.+|...|.+++..||.++.+-++++.|.--++
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg  300 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG  300 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence            88999999999999999999999999999998888887776554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.07  E-value=0.0011  Score=39.74  Aligned_cols=31  Identities=32%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ++|++|.++..+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666655554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.96  E-value=0.0018  Score=40.56  Aligned_cols=28  Identities=18%  Similarity=0.152  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +|.++|.+|..+|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5788899999999999999999986654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.94  E-value=0.008  Score=61.60  Aligned_cols=94  Identities=11%  Similarity=0.036  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .+......+.+.|++++|..+|.+.- .   .| +...|..+..++...|+++.|...+++++.+.|.+...|..++++|
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~~-~---~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y  538 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRAP-F---KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY  538 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHCC-C---CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence            34455666777778888877766531 1   33 4556777888888888888888888888888888888888889999


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 023491           89 VTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+.|++++|.+.++...+.
T Consensus       539 ~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        539 NSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHc
Confidence            9999999999888877654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.93  E-value=0.01  Score=62.09  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------C
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKI--K-QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--------H   77 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~--~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--------~   77 (281)
                      .+...|..++..|++..|...|.+++.....  . .....++.++|.+++..|++..|...+.+++.+...        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            4456788888899999999999999876441  1 122456788899999999999999999998876322        1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                      ...+..+|.+++..|++++|...+.+++.+.
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            2345677888999999999999999988764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.92  E-value=0.0019  Score=38.74  Aligned_cols=32  Identities=25%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +++++|.|++++|++++|+..|+.++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57888999999999999999999998888864

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.92  E-value=0.016  Score=60.81  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIK-----QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----H   77 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-----p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----~   77 (281)
                      ..+...|..++..|++..|..++.+++......     +....++..+|.+++..|+++.|...+..++.+...     .
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  611 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ  611 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence            345677889999999999999999999875421     223445678899999999999999999999876432     3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      ..++..+|.++...|++..|...+.+++.+..
T Consensus       612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        612 LQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            45677789999999999999999999987643

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.88  E-value=0.008  Score=47.56  Aligned_cols=95  Identities=20%  Similarity=0.260  Sum_probs=76.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhcCCCHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-----------FKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-----------y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|..+|.+|++-+|+++.++.+..-..+...+.++...|.+++++..           +-.|+++|+++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999998722222223667778888776543           5678999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      |.+|.-+-....|++++.-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99998887778888888888888765

>smart00028 TPR Tetratricopeptide repeats

Probab=96.87  E-value=0.0016  Score=37.09  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      +++++|.++..+|+++.|+..|++++.++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            445555555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.037  Score=50.95  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS------------------   69 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~------------------   69 (281)
                      +..+..|..+...|++.+|...|..+++.   .+....+...++.||...|+++.|...+..                  
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~  211 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE  211 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            34566788999999999999999999999   888899999999999999999776655543                  


Q ss_pred             ----------------HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh
Q 023491           70 ----------------VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS--SEVYQNLQARLKTQL  125 (281)
Q Consensus        70 ----------------al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~--~~~a~~~l~~l~~~l  125 (281)
                                      .+..+|++..+-+.+|..+...|+++.|+..+-..|+.+-+  +..++..+-.+-..+
T Consensus       212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~  285 (304)
T COG3118         212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF  285 (304)
T ss_pred             HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence                            11225889999999999999999999999999888888654  334444444444433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.77  E-value=0.026  Score=49.88  Aligned_cols=90  Identities=27%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             cCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhcCC------CHHHHH
Q 023491           20 DGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHD-------FKKAAEECTSVLELDYN------HTGALM   82 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~-------y~~Ai~~~~~al~i~p~------~~~a~~   82 (281)
                      ...+.+|+..|.-||-...    .....+.+++.+|.+|..+|+       +..|+..|.+++.....      ....+|
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4578999999999887654    122447788999999999998       55677777777665432      246899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      .+|.+++++|++++|+.+|.+++..--
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            999999999999999999999997643

>smart00028 TPR Tetratricopeptide repeats

Probab=96.75  E-value=0.0024  Score=36.38  Aligned_cols=32  Identities=41%  Similarity=0.471  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYN   76 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~   76 (281)
                      .+++++|.+++.++++..|+..|..++.+.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46788899999999999999999999888775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.74  E-value=0.056  Score=58.26  Aligned_cols=89  Identities=12%  Similarity=0.057  Sum_probs=38.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCC
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQTLVTLKE   93 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a~~~~g~   93 (281)
                      ..+.+.|++++|..+|...+..  .-..+...|..+..+|.+.|++++|+..|....... ..+...|-.+...|++.|+
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~--G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~  734 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQ--GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ  734 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence            3344444444444444444332  112234444444555555555555555554443321 1233444444445555555


Q ss_pred             HHHHHHHHHHHH
Q 023491           94 YNSALFDVNRLI  105 (281)
Q Consensus        94 ~~eAl~~~ekAL  105 (281)
                      +++|+..|.+..
T Consensus       735 ~eeAlelf~eM~  746 (1060)
T PLN03218        735 LPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHHH
Confidence            555555554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=0.017  Score=51.70  Aligned_cols=106  Identities=17%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------
Q 023491           10 KIERAHQLYRD-GRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-------   78 (281)
Q Consensus        10 l~~~G~~~~~~-gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-------   78 (281)
                      ++..|..|-.. .++..||.+|+++-.....+.   ..-.+++..|..--.+++|.+|+..|+++.+..-++.       
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            33444444333 678889999998887654332   2344566666666789999999999999876654443       


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      ..++.-|.|++...+.-.|...+++..+++|.....+
T Consensus       196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            2456668899998999999999999999999865443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.051  Score=49.45  Aligned_cols=120  Identities=15%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------------------hcCcccHHHHHHHHHHHHH----cCCH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVA------------------------KIKQQKIALHSNRAACYLK----LHDF   60 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~------------------------~~~p~~~~a~~nra~~~~k----lg~y   60 (281)
                      .+..-|..+.+.|+|++|+........+-                        ..+-.+-..+..+|.+|.+    .+.+
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence            34455677777888888887766532210                        0122223334445555554    2357


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           61 KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        61 ~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ..|.-.|+..-...+..+..+...+.|++.+|+|++|...++.+|.-++++++...++-.+...++..
T Consensus       190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            77777777766656778888899999999999999999999999999999999999888777666544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.70  E-value=0.017  Score=54.96  Aligned_cols=115  Identities=20%  Similarity=0.101  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ++......+..+...|++++|.....+++..    .-+..++...+  ..+.+++..=++..++.++..|+++..++.||
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG  335 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG  335 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence            4566677788889999999999999999885    22333222222  23577778888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ..+++.+.|.+|-.+|+.|+.+.|... -..+++.+...++.
T Consensus       336 ~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~  376 (400)
T COG3071         336 RLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGE  376 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence            888888888888888888888776543 34555555555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.69  E-value=0.061  Score=58.03  Aligned_cols=61  Identities=8%  Similarity=0.045  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      .|..+..+|.+.|++++|+..|..+.+.+ +.+...|-.+..+|++.|++++|+..|.....
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444444433 22333444444444444444444444444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.69  E-value=0.0013  Score=63.68  Aligned_cols=83  Identities=20%  Similarity=0.154  Sum_probs=75.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+-+++.++++.++|..|+.-..+||+.   +|....+|+.+|.+++.++.|.+|+.+|..+..+.|+.+.+..
T Consensus        34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r  110 (476)
T KOG0376|consen   34 DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATR  110 (476)
T ss_pred             CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence            4667777778899999999999999999999999   9999999999999999999999999999999999999998877


Q ss_pred             HHHHHH
Q 023491           83 LRAQTL   88 (281)
Q Consensus        83 ~lg~a~   88 (281)
                      .+.-|-
T Consensus       111 ~~~Ec~  116 (476)
T KOG0376|consen  111 KIDECN  116 (476)
T ss_pred             HHHHHH
Confidence            775553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.65  E-value=0.021  Score=59.07  Aligned_cols=89  Identities=15%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491           19 RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL   98 (281)
Q Consensus        19 ~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl   98 (281)
                      ..++|..|+....+.++.   .|+...+..--|..++++|.+++|..+++..-...+++-..+--+-+||..++++++|+
T Consensus        21 d~~qfkkal~~~~kllkk---~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK---HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            344555555555555555   55555555555555555555555554444433333444445555555555555555555


Q ss_pred             HHHHHHHHhCCC
Q 023491           99 FDVNRLIELNPS  110 (281)
Q Consensus        99 ~~~ekAL~ldP~  110 (281)
                      ..|++++..+|+
T Consensus        98 ~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   98 HLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHhhCCc
Confidence            555555555555

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.017  Score=58.02  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +-+.|..+|+..+|..+++.|...+...+.+.   ..+....+++.||+.+.+++.|++.+..|=+.+|.++-+-+..-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            44678899999999999999999998866332   236778899999999999999999999999999999999899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 023491           87 TLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +....+.-.+|+.+..+....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            999999999999998877664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.017  Score=56.33  Aligned_cols=106  Identities=15%  Similarity=0.049  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      -++...|+..|.--..++++..|...|.+||..   +..+..+|+..+-+-|+.+...-|...+.+|+.+-|.--..||.
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdv---d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK  146 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDV---DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK  146 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence            356778888888888999999999999999998   88999999999999999999999999999999999998899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      .-.+-..+|+...|.+.|++=+...|+..
T Consensus       147 Y~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  147 YIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            99999999999999999999999988743

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.55  E-value=0.0057  Score=38.17  Aligned_cols=28  Identities=29%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      ++.++|.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3566777777777777777777775443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.55  E-value=0.025  Score=55.64  Aligned_cols=99  Identities=15%  Similarity=0.026  Sum_probs=81.5

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHH
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH----TGALMLRAQTLVTLKEYN   95 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~----~~a~~~lg~a~~~~g~~~   95 (281)
                      ......|..++......   .|+....++..|.++...|+.++|+..|.+++......    .-++|.+|.++..+++|+
T Consensus       246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            45667788888888887   89999999999999999999999999999988543322    348999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           96 SALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        96 eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +|..+|.++++.+.-.......+..+
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHH
Confidence            99999999999876555544444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.51  E-value=0.056  Score=56.04  Aligned_cols=110  Identities=19%  Similarity=0.126  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|+..-+..-.|-.+++.|.+++|..+++..-..   .+.+-..+-.+-.||..++++++|...|++++..+|. -+-++
T Consensus        39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~  114 (932)
T KOG2053|consen   39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL---KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY  114 (932)
T ss_pred             CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC---CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence            5778888888999999999999999777766554   5567777778999999999999999999999999998 88888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      .+-.+|.+.+.|..=.+.--+.-+..|.++-...
T Consensus       115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW  148 (932)
T KOG2053|consen  115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW  148 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence            9999999999987766666666667788774433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.51  E-value=0.027  Score=45.77  Aligned_cols=62  Identities=18%  Similarity=0.074  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE   72 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~   72 (281)
                      ..+...+..+...|++..|+..+.+++..   +|.+-.++..+-.+|..+|++..|+..|.+..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALAL---DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            45567778889999999999999999999   999999999999999999999999999988743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03077 Protein ECB2; Provisional

Probab=96.49  E-value=0.11  Score=54.62  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..+......+.+.|++++|..++.+. ..   .|. ...|..+-.++...|+.+.|....+++++++|++...|..++++
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~---~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~  700 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PI---TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL  700 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence            34444555555556666665555542 11   222 33344444444555666666666666667777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~  106 (281)
                      |...|+|++|.+..+...+
T Consensus       701 ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        701 YADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHCCChHHHHHHHHHHHH
Confidence            7777777777666655443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.41  E-value=0.036  Score=56.87  Aligned_cols=99  Identities=13%  Similarity=-0.016  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----------   74 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----------   74 (281)
                      +...|......|.+.|++++|+.+|.+....  .-..+...|..+..++.++|.++.|...+..+++..           
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence            4455666667777777777777777665442  011123334444444444444444444444443332           


Q ss_pred             ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           75 ---------------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        75 ---------------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                                           ..+...|..+...|.+.|+.++|+..|++.+.
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                                 12444566666666666777777777766655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.40  E-value=0.012  Score=55.68  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-------   77 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-------   77 (281)
                      +.+...|+++.-.+.|+++++.|+.|+.++.  .++ ....++..+|..+-++++|++|+-+..+|..+-...       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            4556688899999999999999999999865  222 346778889999999999999999988887764221       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           78 ---TGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        78 ---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                         .-++|.++.+|..+|.+..|.++.+.+.++
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence               236777788888888888888777777665

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.39  E-value=0.016  Score=54.86  Aligned_cols=101  Identities=15%  Similarity=0.093  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKI-------KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------   74 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~-------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------   74 (281)
                      +++..+|..+-..+||++|+-+..+|+.+...       .-....+.|.++.++..+|.+-.|.++|+.+.++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            45667888889999999999999999888651       11346677889999999999999999999997764      


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                      +-++.++.-+|.+|...|+.+.|..-|+.|....
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            3456788999999999999999999999998764

>PRK10941 hypothetical protein; Provisional

Probab=96.36  E-value=0.052  Score=49.66  Aligned_cols=76  Identities=18%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      +.+.-..+.+.++|..|+.+.+..+.+   .|.++.-+.-||.+|.++|.+..|+.+++.-++..|+.+.+...+.++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            345667889999999999999999999   9999999999999999999999999999999999999998876665544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.029  Score=51.10  Aligned_cols=81  Identities=21%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .....|+=.++++.+++..|..+..+.+.++|.++.-+--+|.+|.++|.+.-|+.++...++.-|+.+.+......+.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44556677889999999999999999999999999999999999999999999999999999999999887776665544


Q ss_pred             H
Q 023491          124 Q  124 (281)
Q Consensus       124 ~  124 (281)
                      .
T Consensus       261 l  261 (269)
T COG2912         261 L  261 (269)
T ss_pred             H
Confidence            3

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.062  Score=48.20  Aligned_cols=108  Identities=20%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcC------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDY------   75 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p------   75 (281)
                      ++..-+..+.-+|+..+..+|+.++..+|.+...   -..-+..+..+|-+|-. +.++++||.+|+.+-....      
T Consensus        72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s  151 (288)
T KOG1586|consen   72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS  151 (288)
T ss_pred             hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            4445555566667777999999999999988541   11223334556666643 5889999999999865532      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           76 NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      .--+|+...|..-..+++|..|+..|+++....-+|.-
T Consensus       152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            22368888898889999999999999998877655543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.26  E-value=0.41  Score=40.42  Aligned_cols=113  Identities=15%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ...+++........++...+..++...--+   .|....+-..-|..+...|+|.+|+..++.+..-.|.++-+--.++.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            456788889999999999999988887777   89999999999999999999999999999999989999988889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |++.+|+..-=... ..+++.. .++.+..+...+...
T Consensus        87 CL~~~~D~~Wr~~A-~evle~~-~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   87 CLYALGDPSWRRYA-DEVLESG-ADPDARALVRALLAR  122 (160)
T ss_pred             HHHHcCChHHHHHH-HHHHhcC-CChHHHHHHHHHHHh
Confidence            99999986543332 2344444 466666666555444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.25  E-value=0.00095  Score=62.31  Aligned_cols=75  Identities=28%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .-.+..|.++.||..|..+|.++|.....|-.+|.+++.+++...|+.+|..|++++|+...-..+.+...+.+.
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            344568889999999999999999999999999999999999999999999999999997766666665555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.21  E-value=0.13  Score=46.97  Aligned_cols=114  Identities=12%  Similarity=0.021  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HH
Q 023491            5 AAPANKIERAHQLYR-DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GA   80 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a   80 (281)
                      .+-..+...|..-+. .++...|...|+.++..   -+.+..++......+.++++...|...|++++..-+...   ..
T Consensus        33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i  109 (280)
T PF05843_consen   33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI  109 (280)
T ss_dssp             S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence            345677777877666 67878899999999998   777788888888888999999999999999998766544   46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      |-.....-...|++......+.++.++-|....+.....+.
T Consensus       110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen  110 WKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            66667788889999999999999999999977666554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.21  E-value=0.055  Score=46.32  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CH----HHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HT----GAL   81 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~----~a~   81 (281)
                      ..+..+|.-|++.|++..|++.|.++...+.........++++..+.+..+++..+...+.++-.+-..  ++    +.-
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            467789999999999999999999998876655566888899999999999999999999888554322  22    234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      ...|..+...++|..|...|-.++.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            4457777888999999988866553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03077 Protein ECB2; Provisional

Probab=96.15  E-value=0.11  Score=54.64  Aligned_cols=111  Identities=10%  Similarity=0.022  Sum_probs=81.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGALML   83 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a~~~   83 (281)
                      +...|......+.+.|+.++|+.+|.+.+.. ...| +...|..+-.++.+.|.+++|...|.......  ..+...|..
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            5556777888889999999999999987764 1133 34445556677888999999999999887433  235678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      +..+|.+.|++++|...+++. .+.|+......++.
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~  665 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLN  665 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence            999999999999999888764 35555443333333

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.12  E-value=0.12  Score=45.11  Aligned_cols=98  Identities=10%  Similarity=-0.018  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .++..+..+++..|..+++..|...+++.....+ .-..+...+-.|.+|.-+|.+..|...|+.++...| .+.+-.+.
T Consensus       122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y  199 (251)
T COG4700         122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYY  199 (251)
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHH
Confidence            3678889999999999999999999999998732 223455566678888899999999999999999987 45556667


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekA  104 (281)
                      +..+.++|+..+|...|...
T Consensus       200 ~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         200 AEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHhcchhHHHHHHHHH
Confidence            88899999888886665443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.11  E-value=0.0081  Score=53.57  Aligned_cols=61  Identities=20%  Similarity=0.185  Sum_probs=43.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                      ..+.++...|.+.|.+++.+.|.+...||++|....+.|++..|.+.|++.|+++|.+...
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            3456677777777777777777777777777777777777777777777777777765543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.07  E-value=0.04  Score=49.71  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcC
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLE----LDY   75 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~----i~p   75 (281)
                      +|..+..-..++...+...+.+.|+.+|++++.+...+.   .-..++-..+..+.++..|.+|...+.+-..    .+.
T Consensus       106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            577788888888888999999999999999988876333   3355566677788888899888877766432    222


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           76 --NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        76 --~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                        .-.+++...-.+|....+|..|..+|+.+.++.
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence              222344444445555669999999998877763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.06  E-value=0.078  Score=52.06  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ--KIALHSNRAACYLKLHDFKKAAEECTSVLEL-DYNHTGALMLRA   85 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~--~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~~~a~~~lg   85 (281)
                      +.+..|+|+.+.|+.++|++.|.+.++.   .|.  ...+++|+..|++.++.|.++...+.+-=.+ -|+.+...|..|
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke---~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA  337 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKE---FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA  337 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhh---CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            4457899999999999999999999987   443  5678999999999999999998777664222 244566666665


Q ss_pred             HHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 023491           86 QTLVT-LKE---------------YNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        86 ~a~~~-~g~---------------~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      ...++ .++               -..|++.+.+|++.+|..+.+.-
T Consensus       338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            54433 111               24578899999999998886643

The molecular function of this protein is uncertain.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.97  E-value=0.11  Score=51.08  Aligned_cols=91  Identities=15%  Similarity=0.072  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 023491           25 EALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE-YNSALFDVNR  103 (281)
Q Consensus        25 eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~-~~eAl~~~ek  103 (281)
                      .-+.+|..|+..   -+.+..+|++......+.+.+.+....|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.+
T Consensus        89 rIv~lyr~at~r---f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   89 RIVFLYRRATNR---FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            345668888887   566888888888777778889999999999999999999999999999888877 9999999999


Q ss_pred             HHHhCCCCHHHHHHH
Q 023491          104 LIELNPSSEVYQNLQ  118 (281)
Q Consensus       104 AL~ldP~~~~a~~~l  118 (281)
                      +|+.+|+++.++...
T Consensus       166 gLR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  166 GLRFNPDSPKLWKEY  180 (568)
T ss_pred             HhhcCCCChHHHHHH
Confidence            999999998876543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.97  E-value=0.27  Score=45.23  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cC--------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-DY--------   75 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p--------   75 (281)
                      .+..+...+..+.+.|.+..|...+.++..... .....+.+.+..+..+...|+..+|+..+...+.. ..        
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            456788899999999999999999999887621 11226778888899999999999999999888771 11        


Q ss_pred             -------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           76 -------------------------NHTGALMLRAQTLVTL------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        76 -------------------------~~~~a~~~lg~a~~~~------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                                               ..+++++.+|......      +.+..++..|..++.++|.+..++...+.....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                                     1125788888888888      889999999999999999998888887777666


Q ss_pred             hhc
Q 023491          125 LSL  127 (281)
Q Consensus       125 l~~  127 (281)
                      +-.
T Consensus       305 ~~~  307 (352)
T PF02259_consen  305 LLE  307 (352)
T ss_pred             HHH
Confidence            543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.96  E-value=0.021  Score=56.99  Aligned_cols=99  Identities=17%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 023491           13 RAHQLY-RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTL   91 (281)
Q Consensus        13 ~G~~~~-~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~   91 (281)
                      .+..|. .+|...+|+.+|..++.+++.. ..-.+++.+|.+++++|...+|--.+..|+.-.+....-+|-+|+++.++
T Consensus       218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml  296 (886)
T KOG4507|consen  218 MASFYWRIKGEPYQAVECAMRALHFSSRH-NKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML  296 (886)
T ss_pred             HHHHHHHHcCChhhhhHHHHHHhhhCCcc-cccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence            344443 4699999999999999985532 33456778999999999999999999999998888888899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 023491           92 KEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        92 g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      |.|...+.+|..+++.+|...
T Consensus       297 ~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  297 GEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             hhhhhhhhhhhhhhccCcchh
Confidence            999999999999999999754

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.24  Score=45.26  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            9 NKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         9 ~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .+.++|..+.+    .+.+..|.-.|+..-..   -+.++.+.+..|.|++.+|+|++|...+..+|..+++.+.++.|+
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            34445555544    24688888888887775   677888999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHH-HHHHHhCCCCHHHHH
Q 023491           85 AQTLVTLKEYNSALFDV-NRLIELNPSSEVYQN  116 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~-ekAL~ldP~~~~a~~  116 (281)
                      -.+-...|.-.++...+ .+....+|..+-+..
T Consensus       248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~  280 (299)
T KOG3081|consen  248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH  280 (299)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence            99988999887765544 555556777665443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.76  E-value=0.06  Score=40.97  Aligned_cols=46  Identities=17%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           65 EECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        65 ~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ..++..+..+|++..+.|.+|.++...|+++.|+..+-.+++.+++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3444445555555555555555555555555555555555554443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.74  E-value=0.2  Score=46.14  Aligned_cols=105  Identities=21%  Similarity=0.103  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhh------------------------------cCcccHHHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALS-VAK------------------------------IKQQKIALHSNRAACY   54 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~-~~~------------------------------~~p~~~~a~~nra~~~   54 (281)
                      .+...++.+..+...|+..+|+..+...+. ...                              .....+.+++.+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            577888999999999999999999988887 211                              0123356667777666


Q ss_pred             HHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC
Q 023491           55 LKL------HDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE-----------------YNSALFDVNRLIELNPS  110 (281)
Q Consensus        55 ~kl------g~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~-----------------~~eAl~~~ekAL~ldP~  110 (281)
                      ..+      +.++.++..|..++.++|...++|+.+|..+..+=.                 ...|+..|-+|+.+.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            667      888999999999999999999999999998766522                 24589999999999887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.68  E-value=0.017  Score=56.47  Aligned_cols=82  Identities=12%  Similarity=0.081  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-hhh--------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALS-VAK--------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~-~~~--------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      +.++|..+|+.|.|..++-+|.+||+ .+.              .......+.||.|..|+..|+.-.|.++|.++....
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            35789999999999999999999996 221              222456788999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 023491           75 YNHTGALMLRAQTLVTL   91 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~   91 (281)
                      ..+++.|+++|.|.+..
T Consensus       366 h~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  366 HRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcCcHHHHHHHHHHHHH
Confidence            99999999999987654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.58  E-value=0.23  Score=48.82  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALMLRAQTLVTLKEYNSALFDVNRLIEL-NPSSEVYQNLQAR  120 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-dP~~~~a~~~l~~  120 (281)
                      ..+...+|.|..++|+.++|++.+..+++..|.  +..++++|-.++..++.|.++...+.+.=.+ -|..+.+-...+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            445678999999999999999999999988774  6679999999999999999999998886443 2455554444444


Q ss_pred             H
Q 023491          121 L  121 (281)
Q Consensus       121 l  121 (281)
                      +
T Consensus       339 L  339 (539)
T PF04184_consen  339 L  339 (539)
T ss_pred             H
Confidence            4

The molecular function of this protein is uncertain.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.54  E-value=0.035  Score=34.72  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      .++.++|.+|+.+|+|.+|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            44566666666666666666666666554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.50  E-value=0.093  Score=39.04  Aligned_cols=61  Identities=13%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      ...++.|..+|...+..+|+..++.+|......+..+.++-.+..+|+..|+|.+++.+.-
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555533333334444444445555555555444443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.45  E-value=0.19  Score=49.28  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             HcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491           19 RDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA   97 (281)
Q Consensus        19 ~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA   97 (281)
                      ...+.+.+...|..+|.++| ..-..+.+|+..|....++.+...|...+..||-..|.+ +.+-..-.+-.++++++..
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC  456 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence            34566666666666666654 122334555555555556666666666666666655532 2222222333455566666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           98 LFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ...|++.|+..|.+..++...+.+...|+
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lg  485 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLG  485 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence            66666666666666666665555555544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.44  E-value=0.05  Score=50.66  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ...|....+.|..+.|..+|.-|+.+   .|.++.++..+|...-..++.-+|-.+|.+|+.+.|.+.+++.+++..
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34566778899999999999999999   999999999999998888999999999999999999999999998754

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.061  Score=48.63  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      .-.+.+.+.|++..|+|-+++++-...|..   +|.+..+||.||.++...-+..+|..+|.++|+++|.-..+
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            345678899999999999999999999998   99999999999999999999999999999999999965443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.34  E-value=0.31  Score=41.18  Aligned_cols=82  Identities=16%  Similarity=0.039  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ..+..+..+-++.++.+.+...+..+--+.|..+..-+.-|.+++..|+|.+|+..|+.+..-.|..+-...+++.+...
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34555677777889999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hh
Q 023491          125 LS  126 (281)
Q Consensus       125 l~  126 (281)
                      ++
T Consensus        91 ~~   92 (160)
T PF09613_consen   91 LG   92 (160)
T ss_pred             cC
Confidence            54

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.31  E-value=0.047  Score=34.08  Aligned_cols=30  Identities=23%  Similarity=0.207  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ..++.++|.+|..+|++.+|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457899999999999999999999999876

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.29  E-value=0.14  Score=38.93  Aligned_cols=28  Identities=29%  Similarity=0.319  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +++++|.++...|++++|+..+++|+.+
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4455555555555555555555555554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.28  E-value=0.22  Score=37.90  Aligned_cols=48  Identities=15%  Similarity=0.221  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491           27 LGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus        27 l~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +..+.+.+..   +|.+..+.+.+|.+++..|+++.|+..+-.+++.++.+
T Consensus         8 ~~al~~~~a~---~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAA---NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4567778887   99999999999999999999999999999999998876

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.24  E-value=0.17  Score=41.66  Aligned_cols=83  Identities=17%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            6 APANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +.+..++.+-++.+..   +-.+-+.+++..+.. . +| ..-.+.|.+|..++++++|+.++.++...|+..|+|.++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4566777787777765   456788889988862 1 33 3456677799999999999999999999999999999886


Q ss_pred             HHHHHHHHH
Q 023491           82 MLRAQTLVT   90 (281)
Q Consensus        82 ~~lg~a~~~   90 (281)
                      -+.-.+.-+
T Consensus       109 ~Lk~~ied~  117 (149)
T KOG3364|consen  109 ELKETIEDK  117 (149)
T ss_pred             HHHHHHHHH
Confidence            665544433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.20  E-value=0.12  Score=39.35  Aligned_cols=60  Identities=20%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQ------QKIALHSNRAACYLKLHDFKKAAEECTSVLE   72 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p------~~~~a~~nra~~~~klg~y~~Ai~~~~~al~   72 (281)
                      .-...++.|+|..|++.+.+.........      ....+.+++|.++...|++++|+..++.+++
T Consensus         4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~   69 (94)
T PF12862_consen    4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR   69 (94)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34467889999999999999998865222      2356788999999999999999999999965

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.31  Score=46.00  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=74.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-DYNH---TGALMLRAQTL   88 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~---~~a~~~lg~a~   88 (281)
                      .+...+-+|.+.+|...+.+.|.-   .|.+..++..--.+++-+|+.......++++|-. +++-   .-..-.++..+
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            455567778888888888888876   6766666666666777777777777777777655 4333   22333445666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ...|-|.+|.+.-.+++++++.+.=+...++.+...
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem  221 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM  221 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence            777777777777777777777766665555555544

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.92  E-value=0.21  Score=53.07  Aligned_cols=112  Identities=16%  Similarity=0.152  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL----H---DFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl----g---~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ...+++..+.|++|+..|.+....+|....--.+.+..|.+++..    |   .|.+|+..|+++ ...+.-+--|+..|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            456788899999999999999888775556677888888877652    2   477788777765 22334455677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      .+|.++|+|.+-+++|.-|++.-|..+.+-.+...+-..+
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL  599 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence            8999999999999999999999999888777766655443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.54  Score=47.10  Aligned_cols=110  Identities=16%  Similarity=-0.016  Sum_probs=84.7

Q ss_pred             CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCCHHH
Q 023491            4 PAAPANKIER--AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS-VLELDYNHTGA   80 (281)
Q Consensus         4 P~~a~~l~~~--G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~-al~i~p~~~~a   80 (281)
                      +.+...+...  .......++...|+-.+..++..   ++..+.++.++|.++...|....++..+.. +....|.+...
T Consensus        62 ~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~  138 (620)
T COG3914          62 DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV---NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF  138 (620)
T ss_pred             CCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc---CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence            3444443333  34444556777778888888888   999999999999999888877777766665 78888888876


Q ss_pred             HHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           81 LMLR------AQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        81 ~~~l------g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      ...+      |..+..+|+..++...+++++.+.|.++.+..
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~  180 (620)
T COG3914         139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG  180 (620)
T ss_pred             HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence            5555      99999999999999999999999998854433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.2  Score=47.30  Aligned_cols=95  Identities=8%  Similarity=-0.071  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSV-AKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~-~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      +++-.-..+|-+|....-...+.+.|-. .+.-|...-+.-.++.++...|-|++|.+...+++++++.+.-+...++.+
T Consensus       139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV  218 (491)
T KOG2610|consen  139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV  218 (491)
T ss_pred             hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence            3333445566667666666666666554 112233344445566677777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNR  103 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ek  103 (281)
                      +...|++.++++.+.+
T Consensus       219 lem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  219 LEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHhcchhhhHHHHHHh
Confidence            7777776666666543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.85  E-value=1.2  Score=40.28  Aligned_cols=110  Identities=15%  Similarity=0.038  Sum_probs=83.1

Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQK-IALHSNRAACYLKLH-------DFKKAAEECTSV   70 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~-~~a~~nra~~~~klg-------~y~~Ai~~~~~a   70 (281)
                      ....+...+.+|..++.    ..++.+|...|.++...   .... ..+.+++|.+|..-.       +...|+..|.++
T Consensus       105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            34566677888888877    45999999999999987   4333 355788888887642       334788888888


Q ss_pred             HHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           71 LELDYNHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      -...  +..+.+++|.+|..    ..++..|+.+|.++-+...  .....++.
T Consensus       182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            6655  88899999988755    3489999999999999876  55666665

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.64  E-value=0.066  Score=47.90  Aligned_cols=61  Identities=28%  Similarity=0.248  Sum_probs=55.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      ......++...|.++|.+++.+   .|.....|+.+|....+.|+++.|...|+.+++++|...
T Consensus         3 ~~~~~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456789999999999999999   899999999999999999999999999999999998643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.54  E-value=1.7  Score=39.53  Aligned_cols=120  Identities=13%  Similarity=0.166  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhc-----------CcccHHHHHHHHHHHHHcCCHHHHHH---HHHHHH
Q 023491            7 PANKIERAHQLYRDG-RYEEALGFYTEALSVAKI-----------KQQKIALHSNRAACYLKLHDFKKAAE---ECTSVL   71 (281)
Q Consensus         7 a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~-----------~p~~~~a~~nra~~~~klg~y~~Ai~---~~~~al   71 (281)
                      +..+++-|...+..+ +|..|+..+++++.+++.           ......++..++.+|+..+.++...+   ....+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            456789999999999 999999999999998531           12446677889999999888764433   333344


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh
Q 023491           72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQLS  126 (281)
Q Consensus        72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP-~~~~a~~~l~~l~~~l~  126 (281)
                      .-.|+.+..++..=.++.+.++.+.+...+.+++.--+ ........+..++....
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~  170 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE  170 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Confidence            44577788776666666668888888888888888655 33444444444444433

It is also involved in sporulation [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.52  E-value=0.55  Score=51.25  Aligned_cols=104  Identities=13%  Similarity=0.008  Sum_probs=58.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALMLRAQTL   88 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~   88 (281)
                      ..+...|-+.+.+++|.++|+..+..   -.+....|..+|..+++..+-+.|...+.+||.--|.  |.+..-..|+.-
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            34444455555566666666655554   2244555555666666666656666666666655554  555555555666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           89 VTLKEYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                      ++.|+-+.+...|+-.|.-.|.--.+|..
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHH
Confidence            66666666666666666655554444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.41  E-value=1.9  Score=41.34  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 023491            5 AAPANKIERAHQLYR---DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK---------LHDFKKAAEECTSVLE   72 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~---~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k---------lg~y~~Ai~~~~~al~   72 (281)
                      ....+.+..|.++.+   .|+.+.|+..+..++..  .....+..+.-+|.+|-.         ...+++|+..|.++++
T Consensus       177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            356677788989988   89999999999996554  255677778878877743         2248899999999999


Q ss_pred             hcCCCHH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           73 LDYNHTG---------------------------------------------ALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        73 i~p~~~~---------------------------------------------a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ++++.-.                                             .+-.++.+.+-.|+++.|++++++++.+
T Consensus       255 ~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  255 IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            8854220                                             1122233445568899999999999999


Q ss_pred             CCCCHHHHHHHH
Q 023491          108 NPSSEVYQNLQA  119 (281)
Q Consensus       108 dP~~~~a~~~l~  119 (281)
                      .|..=.....+.
T Consensus       335 ~~~~W~l~St~~  346 (374)
T PF13281_consen  335 KPPAWELESTLE  346 (374)
T ss_pred             CCcchhHHHHHH
Confidence            876433333333

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.32  E-value=0.23  Score=47.23  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------------cCcccHHHHHHHHHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------------IKQQKIALHSNRAACYL   55 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------------~~p~~~~a~~nra~~~~   55 (281)
                      .+|-.+..+.+.+..+..+|++..|..+.++||-...                          -+.....+.+.....+.
T Consensus        35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~  114 (360)
T PF04910_consen   35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG  114 (360)
T ss_pred             HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence            3677888888888888888888888888888875532                          11122344455666677


Q ss_pred             HcCCHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           56 KLHDFKKAAEECTSVLELDYN-HT-GALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        56 klg~y~~Ai~~~~~al~i~p~-~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      +.|.+..|+++|+-++.++|. ++ .+++.+-....+.++|+--+..++.....
T Consensus       115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~  168 (360)
T PF04910_consen  115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK  168 (360)
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence            788888888888888888886 54 45666666667778888777777765543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.29  E-value=0.21  Score=44.07  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 023491           18 YRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRAQ   86 (281)
Q Consensus        18 ~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg~   86 (281)
                      ....-+..|+..|.+++.....   .-....+.|.+|.+++++|++++|+.+|.++|.....+. ..+..+|.
T Consensus       136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            3334456777778877765331   223477889999999999999999999999998765443 35555554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.19  E-value=1  Score=49.25  Aligned_cols=114  Identities=18%  Similarity=0.078  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ....|+..|..++++.+-+.|-.++.+||...|. ..+..+...-|..-|+.|+-+.+...|+..+..+|.....|.-..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            4568999999999999999999999999999552 447888899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      ..-.+.|+..-+...|+|++.+.=.-..+.....+
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence            99999999999999999999986544444444433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.01  E-value=0.36  Score=47.09  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh
Q 023491           50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS----SEVYQNLQARLKTQL  125 (281)
Q Consensus        50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~----~~~a~~~l~~l~~~l  125 (281)
                      =|..+|..|+|.+|.-....+.+++| ++.+|..+|.|++..++|.+|..++..   +-|+    +..++..+..+.+.+
T Consensus       468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence            34556789999999999999999999 999999999999999999999988754   3333    334556666666655


Q ss_pred             h
Q 023491          126 S  126 (281)
Q Consensus       126 ~  126 (281)
                      .
T Consensus       544 ~  544 (549)
T PF07079_consen  544 P  544 (549)
T ss_pred             h
Confidence            4

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.98  E-value=1.9  Score=39.14  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CC
Q 023491            6 APANKIERAHQLYR-DGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----YN   76 (281)
Q Consensus         6 ~a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----p~   76 (281)
                      .+...+.++...|+ .++|++|..++.+|+...+.+.   .-+.+|-..|.....+..+.++...|+++..+.     |+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            34455555555554 5899999999999986533222   224556677777778899999999999998764     33


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Q 023491           77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQARLKT  123 (281)
Q Consensus        77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~---~~~a~~~l~~l~~  123 (281)
                      .+..-...|.-.....+-+.|++.|++++.+--.   ...+..+++.+-+
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            3333344444455667889999999998886433   3344444444443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.91  E-value=0.35  Score=44.75  Aligned_cols=61  Identities=23%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL  105 (281)
                      .++...|..|...|.+.+|++.+++++.++|-+-..++.+-++|..+|+--+|+..|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3444578889999999999999999999999999999999999999999999999887653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.44  Score=43.52  Aligned_cols=74  Identities=24%  Similarity=0.223  Sum_probs=65.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      ..=..+...+++..|+.+-.+.|.+   +|.++.-..-+|.+|.++|.+..|+.+++..++..|+.+.+-+.++...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l---~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDL---NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhh---CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3445677889999999999999999   9999999999999999999999999999999999999998877766543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.74  E-value=0.95  Score=37.85  Aligned_cols=110  Identities=12%  Similarity=-0.009  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ...+++.....+...+..++..++...--+   .|....+-..-|..+...|+|.+|+..++.+..-.+..+-+--.++.
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~   86 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL   86 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence            345667777788889999988877766555   88888898999999999999999999999998888888888889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      |++.+|+-.-=.... .++..+ .++.+..+...+
T Consensus        87 CL~al~Dp~Wr~~A~-~~le~~-~~~~a~~Lv~al  119 (153)
T TIGR02561        87 CLNAKGDAEWHVHAD-EVLARD-ADADAVALVRAL  119 (153)
T ss_pred             HHHhcCChHHHHHHH-HHHHhC-CCHhHHHHHHHH
Confidence            999999855433222 234443 445555544444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.40  E-value=1.1  Score=42.92  Aligned_cols=106  Identities=13%  Similarity=0.059  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhcCCCHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLK---LHDFKKAAEECTSV-LELDYNHTGA   80 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~k---lg~y~~Ai~~~~~a-l~i~p~~~~a   80 (281)
                      ++....+.=..|-..++|+.-+.+.+..-.+.. .-+......+.+|.++-+   .|+.++|+..+..+ ..-.+.++..
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            445555555667777888888888777555311 123456677888999988   99999999999995 4555678899


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 023491           81 LMLRAQTLVTL---------KEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        81 ~~~lg~a~~~~---------g~~~eAl~~~ekAL~ldP~~  111 (281)
                      |..+|.+|-.+         ..+..|+.+|.++.+++|+.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            99999988553         24789999999999999753

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.35  E-value=1.6  Score=43.14  Aligned_cols=100  Identities=13%  Similarity=0.054  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH--------   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~--------   77 (281)
                      .+..+.-+|.....-+.|+.|..+|..|+++.......+-+..|+|..|++.|+-+.--+.++.   +.|.+        
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~  442 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR  442 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence            5667778888888889999999999999998543444566678899999998775543333333   34432        


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           78 --TGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        78 --~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                        ..++|..|...+..+++.+|...+.+.|+..
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence              2478889999999999999999999999986

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.22  E-value=0.15  Score=32.50  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+|..||.+.+..++|..|+.+|++||.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46788888888899999999999888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.00  E-value=0.98  Score=33.65  Aligned_cols=61  Identities=13%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---ALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ....|.-+|...+..+|+..+.++++.-++...   ++-.+..+|+.+|+|++++++--+-+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445778888999999999999999999877665   4555667899999999999886655544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.95  E-value=0.37  Score=43.04  Aligned_cols=62  Identities=10%  Similarity=-0.054  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        63 Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |+.+|..|+.+.|.+...|..+|.++...|+.-.|+-+|-|++-..-..+.+..++..+-..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            55667777777777777777777777777777777777777765544445555555555444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.87  E-value=0.65  Score=36.83  Aligned_cols=70  Identities=19%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 023491           50 RAACYLKLHDFKKAAEECTSVLELDYNHT---GALMLRAQTLVTLKE-----------YNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~~~lg~a~~~~g~-----------~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      +|..++..|++-+|++..+.++..+.++.   -.+..-|.+++.+..           +..|+.+|.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57788999999999999999999988765   455666888877643           6789999999999999875554


Q ss_pred             HHHH
Q 023491          116 NLQA  119 (281)
Q Consensus       116 ~~l~  119 (281)
                      ..++
T Consensus        82 ~~la   85 (111)
T PF04781_consen   82 FELA   85 (111)
T ss_pred             HHHH
Confidence            4443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=1.4  Score=42.54  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhcCCCHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKI--K-QQKIALHSNRAACYLKLHDFKKAAEECTSVL----ELDYNHTGALM   82 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~--~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al----~i~p~~~~a~~   82 (281)
                      ++-....+-..|+...-...+...+.....  + ...+.+.+.+-.+|+..+.|+.|-....++.    ..+...++.+|
T Consensus       172 ~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~y  251 (493)
T KOG2581|consen  172 YFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLY  251 (493)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHH
Confidence            333444444455555555555555554331  2 2335566677788999999999988887764    11224567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      ++|.+..-.++|..|..+|-.|+...|...
T Consensus       252 Y~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  252 YLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            999999999999999999999999999744

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.64  E-value=1.8  Score=43.50  Aligned_cols=105  Identities=16%  Similarity=0.094  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHH
Q 023491            9 NKIERAHQLYRDG-----RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH---DFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         9 ~l~~~G~~~~~~g-----dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      +....|.+|++..     ++..|+.+|.++...     ....+.+.+|.|++.-.   ++..|..+|..|..  ..+..+
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A  362 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILA  362 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHH
Confidence            3456777787743     788899999999886     34566777888888755   67899999988854  358889


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           81 LMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        81 ~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ++++|.||..    ..+...|..+|.++-+.+  +..+...+..+.
T Consensus       363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            9999998864    357899999999999887  334334443333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.51  E-value=2.1  Score=43.10  Aligned_cols=116  Identities=16%  Similarity=0.020  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 023491            6 APANKIERAHQLYRD-----GRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLH-----DFKKAAEECTSVLEL   73 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~-----gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg-----~y~~Ai~~~~~al~i   73 (281)
                      ++......|.+++.-     ++...|+.+|..++....  ..-....+.+.+|.||++..     ++..|+..|.++-..
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~  322 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL  322 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence            455556667777654     699999999999987100  01114557888999999854     788899999888654


Q ss_pred             cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           74 DYNHTGALMLRAQTLVTLK---EYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g---~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                        .++.+.|++|.++..-.   ++..|..+|..|...  ++..+...++.|...-
T Consensus       323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence              47788899999987765   678999999988765  5566666666665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.49  E-value=3.2  Score=37.74  Aligned_cols=99  Identities=13%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhh-hcCc----ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cC---CC------
Q 023491           17 LYRDGRYEEALGFYTEALSVA-KIKQ----QKIALHSNRAACYLKLH-DFKKAAEECTSVLEL----DY---NH------   77 (281)
Q Consensus        17 ~~~~gdy~eAl~~y~~aL~~~-~~~p----~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i----~p---~~------   77 (281)
                      +.+.|+++.|..+|.++-.+. ...|    ..+..+|+.|...+..+ +|..|+.++++++.+    ..   .+      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987764 2233    34677899999999999 999999999999888    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCCHHHH
Q 023491           78 -TGALMLRAQTLVTLKEYNSALF---DVNRLIELNPSSEVYQ  115 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~~~eAl~---~~ekAL~ldP~~~~a~  115 (281)
                       ..++..++.+|...+.++...+   .++.+-.-.|+.+.+.
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             2478889999999888655444   4444444456655555

It is also involved in sporulation [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.45  E-value=0.49  Score=29.73  Aligned_cols=32  Identities=19%  Similarity=0.076  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFD--VNRLIELNPS  110 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~--~ekAL~ldP~  110 (281)
                      +.++.+|..++.+|++++|+..  |+-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456666666666666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.43  E-value=2.5  Score=40.77  Aligned_cols=96  Identities=16%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIAL-HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a-~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      +-++.-.++..+..|+|+.|...|+-.+.    +|..-.+ +..+-..-.++|.++.|+.+...+-...|.-.-++...-
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL  195 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL  195 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence            44566778899999999999999998877    5543322 222223345799999999999999999998888887777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      ...+..|+|+.|++.+.....
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHH
Confidence            788999999999999865443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.42  E-value=3.6  Score=37.92  Aligned_cols=67  Identities=13%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .....++..++..+...|+++.++..+.+.+..+|-+-..|..+-.+|+..|+...|+..|+++-.+
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3567788889999999999999999999999999999999999999999999999999999887664

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.38  E-value=0.82  Score=46.40  Aligned_cols=72  Identities=14%  Similarity=0.031  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDY------NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      +-|-|.-+|+..+|..+++.|...++.-+      .+++....++.||..+.+++.|++.++.|-+.+|.+.-.+...
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34578889999999999999999987654      4567888999999999999999999999999999887655544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.30  E-value=1.9  Score=36.05  Aligned_cols=80  Identities=15%  Similarity=0.003  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.....+-+...+.+++...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+.+..-.+..+-...+++.+...++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444555568999999999988888899999999999999999999999999999999888888988899988887764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.71  E-value=1.1  Score=43.26  Aligned_cols=97  Identities=12%  Similarity=0.046  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C----CCHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----Y----NHTG   79 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p----~~~~   79 (281)
                      .++.+.|.-|...|+++.|+.+|.++-.+++..-..+..+.|+-.+-.-+|+|-.......+|...-    .    -.++
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            3566788889999999999999999888877667778888888888888999999888888886651    0    1234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      ....-|.+++.+++|..|.+.|-.+
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5566677778888999999988544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.34  E-value=4  Score=38.10  Aligned_cols=101  Identities=13%  Similarity=-0.063  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGR------------YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gd------------y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      +|.+.+.|+......-..-.            .+..+..|++||..   +|.+..++..+-.+..+..+-+....-++++
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---np~~~~L~l~~l~~~~~~~~~~~l~~~we~~   91 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---NPDSERLLLGYLEEGEKVWDSEKLAKKWEEL   91 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            56666666655533332211            23445556666665   6666666555555555666666666666666


Q ss_pred             HHhcCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHH
Q 023491           71 LELDYNHTGALMLRAQTL---VTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~---~~~g~~~eAl~~~ekAL~  106 (281)
                      +..+|.+...|...-...   +..-.+...+..|.+||.
T Consensus        92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~  130 (321)
T PF08424_consen   92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR  130 (321)
T ss_pred             HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            666666555443332211   122235555555555553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.30  E-value=1.6  Score=35.39  Aligned_cols=67  Identities=25%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQ----QKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p----~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +-.+--++..+...|+|++++..-..+|.+++    .+.    .=+.+.+++|.++--+|..++|+..|+.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44555677788899999999999999998875    222    23667799999999999999999999988553

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.17  E-value=9.1  Score=35.66  Aligned_cols=58  Identities=10%  Similarity=-0.035  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        60 y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                      .+..+..|++||+.+|++...+..+-.+..+...-.....-+++++..+|++..++..
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~  104 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWRE  104 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            5667788888888888888877777777778888888888888888888887665544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=90.96  E-value=0.48  Score=44.30  Aligned_cols=82  Identities=13%  Similarity=0.006  Sum_probs=70.1

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML-RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~-lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      -+.+..+|...+....+.|.|.+.-..|..++..+|.++..|.. -+.-+.-.+++..+.+.|.++|+++|.++.+|...
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            56778888888888888999999999999999999999998877 35557788999999999999999999999877654


Q ss_pred             HHH
Q 023491          119 ARL  121 (281)
Q Consensus       119 ~~l  121 (281)
                      =++
T Consensus       183 fr~  185 (435)
T COG5191         183 FRM  185 (435)
T ss_pred             HHH
Confidence            433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.85  E-value=0.31  Score=27.98  Aligned_cols=23  Identities=17%  Similarity=0.065  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVN  102 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~e  102 (281)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.70  E-value=0.4  Score=46.32  Aligned_cols=59  Identities=14%  Similarity=0.193  Sum_probs=45.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH-H-------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           49 NRAACYLKLHDFKKAAEECTSV-L-------ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        49 nra~~~~klg~y~~Ai~~~~~a-l-------~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+..++.-+|+|..|++.++.+ +       ++-+.+...+|..|.+|..+++|..|++.|..+|-.
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666799999999987664 1       112345678999999999999999999999887753

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.57  E-value=2.6  Score=44.25  Aligned_cols=99  Identities=15%  Similarity=0.022  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------h---h-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSV-------A---K-------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~-------~---~-------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      .+++.|..+-..++...|+++|+++---       .   +       ..-.+..+|.-.|..+-..|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4667777777888999999999875211       0   0       233455777778888888999999999998873


Q ss_pred             Hhc---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           72 ELD---------------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        72 ~i~---------------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ...                     ..+..+-|.+|..|...|++.+|+..|.+|..+
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            321                     344568899999999999999999998776544

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.12  E-value=7.1  Score=37.43  Aligned_cols=63  Identities=21%  Similarity=0.222  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACY--LKLHDFKKAAEECTSVLE   72 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~--~klg~y~~Ai~~~~~al~   72 (281)
                      ....++..+|..++|..|...|...+...+.... ...+..++.+|  ...-+|.+|...++.++.
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4457889999999999999999999885221111 45566666555  457789999999987664

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.10  E-value=8  Score=33.54  Aligned_cols=98  Identities=8%  Similarity=0.023  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL-ELDYNHTGALMLRAQ   86 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al-~i~p~~~~a~~~lg~   86 (281)
                      +.+..|......|+-..|+..|..+-.-.+ .....-.+++.-|.+++..|.|+....-.+.+- ..+|-...+--.||.
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl  175 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL  175 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence            345566677777788888888777655321 111223455666667777777777665554431 112223346667889


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~  106 (281)
                      +-++.|++..|...|.....
T Consensus       176 Aa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         176 AAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhccchHHHHHHHHHHHc
Confidence            99999999999999988776

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.06  E-value=5.6  Score=36.51  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HH
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYN-SA   97 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~-eA   97 (281)
                      ...-..|+.+-..+|.+   +|.+-.+|..|-.|+..++ ++.+-+.+++.++.-+|.+-.+|.-+-.+....|+.. .-
T Consensus        56 ~E~S~RAl~LT~d~i~l---NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   56 NEKSPRALQLTEDAIRL---NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             cccCHHHHHHHHHHHHh---CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            45668899999999999   8888888877777776654 6888899999999999999999999999999999888 88


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           98 LFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.....+|..+..|=.++....-+.+.++
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~  161 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFK  161 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence            89999999988887777766665555544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.05  E-value=1.4  Score=38.54  Aligned_cols=72  Identities=24%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHH
Q 023491           24 EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----HTGALMLRAQTLVTLKEYNSAL   98 (281)
Q Consensus        24 ~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~~~a~~~lg~a~~~~g~~~eAl   98 (281)
                      ..|...|-++-..  ..-.++.+.+.+|..|. ..+-.+|+..+-++|++...    ++..+..|+.+++++|+++.|-
T Consensus       123 ~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4566666554332  12245777777776654 67899999999999988643    5789999999999999998884

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.85  E-value=1.4  Score=39.29  Aligned_cols=62  Identities=13%  Similarity=-0.048  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491           26 ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT   90 (281)
Q Consensus        26 Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~   90 (281)
                      |..+|.+|+.+   .|.....|+.+|.++...|+.-.|+-+|-+++-..-.++.+.-++...+.+
T Consensus         1 A~~~Y~~A~~l---~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRL---LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHh---CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999   999999999999999999999999999999998877788888898888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.71  E-value=1  Score=48.87  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----   73 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----   73 (281)
                      |..+..+..++..+.+.+++++|+..-.++..+..     ..+.+...|.+++...+..++...|+..+.++..+     
T Consensus       970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen  970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence            55678889999999999999999998877776654     56788899999999999999999999999888765     


Q ss_pred             ---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           74 ---DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        74 ---~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                         .|.-+...-+++.++..++.++.|+.+++.|+.+.
T Consensus      1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence               35555667888999999999999999999999864

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.69  E-value=7.9  Score=35.92  Aligned_cols=91  Identities=14%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhh----------------hcCcccHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTE---------------ALSVA----------------KIKQQKIALHSNRA   51 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~---------------aL~~~----------------~~~p~~~~a~~nra   51 (281)
                      .|.+..+....+.+++..|+.+.|...|..               .|.+.                ..+|.+..+.+.+|
T Consensus       164 ~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA  243 (304)
T COG3118         164 APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALA  243 (304)
T ss_pred             CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence            466778888899999999999887777655               12221                16889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRAQTLVTLKE   93 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg~a~~~~g~   93 (281)
                      ..|...|+++.|+..+-..++.+...  ..+--.+-.++..+|.
T Consensus       244 ~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         244 DQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            99999999999999998888876543  2333333334444443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.27  E-value=0.92  Score=49.15  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Q 023491            5 AAPANKIERAHQLYRDGRYEEALG------FYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----   74 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~------~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----   74 (281)
                      ..+....+.|......+.+.+|.+      ++.+....  .+|..+.+|..++..+.++|++++|+..+.++.-+.    
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence            356667788999999999998888      44443332  578889999999999999999999999998886543    


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           75 ----YNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        75 ----p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                          ++....|.+++...+..++...|+..+.+++.+
T Consensus      1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence                345568999999999999999999999999887

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.20  E-value=4.3  Score=34.61  Aligned_cols=68  Identities=9%  Similarity=0.063  Sum_probs=56.6

Q ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                      ...-.++..+|..|++.|++..|++.|.++.......   ...++++-.+.+..++|......+.++-.+-
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3446778899999999999999999999987765432   3467888888999999999999999988764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.20  E-value=4.9  Score=35.97  Aligned_cols=83  Identities=17%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcC
Q 023491           22 RYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------HTGALMLRAQTLVTLK   92 (281)
Q Consensus        22 dy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------~~~a~~~lg~a~~~~g   92 (281)
                      .-...|.++.+|+..+.   .......+...+|.-|++.|+|++|+..|+.+......      ...++..+..|+..+|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            34456777777777654   12233555678999999999999999999999655432      1247778888999999


Q ss_pred             CHHHHHHHHHHH
Q 023491           93 EYNSALFDVNRL  104 (281)
Q Consensus        93 ~~~eAl~~~ekA  104 (281)
                      +.+..+...-++
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            988887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.06  E-value=2.8  Score=37.55  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      +++.+.+.+||.....-++..|.+..+...+-+.|+-.|+|+.|+..++-+-++.|+
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            334444445555544444445544444444444444555555555555544444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.04  E-value=4.7  Score=40.61  Aligned_cols=90  Identities=16%  Similarity=-0.004  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhcCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491           26 ALGFYTEALSVAKIKQQKIALHSN--RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNR  103 (281)
Q Consensus        26 Al~~y~~aL~~~~~~p~~~~a~~n--ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ek  103 (281)
                      |+..|...+.+   ++.+..+++.  ++..+..++....++-.+..++..+|.++.++.++|.++...|..-.++..+..
T Consensus        50 ~~~a~~~~~~~---~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~  126 (620)
T COG3914          50 AIYALLLGIAI---NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE  126 (620)
T ss_pred             HHHHHHccCcc---CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            55555555555   5555544322  688888899999999999999999999999999999999888887777666655


Q ss_pred             -HHHhCCCCHHHHHHH
Q 023491          104 -LIELNPSSEVYQNLQ  118 (281)
Q Consensus       104 -AL~ldP~~~~a~~~l  118 (281)
                       ++.+.|.+..+...+
T Consensus       127 ~a~~~~~~~~~~~~~~  142 (620)
T COG3914         127 IAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHhcCcchHHHHhhH
Confidence             999999998877776

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.93  E-value=0.75  Score=29.31  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +|..+|-+.+..++|..|+.+|.+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4556777777777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=88.73  E-value=4.7  Score=41.21  Aligned_cols=104  Identities=15%  Similarity=0.034  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ---KIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~---~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~   81 (281)
                      +++.-.+.|+.+-.+.-+.+|.+.|++.|.+++ -|.   ....|+-....-+.....+.|...|++||...|. +++.+
T Consensus       510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti  588 (835)
T KOG2047|consen  510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI  588 (835)
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            567778888888888899999999999998865 222   2344555555555666899999999999998874 45554


Q ss_pred             HHH-HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           82 MLR-AQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        82 ~~l-g~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      |.+ |..-..-|--..|+..|++|...-+.
T Consensus       589 yLlYA~lEEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  589 YLLYAKLEEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence            444 66667778888888888887665443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.72  E-value=1.8  Score=28.50  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=18.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      +.+|.+|+.+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5667777777777777777777773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.62  E-value=4.1  Score=33.61  Aligned_cols=54  Identities=22%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           76 NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      .-....+.++...+..|+|+.|+.....++..+|+|..++.+++.+.+.+....
T Consensus        68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            455677888888888888888888888888888888888888888888776553

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.59  E-value=15  Score=37.34  Aligned_cols=123  Identities=16%  Similarity=0.111  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----C
Q 023491            6 APANKIERAHQLY-RDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----H   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~-~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~   77 (281)
                      .+...+..|..++ ...+++.|..++.+++.++..+.   ....+.+-++.++++.+... |+..+.++|+....    .
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            4567788898888 67899999999999998865311   22455566788888888777 99999999987655    3


Q ss_pred             HHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhcCC
Q 023491           78 TGALMLRA--QTLVTLKEYNSALFDVNRLIELN--PSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        78 ~~a~~~lg--~a~~~~g~~~eAl~~~ekAL~ld--P~~~~a~~~l~~l~~~l~~~~  129 (281)
                      +...|++-  ..+...+++..|+..++....+.  .++..+......+...+....
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~  192 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR  192 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence            33333333  22223379999999999999886  577777777776766665543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.45  E-value=18  Score=32.45  Aligned_cols=95  Identities=17%  Similarity=0.026  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 023491           10 KIERAHQLYRD-----G--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus        10 l~~~G~~~~~~-----g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      .+..|..+..-     -  +...|+..|.++...   .  +..+.+++|.+|..    ..++.+|+.+|.++-+...  .
T Consensus       151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~---~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~  223 (292)
T COG0790         151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL---G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--G  223 (292)
T ss_pred             HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh---c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--H
Confidence            45555555543     1  334788889888876   3  77888999988876    3489999999999988776  8


Q ss_pred             HHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCCH
Q 023491           79 GALMLRAQTLVTLK---------------EYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        79 ~a~~~lg~a~~~~g---------------~~~eAl~~~ekAL~ldP~~~  112 (281)
                      .++++++ +++..|               +...|+..+..+....+...
T Consensus       224 ~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         224 AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            8999999 777666               88889999988888766543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.36  E-value=1.8  Score=27.13  Aligned_cols=31  Identities=13%  Similarity=0.046  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCC
Q 023491           46 LHSNRAACYLKLHDFKKAAEE--CTSVLELDYN   76 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~--~~~al~i~p~   76 (281)
                      .++.+|..++..|+|++|+..  |.-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            355677777777777777777  3366555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.25  E-value=2.8  Score=38.64  Aligned_cols=62  Identities=11%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE   72 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~   72 (281)
                      .++..++..+...|+++.++..+++.+..   +|.+-.+|..+-.+|++.|+...|+..|.++-.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            45677888889999999999999999999   999999999999999999999999999988744

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.19  E-value=2.3  Score=41.16  Aligned_cols=99  Identities=16%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAK------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      +-+...+.-.|||..|++..... .+..      --+....++|..|.||+-+++|.+|+..|..++-.-...-..++.+
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~  204 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR  204 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            34456667789999999885542 1110      1345678899999999999999999999999864321111111111


Q ss_pred             HHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 023491           85 AQTL-VTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        85 g~a~-~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ..-+ .-.+..+.....+--|+.+.|.
T Consensus       205 ~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  205 SYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            1111 1124455555666666666774

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.02  E-value=3.1  Score=44.49  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=72.3

Q ss_pred             CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHH
Q 023491           22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK-----EYNS   96 (281)
Q Consensus        22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g-----~~~e   96 (281)
                      .+.+|+.-|...-.    .+-.+-=|+..|.+|.++|+|++-+++|..|++..|.++..-..+-.+-+++.     .-..
T Consensus       534 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (932)
T PRK13184        534 DFTQALSEFSYLHG----GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE  609 (932)
T ss_pred             HHHHHHHHHHHhcC----CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            45556665555433    45556668999999999999999999999999999999976665555544443     3567


Q ss_pred             HHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh
Q 023491           97 ALFDVNRLIELNPSSEV---YQNLQARLKTQLS  126 (281)
Q Consensus        97 Al~~~ekAL~ldP~~~~---a~~~l~~l~~~l~  126 (281)
                      |+..+--++...|....   -...+..++.+..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  642 (932)
T PRK13184        610 ALVFMLLALWIAPEKISSREEEKFLEILYHKQQ  642 (932)
T ss_pred             HHHHHHHHHHhCcccccchHHHHHHHHHHhhcc
Confidence            78888889999997544   3444555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.73  E-value=0.73  Score=26.37  Aligned_cols=24  Identities=17%  Similarity=-0.025  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.70  E-value=9.6  Score=33.39  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYN-HT--GALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~--~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      +-+.+|..+...|++++|+..+..++..-.+ +.  -+-+++|.++++.|++++|+..+...
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            3467888889999999999999999854433 22  35678899999999999999988643

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.60  E-value=2.5  Score=37.86  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      .....+.|..++..|+|..|+.+|..+.....   .......+...+..|++++|+.+..+..+-+++
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34556899999999999999999999976543   233556677888999999999999998887664

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.19  E-value=19  Score=36.41  Aligned_cols=102  Identities=20%  Similarity=0.134  Sum_probs=71.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------------cCcccHHHH---HHHHHHHHHcCCHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK------------------IKQQKIALH---SNRAACYLKLHDFK   61 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------------~~p~~~~a~---~nra~~~~klg~y~   61 (281)
                      +|.....+++.+..+-.+|+...|..+..++|....                  ..+.+-.+|   +..-..+-+.|-+.
T Consensus       280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r  359 (665)
T KOG2422|consen  280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR  359 (665)
T ss_pred             CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence            688899999999999999999999999999987753                  222222222   22223344689999


Q ss_pred             HHHHHHHHHHHhcCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           62 KAAEECTSVLELDYN-HTGA-LMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        62 ~Ai~~~~~al~i~p~-~~~a-~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      .|.++|.-++.++|. ++-+ ++.+-....+..+|+--+..++..
T Consensus       360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999997 6643 333333445556666666555544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.61  E-value=7.5  Score=38.59  Aligned_cols=95  Identities=22%  Similarity=0.133  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCH--
Q 023491            7 PANKIERAHQLYR-DGRYEEALGFYTEALSVAKIK----QQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHT--   78 (281)
Q Consensus         7 a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~----p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~--   78 (281)
                      +..+.+.|..++. .++.+.|..++++|..+...-    .....++..++.+|.+.. .+..|...++++|++...++  
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w  125 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW  125 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence            4455677766654 578999999999998876422    344677888999998887 89999999999999987654  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHH
Q 023491           79 --GALMLRAQTLVTLKEYNSALFDV  101 (281)
Q Consensus        79 --~a~~~lg~a~~~~g~~~eAl~~~  101 (281)
                        +.+|.+++++.-.+++..|+..+
T Consensus       126 sckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  126 SCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             hHHHHHHHHHHHhhhccchhHHHHH
Confidence              57888999999999999999875

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.95  E-value=13  Score=38.21  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK---------IKQ------QKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p------~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      +..|.+-|..-++..+++.|+.+..+|...-.         ..|      ....+|...+...-.+|-|+.....|.++|
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34555556556666666666666666655311         011      112233344444444566666666666666


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      .+.=-.+..-.|.|..+....-+++|.+.|++.+.|.+
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            66655666666666666665566666666666555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.58  E-value=19  Score=34.94  Aligned_cols=98  Identities=12%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      -......|+|+.|+++........-     .+...+.++.-.+... -.-+...|..+...++++.|+...+-..-+.+|
T Consensus       195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral  273 (531)
T COG3898         195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARAL  273 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence            3455678999999999877654311     1112223333233222 233577788888888999999888888888899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           89 VTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        89 ~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      ++.|+..++-..++.+-+..|.-.
T Consensus       274 f~d~~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         274 FRDGNLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             HhccchhhhhhHHHHHHhcCCChH
Confidence            999999998888888888877533

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.48  E-value=7.1  Score=34.24  Aligned_cols=67  Identities=12%  Similarity=-0.005  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhcC
Q 023491           60 FKKAAEECTSVLELDY--NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS----SEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        60 y~~Ai~~~~~al~i~p--~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~----~~~a~~~l~~l~~~l~~~  128 (281)
                      -..|...|-.+ +..+  +.+...+.+|..|. ..+-..|+..|.++|++...    |+.+...++.+-..++..
T Consensus       122 d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  122 DQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             cHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            34566655443 2222  46777888887666 56889999999999998654    467777777776666544

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.18  E-value=5.9  Score=37.54  Aligned_cols=99  Identities=16%  Similarity=0.061  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491           22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL--DYNHTGALMLRAQTLVTLKEYNSALF   99 (281)
Q Consensus        22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i--~p~~~~a~~~lg~a~~~~g~~~eAl~   99 (281)
                      +|..-..+|.-...+   .| .+.+-.|++.+.-+.--...++...+.+..-  -..+.-.+-.+|..+.++|+..+|..
T Consensus       311 DW~~I~aLYdaL~~~---ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~  386 (415)
T COG4941         311 DWPAIDALYDALEQA---AP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA  386 (415)
T ss_pred             ChHHHHHHHHHHHHh---CC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH
Confidence            555555566555554   22 3455677888877666667777776665443  12455577788999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491          100 DVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus       100 ~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .|.+++.+.++..+...++.++-..
T Consensus       387 aydrAi~La~~~aer~~l~~r~~~l  411 (415)
T COG4941         387 AYDRAIALARNAAERAFLRQRLDRL  411 (415)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHh
Confidence            9999999998888877776665443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.68  E-value=25  Score=35.70  Aligned_cols=94  Identities=15%  Similarity=0.066  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-----------------------cccHHHHHHHHHHHHHcCCHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK-----------------------QQKIALHSNRAACYLKLHDFKKAAE   65 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-----------------------p~~~~a~~nra~~~~klg~y~~Ai~   65 (281)
                      .+.--|..+...+..+.|..++.++++.....                       -....+.+.++.+.+-++++..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            34455777777777778888888887765310                       1134456778888888999999999


Q ss_pred             HHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491           66 ECTSVLELDY---------NHTGALMLRAQTLVTLKEYNSALFDVN  102 (281)
Q Consensus        66 ~~~~al~i~p---------~~~~a~~~lg~a~~~~g~~~eAl~~~e  102 (281)
                      .+..+.....         -.+..+|..|..+...|+.+.|+..|.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            9988876532         136689999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.66  E-value=13  Score=35.41  Aligned_cols=98  Identities=17%  Similarity=0.098  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ-K-IALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----HTGALM   82 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~-~-~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----~~~a~~   82 (281)
                      ++.....+.++|.|..|++.-.-.+.+   +|. + ..+++.+=...++.++|+=-+..+.........     -+...|
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsL---dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~  182 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSL---DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF  182 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhc---CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence            445667788899999999999999998   655 4 334455556667889998888888776552211     335778


Q ss_pred             HHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 023491           83 LRAQTLVTLKEY---------------NSALFDVNRLIELNPS  110 (281)
Q Consensus        83 ~lg~a~~~~g~~---------------~eAl~~~ekAL~ldP~  110 (281)
                      .++.+++.+++-               +.|...+.+|+...|.
T Consensus       183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            899999999998               8999999999999884

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.59  E-value=3  Score=40.94  Aligned_cols=46  Identities=11%  Similarity=0.006  Sum_probs=34.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491           55 LKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        55 ~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL  105 (281)
                      +++|+++.|.+.+...     ++...|-.||.+....|+++-|..+|+++-
T Consensus       329 l~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  329 LQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            4566666666555444     577889999999999999999999887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=84.58  E-value=6.3  Score=38.77  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      ......|.-+|.+|+|.++.-+-.-..+.   .| .+.+|.-+|.|++..++|.+|..++..+
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~i---aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKI---AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHh---CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            34456677889999999988766666666   77 7889999999999999999999998765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.19  E-value=4  Score=33.73  Aligned_cols=51  Identities=25%  Similarity=0.173  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYN   95 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~   95 (281)
                      .....++...+..|+|.-|+..+..++..+|++..+...++.+|.++|.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            344567788888999999999999999999999999999999988887543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=84.11  E-value=1.9  Score=40.45  Aligned_cols=77  Identities=12%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSN-RAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~n-ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      |.++..|.+.++-..+.|.|..--..|.+++..   +|.+..+|.. -+.-++-.+++..|...|.++|+++++++..|+
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k---hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK---HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            567888888888888999999999999999999   9999998865 445667889999999999999999999998665


Q ss_pred             H
Q 023491           83 L   83 (281)
Q Consensus        83 ~   83 (281)
                      .
T Consensus       181 e  181 (435)
T COG5191         181 E  181 (435)
T ss_pred             H
Confidence            3

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.06  E-value=7.3  Score=28.68  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSV   36 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~   36 (281)
                      +..+..+|..+=+.|+|.+|+.+|+.+|..
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            445556666666667777776666666654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=83.52  E-value=13  Score=37.00  Aligned_cols=74  Identities=9%  Similarity=0.020  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-FKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+...|.....-.-+.+.|.+-...|.+++..   +|.++.+|..-|.-.|..+. .+.|...+.++|+.+|+++..|
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~---Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK---HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence            46667777776666777799999999999999   99999999988877777765 9999999999999999998754

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=83.49  E-value=7  Score=36.73  Aligned_cols=55  Identities=20%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             CccCCCCCCCCCCCCccccccCCCcccccccccccccCCCCCCCCCCCCCccC--CCCCCC
Q 023491          183 EVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAI--PKPKGH  241 (281)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  241 (281)
                      ..||...||+.-..+.++.-.++-    .-++|-||-.+|-.-.-+-+-|-.|  .-|+|-
T Consensus       121 sAIv~EKPNVkWsDVAGLE~AKeA----LKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGT  177 (439)
T KOG0739|consen  121 SAIVREKPNVKWSDVAGLEGAKEA----LKEAVILPIKFPQLFTGKRKPWRGILLYGPPGT  177 (439)
T ss_pred             hhhhccCCCCchhhhccchhHHHH----HHhheeecccchhhhcCCCCcceeEEEeCCCCC
Confidence            578899999987777765544433    3457788888888777777778876  456653

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.44  E-value=3.5  Score=40.88  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEY   94 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~   94 (281)
                      ...+..|+...|......+|+.   .|..+....-++.+...+|.|+.|..++..+=.+-.....+..-+-..++.+|++
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~---~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~  373 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRN---QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW  373 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHh---CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence            3456678888888888888887   6666667777788888899999988888766443333333333333344445555


Q ss_pred             HHHHHHH
Q 023491           95 NSALFDV  101 (281)
Q Consensus        95 ~eAl~~~  101 (281)
                      +.|+..-
T Consensus       374 ~~a~s~a  380 (831)
T PRK15180        374 REALSTA  380 (831)
T ss_pred             HHHHHHH
Confidence            5444433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.81  E-value=9.3  Score=40.09  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVA   37 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~   37 (281)
                      ++.++..|.-+|..|+|++|...|-++|...
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            4566788999999999999999999998764

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.43  E-value=20  Score=34.75  Aligned_cols=108  Identities=18%  Similarity=0.132  Sum_probs=87.3

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCC---
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--FKKAAEECTSVLELDYNHTGALMLRAQTLVT-LKE---   93 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~-~g~---   93 (281)
                      ..-++.-+.+...+|..   +|..-.+|+.|..++.+.+.  +..-+..|.++++++|.+..+|..+-.+... ...   
T Consensus        88 ~~~ld~eL~~~~~~L~~---npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   88 QALLDEELKYVESALKV---NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HHhhHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            33567777888888888   99999999999999988774  7889999999999999999988777555433 333   


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491           94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI  130 (281)
Q Consensus        94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~  130 (281)
                      ..+-+.+..+++.-++.|=.++.....+...+-..+.
T Consensus       165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~  201 (421)
T KOG0529|consen  165 EKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEA  201 (421)
T ss_pred             chhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccc
Confidence            6777888999999999998899988888776655544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=81.90  E-value=0.91  Score=42.95  Aligned_cols=80  Identities=18%  Similarity=0.040  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT   90 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~   90 (281)
                      .+.+.+.++.+.|..|+..-..++..   ++....+++.++..++.+.+++.|++++..+....|++....-.+..+-..
T Consensus       279 ~n~~~~~lk~~~~~~a~~~~~~~~~~---~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  279 RNLAAVGLKVKGRGGARFRTNEALRD---ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             cchHHhcccccCCCcceecccccccc---ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            45677788888888888887777776   888899999999999999999999999999999999988776666555444


Q ss_pred             cCC
Q 023491           91 LKE   93 (281)
Q Consensus        91 ~g~   93 (281)
                      ..+
T Consensus       356 ~~~  358 (372)
T KOG0546|consen  356 KKQ  358 (372)
T ss_pred             HHH
Confidence            433

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.85  E-value=3.6  Score=39.20  Aligned_cols=57  Identities=9%  Similarity=0.075  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKA   63 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~A   63 (281)
                      +..++..|+.++.+++|..|...|..|..++.     .+-.++.++|..|.++++++++..+
T Consensus        41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~  102 (400)
T KOG4563|consen   41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ  102 (400)
T ss_pred             HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678889999999999999999999988743     2223445555555555555554443

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.19  E-value=12  Score=36.60  Aligned_cols=114  Identities=20%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----C-cccHH--------HHHHHHHHH-HHcCC-----HHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKI----K-QQKIA--------LHSNRAACY-LKLHD-----FKKAAEECT   68 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----~-p~~~~--------a~~nra~~~-~klg~-----y~~Ai~~~~   68 (281)
                      ...+..|-.++..|+|.+|+..|...|..++.    + .....        --|.+|... +..+.     .+.....++
T Consensus       205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE  284 (422)
T PF06957_consen  205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE  284 (422)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence            34456889999999999999999999988651    1 10111        123333222 11222     112212222


Q ss_pred             HH-----HHhcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           69 SV-----LELDYNHTGALMLRAQ-TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        69 ~a-----l~i~p~~~~a~~~lg~-a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      -+     ..+.|.|...-++.|. ..++.++|..|....+++|++.|....+......+
T Consensus       285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil  343 (422)
T PF06957_consen  285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKIL  343 (422)
T ss_dssp             HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            22     1222333332233333 45778999999999999999999887665544433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.16  E-value=10  Score=37.81  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |..+....-.+...-..|+|+.|+.....+-..   -.....+.-.+-...+++|+++.|.....-.+.-.=..++.+--
T Consensus       320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i  396 (831)
T PRK15180        320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV  396 (831)
T ss_pred             CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence            334444445677777889999999888776665   22333444455667788999999999888887766667777666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      .|....++|-+++|+-.+.+++.++|..
T Consensus       397 aa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        397 AAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             ecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            6777788899999999999999998753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.02  E-value=4.1  Score=40.76  Aligned_cols=71  Identities=20%  Similarity=0.022  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491            4 PAAPANKIERAHQLYRD---GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~---gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      |.....+-+++.++.++   |+--.|+.--..|+++   +|....+++.++.|+..++.+.+|+.+...+....|.+
T Consensus       405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            55666677788777775   4666777777788888   99999999999999999999999999998888877743

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.44  E-value=12  Score=36.69  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------cCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAK--------IKQQKIALHSNRAACYLKLHDF----------KKAAEECTSV   70 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------~~p~~~~a~~nra~~~~klg~y----------~~Ai~~~~~a   70 (281)
                      .+..+|..+++...|.+|+.++-.|-..+-        .-.+.+.+-..+-.|||++++.          ..|...|.++
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            456889999999999999998877755431        2334455556677899988763          2233333222


Q ss_pred             --------HHhc-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           71 --------LELD-YNHT------GALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        71 --------l~i~-p~~~------~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                              ..+. +..+      +.++.-|.+.+..|+-.+|..+|+.+..
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                    1111 2222      2344559999999999999999987765

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.28  E-value=3.3  Score=27.20  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLE   72 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~   72 (281)
                      .+++|.+|..+|+++.|...+..++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36799999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=80.22  E-value=11  Score=30.67  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK------------QQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~------------p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      .+...|..+++.+++-.++-+|++|+.++..-            .......-|+|..|..+|+-+-.++++.-|
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence            45678999999999999999999999885410            011233456777777788877777777544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		4e-16
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-08
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-08
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-08
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-07
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-07
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		7e-06
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		7e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-05
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-04

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 4   PAAP-ANKIER----AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH 58
           PA P A+ +E+     ++L++ G Y  AL  YT+AL +    Q +  LH NRAAC+LKL 
Sbjct: 20  PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE 79
Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
           D+ KA  E +  +E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q
Sbjct: 80  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 22  RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81
           RY E      E    AK++   ++   N  AC LK+ D++ A + C   LE+D ++T AL
Sbjct: 251 RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 82  MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
             RAQ    LKEY+ AL D+ +  E+ P  +  Q    ++K ++
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 12  ERAHQLYRDGRYEEALGFYTEALS------------VAKIKQQKIALHSNRAACYLKLHD 59
           ER    +++G+Y++AL  Y + +S              K +  ++A H N A C+LKL  
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211
Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN--- 116
           F  A E C   LELD N+   L  R +  + + ++  A  D  ++++L P+++  +    
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 117 -LQARLKTQLS 126
             Q R++ QL+
Sbjct: 272 VCQQRIRRQLA 282

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           ++ +Q +R+ +Y++A+ +Y  AL +    ++    +SN +ACY+ + D KK  E  T  L
Sbjct: 11  DKGNQFFRNKKYDDAIKYYNWALEL----KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
           EL  +++  L+ RA     L ++  A+FD++ L
Sbjct: 67  ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 12  ERAHQLYRDGRYEEALGFYTEALS------------VAKIKQQKIALHSNRAACYLKLHD 59
           ER    +++G+Y++AL  Y + +S              K +  ++A H N A C+LKL  
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211
Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN--- 116
           F  A E C   LELD N+   L  R +  + + ++  A  D  ++++L P+++  +    
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 117 -LQARLKTQLS 126
             Q R++ QL+
Sbjct: 272 VCQQRIRRQLA 282

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           + ++ ++ G Y  A+  Y EA+   K   +   L+SNRAAC  KL +F++A ++C + + 
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
           LD       + +A  LV ++E++ A       ++++PS+E
Sbjct: 76  LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKI------KQQK------IALHSNRAACYLKLHD 59
           E+    ++ G+Y +A+  Y + +S  ++      K+ K      +A   N A CYLKL +
Sbjct: 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332
Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           + KA E C   L LD  +   L  R +  + + E+ SA  D  +++E+NP     QN  A
Sbjct: 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-----QNKAA 387
Query: 120 RLKTQLS 126
           RL+  + 
Sbjct: 388 RLQISMC 394

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 44  IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNR 103
           +A   N A CYLKL ++ KA E C   L LD  +   L  R +  + + E+ SA  D  +
Sbjct: 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 376
Query: 104 LIELNPSSEVYQNLQARLK 122
           ++E+NP     QN  ARL+
Sbjct: 377 VLEVNP-----QNKAARLQ 390

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           + ++ ++ G Y +A+  YTEA+   K   +   L+SNRAACY KL +F+ A ++C   ++
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
           L+         +A  L  +K+Y  A+    + ++L+ S +
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R +  +    + EA+ +Y  A+   ++   +   +SN +ACY+   D +K  E  T  LE
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAI---ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
           +  +H+ AL+ RA    +L  +  A+FD++ L
Sbjct: 88  IKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R +  +    + EA+ +Y  A+   ++   +   +SN +ACY+   D +K  E  T  LE
Sbjct: 27  RGNHFFTAKNFNEAIKYYQYAI---ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
           +  +H+ AL+ RA    +L  +  A+FD++ L
Sbjct: 84  IKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 7   PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           P N  E    L    Y+ G Y++A+ +Y +AL   ++     +   N    Y K  D++K
Sbjct: 5   PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKAL---ELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
           A E     LELD N+  A   R        +Y  A+ D  + +EL+P++
Sbjct: 62  AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALH-SNRAACYLKLHD 59
           M SP+A   K E+ ++L+   +Y EA   Y  A++   +    +A++ +NRA CYLK+  
Sbjct: 4   MKSPSAQELK-EQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQ 58
Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107
            ++A  +C   LELD     A     Q  + ++ Y+ A+ ++ R   L
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALH-SNRAACYLKLHDFK 61
           SP+A   K E+ ++L+   +Y EA   Y  A++   +    +A++ +NRA CYLK+   +
Sbjct: 1   SPSAQELK-EQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE 55
Query: 62  KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107
           +A  +C   LELD     A     Q  + ++ Y+ A+ ++ R   L
Sbjct: 56  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 7   PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           P N  E  + L    Y+ G Y+EA+ +Y +AL   ++         N    Y K  D+ +
Sbjct: 5   PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           A E     LELD N+  A            +Y+ A+    + +EL+P ++E  QNL
Sbjct: 62  AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-21
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-19
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-18
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	9e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 93.6 bits (233), Expect = 6e-24
 Identities = 40/115 (34%), Positives = 61/115 (53%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           +  ++L++ G Y  AL  YT+AL +    Q +  LH NRAAC+LKL D+ KA  E +  +
Sbjct: 33  KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126
           E D     AL  R+Q L  L   + A+ D+ R + L P ++V+Q     +    S
Sbjct: 93  EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 17/137 (12%)

Query: 5   AAPANKIERAHQLYRDGRYEEALGFYTEALSV---------------AKIKQQKIALHSN 49
           +  A + ++ ++L+    Y+EA+  Y +AL+                 ++ ++ I L++N
Sbjct: 10  SVEALR-QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 50  RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            + CYL + D  +A E  + VL+ +  +  AL  RA+  +   + + A  D+  L+  +P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 110 SS-EVYQNLQARLKTQL 125
           ++  V       +  + 
Sbjct: 129 AAASVVAREMKIVTERR 145

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 88.7 bits (220), Expect = 2e-21
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 5   AAPANKIERAHQLYRDGRYEEALGFYTEALSV-------------AKIKQQKIALHSNRA 51
           +A   K E  ++ ++     EA+  Y EAL                K K  +I+ + N A
Sbjct: 37  SAFDIK-EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 52  ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
            CY K  D+ KA +  + VL++D N+  AL       +       A  ++ +   LNP++
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 112 EVYQNLQARLKTQL 125
              +N       +L
Sbjct: 156 LDIRNSYELCVNKL 169

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 89.6 bits (222), Expect = 7e-21
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNRAACYLKLHD 59
           ER    +++G+Y++AL  Y + +S              K +  ++A H N A C+LKL  
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211

Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           F  A E C   LELD N+   L  R +  + + ++  A  D  ++++L P+++  +   A
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271

Query: 120 RLKTQLSLAPIPESEA-------EFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAP 172
             + ++      E +          EEE + + E  +   P   E +E +      + + 
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQ 331

Query: 173 VI 174
           V 
Sbjct: 332 VE 333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNR 50
                A   E+    ++ G+Y +A+  Y + +S                +   +A   N 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323

Query: 51  AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110
           A CYLKL ++ KA E C   L LD  +   L  R +  + + E+ SA  D  +++E+NP 
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383

Query: 111 SEVYQNLQARLKTQLS-------------LAPIPESEAEFEEEEEEEEEEINQAGPYGIE 157
           ++  +   +  + +                    E +A+ E  +   ++           
Sbjct: 384 NKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGT 443

Query: 158 EEEGKSDEKEDA 169
           + +   +EK + 
Sbjct: 444 DSQAMEEEKPEG 455

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E+ ++L+   +Y EA   Y  A+            ++NRA CYLK+   ++A  +C   L
Sbjct: 14  EQGNRLFVGRKYPEAAACYGRAI---TRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
           ELD     A     Q  + ++ Y+ A+ ++ R   L        N    + + L +A   
Sbjct: 71  ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIA--- 125

Query: 132 ESEAEFEEEEEE 143
             +  +   EE 
Sbjct: 126 -KKKRWNSIEER 136

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
               + +    +  A+  YTE +  A    +    +SNRAA   KL  F +A  +C   +
Sbjct: 9   LEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAI 65

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128
           E D N   A + +A   + +KEY SAL  ++     +       + +   +     +
Sbjct: 66  EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 80.7 bits (200), Expect = 3e-19
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
            + ++ ++ G Y +A+  YTEA+   K   +   L+SNRAACY KL +F+ A ++C   +
Sbjct: 21  NKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNLQARLKTQLS 126
           +L+         +A  L  +K+Y  A+    + ++L+ S  E     Q  +  Q +
Sbjct: 78  QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 80.0 bits (198), Expect = 5e-19
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
            + ++ ++ G Y  A+  Y EA+   K   +   L+SNRAAC  KL +F++A ++C + +
Sbjct: 18  NKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122
            LD       + +A  LV ++E++ A       ++++PS+E  +       
Sbjct: 75  RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 5/151 (3%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           S A     +E   +L   G+  +AL  +  A+            +  RA  +L +   K 
Sbjct: 22  SMADVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPDNYIAYYRRATVFLAMGKSKA 78

Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARL 121
           A  + T V++L  + T A + R   L+   + + A  D  ++++ NPS +E  +     +
Sbjct: 79  ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138

Query: 122 KTQLSLAPIPESEAEFEEEEEEE-EEEINQA 151
           K+        ++   F   +       +++ 
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 1/145 (0%)

Query: 8   ANKIERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDFKKAAEE 66
              IE A +L RDGRY +A   Y   +     I +  +        C+ K     +A   
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317

Query: 67  CTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126
           C+ VL+++ ++  AL  RA+  +  + Y+ A+ D     E N + +  +    + +  L 
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377

Query: 127 LAPIPESEAEFEEEEEEEEEEINQA 151
            +   +       +   +++EI +A
Sbjct: 378 QSQKRDYYKILGVKRNAKKQEIIKA 402

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
             +A   +  G Y  A+ F  + L   ++      L   RA C++K  + +KA  +  + 
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKIL---EVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122
            +L  ++T A    +     L ++  +L +V   ++L+   +       ++K
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 9e-11
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNRAACYLKLHDF 60
           R H L + G+ +EA   + + L                IK  ++    ++A       D+
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
             A      +LE+         LRA+  +   E   A+ D+    +L   ++E +  +
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             H   +D +  EA+   +E L   +++   +    +RA  YL    + +A ++  +  E
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVL---QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPE 132
            + N         +    LK+     +     ++ N   +  + ++A  K  L   P   
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ--EIIKAYRKLALQWHPDNF 415

Query: 133 SEAEFEEEEEEEEEEINQA 151
              E +++ E++  +I  A
Sbjct: 416 QNEEEKKKAEKKFIDIAAA 434

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 18/128 (14%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           RA      G+ + AL   T+ +   ++K    A    R    LK     +A ++   VL+
Sbjct: 66  RATVFLAMGKSKAALPDLTKVI---QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

Query: 73  LDYNHTGA---------------LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
            + +                   L  +A       +Y +A+  +++++E+       + L
Sbjct: 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182

Query: 118 QARLKTQL 125
           +A    + 
Sbjct: 183 RAECFIKE 190

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 14/119 (11%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSV---------AKIKQQKIALHSNRAACYLKLHDFKKA 63
            +   Y+ G +E +L    E L +            + +K+      A   ++   +  A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 64  AEECTSVLELDYNHTG----ALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNL 117
             +  SV++ + +       +           ++   A+   + ++++ P +    ++ 
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 20/132 (15%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
                  +  RA    ++G   +A+     A    K+K          +  Y +L D + 
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISDLKAAS---KLKNDNTEAFYKISTLYYQLGDHEL 229

Query: 63  AAEECTSVLELDYNHTGALMLR------------AQTLVTLKEYNSALFDVNRLIELNPS 110
           +  E    L+LD +H                   A+ L+    Y  A      +++  PS
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289

Query: 111 -----SEVYQNL 117
                    + +
Sbjct: 290 IAEYTVRSKERI 301

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 83.5 bits (206), Expect = 1e-18
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSV--------------AKIKQQKIALHSNRAACYLKL 57
              + L+++ + EEA+  Y  A++                     K   H N AAC +KL
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243

Query: 58  HDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
             + +A   C  VL  +  +  AL  R +    L + +SA  D  +  +  P  +  +  
Sbjct: 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRE 303

Query: 118 QARLKTQL 125
              L  Q 
Sbjct: 304 LRALAEQE 311

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
              ++  +   +E A+ FY +A+   ++         NRAA Y KL ++  A ++C   +
Sbjct: 17  TEGNEQMKVENFEAAVHFYGKAI---ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP 129
            +D  ++ A       L +L ++  A+    + +EL+P +E Y++     + +L  AP
Sbjct: 74  CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 5/143 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +E   +L   G+  +AL  +  A+            +  RA  +L +   K A  + T V
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAV---DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAP 129
           + L  + T A + R   L+   + + A  D  ++++ NPS  E  +     +K       
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123

Query: 130 IPESEAEFEEEEEEE-EEEINQA 151
             ++   F+  +       +++ 
Sbjct: 124 RSQALDAFDGADYTAAITFLDKI 146

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 4e-18
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 8   ANKIERAHQLYRDGRYEEALGFYTEALSV-AKIKQQKIALHSNRAACYLKLHDFKKAAEE 66
              IE A +L RDGRY +A   Y   +     + +  +        C+ K     +A   
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294

Query: 67  CTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNLQ 118
           C+ VL+++ ++  AL  RA+  +  + Y+ A+ D     E N +  ++ + L+
Sbjct: 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
             +A   +    Y  A+ F  + L   ++      L   RA C++K  + +KA  +  + 
Sbjct: 124 RSQALDAFDGADYTAAITFLDKIL---EVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            +L  ++T A    +     L ++  +L +V   ++L+      + + 
Sbjct: 181 SKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 13/118 (11%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNRAACYLKLHDF 60
           R H L + G+ +EA   + + L                +K  ++    ++A       D+
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
             A      +LE+         LRA+  +   E   A+ D+    +L   ++E +  +
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 18/128 (14%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           RA      G+ + AL   T+ +    +K    A    R    LK     +A ++   VL+
Sbjct: 43  RATVFLAMGKSKAALPDLTKVI---ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99

Query: 73  LDYNHTGALMLR---------------AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
            + +                       A       +Y +A+  +++++E+       + L
Sbjct: 100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159

Query: 118 QARLKTQL 125
           +A    + 
Sbjct: 160 RAECFIKE 167

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 20/132 (15%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
                  +  RA    ++G   +A+     A    K+K          +  Y +L D + 
Sbjct: 150 CVWDAELRELRAECFIKEGEPRKAISDLKAAS---KLKSDNTEAFYKISTLYYQLGDHEL 206

Query: 63  AAEECTSVLELDYNHTGALMLR------------AQTLVTLKEYNSALFDVNRLIELNPS 110
           +  E    L+LD +H                   A+ L+    Y  A      +++  PS
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266

Query: 111 -----SEVYQNL 117
                    + +
Sbjct: 267 VAEYTVRSKERI 278

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             H   +D +  EA+   +E L   +++   +    +RA  YL    + +A ++  +  E
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVL---QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

Query: 73  LDYNHTGALMLRAQTLVTLKEY 94
            + N         +    LK+ 
Sbjct: 335 HNENDQQIREGLEKAQRLLKQS 356

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 47  HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106
           H       L       A  +  + ++ D ++  A   RA   + + +  +AL D+ ++I 
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65

Query: 107 LNPS-SEVYQNLQARLKTQL 125
           L    +         L  + 
Sbjct: 66  LKMDFTAARLQR-GHLLLKQ 84

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 77.6 bits (192), Expect = 3e-18
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E+ ++    G  ++AL  Y+EA+   K+      L+SNR+A Y K  D++KA E+    +
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAI---KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124
           +L  +       +A  L  L  +  A       ++   ++   +     ++ +
Sbjct: 66  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 78.6 bits (194), Expect = 4e-18
 Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 5/148 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
            +A+  ++   YE A+ FY++A+   ++       + NR+  YL+   +  A  + T  +
Sbjct: 18  TQANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
           ELD  +      RA + + L ++ +AL D   ++++ P  +  +         +      
Sbjct: 75  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--KA 132

Query: 132 ESEAEFEEEEEEEEEEINQAGPYGIEEE 159
              A   +E +    +        IE+E
Sbjct: 133 FERAIAGDEHKRSVVDSLDIESMTIEDE 160

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.6 bits (196), Expect = 1e-17
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 19/226 (8%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           SP+A   K E+ ++L+   +Y EA   Y  A+            ++NRA CYLK+   ++
Sbjct: 1   SPSAQELK-EQGNRLFVGRKYPEAAACYGRAI---TRNPLVAVYYTNRALCYLKMQQPEQ 56

Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122
           A  +C   LELD     A     Q  + ++ Y+ A+ ++ R   L     +         
Sbjct: 57  ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116

Query: 123 TQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGEP 182
            ++         A+ +     EE  I+Q            + E+E       +++     
Sbjct: 117 LRI---------AKKKRWNSIEERRIHQESELHSYLTRLIAAERER------ELEECQRN 161

Query: 183 EVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQD 228
                    I         +  +         + +D   KK  + D
Sbjct: 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPD 207

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 14/154 (9%)

Query: 3   SPAAPANKI-ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK 61
           +P   ++K+    +       Y +A+  YT+AL    I        SNRAA Y      +
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQAL---SIAPANPIYLSNRAAAYSASGQHE 62

Query: 62  KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121
           KAAE+      +D  ++ A          + +Y  A     + IE   +          +
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN-----GGSDAM 117

Query: 122 KTQLSLAPIPESEAEFEEEEEEEEEEINQAGPYG 155
           K  L        + + EE     E   +      
Sbjct: 118 KRGLETT-----KRKIEEANRGAEPPADDVDDAA 146

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E+ + L++ G Y EA+  Y + +     + Q    +SN+A   +KL ++ +A + C   L
Sbjct: 9   EQGNSLFKQGLYREAVHCYDQLI---TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNR-LIELNPSSEVYQN 116
                      +R++    L+    A+  V   ++E++   E Y  
Sbjct: 66  RYTSTAEHVA-IRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 8   ANKI-ERAHQLYRDGRYEEALGFYTEALS-------------VAKIKQQKIALHSNRAAC 53
           +  +    +  ++   +E A+  YT+ L               AK++   ++   N  AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 54  YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113
            LK+ D++ A + C   LE+D ++T AL  RAQ    LKEY+ AL D+ +  E+ P  + 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 114 YQNLQARLKTQL 125
            Q    ++K ++
Sbjct: 343 IQAELLKVKQKI 354

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
               + +    +  A+  YTE +   K   +    +SNRAA   KL  F +A  +C   +
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMI---KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
           E D N   A + +A   + +KEY SAL  ++     +       + +   +   
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
              ++ Y+  +++EA+  Y +A  +     + I   +NRAA   +  +++ A       +
Sbjct: 10  AEGNKFYKARQFDEAIEHYNKAWEL----HKDITYLNNRAAAEYEKGEYETAISTLNDAV 65

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
           E          + +++   +      L D+ + IE    S      
Sbjct: 66  EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            +    R G     LG   + +   +  Q+ +  H   A    KL + +K  ++  +   
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTI---EYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAY 133

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           ++        L  +   T  ++ +A+     +I+  P  +  Y N 
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 4e-10
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A  L +    E+ L           +  +K          Y    D+  A +  T +++
Sbjct: 111 TADILTKLRNAEKELKKAEAEA---YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                      RA  L  L  +  A+ D N+ IE +P+    Y   
Sbjct: 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           RA  L +   + EA+    +A+   +     +  +  +A   + + ++  A E   +   
Sbjct: 179 RAAALAKLMSFPEAIADCNKAI---EKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235

Query: 73  LDYNHTGALMLRAQTLVTLKEY 94
            D         R    +  K  
Sbjct: 236 KDAEVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 47  HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106
                  + K   F +A E      EL  + T  L  RA       EY +A+  +N  +E
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 107 LNPS-SEVYQNL 117
                   Y+ +
Sbjct: 67  QGREMRADYKVI 78

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 16  QLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY 75
             Y+   ++ AL  Y +A    ++    +   +N+AA Y +  D+ K  E C   +E+  
Sbjct: 13  DAYKKKDFDTALKHYDKAK---ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 76  NHTG-------ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
            +         A      +    ++Y  A+   N+ +  + + +V +  Q 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 17/115 (14%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           +  +  Y+   +E+A   Y +A+    +    I  ++N+AA Y +   F +  + C   +
Sbjct: 13  DLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 72  ELDYNHTG-------ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           E+             A+           + + A+   +R +      E+ + ++ 
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           ++ +Q +R+ +Y++A+ +Y  AL   ++K+  +  +SN +ACY+ + D KK  E  T  L
Sbjct: 11  DKGNQFFRNKKYDDAIKYYNWAL---ELKEDPVF-YSNLSACYVSVGDLKKVVEMSTKAL 66

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL-IELNPSSEVYQNLQARLKTQLSLAPI 130
           EL  +++  L+ RA     L ++  A+FD++ L +  + +    + +  R   + +++ +
Sbjct: 67  ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKL 126

Query: 131 PESEAEFEEEEEEEEEEINQ 150
            E   + +       E   Q
Sbjct: 127 KEKFGDIDTATATPTELSTQ 146

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 15/139 (10%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK---------LHDFKKA 63
            A  L     +++AL  Y  A+   +++ +   ++   A    K         + +F +A
Sbjct: 378 FAEILTDKNDFDKALKQYDLAI---ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQAR-- 120
                   +LD     A +  AQ  +  ++ + A+       +L  +  E  Q +     
Sbjct: 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494

Query: 121 LKTQLSLAPIPESEAEFEE 139
            K Q  +   P    + +E
Sbjct: 495 AKVQQRIRSDPVLAKKIQE 513

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                 +       A     +A+ +      ++  +   A      +D  +        L
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
           +LD N++     R Q    L+ Y+ A  D ++  EL+P +       A L  + +     
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FD 355

Query: 132 ESEAEFEE 139
           + E  F E
Sbjct: 356 DCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R    +    Y++A   + +A    ++  + I  +   A    + + F       +    
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAK---ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAPIP 131
                       A+ L    +++ AL   +  IEL      +Y  + A L  + +L    
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI-APLVGKATLLTRN 425

Query: 132 ESEAEFEE 139
            +   F E
Sbjct: 426 PTVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A  +       E   ++ +AL   K+     +++ +R      L ++ +A ++     E
Sbjct: 276 MALIMADRNDSTEYYNYFDKAL---KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           LD  +    +  A       +++      +      P + EV    
Sbjct: 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           I+ A   YR+ ++++    ++EA    +   +   + +  A      +DF KA ++    
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAK---RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398

Query: 71  LELD------YNHTGALMLRAQTLV---TLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +EL+      Y     L+ +A  L    T++ +  A   + +  +L+P S +    L
Sbjct: 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 2/119 (1%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLK-LH 58
           + S  + A+             Y+E+     E ++    + ++    +      + K   
Sbjct: 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217

Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
            F++  ++     +L      +L           +   A  D+ + IEL P    Y  +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 40  KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALF 99
           K +      ++   + +   +  A +     LEL  +        +   V++ +    + 
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE 60

Query: 100 DVNRLIELNP-SSEVYQNL 117
              + +EL P  S+V    
Sbjct: 61  MSTKALELKPDYSKVLLRR 79

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
            +A+  ++   YE A+ FY++A+   ++       + NR+  YL+   +  A  + T  +
Sbjct: 11  TQANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 67

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
           ELD  +      RA + + L ++ +AL D   ++++ P      +  A++K Q     + 
Sbjct: 68  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HDKDAKMKYQECNKIVK 122

Query: 132 ESEAEFEEEEEEEEEEI 148
           +   E     +E +  +
Sbjct: 123 QKAFERAIAGDEHKRSV 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 66.3 bits (162), Expect = 7e-14
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                 Y+ G++++A   +        +            AC   L  +++A +  +   
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALC---MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127
            +D N        A+  + L + + A         L  +   ++ L AR    L  
Sbjct: 80  LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 7/83 (8%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 36  VAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYN 95
           +  + +  +           +   +  A +   ++  LD+      +       +L  Y 
Sbjct: 10  LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69

Query: 96  SALFDVNRLIELNP-SSEVYQNL 117
            AL   +    ++        + 
Sbjct: 70  QALQSYSYGALMDINEPRFPFHA 92

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.7 bits (163), Expect = 8e-14
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 3/112 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
             A+  Y  GR EEA  F+             +      AA Y     F++AA+      
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123
            L  N    +    Q  + LK    A      +I+ +   ++    Q+ L  
Sbjct: 98  ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
                  +  A       ++++A   Y  A     + +       +   C L+L    KA
Sbjct: 67  FYNVDYIMGLAAIYQIKEQFQQAADLYAVAF---ALGKNDYTPVFHTGQCQLRLKAPLKA 123

Query: 64  AEECTSVLELDYNHTGALMLRAQTL 88
            E    V++   +    L ++AQ+ 
Sbjct: 124 KECFELVIQHSNDE--KLKIKAQSY 146

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
             R +  +    + EA+ +Y  A+   ++   +   +SN +ACY+   D +K  E  T  
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAI---ELDPNEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL-IELNPSSEVYQNLQARLKTQLSLAP 129
           LE+  +H+ AL+ RA    +L  +  A+FD++ L +  +      + +  R   + ++  
Sbjct: 86  LEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKV 145

Query: 130 IPESEAEFEEEEEE 143
           + E+ ++ E    +
Sbjct: 146 LNENLSKDEGRGSQ 159

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 16/142 (11%), Positives = 44/142 (30%), Gaps = 6/142 (4%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R    +    Y+ A   + +A     +  + +  +   A    K   F ++         
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQ---SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAPIP 131
                       A+ L    ++++A+   +    L     +++  +   +     LA   
Sbjct: 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432

Query: 132 ESEAEFEEEEEEEE--EEINQA 151
             +    +EE+     + + +A
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKA 454

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                 +      +A     E++++          +   A       + ++  +     +
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           +L+  +      R Q    L++Y +A  D  +   LNP     Y  L
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A  L      +E   F+ +A+    +  +    + +R   Y  L D+K A E+      
Sbjct: 282 LALTLADKENSQEFFKFFQKAV---DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           L+  +    +  A  L    ++  +    N      P   EV    
Sbjct: 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIAL-HSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79
           G +        +   ++  ++Q  A+   NR   +    +F +A +     +ELD N   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 80  ALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                +   ++  +    +    + +E+ P  S+     
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 15/109 (13%), Positives = 24/109 (22%), Gaps = 1/109 (0%)

Query: 9   NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECT 68
           +       +     Y+ A    ++AL                         +       T
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQ-RLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233

Query: 69  SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
               L  N   AL               A   +   I L+P+   Y  L
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 16/143 (11%)

Query: 13  RAHQLYRDGRYEEALGFYTEALS-------------VAKIKQQKIALHSNRAACYLKLHD 59
            A  L   G ++ A+  Y  A                   K   +A  S++    L    
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQN-- 116
           F  A +  T   ELD     A +  AQ  + +++ + A+        L  +  E  Q   
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

Query: 117 LQARLKTQLSLAPIPESEAEFEE 139
                K Q  L   P   A+ E 
Sbjct: 504 FAEAAKIQKRLRADPIISAKMEL 526

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 5/118 (4%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
           + S       +           Y   L   T       +++            +   ++ 
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD---PLRENAALALCYTGIFHFLKNNL 259

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
             A       + L      + +  A TL   +          + ++LNP     Y + 
Sbjct: 260 LDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +E AH+ Y+ G +E A     +     + +     +    ++ + +     ++A   T  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLW---RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           ++ +     A            +   A+      + L P   + Y NL
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A   Y  G  + A+  Y  A+   +++      + N A    +     +A +   + L 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           L   H  +L   A           A+    + +E+ P  +  + NL
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             +     G+ +EA+  Y  AL   ++K   I  + N AA  +   D + A +   S L+
Sbjct: 73  LGNVYKERGQLQEAIEHYRHAL---RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            + +           L  L     A     + IE  P  +  + NL
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            +   ++  R + +  F T A+   K        +SN    Y +    ++A E     L 
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAI---KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           L  +     +  A  LV   +   A+      ++ NP    V  +L
Sbjct: 96  LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A  L   G  E A+  Y  AL   +       + S+       L   ++A       +E
Sbjct: 107 LAAALVAAGDMEGAVQAYVSAL---QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
              N   A            E   A+    + + L+P+  + Y NL
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A+ L   G   EA   Y  AL   ++        +N A    +  + ++A       LE
Sbjct: 277 LANALKEKGSVAEAEDCYNTAL---RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +      A    A  L    +   AL      I ++P  ++ Y N+
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             + L   GR EEA   Y +A+   + +       SN    +    +   A       + 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAI---ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           LD N   A +     L   + ++ A+    R + L+P  + V+ NL
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G    A+  + +A+    +    +  + N      +   F +A       L L  N
Sbjct: 179 FNAQGEIWLAIHHFEKAV---TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           H       A         + A+    R IEL P   + Y NL
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L     ++ A+  Y  AL    +      +H N A  Y +      A +     +EL  +
Sbjct: 213 LKEARIFDRAVAAYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
              A    A  L        A    N  + L P  ++   NL
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G  EEA+  Y +AL   ++  +  A HSN A+   +    ++A       + +   
Sbjct: 315 KREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 77  HTGALMLRAQTLVTLKE 93
              A      TL  +++
Sbjct: 372 FADAYSNMGNTLKEMQD 388

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
               L + G+   A+  Y  A+        ++ ++    + +    +F  A +     + 
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAV---DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
                        Q     KEY  A     +++EL P     Y   
Sbjct: 137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA---AEECTS 69
            A  L+++  Y EA+  + +       K     +++ RA CY +L  +  A    E   S
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLE---AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 70  VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
            +      +       + L+   + + A+      ++ + +  ++Y  +
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 6/108 (5%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           +     Y  G +  A+ +  + +   +       +       Y    ++ KA      VL
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169

Query: 72  ELDYNHTGALMLRAQTLVTLK---EYNSALFDVNRLIELNPSSEVYQN 116
           EL  N     + RA+         +   A     +LIE+         
Sbjct: 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 1/102 (0%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
            Y   +Y+ A        S     + K A         +K      A ++  + ++ D  
Sbjct: 47  YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
                            +  A+  + + I       +V+  L
Sbjct: 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 15/124 (12%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK---AAEECTS 69
                Y +  Y +A   + + L   ++K      +  RA          K   A      
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVL---ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204

Query: 70  VLELDYNHTG--------ALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQAR 120
           ++E+              A    A      ++   A      ++ L+P+  +    L+ +
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264

Query: 121 LKTQ 124
           L+  
Sbjct: 265 LEHH 268

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 47  HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL-- 104
               A    K +++ +A E    +    YN       RA     L +Y+ A  D+     
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 105 -IELNP-SSEVYQNL 117
            +      S  ++  
Sbjct: 66  KVNATKAKSADFEYY 80

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 17  LYRDGRYEEALGFYTEALSV-----AKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
              D +   A  +Y + + V     AK K + I  +   A  Y    D  KA     ++L
Sbjct: 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248

Query: 72  ELDYNHTGALMLRAQTLVTLKEYN 95
            LD  +  A+      L     ++
Sbjct: 249 ALDPTNKKAIDGLKMKLEHHHHHH 272

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 17  LYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            +     + A+  +  AL + K     ++   A  +N    Y KL  +  A +     L 
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           L  N        A   +  K    A+  ++  + ++P+       L
Sbjct: 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 4/115 (3%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
            A   +                    Y  ++      ++   L   +A        F   
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI---NGLEKSSDLLLCKADTLFVRSRFIDV 324

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
               T +LE+D  +     L   +L    E N      N L++ +P  +  +  +
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV 379

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             H   +   Y+ A+    + L    +      +H+  A  YL       A       L 
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGL---LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

Query: 73  LDYNHTGALMLRAQTL 88
           +  N   A  L  + L
Sbjct: 579 ISPNEIMASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 11/106 (10%), Positives = 35/106 (33%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           +A  L+   R+ + L   T+ L   +I    + ++    A   +  +  K       +++
Sbjct: 311 KADTLFVRSRFIDVLAITTKIL---EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                    +      + + + + A    ++   ++P     +   
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF 413

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L+  G   +      + +       +K          YL ++   +A    +    +D  
Sbjct: 349 LHESGEKNKLYLISNDLV---DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
              A +  A +     E++ A+        L   +   Y  L
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
                +  EA  +++++     +  Q        A  +    +  +A    T+   L   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                +      + L     A   +     L      +   L
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 3/100 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            AH    +G +++A+  YT A    ++ Q     +      +++L +   A E   S   
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAA---RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
           L       L           +  +A+      + L   ++
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 35/140 (25%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSV----------------------------------AK 38
           R         ++ A   Y EAL V                                  +K
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 39  IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98
                +              D  + AE+  S +      +  L+ +A TL     +   L
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 99  FDVNRLIELNPSS-EVYQNL 117
               +++E++P + +VY   
Sbjct: 326 AITTKILEIDPYNLDVYPLH 345

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALS-------------VAKIKQQKIALHSNRAACYLKL 57
           +++       G+  +A+ ++ + ++             V K  +    L +  A  Y K 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 58  HDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQN 116
            ++ KA      +L+   N+   L   A+  V   +   AL    ++++L          
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127

Query: 117 L 117
           L
Sbjct: 128 L 128

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 4/107 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRA-ACYLKLHDFKKAAEECTSVL 71
            A      G+ ++AL  Y + L   +++   +A +       YL     KK  E     L
Sbjct: 94  CAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118
                   A      + +    Y  A   + ++I   PS+E  + L 
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 5/118 (4%)

Query: 2   ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK 61
            S  +     E A    ++  Y++A  FY E L   +     +      A   +     K
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELL---QKAPNNVDCLEACAEMQVCRGQEK 105

Query: 62  KAAEECTSVLELDYNHTGALMLRAQTLV-TLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            A      +L+L+ ++  A +        T ++    L    + +             
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 57.6 bits (139), Expect = 1e-10
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 11/134 (8%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
             A   Y+ G YE+A   +        +            AC   +  +  A    +   
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALC---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
            +D          A+ L+   E   A   +    EL  +   +  L  R+ + L      
Sbjct: 83  VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML------ 136

Query: 132 ESEAEFEEEEEEEE 145
             EA   ++E + E
Sbjct: 137 --EAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 9/89 (10%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
           G      G         +I    +    + A    +   ++ A     ++  LD+  +  
Sbjct: 1   GPLGSGGGTIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            +        + +Y+ A+   +    ++ 
Sbjct: 58  FLGLGACRQAMGQYDLAIHSYSYGAVMDI 86

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 17  LYRDGRYEEALGFYTEALSVAK------IKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
            +++G ++ A  ++ +AL   K         +   L +N      KL  + +A +     
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           L L   +             +  + +A+   +  + L    +     L
Sbjct: 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             H   +  +Y EAL ++ +AL    +  Q  + +S     +  + +F+ A +   + L 
Sbjct: 242 LGHVCRKLKKYAEALDYHRQAL---VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSAL 98
           L  + T ++ +    +      + A 
Sbjct: 299 LRRDDTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 21  GRY-EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79
           G Y + +     E++      Q+ + +  + A  +    DFK   +  + V+E D  H  
Sbjct: 1   GSYNKPSETVIPESV---DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 80  ALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            L +   TLV L + N   +  ++L++L P +   +  +
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 3/131 (2%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
             H    +  +++A+  Y  A    ++ +            Y   ++ K A    +  L 
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAA---QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPE 132
           +       +           E+ +A       +E   +      +        +L  +  
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247

Query: 133 SEAEFEEEEEE 143
              ++ E  + 
Sbjct: 248 KLKKYAEALDY 258

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 6/109 (5%), Positives = 33/109 (30%), Gaps = 5/109 (4%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +  A + Y +  ++      +  +   +      +         ++L+   +       +
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVM---EKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

Query: 71  LELDYNHTGALMLRAQTLVTL-KEYNSALFDVNRLIELNPSS-EVYQNL 117
           ++L  ++  +        + +  +   A   +++   L  +    +   
Sbjct: 83  VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 11/103 (10%), Positives = 26/103 (25%), Gaps = 5/103 (4%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS-VLELDY 75
           L    +  E      + +    +              YL +    + A    S    L+ 
Sbjct: 66  LVELNKANELFYLSHKLV---DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

Query: 76  NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            +  A +    +     E++ A+       +L          +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 8/97 (8%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 22  RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81
           + E A  + ++A     +++            +    +  +A     +  +L       +
Sbjct: 106 KNEHARRYLSKAT---TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 82  MLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           +              A    ++ + + P    V   +
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 7   PANKIERAHQLYRD--GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAA 64
             + +E A +  +D     E+ L    E L      Q +      +        D+   A
Sbjct: 66  ETHSVEDAGRKQQDVQEEMEKTLQQMEEVL---GSAQVEAQALMLKGKALNVTPDYSPEA 122

Query: 65  EEC-TSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123
           E   +  ++L+     A     +      +  SA    +  +    +    QNL + +  
Sbjct: 123 EVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL-SMVLR 181

Query: 124 QLSLAPIPESEAEFEE 139
           QL      E      +
Sbjct: 182 QLQTDSGDEHSRHVMD 197

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 28/84 (33%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
              ++AL  Y +A  V +       LH NRA  +     + +A E  +    LD      
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

Query: 81  LMLRAQTLVTLKEYNSALFDVNRL 104
                Q L  L    S L    + 
Sbjct: 295 QQREQQLLEFLSRLTSLLESKGKT 318

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 2   ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK 61
            S  A     ++  +    G YE+A   +T+A+   +  ++    + N A     +++ +
Sbjct: 18  GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAI---EENKEDAIPYINFANLLSSVNELE 74

Query: 62  KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +A       LELD +   A        V  + Y  A     + +     + +++  L
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L      E AL FY +AL   ++       +      Y+    +K+A +     L     
Sbjct: 67  LSSVNELERALAFYDKAL---ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +     +    LV L++   AL  + R +ELN   +E     
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF 165

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 4/109 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L +  + + AL +   A+   ++ +           C        +A  +  +V E D  
Sbjct: 135 LVKLEQPKLALPYLQRAV---ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQ 124
           H  A      T    +    AL  +++ I++ P         +      
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.7 bits (125), Expect = 4e-08
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
                 Y+EA   + +AL   +   +   L        +KL   K A       +EL+ N
Sbjct: 101 YVVKEMYKEAKDMFEKAL---RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
            T A       L      + AL     + E +P  ++ + N 
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L  +G  +EAL  +       +          N    Y    + +KA E     +++  +
Sbjct: 169 LANEGMLDEALSQFAAVT---EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225

Query: 77  HTGALMLRAQTLVTLKEY 94
           H  AL  +         +
Sbjct: 226 HMLALHAKKLLGHHHHHH 243

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 2   ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDF 60
           ++ +   +++  A  L    + E  L    + L+       ++  L   R   Y  L   
Sbjct: 1   SNTSWRKSEV-LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR 59

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
             A  + +  L +  +           L     +++A    + ++EL+P+ +  + N 
Sbjct: 60  ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G    A   +++AL    I+     + +       +  +F  A E   SVLELD  
Sbjct: 53  YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           +  A + R   L        A  D+    + +P+       L
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 20/116 (17%), Positives = 26/116 (22%), Gaps = 8/116 (6%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R   LY  GR + A           +                 KL D K+A E      E
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFE 172

Query: 73  LDYNHTGALMLRAQTLVTLKE---YNSALFDVNRLIELNPS-SEVYQNLQARLKTQ 124
                     +    L  + E         D      L    SE    L     + 
Sbjct: 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 3/83 (3%)

Query: 16  QLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY 75
            +      E      T+      + +     +      YL L D   A       +  + 
Sbjct: 190 NISEQTLMERLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246

Query: 76  NHTGALMLRAQTLVTLKEYNSAL 98
           ++          L  L +    L
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDL 269

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 3/123 (2%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L + G ++ A   +   L   ++       H NR          K A ++  +  + D N
Sbjct: 87  LTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPESEAE 136
                +        L E  +         + +     +  ++  L        +   +A+
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203

Query: 137 FEE 139
             +
Sbjct: 204 ATD 206

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
           P   A     A  L + G+ +EAL  Y EA+   +I       +SN      ++ D + A
Sbjct: 40  PEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSNMGNTLKEMQDVQGA 96

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLK 122
            +  T  ++++     A    A           A+      ++L P   + Y NL   L+
Sbjct: 97  LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156

Query: 123 TQLSLAPIPES 133
                    E 
Sbjct: 157 IVCDWTDYDER 167

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.0 bits (134), Expect = 5e-09
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G  EEA+  Y +AL    +  +  A HSN A+   +    ++A       + +   
Sbjct: 19  KREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
              A      TL  +++   AL    R I++NP  ++ + NL +  K  
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 9/106 (8%), Positives = 23/106 (21%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +  +++   ++       L   +           
Sbjct: 112 HDGGKQALETVQRLLPVLCQAH---GLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           L      A+         L+     L  + +   L P       + 
Sbjct: 169 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 10/113 (8%), Positives = 26/113 (23%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +  Q++   ++ +     L   ++          
Sbjct: 248 NGGGKQALETVQRLLPVLCQAH---GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
           L      A+         L+     L  + +   L P       +     +  
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 357

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 7/97 (7%), Positives = 22/97 (22%), Gaps = 3/97 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +  +++   ++       L   ++          
Sbjct: 384 NGGGKQALETVQRLLPVLCQAH---GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
           L      A+         L+   + L   +  +    
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 10/106 (9%), Positives = 24/106 (22%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +  Q++   ++       L   ++          
Sbjct: 316 NGGGKQALETVQRLLPVLCQAH---GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           L      A+         L+     L  + +   L P       + 
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 10/113 (8%), Positives = 26/113 (23%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            +         +  L    +A     +  Q++   ++       L   ++          
Sbjct: 282 NSGGKQALETVQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
           L      A+         L+     L  + +   L P       +     +  
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQAL 391

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 9/113 (7%), Positives = 24/113 (21%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +  +++   ++       L   ++          
Sbjct: 350 HDGGKQALETVQRLLPVLCQAH---GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNLQARLKTQ 124
           L      A+         L+     L  + +   L P       +        
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPAL 459

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 9/115 (7%), Positives = 25/115 (21%), Gaps = 4/115 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
                        +  L    +A     +  +++   ++       L   ++        
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAH---GLTPEQVVAIASNGGGKQALETVQRLLPVLCQA 200

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
             L      A+         L+     L  + +   L P       +     +  
Sbjct: 201 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 10/114 (8%), Positives = 26/114 (22%), Gaps = 4/114 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                       +  L    +A     +  Q++   ++       L   ++         
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 269

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
            L      A+   +     L+     L  + +   L P       +     +  
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 323

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 3/114 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                       +  L    +A     +  Q++   ++       L   ++         
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAH---GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
            L      A+         L+   + L  + +   L P   V        K  L
Sbjct: 134 GLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 10/98 (10%), Positives = 24/98 (24%), Gaps = 4/98 (4%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
              +  L    +A     +  Q++   ++       L   ++          L      A
Sbjct: 188 ETVQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +         L+     L  + +   L P       + 
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 2/114 (1%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVA--KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                      EA+  +  AL+ A   +  +++   ++       L   ++         
Sbjct: 40  KIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH 99

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
            L      A+         L+     L  + +   L P   V        K  L
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 153

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 14/115 (12%), Positives = 24/115 (20%), Gaps = 4/115 (3%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
           P      +  A      G            L    +        +             +A
Sbjct: 20  PQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNL 117
           A       +    H G  +     L    +  +A     R  +L P    +   L
Sbjct: 77  AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
                 L     A+     + Q        A   L + D           L L   H  A
Sbjct: 3   ADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNL 117
           +    +   T + +  A   + +  +  P    +   L
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 11/104 (10%), Positives = 23/104 (22%), Gaps = 3/104 (2%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
           P  P          +   R+ EA     +A        +   +              + A
Sbjct: 54  PGHPEAVARLGRVRWTQQRHAEAAVLLQQAS---DAAPEHPGIALWLGHALEDAGQAEAA 110

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107
           A   T   +L                 L ++ +      ++   
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           LY   RYEEA     EA     +  ++  +  N     L++    +A E     L L+ N
Sbjct: 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
                +  A  L   +EY  A    +   +    ++      
Sbjct: 174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 2/115 (1%)

Query: 12  ERAHQLYRDGRYEEALGFYTEA-LSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
              H  +  G          +  L   K + +    +      YL+  + ++A       
Sbjct: 4   SHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA 63

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
           LE+D +   A    A    T  E   A  +  + +  +  ++ V  N    L  Q
Sbjct: 64  LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL--D 74
            Y  G Y E++  + +A+   ++  ++      +      L  +++A +    V+ +  D
Sbjct: 16  QYDAGNYTESIDLFEKAI---QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72

Query: 75  YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
             +      +A  L  ++             +L  
Sbjct: 73  EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 47  HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106
           +           ++ ++ +     ++LD   +   +++ + L  L+ Y  A+   N +I 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 107 LNP---SSEVYQNL 117
           +     + +V+   
Sbjct: 69  VIEDEYNKDVWAAK 82

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 15/92 (16%), Positives = 36/92 (39%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
           G   +A+ +Y +A++     +     +    + +  L +++KA     + ++   NH   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
            +  A  L  L  Y   +  + ++I      E
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 9/78 (11%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G Y +A       +   K      AL    A     L  +++  E    ++    +
Sbjct: 37  FRTLGEYRKAEAVLANGV---KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 77  HTG------ALMLRAQTL 88
                    A++  A  L
Sbjct: 94  DETIQSYKQAILFYADKL 111

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
                   E   +  ++G     + F   A+                     +  + + A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAI---LQDPGDAEAWQFLGITQAENENEQAA 118

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLK 122
                  LEL  N+  ALM  A +         A   +   I+ NP    + +N +    
Sbjct: 119 IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178

Query: 123 TQLSLAPIPESEAEFEE 139
               ++  P   +  E 
Sbjct: 179 LTRRMSKSPVDSSVLEG 195

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 4/114 (3%)

Query: 5   AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAA 64
            A  N I    +         +   Y       +   +            LK  D     
Sbjct: 29  MARRNWISENQEAQNQVTVSASEKGYYFHT---ENPFKDWPGAFEEGLKRLKEGDLPVTI 85

Query: 65  EECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
               + +  D     A      T    +   +A+  + R +EL P+  +    L
Sbjct: 86  LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
            +  G +  A+  +  AL+   ++ +  +L +   A        ++A E  T  LE+   
Sbjct: 223 FHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS---------EVYQNLQARLKTQLSL 127
              +      + + L  Y  A+ +    + L   S          +  N+ A L+  LSL
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 8/94 (8%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
              +   + A+      L   +++   +      A  Y      + A E   + ++ +  
Sbjct: 109 QAENENEQAAIVALQRCL---ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110
           +   +  +  +    +  + +  D + L  +   
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 2/98 (2%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
              E     Y EA            L +     +    +F +A +   + L +       
Sbjct: 191 SVLEGVKELYLEAAHQ-NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                 TL        A+    R +E+ P       NL
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                     ++ AL  ++       ++     +  N    Y  L +  +A +  T  + 
Sbjct: 12  EGVLAADKKDWKGALDAFS------AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNR-LIELNP-SSEVYQNLQARLKTQLSLA 128
            D +   A   R       ++Y+ A+ D+   LI+L       Y+ L  + K      
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 5e-08
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
             + GRY +A+    +           + +  +    Y+K     +  E     L    +
Sbjct: 18  HAKAGRYSQAVMLLEQVY---DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +     +   T V +++Y+ A+  + ++ E NP +  V   L
Sbjct: 75  NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL 116

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
             + G  +        +L         + + +     Y+++  +  A      V E +  
Sbjct: 52  YVKTGAVDRGTELLERSL---ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           +          L  L  ++ A+      + L P   +V++ +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
             +  +Y+ A+    +     +       +          L  F +A +     L L  N
Sbjct: 86  YVQVQKYDLAVPLLIKVA---EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
                   A +   +  +  AL    +  EL+ 
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 45  ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
             + ++   + K   + +A      V + D       +      V     +     + R 
Sbjct: 9   VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

Query: 105 IELNPS-SEVYQNL 117
           +   P   +V   L
Sbjct: 69  LADAPDNVKVATVL 82

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 15/135 (11%), Positives = 30/135 (22%), Gaps = 4/135 (2%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +E    + +     EA   +       +   ++     +      +      A       
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVC---QAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAP 129
             LD          A +       N+AL  +   +   P   ++             L  
Sbjct: 82  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141

Query: 130 IPESEAEFEEEEEEE 144
             E        E  E
Sbjct: 142 QSEDFFFAAPNEYRE 156

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
                 Y E       AL   ++      LH++    Y   +++  AA      +EL  +
Sbjct: 148 FAAPNEYRECRTLLHAAL---EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                     TL        AL   NR +++NP    V  N+
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 4/110 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
                 Y+ A      A+    ++     L +   A     +  ++A +     L+++  
Sbjct: 182 YNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQL 125
           +   +   A +   + +Y+ A   + R I +    +             +
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 4/98 (4%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
           G   +    Y      A                 LKL +  +AA    +V +       A
Sbjct: 1   GHMLQNNTDYPFE---ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                 T    ++   A+  +N    L+P    V+  L
Sbjct: 58  WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L    R +EAL  Y  AL    I    + +  N A  Y  +  +  AA++    + +   
Sbjct: 216 LANGNRPQEALDAYNRAL---DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 77  HTGALMLRAQTLVTLKEYN--SALFDVNRL 104
            T      ++             L  +NR 
Sbjct: 273 GTTPTGEASREATRSMWDFFRMLLNVMNRP 302

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 2/108 (1%)

Query: 19  RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT 78
           R  R  E++ ++ +AL+           + N+  C  K   F  A       L       
Sbjct: 89  RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 79  GALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQL 125
            A    A+T +   +   A +   +              L  ++   L
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 37  AKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNS 96
           A+   Q   + +  A  Y++  D+++A       L+ D  +  A ++RA+    LK  + 
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 97  ALFDVNRLIELNP-SSEVYQNLQARLKTQL 125
           A     + + + P S+E+  N    L  +L
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRL 90

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 9/113 (7%), Positives = 25/113 (22%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +   ++   ++       L   ++          
Sbjct: 198 NNGGKQALETVQRLLPVLCQAH---GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQ 124
           L  +   A+         L+     L  + +   L P       +     +  
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 9/100 (9%), Positives = 24/100 (24%), Gaps = 4/100 (4%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
              +  L    +A     +   ++   ++       L   ++          L  +   A
Sbjct: 308 ETVQRLLPVLCQAHG---LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQA 119
           +         L+     L  + +   L P       +   
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 404

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 9/113 (7%), Positives = 25/113 (22%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +   ++   ++       L   ++          
Sbjct: 232 HDGGKQALETMQRLLPVLCQAH---GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHG 288

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
           L  +   A+         L+     L  + +   L P       +     +  
Sbjct: 289 LTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 8/113 (7%), Positives = 24/113 (21%), Gaps = 4/113 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +   ++   ++       L   ++          
Sbjct: 503 NIGGKQALATVQRLLPVLCQAH---GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 559

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
           L  +   A+         L+     L  + +   L         +     +  
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQAL 612

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 9/114 (7%), Positives = 25/114 (21%), Gaps = 4/114 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                       +  L    +A     +   ++   ++       L   ++         
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAH---GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124
            L  +   A+         L+     L  + +   L P       +     +  
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 9/98 (9%), Positives = 22/98 (22%), Gaps = 3/98 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                       +  L    +A     +   ++   ++       L   ++         
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHG---LTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 694

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            L      A+         L+     L  + +   L P
Sbjct: 695 GLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 10/123 (8%), Positives = 27/123 (21%), Gaps = 4/123 (3%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           +P                   +  L    +A     +   ++   ++       L   ++
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHG---LTPDQVVAIASNGGGKQALETVQR 583

Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARL 121
                     L      A+         L+     L  + +   L P+      +     
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 643

Query: 122 KTQ 124
           +  
Sbjct: 644 QAL 646

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 2/98 (2%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKI--KQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                      EA+     AL+ A +     ++   ++       L   ++         
Sbjct: 160 KIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAH 219

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            L      A+         L+     L  + +   L P
Sbjct: 220 GLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 9/98 (9%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
                       +  L    +A     +   ++   ++       L   ++         
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAH---GLTPDQVVAIASNGG-KQALETVQRLLPVLCQAH 422

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            L  +   A+         L+     L  + +   L P
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTP 460

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 8/105 (7%), Positives = 23/105 (21%), Gaps = 4/105 (3%)

Query: 21  GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80
              +  L    +A     +   ++   ++       L   ++          L      A
Sbjct: 409 ETVQRLLPVLCQAH---GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

Query: 81  LMLRAQTLVTLKEYNSALFDVNRLIELN-PSSEVYQNLQARLKTQ 124
           +         L+     L  + +   L         +     +  
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQAL 510

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 8/97 (8%), Positives = 22/97 (22%), Gaps = 3/97 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                      +  L    +A     +   ++   ++       L   ++          
Sbjct: 605 NIGGKQALETVQRLLPVLCQAH---GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
           L  +   A+         L+     L  + +   L  
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 10/113 (8%), Positives = 28/113 (24%), Gaps = 4/113 (3%)

Query: 2   ASPAAPANKIERAHQLYRDGRYEEALGFYTEALS----VAKIKQQKIALHSNRAACYLKL 57
                    + +   +  +   ++AL      L        + Q ++   ++       L
Sbjct: 791 VLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQAL 850

Query: 58  HDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110
              ++          L  +   A+         L+     L  + +   L   
Sbjct: 851 ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLD 903

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                    + ++A   + E           + L + +AAC++    ++ A       L+
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMA---DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFD-VNRLIELNPSSEVYQNLQARLK 122
            D  H   L+        L +        +++L + + S    +  +A+  
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEN 279

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 3/98 (3%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E    + +     EA   +       + + ++     +      +      A        
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVC---QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
            LD          A +       N+AL  +   +   P
Sbjct: 79  MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 3/135 (2%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
            E   +  ++G    A+  +  A+   +   + +           +      A       
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAV---QQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130
           LEL  ++  ALM  A +         A   +   +   P+                L P 
Sbjct: 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184

Query: 131 PESEAEFEEEEEEEE 145
                    +    E
Sbjct: 185 KRILGSLLSDSLFLE 199

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
               G Y++A+  +T ALS   ++     L +   A     +  ++A       LEL   
Sbjct: 227 FNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKT 123
           +  +      + + L  +  A+      + +   S        A  + 
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 16  QLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY 75
            L  D  + E    +  A+ +         +       +    ++ KA +  T+ L +  
Sbjct: 190 SLLSDSLFLEVKELFLAAVRL-DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248

Query: 76  NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           N          TL    +   A+    R +EL P       NL
Sbjct: 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 4/89 (4%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           L    + EEA+  Y  AL    ++   I    N     + L   ++A E     L +   
Sbjct: 261 LANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

Query: 77  HTGALMLRAQTLVTLKEY-NSALFDVNRL 104
             G           +      AL  + + 
Sbjct: 318 SRGPRGEGGAMSENIWSTLRLALSMLGQS 346

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
            Y+ G Y+EA+ +Y +AL    +         N    Y K  D+ +A E     LELD N
Sbjct: 19  YYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
           +  A            +Y+ A+    + +EL+P+ +E  QNL
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
            Y+ G Y+EA+ +Y +AL    +  +      N    Y K  D+ +A E     LELD  
Sbjct: 11  YYKQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
              A            +Y+ A+    + +EL+P  +E + NL
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 45.5 bits (109), Expect = 2e-06
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
            Y+ G Y+EA+ +Y +AL    +  +      N    Y K  D+ +A E     LELD  
Sbjct: 45  YYKQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 77  HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
              A            +Y+ A+    + +EL+P S
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 15/113 (13%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
           LY  GRY+ AL  +  AL   K   Q        A   LKL     A E   +++     
Sbjct: 15  LYALGRYDAALTLFERAL---KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71

Query: 77  HTGALMLRAQTLVTL-----------KEYNSALFDVNRLIELNP-SSEVYQNL 117
           + G  M+ ++  V L                AL  +     +NP  + ++   
Sbjct: 72  YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 14/112 (12%)

Query: 17  LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-----------DFKKAAE 65
             + G    AL      ++      + +  +   +  Y+ L+             ++A  
Sbjct: 49  QLKLGLVNPALENGKTLVA---RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 66  ECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117
                  ++  +    + R      L E + A   + + + L  + E+   L
Sbjct: 106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 24  EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83
           +         L+        + L       Y +   F  A     + L+ D  ++ A   
Sbjct: 2   QAITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58

Query: 84  RAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQARLK 122
             +TL    +   A       +    S    +V + LQ  L+
Sbjct: 59  LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 23  YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82
             E + + T  +   + + +   +  +R      L D  +  E    +L  D  +  A  
Sbjct: 148 LHEEMNYITAII---EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204

Query: 83  LRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAPIPESEAEFE 138
            R   +   K +++ L  V++L++ +   + V+      +            E E +
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 11/172 (6%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           R   +       + L F  + L       +      +R     +   +    +    +L+
Sbjct: 172 RRVLVEWLRDPSQELEFIADIL---NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228

Query: 73  LD------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126
            D      +N    ++               +     +I+L P +E   N    +     
Sbjct: 229 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288

Query: 127 LAPIPESEAEFEEEEEEEEEEINQAGPYGIEEE--EGKSDEKEDAVAPVIKM 176
           L+  P    +  + +         A    I E+  E + D KED +   +++
Sbjct: 289 LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 17/136 (12%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS---- 69
           +++L      + A+    +A+   ++      L    A    K+ +  +   E       
Sbjct: 182 SYRLDNWPPSQNAIDPLRQAI---RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE 238

Query: 70  VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQLSLA 128
            LE     T  L   A+      E + A+  + + +E  P ++ ++  +    + ++   
Sbjct: 239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV 298

Query: 129 PIPESEAEFEEEEEEE 144
                   + + +  E
Sbjct: 299 MNLRENGMYGKRKLLE 314

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAE 65
             +L   G     + F+  A+       + ++ ++S     Y  L D+ KA +
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ 107

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 9  NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAEEC 67
          ++++   +L   G  E AL    E L   + +       +      Y KL D++KA    
Sbjct: 2  DQLKTIKELINQGDIENALQALEEFL---QTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58

Query: 68 TSVLELD 74
           S +EL+
Sbjct: 59 QSAIELN 65

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAE 65
            +L + G     + F+  A+ V     + ++ ++S     Y  LHD+ KA E
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAE 65
            +L + G     + F+  A+ V     + ++ ++S     Y  LHD+ KA E
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 46  LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI 105
                A  +LK  +  +A      ++E D ++ G      +    L   + A+    + I
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 106 ELNPS---SEVYQNLQARLKTQLSL 127
           E+       +    LQ        L
Sbjct: 69  EVAREEGTQKDLSELQDAKLKAEGL 93

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 20/138 (14%)

Query: 9   NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIAL---------HSNRAACYLKLHD 59
             +  A +    G Y+EA      A+ ++     + A          H+  A     L  
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 60  FKKAAEECTSVLELDYNHT-----------GALMLRAQTLVTLKEYNSALFDVNRLIELN 108
           F +A       L                   A+  RA  L  L     A+ +  +++E+ 
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 109 PSSEVYQNLQARLKTQLS 126
              +     + R+     
Sbjct: 133 EERKGETPGKERMMEVAI 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.81
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.81
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.7
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.69
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.69
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.68
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.66
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.59
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.56
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.51
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.5
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.49
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.48
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.47
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.44
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.43
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.42
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.36
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.31
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.3
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.28
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.28
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.23
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.23
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.2
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.2
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.17
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.16
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.11
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.1
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.1
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.1
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.1
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.1
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.06
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.06
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.02
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.97
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.95
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.94
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.8
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.59
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.58
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.51
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.43
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.37
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.34
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.21
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.14
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.1
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.09
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.03
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.59
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.44
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.34
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.14
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.13
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.89
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.38
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.0
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.83
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.75
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.25
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.63
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.39
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.88
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.8
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.82
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.39
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.29
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.66
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.32
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	88.65
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.53
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	86.88
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.65
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	84.06
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	82.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	82.03
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.6
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	80.21

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=6.4e-22  Score=157.37  Aligned_cols=117  Identities=25%  Similarity=0.474  Sum_probs=113.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|..++.++++|+.+|+.|+|.+|+.+|+++|.+   +|.++.+|+++|.||+++|++++|+.+|.++|+++|.++.+|+
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            6788999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ++|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999998887763

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.4e-19  Score=137.43  Aligned_cols=119  Identities=24%  Similarity=0.301  Sum_probs=114.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |+.+..++.+|..++..|+|.+|+..|.+++.+   +|.+..+++++|.||+++|+|++|+.+|.+++.++|.++.+|++
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            567889999999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELN------PSSEVYQNLQARLKTQL  125 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ld------P~~~~a~~~l~~l~~~l  125 (281)
                      +|.++..+|++++|+..|+++++++      |.+..++..+..+...+
T Consensus        78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999      99999999999887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.81  E-value=9.8e-19  Score=142.61  Aligned_cols=123  Identities=22%  Similarity=0.350  Sum_probs=113.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI---------------KQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---------------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      .+..++.+|+.++..|+|.+|+..|.++|.+.+.               +|....+|+++|.||+++|+|.+|+.+|.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678999999999999999999999999998431               5677899999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhcC
Q 023491           71 LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE-VYQNLQARLKTQLSLA  128 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~-~a~~~l~~l~~~l~~~  128 (281)
                      |.++|.++.+|+++|.+|..+|++++|+.+|++++.++|++. .+...+..+...+...
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 7888898888877644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1.9e-18  Score=142.53  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=105.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|..++..|+|++|+.+|.+++.+   +|.++.+|+++|.||+.+|+|++|+..|.+++.++|+++.+|+
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            6788999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      ++|.+|..+|++++|+.+|++++++.|+.+.
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~  139 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEKL  139 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH
Confidence            9999999999999999999999999998763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.77  E-value=9.3e-18  Score=133.02  Aligned_cols=112  Identities=15%  Similarity=0.241  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-------   77 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-------   77 (281)
                      ..+.+++++|+.+++.|+|++|+.+|+++|.+   +|.++.+|+++|.||+++|+|++|+.+|.++|+++|.+       
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            35778899999999999999999999999999   99999999999999999999999999999999998865       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      +.+|+++|.++..+|++.+|+.+|+++|.+.|+. .....+..
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l~~  124 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH-HHHHHHHH
Confidence            3689999999999999999999999999999864 44343333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=1.4e-18  Score=145.19  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc-------c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ-------K-----IALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~-------~-----~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      .+..++..|+.++..|+|++|+..|+++|.+   +|.       +     +.+|+|+|.|+.++|+|++|+.+|+++|++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999999   554       3     449999999999999999999999999999


Q ss_pred             -------cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           74 -------DYNHTGAL----MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        74 -------~p~~~~a~----~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                             +|++..+|    |++|.++..+|++++|+.+|+++++++|++..+...+..+++.+.
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                   99999999    999999999999999999999999999998777777777766654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=7.6e-18  Score=137.13  Aligned_cols=123  Identities=16%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++..|..++..|+|.+|+..|.+++..   +|.++.+++++|.+|+.+|+|++|+..|.+++.++|+++.+++
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            5778889999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++|.+|..+|++++|+.+|+++++++|+++....++.++...+...
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887777777777666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.76  E-value=7.7e-18  Score=134.93  Aligned_cols=121  Identities=15%  Similarity=0.163  Sum_probs=114.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++..|..++..|+|.+|+.+|.+++..   +|.+..+++++|.+|+++|+|++|+..|.+++.++|.++.+++
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   90 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF   90 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5778889999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|.+|..+|++++|+..|++++.++|+++....++.++...+.
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999998877777777766654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=5.8e-18  Score=137.81  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..++..|.+++..|+|++|+.+|.++|.+   +|.++.+|+++|.+|+++|++++|+..|.++++++|+++.+|++
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  104 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK  104 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence            455667889999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           84 RAQTLVTLKEYNSALFD-VNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~-~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|.+|..+|++.+|+.. +++|++++|+++.+..+++.|....
T Consensus       105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A          105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            99999999999887766 5999999999999999888876543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=1.5e-17  Score=135.72  Aligned_cols=120  Identities=20%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      ++.++..++.+|.+++..|+|.+|+.+|.+++.+   +|.+..+++++|.||+++|+|++|+.+|.+++.++|.++.+|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4567889999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEV--YQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~--a~~~l~~l~~~l  125 (281)
                      ++|.+|..+|++++|+.+|+++++++|++..  +...+..++..+
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  128 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI  128 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999877  444455555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.74  E-value=7.9e-17  Score=126.09  Aligned_cols=120  Identities=23%  Similarity=0.365  Sum_probs=113.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++..|..++..|+|.+|+.+|.+++..   +|.+..+++++|.|++.+|+|++|+..|.+++.++|.++.+++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   81 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   81 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence            5778999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPS-----SEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~-----~~~a~~~l~~l~~~l  125 (281)
                      ++|.++..+|++.+|+..|++++.++|+     +..+...+..++...
T Consensus        82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           82 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998     777888877776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=7.6e-16  Score=121.05  Aligned_cols=118  Identities=32%  Similarity=0.521  Sum_probs=111.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK---IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~---~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.++..++..|..++..|+|.+|+.+|.+++..   .|..   ..+++++|.+|+.+|+|++|+..|.+++.++|.+..
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            4678999999999999999999999999999998   7766   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +++++|.++..+|++++|+..|++++.++|++..++..+..+..
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988877753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=5.8e-16  Score=132.04  Aligned_cols=118  Identities=13%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSN----------------RAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~n----------------ra~~~~klg~y~~Ai~~~~   68 (281)
                      .++..++.+|..++..|+|.+|+.+|.+++..   +|.++.+++.                +|.+|+++|+|++|+..|.
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            36788999999999999999999999999999   9999999999                9999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.+....
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998876443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=4.5e-16  Score=119.90  Aligned_cols=120  Identities=25%  Similarity=0.424  Sum_probs=114.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..++..|..++..|+|.+|+.+|.+++..   .|.+..+++++|.+++.+|++++|+..|.+++.++|.+..+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   88 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT   88 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence            5678899999999999999999999999999998   8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++|.++..+|++.+|+..|++++.++|.+..++..++.+...+
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.69  E-value=1.5e-15  Score=115.83  Aligned_cols=121  Identities=21%  Similarity=0.322  Sum_probs=114.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..++..|..++..|+|..|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.++|.+..+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            456788999999999999999999999999998   88899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.++..+|++.+|+..|++++.++|.+..++..++.+...++.
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999988877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.69  E-value=4.1e-16  Score=143.32  Aligned_cols=122  Identities=26%  Similarity=0.423  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK---------------IALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~---------------~~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      |.++..++.+|..++..|+|.+|+.+|.+++.+   .|..               +.+++++|.||+++|+|++|+.+|.
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456788999999999999999999999999999   7766               7999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++|.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...++..
T Consensus       221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998877644

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=1.6e-15  Score=113.85  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++..|..++..|+|.+|+.+|.+++..   .|.+..+++++|.+++.+|++++|+..|.+++.++|.+..+++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4678999999999999999999999999999   8899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .++..+|++.+|+..|+++++++|++..++..++.+.+
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999988887754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.69  E-value=1.2e-15  Score=128.19  Aligned_cols=120  Identities=23%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI----------------ALHSNRAACYLKLHDFKKAAEECTS   69 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~----------------~a~~nra~~~~klg~y~~Ai~~~~~   69 (281)
                      .+..++..|..++..|+|.+|+.+|.+++.+   .|...                .+++++|.||+++|+|++|+.+|.+
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDF---FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4667889999999999999999999999998   44443                8999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           70 VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        70 al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++.++|.+..+++++|.+|..+|++++|+..|++++.++|++..++..++.+...+...
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=5.1e-16  Score=157.38  Aligned_cols=124  Identities=18%  Similarity=0.109  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++.++.++|.+++..|+|++|+.+|.++|.+   +|..+.+|+++|.+|+.+|++++|+..|+++|+++|+++.+|+
T Consensus        39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~  115 (723)
T 4gyw_A           39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS  115 (723)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4566666666666666666666666666666666   6666666666776666677777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      ++|.+|..+|++++|+..|++||+++|++..++.+++.+...+....
T Consensus       116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A          116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            77777777777777777777777777777777666666666655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=7.8e-16  Score=132.08  Aligned_cols=119  Identities=24%  Similarity=0.220  Sum_probs=82.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..++.+|.+++..|++.+|+..|.+++..   +|.++.+++++|.+++++|++++|+..|.++++++|+++.++++
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            456666777777777777777777777777776   67777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           84 RAQTLVTL-----------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        84 lg~a~~~~-----------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|.++..+           |++++|+..|+++++++|++..++.+++.+...+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~  131 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL  131 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            77777777           7777777777777777777776666666665544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.68  E-value=3.2e-16  Score=150.12  Aligned_cols=121  Identities=26%  Similarity=0.391  Sum_probs=109.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK---------------IALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~---------------~~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      |..+..++.+|+.++..|+|.+|+.+|.++|.+   .|..               ..+|+|+|.||+++|+|++|+.+|.
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            456778999999999999999999999999998   6655               7999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ++|.++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++..++..++.+...+..
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.67  E-value=2.3e-15  Score=116.49  Aligned_cols=116  Identities=15%  Similarity=0.196  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI---ALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGAL   81 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~---~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~   81 (281)
                      ..++..|.+++..|+|.+|+..|.+++..   .|...   .+++++|.+++++|+|++|+..|.+++..+|++   +.++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            35788999999999999999999999998   55555   899999999999999999999999999999999   8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.+|.++..+|++++|+..|++++...|++..+...+..+.....
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888888776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.66  E-value=4e-15  Score=126.84  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=108.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      +.+.++..++..|.+++..|+|.+|+..|.+++.+   .| .+..+++++|.|++.+|+|++|+..|.+++.++|.+..+
T Consensus         2 a~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   78 (228)
T 4i17_A            2 AQTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL---TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA   78 (228)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH
T ss_pred             ccccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH
Confidence            34678899999999999999999999999999999   77 788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHH
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV-------YQNLQARLKTQ  124 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~-------a~~~l~~l~~~  124 (281)
                      ++.+|.++..+|++.+|+..|++++.++|++..       +...++.+...
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~  129 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ  129 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999999994       45555555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=2.3e-15  Score=152.62  Aligned_cols=122  Identities=21%  Similarity=0.228  Sum_probs=116.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      ..|.++.++.++|.++...|+|++|+.+|+++|.+   +|..+.+++++|.+|+++|++++|+..|+++|+++|+++.+|
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            36899999999999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +++|.+|..+|++++|+.+|++|++++|++..++.+++.+...++
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g  125 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG  125 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999998877655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=1e-15  Score=144.15  Aligned_cols=121  Identities=15%  Similarity=0.103  Sum_probs=108.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGR-YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gd-y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.++.+++.+|.+++..|+ |.+|+.+|.++|.+   +|.+..+|++||.++..+|+|++|+.+|.++|.++|++..+|
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            68888899999999999996 99999999999998   888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +++|.++..+|++++|+.+|+++|+++|++..++.+++.+...+.
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999988888877743

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.66  E-value=9.6e-16  Score=120.44  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++.+|..++..|++.+|+..|.+++..   +|.+..+++++|.+++.+|++++|+..|.++++++|++..+++.+|.+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~   94 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   94 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45788999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      +..+|++++|+..|+++++++|.+..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999998653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.66  E-value=3.5e-15  Score=114.04  Aligned_cols=120  Identities=17%  Similarity=0.267  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-------   77 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-------   77 (281)
                      ..+..++..|..++..|+|..|+.+|.+++..   .|....+++++|.+++.+|+|++|+..|.+++.+.|.+       
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence            45778999999999999999999999999999   88899999999999999999999999999999998877       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ..+++++|.++..+|++.+|+..|++++.+.| +..+...+..+...+...
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999 688888888888776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.66  E-value=3.7e-15  Score=127.79  Aligned_cols=122  Identities=13%  Similarity=0.076  Sum_probs=106.0

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL-----------HDFKKAAEECTSV   70 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl-----------g~y~~Ai~~~~~a   70 (281)
                      .+|.++..++.+|.+++..|++++|+..|.+++.+   +|.+..+++++|.+++.+           |++++|+..|.++
T Consensus        34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  110 (217)
T 2pl2_A           34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA  110 (217)
T ss_dssp             TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence            36888888999999999999999999999999988   888888889999999888           8999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           71 LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ++++|+++.+++++|.++..+|++++|+..|+++++++ ++..++..++.+...++.
T Consensus       111 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~  166 (217)
T 2pl2_A          111 ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR  166 (217)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence            99999888888899999999999999999999988888 888888888877766543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=3.1e-16  Score=127.51  Aligned_cols=114  Identities=13%  Similarity=0.041  Sum_probs=104.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK   92 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g   92 (281)
                      +|..+...|+++.|+..|.+++..   .|..+.+++++|.+|+++|+|++|+..|.++|+++|+++.+|+++|.+|..+|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            577788889999999999999998   88899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           93 EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        93 ~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      ++++|+.+|+++++++|++..++..++.+...++...
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999887766543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.65  E-value=1.5e-14  Score=109.27  Aligned_cols=120  Identities=23%  Similarity=0.355  Sum_probs=111.2

Q ss_pred             CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAA-PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~-a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.. +..++..|..++..|++.+|+.+|.+++..   .|....+++++|.+++..|++++|+..|.+++.+.|.+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence            3444 788999999999999999999999999998   888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +.+|.++...|++.+|+..|++++.++|.+..+...++.+...+
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999888876543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.65  E-value=1.3e-14  Score=116.02  Aligned_cols=117  Identities=20%  Similarity=0.334  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++..|..++..|+|..|+..|.+++..   .|....+++++|.+++.+|+|.+|+..|.+++.++|.++.+++++|
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4677899999999999999999999999999   8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      .++..+|++.+|+..|++++.++|.+..++..+..+...+
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  128 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  128 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887777665444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.65  E-value=3.2e-15  Score=139.81  Aligned_cols=121  Identities=27%  Similarity=0.438  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +..++.+|..++..|+|.+|+.+|.++|.+.+             .++....+|+++|.||+++|+|++|+.+|.++|++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            56788999999999999999999999998321             26788999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+...+..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998887653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=2.3e-15  Score=141.72  Aligned_cols=124  Identities=13%  Similarity=0.067  Sum_probs=118.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-FKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.++.++..+|.++...|+|.+|+.+|.++|.+   +|.+..+|++||.+++.+|+ +++|+.+|.++|.++|++..+|
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            5677899999999999999999999999999999   99999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      +++|.++..+|++.+|+.+|+++|.++|++..++.+++.+...++...
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~  217 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  217 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999999999998877553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.63  E-value=3.2e-14  Score=117.02  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL------------   73 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i------------   73 (281)
                      ++.+++.+|.+++..|+|++|+..|+++|.+   +|.++.+++++|.+|+++|++++|+..+.+++..            
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            5666777777777777777777777777776   6666666666666666666666665555555544            


Q ss_pred             ----------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 ----------------------DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ----------------------~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                                            +|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...++.
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL  156 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence                                  466666777788888888888888888888888888888888888777766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=1.5e-14  Score=118.73  Aligned_cols=120  Identities=19%  Similarity=0.226  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAAC-YLKLHDF--KKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~-~~klg~y--~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.++..++..|.+++..|+|.+|+.+|.+++.+   .|.+..+++++|.+ ++..|++  ++|+..|.+++.++|.+..
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~  116 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT  116 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHH
Confidence            5889999999999999999999999999999999   88899999999999 8899999  9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +++.+|.++..+|++++|+..|++++.++|.+......+..+....
T Consensus       117 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~~  162 (177)
T 2e2e_A          117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAK  162 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876666666665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=4.1e-14  Score=116.35  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=78.5

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      .++.+|+++|.+|+.+|+|++|+..|+++++++|+++.+++.+|.+|..+|++.+|+..+.+++...|.+..+...++.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHhh
Q 023491          122 KTQLS  126 (281)
Q Consensus       122 ~~~l~  126 (281)
                      .....
T Consensus        83 ~~~~~   87 (184)
T 3vtx_A           83 NFMID   87 (184)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            66543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.61  E-value=3.7e-15  Score=111.10  Aligned_cols=106  Identities=12%  Similarity=0.175  Sum_probs=102.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGA   80 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a   80 (281)
                      +|.++..++..|.+++..|+|.+|+.+|.+++..   .|....+++++|.+++.+|+|++|+..|.+++.++|.  +..+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence            5788899999999999999999999999999999   8999999999999999999999999999999999999  9999


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 023491           81 LMLRAQTLVTL-KEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        81 ~~~lg~a~~~~-g~~~eAl~~~ekAL~ldP~~  111 (281)
                      ++.+|.++..+ |++++|+.+|++++...|.+
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999999 99999999999999999875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=1.9e-14  Score=122.66  Aligned_cols=119  Identities=8%  Similarity=0.001  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT------   78 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~------   78 (281)
                      .+...++.+|.+++..|+|.+|+..|.+++..   +|....+++++|.+|+.+|++++|+..|.+++.++|++.      
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            67788999999999999999999999999999   999999999999999999999999999999999999999      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhh
Q 023491           79 -GALMLRAQTLVTLKEYNSALFDVNRLIELNPS--SEVYQNLQARLKTQLS  126 (281)
Q Consensus        79 -~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~--~~~a~~~l~~l~~~l~  126 (281)
                       .+|+.+|.++..+|++++|+..|+++++++|+  +..++..++.+...++
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  167 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG  167 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence             67999999999999999999999999999999  8899988888876544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=1e-14  Score=130.54  Aligned_cols=105  Identities=25%  Similarity=0.431  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..++.+|..++..|+|.+|+.+|.+++..   +|.+..+++++|.+|+++|+|++|+.+|.+++.++|++..++++
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            678999999999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      +|.+|..+|++++|+..|+++++++|++
T Consensus        78 lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           78 LGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=1.3e-14  Score=123.61  Aligned_cols=118  Identities=17%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             CCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 023491            3 SPAAPANKIE----------------RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEE   66 (281)
Q Consensus         3 ~P~~a~~l~~----------------~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~   66 (281)
                      +|.++..++.                +|.+++..|+|++|+..|.+++.+   +|.+..+++++|.+|+.+|++++|+..
T Consensus        34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~  110 (208)
T 3urz_A           34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRM  110 (208)
T ss_dssp             CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4556667777                999999999999999999999999   999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHHhCCCC
Q 023491           67 CTSVLELDYNHTGALMLRAQTLVTL-----------------------------------KEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        67 ~~~al~i~p~~~~a~~~lg~a~~~~-----------------------------------g~~~eAl~~~ekAL~ldP~~  111 (281)
                      |+++++++|+++.+|+++|.+|+.+                                   |+|++|+.+|+++++++|+.
T Consensus       111 ~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          111 YEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            9999999999999988888876543                                   46889999999999999975


Q ss_pred             HHHHHHHHHHHHH
Q 023491          112 EVYQNLQARLKTQ  124 (281)
Q Consensus       112 ~~a~~~l~~l~~~  124 (281)
                      . +...+.++...
T Consensus       191 ~-~~~~l~~i~~~  202 (208)
T 3urz_A          191 E-AQKTLDKILRI  202 (208)
T ss_dssp             H-HHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHH
Confidence            4 45556655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.59  E-value=1.6e-15  Score=139.65  Aligned_cols=118  Identities=24%  Similarity=0.350  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI-----------------ALHSNRAACYLKLHDFKKAAEECT   68 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~-----------------~a~~nra~~~~klg~y~~Ai~~~~   68 (281)
                      .+..++.+|+.++..|+|.+|+.+|.+++.+   .|.+.                 .+|+++|.||+++|+|++|+.+|.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5678899999999999999999999999998   66665                 489999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|.++|.+..+|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...+.
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888855443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.57  E-value=8.8e-15  Score=121.96  Aligned_cols=106  Identities=11%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491           17 LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF----------KKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus        17 ~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y----------~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      .-+.+.|++|+..|.+++.+   +|.++.+|+++|.++..++++          ++|+..|+++|+++|++..+|+++|+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34567899999999999999   999999999999999999876          59999999999999999999999999


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           87 TLVTLK-----------EYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        87 a~~~~g-----------~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|..+|           ++++|+.+|++|++++|++..++..+..+.+..
T Consensus        89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            999885           899999999999999999999999888776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.56  E-value=1.8e-14  Score=111.40  Aligned_cols=108  Identities=15%  Similarity=0.153  Sum_probs=93.8

Q ss_pred             HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491           19 RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL   98 (281)
Q Consensus        19 ~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl   98 (281)
                      ..|+|++|+.+|.+++.+...+|....+++++|.+|+.+|+|++|+..|.++++++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999999721138889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           99 FDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        99 ~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ..|++++.+.|+++.+......+.....
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999988877766655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.55  E-value=7.6e-14  Score=118.74  Aligned_cols=116  Identities=24%  Similarity=0.332  Sum_probs=108.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|+|.+|+..|.+++..   .|.+..+++++|.+++++|++++|+..|.+++.++|.++.+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  211 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI  211 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence            4667788999999999999999999999999999   8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELN------PSSEVYQNLQARL  121 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ld------P~~~~a~~~l~~l  121 (281)
                      .+|.++..+|++.+|+..|+++++++      |.+..++..+..+
T Consensus       212 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          212 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999999      9888888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=5.4e-13  Score=107.31  Aligned_cols=121  Identities=11%  Similarity=0.109  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|.+++..|++.+|+.+|.+++..   .|....+++++|.+++..|++++|+..|.+++.+.|.+..+++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  114 (186)
T 3as5_A           38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF  114 (186)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHH
Confidence            4678889999999999999999999999999998   8888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|.++...|++++|+..|++++.+.|.+..+...++.+...++
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999988888888876654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.54  E-value=1.9e-13  Score=114.45  Aligned_cols=103  Identities=11%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-------   78 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-------   78 (281)
                      ++..++..|.+++..|+|.+|+..|.+++.+   +|....+++++|.+|+.+|+|++|+..|.+++.+.|.+.       
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  112 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL  112 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHh
Confidence            4555666666666666666666666666665   566666666666666666666666666666666555444       


Q ss_pred             ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           79 ---------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        79 ---------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                               .+++++|.++..+|++++|+..|++++.++|++
T Consensus       113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                     566666666666666666666666666666644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.53  E-value=1.5e-13  Score=119.68  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK---IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH--   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~---~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~--   77 (281)
                      +|.++..++.+|..++..|+|.+|+..|.+++..   .|..   ..+++++|.||+++|+|.+|+..|.+++.+.|++  
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4778999999999999999999999999999998   6665   9999999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           78 -TGALMLRAQTLVT--------LKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        78 -~~a~~~lg~a~~~--------~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                       ..+++.+|.+++.        +|++.+|+..|++++.+.|++..+.
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence             6799999999999        9999999999999999999986665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=2.7e-13  Score=116.82  Aligned_cols=114  Identities=18%  Similarity=0.063  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..++.+|.+++..|+|.+|+.+|.+++..   +|....+++++|.+|+.+|++++|+..|.+++.++|.+..+++.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  116 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  116 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHH
Confidence            567889999999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      +|.++..+|++++|+..|++++.++|.+.....+...
T Consensus       117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A          117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999865554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=1.1e-12  Score=110.94  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=100.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|++.+|+..|.+++..   .|....+++++|.+++.+|++++|+..|.+++.+.|.+..+++
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  129 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALEL---DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY  129 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5677888888888888888888888888888887   7778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .+|.++..+|++++|+..|++++.+.|.+..+...++.+...++.
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence            888888888888888888888888888888877777777665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.51  E-value=8.4e-13  Score=100.31  Aligned_cols=114  Identities=22%  Similarity=0.300  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++..|..++..|++.+|+..|.+++..   .|....+++++|.+++..|++++|+..|.+++.+.|.+..+++.+|.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            46788999999999999999999999998   888899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +...|++++|+..|++++.+.|.+..+...++.+...
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999998888877776644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.51  E-value=3.2e-13  Score=117.68  Aligned_cols=124  Identities=18%  Similarity=0.172  Sum_probs=110.2

Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q 023491            3 SPAA---PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK--------LHDFKKAAEECTSVL   71 (281)
Q Consensus         3 ~P~~---a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k--------lg~y~~Ai~~~~~al   71 (281)
                      .|.+   +.+++.+|.+++..|+|.+|+..|.+++...|.++....+++++|.|++.        +|++++|+..|.+++
T Consensus        45 ~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l  124 (261)
T 3qky_A           45 GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI  124 (261)
T ss_dssp             CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            4556   89999999999999999999999999999955555778899999999999        999999999999999


Q ss_pred             HhcCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhh
Q 023491           72 ELDYNHTGAL-----------------MLRAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQARLKTQLS  126 (281)
Q Consensus        72 ~i~p~~~~a~-----------------~~lg~a~~~~g~~~eAl~~~ekAL~ldP~---~~~a~~~l~~l~~~l~  126 (281)
                      ...|++..+.                 +.+|.+|+.+|+|.+|+..|++++...|+   ...+..+++.+...++
T Consensus       125 ~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          125 DRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            9999886655                 99999999999999999999999999998   4567777777666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.51  E-value=4.6e-13  Score=130.17  Aligned_cols=120  Identities=12%  Similarity=0.025  Sum_probs=114.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|++|+.+|.+++.+   +|.+..+++++|.+|+.+|++++|+..|.++++++|.+..+++
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   95 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL   95 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            5889999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++|.+|..+|++++|+..|+++++++|++..++..++.+...+
T Consensus        96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998888887766

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=1.3e-12  Score=110.48  Aligned_cols=123  Identities=17%  Similarity=0.074  Sum_probs=112.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|.+++..|++.+|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.+.|.+..+++
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  163 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF  163 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence            4678889999999999999999999999999998   8888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      .+|.++...|++++|+..|++++.++|.+..++..++.+...++..
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  209 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR  209 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH
Confidence            9999999999999999999999999999999988888887766543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=6.3e-13  Score=119.61  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=115.6

Q ss_pred             CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            3 SPA--APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         3 ~P~--~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      +|.  ++..+..+|.+++..|++++|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.++|.+..+
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  287 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  287 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            355  7889999999999999999999999999999   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhhcC
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSS-----------EVYQNLQARLKTQLSLA  128 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~-----------~~a~~~l~~l~~~l~~~  128 (281)
                      ++++|.++..+|++.+|+..|++++.+.|.+           ..++..++.+...++..
T Consensus       288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            9999999999999999999999999999988           78888898888877654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.50  E-value=3.6e-14  Score=116.72  Aligned_cols=100  Identities=8%  Similarity=-0.045  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491           26 ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        26 Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL  105 (281)
                      +-..|.+++.+   +|.+..+++++|.+++++|+|++|+..|.+++.++|.++.+|+++|.+|..+|+|++|+.+|++++
T Consensus        21 ~~~~l~~al~l---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           21 SGATLKDINAI---PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             TSCCTGGGCCS---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            33456777777   999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhhcC
Q 023491          106 ELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus       106 ~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      .++|+++.++.+++.+...++..
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCH
Confidence            99999999999999998877643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.50  E-value=1.1e-13  Score=138.82  Aligned_cols=120  Identities=14%  Similarity=-0.022  Sum_probs=100.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|++|+..|.+++..   +|.+..+++++|.+|+.+|+|++|+..|.++++++|+++.+|+
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~  505 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL  505 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            4777888888888888888888888888888888   8888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|.++..+|++++ +..|+++++++|++..++.+++.+...++
T Consensus       506 ~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g  548 (681)
T 2pzi_A          506 ALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG  548 (681)
T ss_dssp             HHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC
Confidence            88888888888888 88888888888888888888877776654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=2.9e-13  Score=107.03  Aligned_cols=89  Identities=19%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      +|..+.++.++|.+|++.|+|++|+..|.++|+++|.++.+|+++|.+|..+|++.+|+.+|+++++++|++..++..++
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcC
Q 023491          120 RLKTQLSLA  128 (281)
Q Consensus       120 ~l~~~l~~~  128 (281)
                      .+...++..
T Consensus        89 ~~~~~~~~~   97 (126)
T 4gco_A           89 ACLVAMREW   97 (126)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHCCCH
Confidence            998776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.49  E-value=4.7e-13  Score=121.20  Aligned_cols=121  Identities=15%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            3 SPA--APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         3 ~P~--~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      +|.  ++..+..+|.+++..|+|.+|+.+|.+++..   .|.+..+++++|.+|+.+|++++|+..|.+++.++|.++.+
T Consensus       207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  283 (365)
T 4eqf_A          207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS  283 (365)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence            355  7889999999999999999999999999998   88899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSS------------EVYQNLQARLKTQLS  126 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------------~~a~~~l~~l~~~l~  126 (281)
                      ++++|.+|..+|++.+|+..|++++.+.|..            ..++..+..+...++
T Consensus       284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999998873            456666666665554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.5e-12  Score=110.71  Aligned_cols=121  Identities=16%  Similarity=0.214  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----------------------cCcccHHHHHHHHHHHHHcCCHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----------------------IKQQKIALHSNRAACYLKLHDFKKA   63 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----------------------~~p~~~~a~~nra~~~~klg~y~~A   63 (281)
                      +..+...|.+++..|++.+|+..|.+++.+.+                       ..|....+++++|.+++..|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            68889999999999999999999999999311                       2778899999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           64 AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        64 i~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +..|.+++.++|.++.+++.+|.++..+|++.+|+..|++++.++|++..++..++.+...++.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999988877643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.48  E-value=4.4e-13  Score=115.12  Aligned_cols=114  Identities=17%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---AL   81 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~   81 (281)
                      +++..++.+|..++..|+|.+|+..|.+++...|..+....+++++|.+|+++|+|++|+..|.++++.+|++..   ++
T Consensus         2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            367899999999999999999999999999984444445689999999999999999999999999999998864   89


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           82 MLRAQTLVT------------------LKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        82 ~~lg~a~~~------------------~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      |.+|.+++.                  .|++++|+..|++++...|++..+...+
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999999987                  5799999999999999999987665443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=1e-12  Score=110.02  Aligned_cols=114  Identities=12%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..++..|..++..|+|.+|+..|.+++.     + .+.+++++|.+|+.+|+|++|+..|.+++.++|.++.+++++|.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            45678999999999999999999999853     2 57899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSE----------------VYQNLQARLKTQLS  126 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~----------------~a~~~l~~l~~~l~  126 (281)
                      ++..+|++.+|+..|++++.+.|.+.                .++.+++.+...++
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  135 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE  135 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence            99999999999999999999998876                77787777766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.48  E-value=4.2e-14  Score=136.31  Aligned_cols=117  Identities=20%  Similarity=0.328  Sum_probs=109.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      ..+..++.+|..++..|+|++|+.+|++++.+   +|..+.+++++|.+|+++|+|++|+..|.++++++|.++.+++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   80 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   80 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34556778899999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |.+|..+|++++|+..|+++++++|++..++.+++.+...
T Consensus        81 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  120 (477)
T 1wao_1           81 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  120 (477)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888887433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.47  E-value=1.8e-12  Score=98.42  Aligned_cols=106  Identities=25%  Similarity=0.400  Sum_probs=100.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|..++..|++.+|+.+|.+++..   .|....+++++|.+++..|++++|+..|.+++.+.|.+..+++
T Consensus        31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  107 (136)
T 2fo7_A           31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY  107 (136)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence            4678888999999999999999999999999998   8888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      .+|.++...|++.+|+..|++++.++|.+
T Consensus       108 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          108 NLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999863

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.47  E-value=2.3e-12  Score=116.65  Aligned_cols=126  Identities=11%  Similarity=0.042  Sum_probs=104.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----------------------------------------cCc
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----------------------------------------IKQ   41 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----------------------------------------~~p   41 (281)
                      +|.++..+..+|.++...|+|.+|+.+|.+++.+.+                                         ..|
T Consensus       129 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  208 (365)
T 4eqf_A          129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG  208 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence            466777777888888888888877777777776532                                         123


Q ss_pred             c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           42 Q--KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        42 ~--~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .  ++.+++++|.+|+.+|++++|+..|.+++.++|.++.+|+++|.++..+|++.+|+..|+++++++|++..++..++
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  288 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG  288 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3  67888999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhcC
Q 023491          120 RLKTQLSLA  128 (281)
Q Consensus       120 ~l~~~l~~~  128 (281)
                      .+...++..
T Consensus       289 ~~~~~~g~~  297 (365)
T 4eqf_A          289 ISCINLGAY  297 (365)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHCCCH
Confidence            888776544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=1.6e-12  Score=108.12  Aligned_cols=118  Identities=14%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++..|..++..|++.+|+..|.+++..   .|....+++.+|.+++.+|++++|+..|.+++.++|.+..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   80 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN   80 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence            3445555566666666666666666666666655   5555555666666666666666666666666666665555666


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Q 023491           83 LRAQTLVTL-KEYNSALFDVNRLIE--LNPSSEVYQNLQARLKT  123 (281)
Q Consensus        83 ~lg~a~~~~-g~~~eAl~~~ekAL~--ldP~~~~a~~~l~~l~~  123 (281)
                      .+|.++... |++.+|+..|++++.  ..|.+..++..++.+..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            666666666 666666666666655  34444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=8.7e-14  Score=139.51  Aligned_cols=116  Identities=14%  Similarity=-0.041  Sum_probs=112.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|++|+..|.+++.+   +|.+..+++++|.+|+++|+|++ +..|+++++++|++..+|+
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~  538 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF  538 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence            5889999999999999999999999999999999   99999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ++|.++..+|++++|+.+|+++++++|++..++.+++.+.
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=2.2e-12  Score=113.39  Aligned_cols=122  Identities=11%  Similarity=0.120  Sum_probs=114.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|++++|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.+.|.+..+++
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  244 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY  244 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            4678899999999999999999999999999999   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhhc
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPS------------SEVYQNLQARLKTQLSL  127 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~------------~~~a~~~l~~l~~~l~~  127 (281)
                      .+|.++..+|++++|+..|++++.+.|.            +..++..++.+...++.
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  301 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR  301 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999            78888888888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=2.4e-12  Score=110.07  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE--LDYNHTGA   80 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~--i~p~~~~a   80 (281)
                      +|.++..+...|.+++..|++.+|+.+|.+++..   .|....+++++|.+|+.+|++++|+..|.+++.  ..|.+..+
T Consensus        67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  143 (252)
T 2ho1_A           67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS---DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV  143 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH
Confidence            3556667777777777777777777777777776   666677777777777777777777777777777  66666677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++.+|.++...|++++|+..|++++.+.|.+..++..++.+...+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            777777777777777777777777777777766666666655443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=8.4e-13  Score=120.72  Aligned_cols=121  Identities=17%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|++++|+..|.+++..   +|....+++++|.++.+.|++++|+..|.+++.++|.+..+++
T Consensus       233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  309 (388)
T 1w3b_A          233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence            4677788888888888888888888888888887   7777888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|.++...|++++|+..|+++++++|++..++..++.+...++
T Consensus       310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  353 (388)
T 1w3b_A          310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            88888888888888888888888888888777777776655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=3e-12  Score=106.51  Aligned_cols=118  Identities=14%  Similarity=0.017  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL-HDFKKAAEECTSVLE--LDYNHTGA   80 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl-g~y~~Ai~~~~~al~--i~p~~~~a   80 (281)
                      |.++..+...|.+++..|++.+|+.+|.+++..   .|....+++++|.+++.+ |++++|+..|.+++.  ..|....+
T Consensus        39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  115 (225)
T 2vq2_A           39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI---KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA  115 (225)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred             ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHH
Confidence            445556666666666666666666666666665   555566666666666666 666666666666665  44444556


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ++.+|.++...|++++|+..|++++.+.|.+..++..++.+...
T Consensus       116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  159 (225)
T 2vq2_A          116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML  159 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            66666666666666666666666666666665555555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=9.5e-13  Score=120.35  Aligned_cols=116  Identities=20%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|..++..|++++|+.+|.+++.+   +|....+++++|.++++.|++++|+..|.+++.++|++..+++
T Consensus        63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  139 (388)
T 1w3b_A           63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS  139 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            3555566666666666666666666666666665   5555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      .+|.++..+|++++|+..|++++.++|++..++..++.+
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (388)
T 1w3b_A          140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV  178 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            555555555555555555555555555555555544444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=7.2e-13  Score=116.74  Aligned_cols=120  Identities=14%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI------KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN   76 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~   76 (281)
                      +|.++..+...|.+++..|++.+|+..|.+++...+.      .+....+++++|.+++.+|++++|+..|.+++.++|.
T Consensus       189 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            4667777777777777777777777777777776320      1445667777777777778888888888877777777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +..+++.+|.++..+|++.+|+..|+++++++|++..++..++.+.
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            7777777888887788888888888888777777777777777655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=4.3e-13  Score=115.86  Aligned_cols=117  Identities=12%  Similarity=0.008  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|.+|+..|.+++...........+++++|.+++.+|++++|+..|.+++.++|.+..+++
T Consensus        33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            34555556666666666666666666666666531111122445666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .+|.++..+|++++|+..|++++.++|.+..++..++
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            6666666666666666666666666666666666555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.46  E-value=1.5e-12  Score=116.55  Aligned_cols=122  Identities=14%  Similarity=0.091  Sum_probs=108.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHH-----------------
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEE-----------------   66 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~-----------------   66 (281)
                      |.++..++..|..++..|++++|+..|.+++..   +|.+..+++++|.+++.+|++++|+..                 
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            567788899999999999999999999999999   999999999999999999999887655                 


Q ss_pred             -----------------HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhc
Q 023491           67 -----------------CTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS--EVYQNLQARLKTQLSL  127 (281)
Q Consensus        67 -----------------~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~--~~a~~~l~~l~~~l~~  127 (281)
                                       |.+++..+|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..+..+...++.
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence                             445577789999999999999999999999999999999999998  8888888888877764


Q ss_pred             C
Q 023491          128 A  128 (281)
Q Consensus       128 ~  128 (281)
                      .
T Consensus       271 ~  271 (287)
T 3qou_A          271 G  271 (287)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=4.9e-13  Score=128.27  Aligned_cols=117  Identities=15%  Similarity=0.057  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 023491            7 PANKIERAHQLYRD---------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL--------HDFKKAAEECTS   69 (281)
Q Consensus         7 a~~l~~~G~~~~~~---------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl--------g~y~~Ai~~~~~   69 (281)
                      +..+..+|.+++..         |+|++|+.+|.+++.+   +|.+..+++++|.+|+.+        |+|++|+..|.+
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            34555555555555         5555555555555555   556666666666666666        666666666666


Q ss_pred             HHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           70 VLELDY---NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        70 al~i~p---~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++.++|   .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            666666   666666666666666666666666666666666666666666666655554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=5.5e-13  Score=127.90  Aligned_cols=99  Identities=19%  Similarity=0.090  Sum_probs=93.6

Q ss_pred             CCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRD--------GRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~--------gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      +|.++..++.+|.+++..        |+|++|+.+|.+++.+   +|   ..+.+++++|.+|+.+|+|++|+..|.+++
T Consensus       209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            588999999999999999        9999999999999999   88   899999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      +++|++..+++.+|.++..+|++++|+..+.+.
T Consensus       286 ~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999887644

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=2e-12  Score=103.95  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++..|..++..|++.+|+..|.+++..   .|....+++.+|.+++..|++++|+..|.+++.+.|.+..+++.+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   83 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4567889999999999999999999999998   8889999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .++...|++.+|+..|++++.+.|.+..+...++.+...++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  124 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG  124 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999888887776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=3.3e-12  Score=109.26  Aligned_cols=121  Identities=20%  Similarity=0.145  Sum_probs=112.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALS--VAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~--~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      +|.++..+...|.+++..|++.+|+.+|.+++.  .   .|....+++++|.+++.+|++++|+..|.+++.+.|.+..+
T Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  177 (252)
T 2ho1_A          101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL---YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV  177 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH
Confidence            467888999999999999999999999999998  5   88889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++.+|.++..+|++.+|+..|++++.+.|.+..+...+..+...++
T Consensus       178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  223 (252)
T 2ho1_A          178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE  223 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999988888887766543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=1.4e-12  Score=115.75  Aligned_cols=112  Identities=20%  Similarity=0.287  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      +++.++..|..++..|+|.+|+.+|.+++..   +|....+++++|.+++.+|++++|+..|.+++.++|.+..+++.+|
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            5788999999999999999999999999998   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNP---SSEVYQNLQAR  120 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP---~~~~a~~~l~~  120 (281)
                      .++..+|++++|+..|++++.++|   .+..+...+..
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            999999999999999999999999   88877776643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.2e-14  Score=105.27  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------TG   79 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------~~   79 (281)
                      ++..++..|.+++..|+|.+|+..|.+++.+   +|.+..+++++|.|++++|+|++|+..|.+++.++|++      ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            5677888888888888888888888888888   88888888888888888888888888888888888887      78


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNR  103 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ek  103 (281)
                      +++++|.++..+|++..|+..|++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHH
Confidence            888888888888887777665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=3.5e-12  Score=113.15  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI----ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~----~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..|..++..|++.+|+..|.+++..   .|.+.    .++..+|.+++++|++++|+..|.+++.++|.++.+++.+|
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  313 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            345699999999999999999999998   66654    45778999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .++..+|++++|+..|+++++++|++..++..+..+...++.
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.45  E-value=1.7e-12  Score=120.20  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=108.3

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .+|.++..++.+|..++..|+|.+|+.+|.+++..   +|.+..+++++|.+|+.+|++++|+..|.+++.++|.+..++
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   97 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR   97 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            46889999999999999999999999999999998   899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSE---VYQNLQAR  120 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~---~a~~~l~~  120 (281)
                      +.+|.+|..+|++++|+..|++++.++|.+.   .++..+..
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999988   66655533

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.44  E-value=2.4e-12  Score=113.30  Aligned_cols=121  Identities=9%  Similarity=0.028  Sum_probs=107.0

Q ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDG-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.++..++..|.+++..| ++.+|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.+.|.+..++
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  162 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM  162 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT---CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence            5778888899999999999 899999999999988   888888899999999999999999999999999999988899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +.+|.++...|++++|+..|++++.++|.+..+...++.+...++
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999888888887766544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.43  E-value=1.4e-12  Score=107.62  Aligned_cols=123  Identities=14%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHH-----------------
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAE-----------------   65 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~-----------------   65 (281)
                      ||...+.++.+|..++..|++.+|+..|.+++..   +|.+..+++++|.+++.+|++++|+.                 
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   78 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL   78 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence            3444455666666666667777777666666666   66666666666666666666665554                 


Q ss_pred             -----------------HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhh
Q 023491           66 -----------------ECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS--EVYQNLQARLKTQLS  126 (281)
Q Consensus        66 -----------------~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~--~~a~~~l~~l~~~l~  126 (281)
                                       .|.+++.++|+++.+++.+|.++...|++++|+..|+++++++|+.  ..++..++.+...++
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence                             4455566678888899999999999999999999999999999875  557888887777665


Q ss_pred             cC
Q 023491          127 LA  128 (281)
Q Consensus       127 ~~  128 (281)
                      ..
T Consensus       159 ~~  160 (176)
T 2r5s_A          159 QG  160 (176)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.42  E-value=3.1e-12  Score=110.42  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+..+|.+++..|++.+|+..|.+++..   +|....+++++|.+|+.+|++++|+..|.+++.++|.++.+++++|.
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  150 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence            566899999999999999999999999999   99999999999999999999999999999999999999999999996


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +.+..+++++|+..|+++++++|.+..+...++.+...+..
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            66666799999999999999999999999999998888754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.42  E-value=7e-13  Score=107.51  Aligned_cols=100  Identities=9%  Similarity=-0.000  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491           26 ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        26 Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL  105 (281)
                      +-..|.+++.+   +|.+..+++++|.+++..|+|.+|+..|.+++.++|.++.+|+++|.++..+|++++|+.+|++++
T Consensus         6 ~~~~~~~al~~---~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            6 GGGTIAMLNEI---SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             CCCSHHHHTTC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcC---CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34568888888   999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhhcC
Q 023491          106 ELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus       106 ~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      .++|++..++..++.+...++..
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~  105 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGEL  105 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCH
Confidence            99999999999999888766543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=4.7e-12  Score=108.62  Aligned_cols=122  Identities=8%  Similarity=0.019  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH------------------cCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK------------------LHDFKKAAEE   66 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k------------------lg~y~~Ai~~   66 (281)
                      ....+++.+|.+++..|+|.+|+..|.+++...|.++....+++.+|.+++.                  +|++++|+..
T Consensus        39 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           39 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            3467899999999999999999999999999944333344689999999987                  5799999999


Q ss_pred             HHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhh
Q 023491           67 CTSVLELDYNHTGAL-----------------MLRAQTLVTLKEYNSALFDVNRLIELNPSSE---VYQNLQARLKTQLS  126 (281)
Q Consensus        67 ~~~al~i~p~~~~a~-----------------~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~---~a~~~l~~l~~~l~  126 (281)
                      |.+++...|++..++                 +.+|.+|+..|++.+|+..|+++++..|+++   .++..++.+...++
T Consensus       119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  198 (225)
T 2yhc_A          119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQ  198 (225)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcC
Confidence            999999999987544                 6889999999999999999999999999987   45666666655543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=1.7e-11  Score=110.23  Aligned_cols=125  Identities=14%  Similarity=0.078  Sum_probs=94.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------------------------------
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------------------------------   38 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------------------------------   38 (281)
                      +|.++..+...|.+++..|++.+|+..|.+++...+                                            
T Consensus       128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  207 (368)
T 1fch_A          128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  207 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            355666677777777777777766666666655422                                            


Q ss_pred             --cCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           39 --IKQQ--KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        39 --~~p~--~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                        ..|.  .+.+++++|.+|+..|++++|+..|.+++.++|.++.+++.+|.++..+|++.+|+..|++++.++|.+..+
T Consensus       208 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  287 (368)
T 1fch_A          208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  287 (368)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence              1233  577788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhc
Q 023491          115 QNLQARLKTQLSL  127 (281)
Q Consensus       115 ~~~l~~l~~~l~~  127 (281)
                      +..++.+...++.
T Consensus       288 ~~~l~~~~~~~g~  300 (368)
T 1fch_A          288 RYNLGISCINLGA  300 (368)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCC
Confidence            8888777766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.40  E-value=5.4e-12  Score=96.48  Aligned_cols=95  Identities=13%  Similarity=0.031  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           25 EALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        25 eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      .|+..|.+++..   +|.+..+++++|.+|+.+|+|++|+..|.+++.++|.+..+|+++|.++..+|++.+|+..|+++
T Consensus         3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            578999999998   99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCC--CHHHHHHHHHHH
Q 023491          105 IELNPS--SEVYQNLQARLK  122 (281)
Q Consensus       105 L~ldP~--~~~a~~~l~~l~  122 (281)
                      +.+.|.  +......+..+.
T Consensus        80 l~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHH
Confidence            999884  344434333333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.39  E-value=9.7e-12  Score=115.05  Aligned_cols=113  Identities=24%  Similarity=0.361  Sum_probs=105.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQK----IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..|..++..|++.+|+.+|.+++..   .|.+    ..+++++|.++.++|++++|+..|.+++.++|+++.+|+.+|.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            34499999999999999999999998   6665    4589999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++..+|++++|+..|+++++++|++..++..++.+...++
T Consensus       338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=1.6e-11  Score=110.43  Aligned_cols=121  Identities=8%  Similarity=-0.092  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRA--ACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra--~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      |.++..+..+|.++...|++++|+..|.+++..   +|....+.+..|  .++...|++++|+..|.+++...|.++.+|
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~  203 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL  203 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence            567888888999999999999999999999988   776654433333  222334889999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +++|.++..+|++++|+..|++++.++|+++.++.+++.+...++.
T Consensus       204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999988877766543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.36  E-value=3.6e-12  Score=101.63  Aligned_cols=98  Identities=11%  Similarity=0.012  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           28 GFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        28 ~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      ..|.+++.+   +|.+..+++++|.++++.|+|++|+..|.+++.++|.++.+|+.+|.++..+|++++|+.+|++++.+
T Consensus         5 ~~l~~al~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A            5 GTLAMLRGL---SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             ----CCTTC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcC---CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            457777777   89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcC
Q 023491          108 NPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus       108 dP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +|+++.++..++.+...++..
T Consensus        82 ~p~~~~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQLGDL  102 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCH
T ss_pred             CCCCcHHHHHHHHHHHHcCCH
Confidence            999999999999888776543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=3.1e-12  Score=104.69  Aligned_cols=110  Identities=13%  Similarity=0.076  Sum_probs=98.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcC
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT-LVTLK   92 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a-~~~~g   92 (281)
                      +..++..|+|++|+..|.+++..   +|.+..+++.+|.+|+.+|+|++|+..|.+++.++|.++.+++.+|.+ +...|
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS   93 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            44567789999999999999999   999999999999999999999999999999999999999999999999 88999


Q ss_pred             CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           93 EY--NSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        93 ~~--~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++  .+|+..|++++.++|.+..++..++.+...++
T Consensus        94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  129 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA  129 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence            99  99999999999999999999999888876653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.36  E-value=2e-11  Score=109.67  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            4 PAAPANKIERA--HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         4 P~~a~~l~~~G--~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      |.+....+..|  ..+...|++++|+.+|.+++..   .|.++.+++++|.+++++|++++|+..|.+++.++|+++.++
T Consensus       161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            55543333333  3333458999999999999998   999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           82 MLRAQTLVTLKEYNS-ALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        82 ~~lg~a~~~~g~~~e-Al~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +++|.++..+|++.+ |..+++++++++|+++.+.....+.
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~  278 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE  278 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999976 5688899999999999888765543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.1e-11  Score=116.08  Aligned_cols=103  Identities=28%  Similarity=0.460  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++.+|..++..|+|.+|+..|++++..   +| +..+++++|.|++++|+|++|+..|.++++++|.+..+++.+|
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            5788999999999999999999999999998   77 6899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      .++..+|++++|+..|++++.++|.+.
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999998653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.36  E-value=4e-12  Score=108.96  Aligned_cols=124  Identities=20%  Similarity=0.164  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-----KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----   73 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-----~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----   73 (281)
                      |..+..+..+|.+++..|+|.+|+.+|.+++.+.     ...+....+++++|.+|+.+|++++|+..|.+++.+     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            5567889999999999999999999999999885     335778899999999999999999999999999998     


Q ss_pred             ---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhc
Q 023491           74 ---DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL--------NPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ---~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l--------dP~~~~a~~~l~~l~~~l~~  127 (281)
                         +|....+++++|.++..+|++++|+..|++++.+        .|....+...++.+...++.
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  184 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK  184 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence               4667789999999999999999999999999999        66667777788877766544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.36  E-value=1e-11  Score=89.81  Aligned_cols=81  Identities=22%  Similarity=0.259  Sum_probs=53.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      ...+++++|.+++..|+|++|+..|.+++.++|.+..+++++|.++..+|++++|+..|++++.++|.+..++..++.+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666554


Q ss_pred             H
Q 023491          123 T  123 (281)
Q Consensus       123 ~  123 (281)
                      .
T Consensus        88 ~   88 (91)
T 1na3_A           88 Q   88 (91)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=2.3e-11  Score=104.61  Aligned_cols=108  Identities=17%  Similarity=0.104  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.++..+...|.+++..|+|.+|+.+|.+++.+   .|....+++++|.+|+.+|++++|+..|.+++.++|.+.    
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (275)
T 1xnf_A           73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL  149 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence            5788999999999999999999999999999999   888899999999999999999999999999999988764    


Q ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 023491           79 ------------------------------------------------------------------GALMLRAQTLVTLK   92 (281)
Q Consensus        79 ------------------------------------------------------------------~a~~~lg~a~~~~g   92 (281)
                                                                                        .+++.+|.++..+|
T Consensus       150 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  229 (275)
T 1xnf_A          150 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG  229 (275)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence                                                                              56778888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH
Q 023491           93 EYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        93 ~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      ++++|+..|++++.++|.+..
T Consensus       230 ~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          230 DLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCH
T ss_pred             CHHHHHHHHHHHHhCCchhHH
Confidence            999999999988888886543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.35  E-value=2.6e-11  Score=116.47  Aligned_cols=119  Identities=18%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---Cccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQK-IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~-~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      .|.++..+...|..+++.|++++|+.+|.+++...+.   +|.. ..+++++|.+|++.|++++|+..|.+++.++|.+.
T Consensus       471 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            3556777777777777777777777777777776432   3433 66777777777778888888888877777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      .+|+.+|.+|...|++++|+..|+++++++|++..++.+++.+
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA  593 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            7777788888888888888888888888887777777766654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.34  E-value=2.2e-11  Score=97.07  Aligned_cols=102  Identities=22%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|+|.+|+..|.+++.+   .|....+++++|.+++.+|++++|+..|.+++.++|.+..++.
T Consensus        43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  119 (166)
T 1a17_A           43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  119 (166)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5778999999999999999999999999999999   8999999999999999999999999999999999999999885


Q ss_pred             HH--HHHHHHcCCHHHHHHHHHHHHHh
Q 023491           83 LR--AQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        83 ~l--g~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                      .+  +.++...|++++|+..+.++..+
T Consensus       120 ~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          120 KYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            55  44588899999999999877654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=1.7e-11  Score=119.16  Aligned_cols=108  Identities=11%  Similarity=-0.007  Sum_probs=104.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|.+++..|+|++|+.+|.+++.+   +|.+..+++++|.+|+++|++++|+..|.++++++|.+..+++
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  129 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA  129 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6889999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH
Q 023491           83 LRAQTLVTL---KEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        83 ~lg~a~~~~---g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                      ++|.++..+   |++++|+..|+++++++|.+..
T Consensus       130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            999999999   9999999999999999998643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.3e-11  Score=111.79  Aligned_cols=124  Identities=13%  Similarity=0.008  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAK------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----   74 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----   74 (281)
                      ..+..+..+|.+++..|+|++|+.+|.+|+.+.+      .++..+.+|.|+|.+|+.+|+|++|+.+|.+++.+.    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            3456677899999999999999999999998754      356778899999999999999999999999999874    


Q ss_pred             ----CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           75 ----YNHTGALMLRAQTLVTLK--EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        75 ----p~~~~a~~~lg~a~~~~g--~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                          +..+.++.++|.++..+|  +|++|+.+|+++++++|+++.+...++.+...+...
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence                356789999998887764  699999999999999999999998888776655433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.4e-11  Score=94.05  Aligned_cols=87  Identities=18%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ..+..++++|.++++.|+|++|+..|.+++.++|.++.+|+++|.++..+|++.+|+.+|++++.++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhcC
Q 023491          122 KTQLSLA  128 (281)
Q Consensus       122 ~~~l~~~  128 (281)
                      ...++..
T Consensus        82 ~~~~~~~   88 (126)
T 3upv_A           82 QIAVKEY   88 (126)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhCH
Confidence            8776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.31  E-value=2.2e-11  Score=115.03  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |. +..++..|.+++..|++.+|+.+|.+++..   .|....+++++|.+++.+|++++|+..|.+++.++|.+..+++.
T Consensus       274 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  349 (537)
T 3fp2_A          274 PT-PNSYIFLALTLADKENSQEFFKFFQKAVDL---NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ  349 (537)
T ss_dssp             CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred             CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44 677778888888888888888888888887   88888888889999999999999999999998888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.++..+|++++|+..|++++.++|.+..++..++.+...++
T Consensus       350 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  392 (537)
T 3fp2_A          350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG  392 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            9999999999999999999999998888888888877766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.31  E-value=1.4e-11  Score=108.25  Aligned_cols=111  Identities=12%  Similarity=0.017  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .++..++.+|..++..|+|.+|+.+|.+++..   .|....+++.+|.+++.+|++++|+..|.+++.++|.+..+++.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   95 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   95 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence            35567889999999999999999999999998   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      |.++..+|++.+|+..|++++.++|.+..+...+
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            9999999999999999999999999876554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=4.4e-11  Score=86.39  Aligned_cols=87  Identities=23%  Similarity=0.320  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .+.++..++..|..++..|+|.+|+.+|.+++..   .|....+++++|.+++++|++++|+..|.+++.++|.+..+++
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3457889999999999999999999999999999   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 023491           83 LRAQTLVTLK   92 (281)
Q Consensus        83 ~lg~a~~~~g   92 (281)
                      ++|.++..+|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=3e-11  Score=107.82  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC-----
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKL-HDFKKAAEECTSVLELDYNH-----   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~kl-g~y~~Ai~~~~~al~i~p~~-----   77 (281)
                      +..+.+.|.++...|+|++|+.+|.+++.+.+...   ..+.++.++|.+|... |++++|+..|.+++.+.|..     
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            67888999999999999999999999999854211   1267899999999995 99999999999999998754     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491           78 -TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV  113 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~  113 (281)
                       ..++.++|.++..+|+|.+|+..|++++.+.|.+..
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence             568999999999999999999999999999987653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=4e-11  Score=89.67  Aligned_cols=87  Identities=10%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQN  116 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~  116 (281)
                      .+.+++++|.+++..|+|++|+..|.+++.++|.++.+++++|.++..+|++++|+..|++++.++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999999998      88888


Q ss_pred             HHHHHHHHhhcCC
Q 023491          117 LQARLKTQLSLAP  129 (281)
Q Consensus       117 ~l~~l~~~l~~~~  129 (281)
                      .++.+...++...
T Consensus        83 ~~~~~~~~~~~~~   95 (111)
T 2l6j_A           83 RLELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhHh
Confidence            8888887777443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.30  E-value=6.5e-12  Score=99.01  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                      ..+.++.++|.++++.|+|++|+..|.++|+++|.++.+|+++|.+|+.+|+|++|+.+|+++|+++|.+.
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            45677899999999999999999999999999999999999999999999999999999999999998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3.5e-11  Score=112.53  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK------IALHSNRAACYLK---LHDFKKAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~------~~a~~nra~~~~k---lg~y~~Ai~~~~~al~i   73 (281)
                      .|.++..+...|.+++..|++++|+..|.+++..   .|..      ..+++++|.+++.   +|++++|+..|.+++.+
T Consensus       368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL---ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            4667778888899999999999999999998888   4443      3488889999998   89999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +|.+..+++.+|.++..+|++.+|+..|++++.++|++..++..+..+..
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888776655544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.28  E-value=4.6e-11  Score=109.51  Aligned_cols=97  Identities=19%  Similarity=0.132  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+..+|.+++..|+|.+|+.+|.++|.+   +|.+..+++++|.+|+.+|+|++|+.+|.++++++|.+..+++++|.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            689999999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHH-HHHHHHHHH
Q 023491           87 TLVTLKEYNSA-LFDVNRLIE  106 (281)
Q Consensus        87 a~~~~g~~~eA-l~~~ekAL~  106 (281)
                      ++..+|++.+| ...|++++.
T Consensus       273 ~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 456666553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.27  E-value=1.2e-10  Score=111.79  Aligned_cols=121  Identities=11%  Similarity=-0.006  Sum_probs=111.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|..+++.|++++|+.+|.+++..   .|.+..+++.+|.+|.+.|++++|+..|.+++.+.|.+..+|+
T Consensus       369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  445 (597)
T 2xpi_A          369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL  445 (597)
T ss_dssp             CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred             CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            4678889999999999999999999999999998   8889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      .+|.+|...|++++|+..|++++.+.|.+..++..++.+....+
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999988888887766543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.27  E-value=9e-12  Score=92.39  Aligned_cols=90  Identities=21%  Similarity=0.155  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLV   89 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~-a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~   89 (281)
                      +.+|..++..|+|.+|+..|.+++..   +|.+.. +++++|.+|+.+|++++|+..|.+++.++|++..++++      
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence            45666666677777777777777666   666666 66677777777777777777777777777666666543      


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 023491           90 TLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        90 ~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                        +.+.+|+..|++++.++|++
T Consensus        75 --~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             --HHHHHHHHHHCCTTHHHHCC
T ss_pred             --HHHHHHHHHHHHHhccCccc
Confidence              45566666666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=8.1e-11  Score=95.46  Aligned_cols=88  Identities=11%  Similarity=0.032  Sum_probs=82.8

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .+..+.+++.+|.++++.|+|++|+..|.+++.++|.++.+|+++|.+|+.+|+|.+|+.+|++++.++|++..++.+++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 023491          120 RLKTQLSL  127 (281)
Q Consensus       120 ~l~~~l~~  127 (281)
                      .+...++.
T Consensus        87 ~~~~~~g~   94 (164)
T 3sz7_A           87 LARFDMAD   94 (164)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHccC
Confidence            88877653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.25  E-value=5.6e-11  Score=89.58  Aligned_cols=71  Identities=15%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      +|.++.+++++|.+|+.+|+|++|+..|.++++++|.++.+|+++|.+|..+|++++|+..|++++.+.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            67888899999999999999999999999999999999999999999999999999999999999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=4.2e-11  Score=106.88  Aligned_cols=109  Identities=12%  Similarity=0.030  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---
Q 023491            7 PANKIERAHQLYRD-GRYEEALGFYTEALSVAKIKQQ---KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---   79 (281)
Q Consensus         7 a~~l~~~G~~~~~~-gdy~eAl~~y~~aL~~~~~~p~---~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---   79 (281)
                      +..+...|.++... |+|++|+.+|.+++.+.+....   ...++.++|.+|+++|+|++|+..|.+++.+.|.+..   
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  196 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence            56788999999996 9999999999999998542211   2567999999999999999999999999999987543   


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           80 ----ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        80 ----a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                          +|+++|.++..+|++.+|+.+|++++.++|......
T Consensus       197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence                689999999999999999999999999999876543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=4e-11  Score=102.67  Aligned_cols=104  Identities=18%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----   73 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----   73 (281)
                      |..+..+...|.+++..|+|++|+.+|.+++.+..     .++....+++++|.+|+.+|++++|+..|.+++.+     
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  161 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            45677889999999999999999999999999852     24778999999999999999999999999999999     


Q ss_pred             ---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           74 ---DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        74 ---~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                         .|....+++++|.++..+|++++|+..|++++.+
T Consensus       162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               6667889999999999999999999999999997

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.24  E-value=1.3e-10  Score=104.12  Aligned_cols=119  Identities=9%  Similarity=-0.063  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~-a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.++..+...|..+...|++++|+..|.+++.+   .|.+.. +|.++|.++.+.|++++|+..|.+++++.|.+..+|
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  171 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence            6888999999999999999999999999999998   777775 899999999999999999999999999999888887


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           82 MLRAQTLVT-LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        82 ~~lg~a~~~-~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +..|.+.+. .|++..|+..|+++++++|++..++..++.+...
T Consensus       172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            766666443 6999999999999999999988888777766544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.23  E-value=1.2e-10  Score=110.00  Aligned_cols=116  Identities=13%  Similarity=0.035  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+...|..++..|++.+|+..|.+++..   +|. ..+++.+|.+++..|++++|+..|.+++.++|.++.+++.+|.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  318 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ  318 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            346888999999999999999999999998   887 8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++...|++.+|+..|++++.++|.+..++..++.+...++
T Consensus       319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  358 (537)
T 3fp2_A          319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG  358 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999888888876554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=4.7e-10  Score=97.70  Aligned_cols=114  Identities=14%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~   77 (281)
                      ++|.++.+++..|..++..|++.+|+.+|.+++..     ....+++++|.+|+.    .+++++|+..|.+++.++  +
T Consensus         1 a~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~   73 (273)
T 1ouv_A            1 MAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y   73 (273)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C
Confidence            45778888888888888888888888888888773     345677888888888    888888888888887775  7


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           78 TGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        78 ~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +.+++++|.+|..    .+++.+|+..|++++.++  +..+...++.+...
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            7788888888888    888888888888888773  66677777766554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.22  E-value=1.5e-10  Score=90.50  Aligned_cols=83  Identities=17%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ..++.+|.++++.|++.+|+..|.+++.++|+++.+|+.+|.++..+|++.+|+..|+++++++|++..++..++.+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             hhc
Q 023491          125 LSL  127 (281)
Q Consensus       125 l~~  127 (281)
                      ++.
T Consensus        98 ~g~  100 (121)
T 1hxi_A           98 EHN  100 (121)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.22  E-value=2.3e-10  Score=88.86  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=82.7

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      .+..+..++.+|.+++..|+|++|+..|.+++.++|.++.+++++|.++..+|++..|+..|++++.++|++..++..++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 023491          120 RLKTQLSL  127 (281)
Q Consensus       120 ~l~~~l~~  127 (281)
                      .+...++.
T Consensus        85 ~~~~~~~~   92 (137)
T 3q49_B           85 QCQLEMES   92 (137)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhh
Confidence            88877653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.22  E-value=2.2e-10  Score=86.75  Aligned_cols=89  Identities=18%  Similarity=0.128  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|.+++..|++.+|+..|.+++..   .|....+++++|.+++.+|++++|+..|.+++.++|.+..+++
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  118 (131)
T 2vyi_A           42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS  118 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHH
Confidence            4778899999999999999999999999999999   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCH
Q 023491           83 LRAQTLVTLKEY   94 (281)
Q Consensus        83 ~lg~a~~~~g~~   94 (281)
                      .+|.++..+|++
T Consensus       119 ~l~~~~~~~~~~  130 (131)
T 2vyi_A          119 NLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.20  E-value=2.9e-10  Score=88.85  Aligned_cols=103  Identities=18%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------   77 (281)
                      +..+...|..++..|+|.+|+.+|.+++.+.+..   .....+++++|.+++.+|++++|+..|.+++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            5678899999999999999999999999985521   1234689999999999999999999999999886543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      ..+++++|.++..+|++++|+..|++++.+.+
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999998743

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.20  E-value=1.2e-10  Score=87.70  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=75.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CH
Q 023491            1 MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HT   78 (281)
Q Consensus         1 ~a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~   78 (281)
                      |.+|.++..++.+|.+++..|+|++|+..|.+++.+   +|....+|+++|.+|+.+|++++|+..|.+++.+.+.  +.
T Consensus         1 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            578999999999999999999999999999999999   9999999999999999999999999999999998763  44


Q ss_pred             HHHHHHHHHHHHcCC
Q 023491           79 GALMLRAQTLVTLKE   93 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~   93 (281)
                      .+...+..++...+.
T Consensus        78 ~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           78 KDLSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHccc
Confidence            555555555554443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=8.2e-11  Score=102.56  Aligned_cols=125  Identities=19%  Similarity=0.185  Sum_probs=108.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD---   74 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~---   74 (281)
                      +|..+..+...|.+++..|+|.+|+.+|.+++.+..     ..+....+++++|.+|+.+|++++|+..|.+++.+.   
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            345677889999999999999999999999998852     347778999999999999999999999999999885   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhc
Q 023491           75 -----YNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL--------NPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        75 -----p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l--------dP~~~~a~~~l~~l~~~l~~  127 (281)
                           +....+++.+|.++..+|++.+|+..|++++.+        .|....+...++.+...++.
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  210 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK  210 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence                 456678999999999999999999999999998        66666677777777666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=2.1e-10  Score=102.77  Aligned_cols=116  Identities=15%  Similarity=0.078  Sum_probs=104.9

Q ss_pred             CCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hhhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYR-------DGRY-------EEALGFYTEALS-VAKIKQQKIALHSNRAACYLKLHDFKKAAEEC   67 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~-------~gdy-------~eAl~~y~~aL~-~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~   67 (281)
                      +|.++..|+..|..+..       .|++       ++|+..|.+++. +   .|....+|+++|.++.++|++++|+..|
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~  122 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---LKKNMLLYFAYADYEESRMKYEKVHSIY  122 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            58899999999998874       5885       999999999999 7   8899999999999999999999999999


Q ss_pred             HHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           68 TSVLELDYNHTG-ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        68 ~~al~i~p~~~~-a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ++++++.|.++. +|+.+|.++.+.|++++|+..|++++++.|....++...+.+
T Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999999887 999999999999999999999999999999876665544433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=101.98  Aligned_cols=123  Identities=21%  Similarity=0.142  Sum_probs=104.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--   74 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--   74 (281)
                      .+|..+..+...|.+++..|+|.+|+.+|.+++.+..     ..+....+++++|.+|+.+|++++|+..|.+++.+.  
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3577889999999999999999999999999999643     267788999999999999999999999999999883  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 023491           75 ------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN--------PSSEVYQNLQARLKTQ  124 (281)
Q Consensus        75 ------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld--------P~~~~a~~~l~~l~~~  124 (281)
                            +....+++.+|.++..+|++.+|+..|++++.+.        |....+...++.+...
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  165 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN  165 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence                  4567799999999999999999999999999984        3344455555555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.17  E-value=1.9e-10  Score=87.97  Aligned_cols=88  Identities=18%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++..|.+++..|++++|+.+|.+++..   .|....+++++|.+++++|++++|+..|.+++.++|.+..+++
T Consensus        46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  122 (133)
T 2lni_A           46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD  122 (133)
T ss_dssp             CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence            5788999999999999999999999999999999   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 023491           83 LRAQTLVTLKE   93 (281)
Q Consensus        83 ~lg~a~~~~g~   93 (281)
                      .+|.++..+|+
T Consensus       123 ~l~~~~~~~~~  133 (133)
T 2lni_A          123 GYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999998774

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.17  E-value=1.7e-10  Score=102.61  Aligned_cols=102  Identities=9%  Similarity=0.058  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-----   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-----   77 (281)
                      +.++...|.+++..|+|++|+.+|.+++....    ..+..+.+++|+|.+|+++|+|++|+..|.+++.+.+..     
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~  234 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            45788999999999999999999999997543    234557789999999999999999999999999887544     


Q ss_pred             -HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 023491           78 -TGALMLRAQTLVTLKE-YNSALFDVNRLIELN  108 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~-~~eAl~~~ekAL~ld  108 (281)
                       +.+|+++|.++..+|+ +++|+..|++|+.+.
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence             7899999999999995 799999999999763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=4.7e-10  Score=104.64  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=105.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLH--DFKKAAEECTSVLELDY   75 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg--~y~~Ai~~~~~al~i~p   75 (281)
                      .|..+..+.+.|.+++..|+|.+|+.+|.+++.+.+     ..+..+.++.++|.+++++|  +|++|+.+|++++.++|
T Consensus        90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p  169 (472)
T 4g1t_A           90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP  169 (472)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence            466778889999999999999999999999998754     23456889999998888765  69999999999999999


Q ss_pred             CCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           76 NHTGALMLRAQTLVT---LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~---~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +++.+++.+|.+++.   .+++.+|+..|+++++++|.+..+..+++.....+
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            999999999998655   57778999999999999999999888877655443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=4.4e-10  Score=103.03  Aligned_cols=121  Identities=15%  Similarity=0.136  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI----KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---   78 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---   78 (281)
                      .+..+...|.+++..|++..|+.+|.+++.+.+.    .+..+.+++++|.+|..+|+|++|+..|.+++.+.+...   
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  221 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ  221 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence            3456677777777777777777777777776542    223456677777777777777777777777776644222   


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHhh
Q 023491           79 ---GALMLRAQTLVTLKEYNSALFDVNRLIEL-----N-PSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        79 ---~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-----d-P~~~~a~~~l~~l~~~l~  126 (281)
                         .+++++|.+|..+|++++|+..|++++.+     + |....+..+++.+...++
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence               46777777777777777777777777773     4 555556666666655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.16  E-value=1.5e-10  Score=105.85  Aligned_cols=121  Identities=16%  Similarity=0.169  Sum_probs=105.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI----ALHSNRAACYLKLHDFKKAAEECTSVLEL------   73 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~----~a~~nra~~~~klg~y~~Ai~~~~~al~i------   73 (281)
                      +..+..++..|..++..|+|.+|+.+|.+++..   .|.+.    .+++++|.+|+.+|+|++|+..|.+++.+      
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  121 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND  121 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence            345677889999999999999999999999998   66554    68999999999999999999999999988      


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL------NPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l------dP~~~~a~~~l~~l~~~l~~  127 (281)
                      .+....+++.+|.+|..+|++.+|+..|++++.+      .+....+...++.+...++.
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            5667789999999999999999999999999998      45555677777777666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.16  E-value=2.9e-10  Score=94.71  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-------HTG-----ALMLRAQTLVTLKEYNSALFDVNRLIEL---  107 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-------~~~-----a~~~lg~a~~~~g~~~eAl~~~ekAL~l---  107 (281)
                      .+..++++|.+++++|+|++|+..|+++|+++|+       +..     +|+++|.++..+|+|++|+.+|.+||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3566789999999999999999999999999999       554     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHhhcC
Q 023491          108 ----NPSSEVYQ----NLQARLKTQLSLA  128 (281)
Q Consensus       108 ----dP~~~~a~----~~l~~l~~~l~~~  128 (281)
                          +|++..++    .+++.+...++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~  118 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRG  118 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence                99999999    9998888777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.16  E-value=3.1e-11  Score=116.25  Aligned_cols=105  Identities=21%  Similarity=0.257  Sum_probs=95.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|.+++..|+|++|+..|.+++.+   +|..+.+++++|.+|+.+|+|++|+..|.++++++|.+..+++
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~  112 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  112 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5888999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 023491           83 LRAQT--LVTLKEYNSALFDVN-----------RLIELNPS  110 (281)
Q Consensus        83 ~lg~a--~~~~g~~~eAl~~~e-----------kAL~ldP~  110 (281)
                      ++|.+  +...|++++|+..++           +++.++|.
T Consensus       113 ~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1          113 KYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            99998  899999999999999           88888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.16  E-value=4.1e-10  Score=111.04  Aligned_cols=123  Identities=20%  Similarity=0.141  Sum_probs=117.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGR----------YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH--DFKKAAEECTSV   70 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gd----------y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg--~y~~Ai~~~~~a   70 (281)
                      +|.+..+|..+|.++...|+          |.+|+..|.+++..   +|....+|+.|+.++.+++  +|++|+.+|.++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            78999999999999999988          99999999999999   9999999999999999999  779999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           71 LELDYNHTGALMLRAQTLVTLK-EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~~g-~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      ++++|.+..||..+|.++..+| .+++|++++.++++++|.|..++..+..+...+...
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            9999999999999999999999 999999999999999999999999999998887544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.15  E-value=1.5e-10  Score=85.70  Aligned_cols=86  Identities=12%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS--SEVYQNL  117 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~--~~~a~~~  117 (281)
                      +|.+..+++.+|.+++..|++++|+..|.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999  9999888


Q ss_pred             HHHHHHHh
Q 023491          118 QARLKTQL  125 (281)
Q Consensus       118 l~~l~~~l  125 (281)
                      ++.+...+
T Consensus        82 l~~~~~~~   89 (112)
T 2kck_A           82 KADALRYI   89 (112)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHH
Confidence            88876554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=5e-10  Score=82.78  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHH
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTG-ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ--NLQARLKT  123 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~-a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~--~~l~~l~~  123 (281)
                      .+++|.++++.|+|++|+..|.+++.++|.+.. +++++|.++..+|++++|+..|++++.++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999 999999999999999999999999999999998887  44444444


Q ss_pred             Hh
Q 023491          124 QL  125 (281)
Q Consensus       124 ~l  125 (281)
                      ..
T Consensus        83 ~~   84 (99)
T 2kc7_A           83 FY   84 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.13  E-value=1e-09  Score=100.41  Aligned_cols=122  Identities=14%  Similarity=0.007  Sum_probs=115.9

Q ss_pred             CCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQL----YRD---GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK--KAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~----~~~---gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~--~Ai~~~~~al~i   73 (281)
                      +|.+..++..++.++    ...   +++.+++.++.+++..   +|.+..+|+.|+.++.++|.+.  +++..|.++|.+
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~---~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS---DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence            688999999999998    666   8999999999999999   9999999999999999999999  999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKE------YNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~------~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.+..+|..++.++..++.      +++++.++.+++.++|.|..++..+..+...++.
T Consensus       176 d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          176 DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999998      9999999999999999999999999999887764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=4.9e-10  Score=92.12  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------------------------hcCcccHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-------------------------------KIKQQKIALHSNRA   51 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-------------------------------~~~p~~~~a~~nra   51 (281)
                      +|.++..++.+|.+++..|++++|+..|.+++...                               ..+|.+..+++++|
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46788888888888888888888877665543221                               03788899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      .+++.+|++++|+..|.++++++|.+  ..+++++|.++..+|++++|+..|+++|.
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999976  66999999999999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=3.3e-09  Score=92.29  Aligned_cols=112  Identities=12%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q 023491            4 PAAPANKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDY   75 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p   75 (281)
                      |.++.+++.+|..++.    .+++.+|+.+|.+++..   +  +..+++++|.+|+.    .+++++|+..|.+++..+ 
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-  108 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-  108 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence            4566778888888888    88888888888888876   3  67788888888888    888888888888888763 


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           76 NHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                       ++.+++++|.+|..    .+++++|+.+|+++++++  +..+...++.+...
T Consensus       109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence             77888888888888    888888888888888875  45566666665543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.12  E-value=5.3e-10  Score=102.49  Aligned_cols=104  Identities=15%  Similarity=0.079  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----c-CC
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----D-YN   76 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----~-p~   76 (281)
                      .+..+...|.++...|+|++|+.+|.+++.+.+.   .+..+.+++++|.+|+.+|+|++|+..|.+++.+     + |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            3567889999999999999999999999998652   2334578999999999999999999999999994     5 77


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      .+.+++++|.++..+|++++|+..|++++.+.+
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.12  E-value=3.6e-10  Score=94.41  Aligned_cols=95  Identities=12%  Similarity=0.119  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..+..+|.+++..|+|.+|+.+|.+++.+   +|....+++++|.+|+.+|+|++|+..|.+++.++|.+..++..++.+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            78899999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHH-HHHHHHH
Q 023491           88 LVTLKEYNSAL-FDVNRLI  105 (281)
Q Consensus        88 ~~~~g~~~eAl-~~~ekAL  105 (281)
                      +..++++.++. ..|.+.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          166 VNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            99999988887 4444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=7.9e-10  Score=101.45  Aligned_cols=105  Identities=16%  Similarity=0.019  Sum_probs=94.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcCCC
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLE-----LDYNH   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~-----i~p~~   77 (281)
                      .+..+...|.+++..|+|++|+.+|.+++.+...   ....+.+++++|.+|+.+|++++|+..|.+++.     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            3567889999999999999999999999998652   224577899999999999999999999999999     67778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      +.+++++|.++..+|++++|+..|++++.+.+.
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.12  E-value=4.8e-10  Score=99.60  Aligned_cols=102  Identities=9%  Similarity=0.073  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ----KIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------   76 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~----~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------   76 (281)
                      +.++...|.+++..|+|++|+.+|.+++.+....+.    .+.+++++|.+|+.+|+|++|+..|.+++.+.+.      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            557888999999999999999999999965442333    2368899999999999999999999999887643      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 023491           77 HTGALMLRAQTLVTLKEYNSA-LFDVNRLIELN  108 (281)
Q Consensus        77 ~~~a~~~lg~a~~~~g~~~eA-l~~~ekAL~ld  108 (281)
                      ...+|+++|.++..+|++++| ..+|++|+.+.
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            267899999999999999999 77789888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.11  E-value=1.5e-09  Score=99.38  Aligned_cols=121  Identities=13%  Similarity=-0.001  Sum_probs=114.0

Q ss_pred             CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHh
Q 023491            3 SPAAPANKIERAHQLYRDG--RYEEALGFYTEALSVAKIKQQKIALHSNRAACY----LKL---HDFKKAAEECTSVLEL   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~----~kl---g~y~~Ai~~~~~al~i   73 (281)
                      ||.+..++..+|.++...|  ++.+|+.++..+|..   +|.+..+|+.|+.++    ..+   +++.+++..|.+++.+
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            7899999999999999999  999999999999999   999999999999999    777   8999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           74 DYNHTGALMLRAQTLVTLKEYN--SALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~--eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|.+..+|+.++.++..+|.+.  +++..+.++++++|.|-.++..+..+...+.
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998  9999999999999999999999888876654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.11  E-value=9.5e-10  Score=85.82  Aligned_cols=103  Identities=16%  Similarity=0.171  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------HT   78 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------~~   78 (281)
                      ..+...|.+++..|+|.+|+.+|.+++.+.+..   +....+++++|.+++.+|++++|+..|.+++.+.+.      ..
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            577889999999999999999999999985421   223778999999999999999999999999987432      24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      .+++.+|.++..+|++++|+..|++++++...
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999987543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=3.7e-10  Score=107.83  Aligned_cols=91  Identities=19%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..++++|.++++.|+|.+|+.+|.++|.+   +|.+..+|+++|.+|+.+|+|++|+.+|.++++++|++..++..++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  393 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            688999999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 023491           87 TLVTLKEYNSALFD  100 (281)
Q Consensus        87 a~~~~g~~~eAl~~  100 (281)
                      ++..++++.+|...
T Consensus       394 ~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          394 CQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=4.8e-10  Score=110.50  Aligned_cols=122  Identities=12%  Similarity=0.061  Sum_probs=114.7

Q ss_pred             CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDG--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.+..+|..+|-++...+  +|.+|+.++.+++..   +|.+..+|++|+.++.++| .++++++++.++|+.+|.+..
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s  179 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence            6899999999999999999  779999999999999   9999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           80 ALMLRAQTLVTL--------------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        80 a~~~lg~a~~~~--------------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|+.+|.++..+              +.+++|++++.+|+.++|++..++..+.-+......
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            999999999986              668999999999999999999999999888665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.10  E-value=1.9e-10  Score=92.98  Aligned_cols=90  Identities=12%  Similarity=-0.026  Sum_probs=80.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~   81 (281)
                      +|.++..+..+|.+++..|+|.+|+..|.++|.+   +|.++.+|+++|.+|+.+|+|++|+.+|.+++.++|++. .+.
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  135 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA  135 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3556689999999999999999999999999999   999999999999999999999999999999999999998 667


Q ss_pred             HHHHHHHHHcCCHH
Q 023491           82 MLRAQTLVTLKEYN   95 (281)
Q Consensus        82 ~~lg~a~~~~g~~~   95 (281)
                      ..++.+...++.+.
T Consensus       136 ~~l~~~~~~~~~~~  149 (162)
T 3rkv_A          136 REMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766655443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.10  E-value=5.7e-10  Score=97.22  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cC
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK----IALHSNRAACYLKLHDFKKAAEECTSVLEL------DY   75 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~----~~a~~nra~~~~klg~y~~Ai~~~~~al~i------~p   75 (281)
                      +...++..|..++..|+|.+|+.+|.+++..   .|.+    ..+++.+|.+++..|++++|+..|.+++.+      .+
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   80 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   80 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence            4567888999999999999999999999998   6655    578999999999999999999999999887      44


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhc
Q 023491           76 NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQNLQARLKTQLSL  127 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~~l~~l~~~l~~  127 (281)
                      ....+++.+|.++..+|++.+|+..|++++.+.+..      ..+...++.+...++.
T Consensus        81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            557799999999999999999999999999986643      2256666666665554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.10  E-value=3.6e-10  Score=86.83  Aligned_cols=87  Identities=10%  Similarity=0.079  Sum_probs=77.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..++.+|.+++..|+|++|+.+|.+++.+   +|.+..+++++|.|++.+|++++|+..|.+++.+.|.++....
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4778899999999999999999999999999999   9999999999999999999999999999999999999988765


Q ss_pred             HHHHHHHHcC
Q 023491           83 LRAQTLVTLK   92 (281)
Q Consensus        83 ~lg~a~~~~g   92 (281)
                      ....+....+
T Consensus       100 ~~~ai~~~~~  109 (117)
T 3k9i_A          100 YKQAILFYAD  109 (117)
T ss_dssp             THHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.10  E-value=2e-09  Score=80.71  Aligned_cols=87  Identities=24%  Similarity=0.350  Sum_probs=82.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|.+++..|++.+|+..|.+++..   .|....+++++|.+++.+|++++|+..|.+++.++|.+..+++
T Consensus        39 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  115 (125)
T 1na0_A           39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ  115 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4678889999999999999999999999999998   8888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 023491           83 LRAQTLVTLK   92 (281)
Q Consensus        83 ~lg~a~~~~g   92 (281)
                      .+|.++...|
T Consensus       116 ~l~~~~~~~g  125 (125)
T 1na0_A          116 NLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.10  E-value=5.5e-10  Score=91.94  Aligned_cols=104  Identities=10%  Similarity=-0.014  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC--
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL---DYN--   76 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i---~p~--   76 (281)
                      ..+..+...|.+++..|+|.+|+.+|.+++.+..   ..+....+++++|.+|+.+|++++|+..|.+++.+   .++  
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            5678899999999999999999999999999654   24566888999999999999999999999999988   342  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           77 --HTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        77 --~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                        ...+++++|.++..+|++++|+..|++++.+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              34679999999999999999999999999874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.10  E-value=9.4e-10  Score=99.42  Aligned_cols=121  Identities=19%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK----IALHSNRAACYLKLHDFKKAAEECTSVLELD-----   74 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----   74 (281)
                      ...+..++..|..++..|+|.+|+.+|.+++..   .|.+    +.+++.+|.+|+.+|+|.+|+..|.+++.+.     
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   82 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD   82 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence            346778899999999999999999999999998   5555    5789999999999999999999999998873     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhc
Q 023491           75 -YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQNLQARLKTQLSL  127 (281)
Q Consensus        75 -p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~~l~~l~~~l~~  127 (281)
                       +....+++.+|.++..+|++.+|+..|++++.+.|..      ..+...++.+...++.
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence             4457799999999999999999999999999987643      3366666666666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=1e-09  Score=90.64  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHH
Q 023491           23 YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH---DFKKAAEECTSVLELD-Y-NHTGALMLRAQTLVTLKEYNSA   97 (281)
Q Consensus        23 y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~-p-~~~~a~~~lg~a~~~~g~~~eA   97 (281)
                      ...+...|...+..   ++.+..+.|++|.|+.+.+   ++.+++..++.+++.+ | .+..++|++|.+++++|+|..|
T Consensus        14 l~~~~~~y~~e~~~---~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            45566778887776   7889999999999999988   7889999999999998 6 5789999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           98 LFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +.+++++|+++|+|..++.++..+...+...
T Consensus        91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998887543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=8.4e-11  Score=107.95  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..++++|.+++..|+|.+|+.+|.++|.+   +|.+..+++++|.+|+.+|+|++|+.+|.++++++|.+..++..++.+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            37889999999999999999999999999   999999999999999999999999999999999999999999999998


Q ss_pred             -HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           88 -LVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        88 -~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                       ....+.+..+...|.+++.+.|.++..
T Consensus       308 ~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          308 AEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence             455677889999999999999987643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.08  E-value=5.5e-10  Score=100.29  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------   77 (281)
                      +..+...|.++.. |+|++|+.+|.+++.+.+..   .....++.++|.+|.++|+|++|+..|.+++.+.+.+      
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            3455566666666 77777777777776664311   1124566677777777777777777777776665432      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      ..+++.+|.++..+|++.+|+..|++++ ++|..
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            2356666666666777777777777777 66654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.08  E-value=6.9e-10  Score=98.57  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHH
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQ---KIALHSNRAACYLKLHDFKKAAEECTSVLELD-------YNHTGA   80 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~---~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-------p~~~~a   80 (281)
                      ...|..++..++|++|+.+|.+++.+......   .+.+++++|.+|+.+|+|++|+..|.+++.+.       +....+
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            35788888889999999999999996332222   25679999999999999999999999999532       223458


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhh
Q 023491           81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQNLQARLKTQLS  126 (281)
Q Consensus        81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~~l~~l~~~l~  126 (281)
                      ++++|.+|..+|+|++|+..|++++.+.+..      ..+..+++.+...++
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999987543      677888888887765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=8.7e-10  Score=98.43  Aligned_cols=104  Identities=15%  Similarity=-0.011  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------------------------hcCcccHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-------------------------------KIKQQKIALHSNRA   51 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-------------------------------~~~p~~~~a~~nra   51 (281)
                      +|.++.+++.+|.++...|++++|+..|.+++...                               ..+|.+..+++++|
T Consensus       147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            68899999999999999999999887766653210                               13889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      .+|+..|++++|+..|.++++.+|++  ..++.++|.++..+|+..+|+..|+++|.
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998  89999999999999999999999999885

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.4e-09  Score=99.80  Aligned_cols=121  Identities=12%  Similarity=0.025  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIK----QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----   76 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~----p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----   76 (281)
                      .+..+...|.+++..|++..|+.+|.+++.+.+..    +..+.+++++|.+|+.+|+|++|+..|.+++.+.+.     
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            46788899999999999999999999999986632    235788999999999999999999999999987531     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhh
Q 023491           77 -HTGALMLRAQTLVTLKEYNSALFDVNRLIE-----LNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        77 -~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~-----ldP~~~~a~~~l~~l~~~l~  126 (281)
                       ...+++++|.+|..+|++++|+..|++++.     .+|....+...++.+...++
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g  275 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG  275 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC
Confidence             246899999999999999999999999999     67777777788887776654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.07  E-value=2.7e-10  Score=101.58  Aligned_cols=116  Identities=17%  Similarity=0.168  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----   78 (281)
                      +|.++..+..+|.+++..|+|.+|+..|.+++.+   +|.+..+++++|.+|+.+|+|++|+..|.+++.++|++.    
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  110 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG  110 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence            5889999999999999999999999999999999   999999999999999999999999999999999988652    


Q ss_pred             -HH--------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           79 -GA--------------------------LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        79 -~a--------------------------~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                       .+                          ...++.  +..|++++|+..|+++++++|++..+...+..+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  180 (281)
T 2c2l_A          111 DDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQACIEA  180 (281)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHHHHH
Confidence             11                          111122  23578899999999999999988776666655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.07  E-value=2.7e-09  Score=94.75  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCH----
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVL---ELDYNHT----   78 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al---~i~p~~~----   78 (281)
                      .++..|..+...|+|++|+.+|.+++......   ...+.+++++|.+|+.+|+|++|+..|.+++   ...+...    
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~  196 (293)
T 2qfc_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence            34567788888899999999999999764311   1226689999999999999999999999999   4455533    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhcC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS------SEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~------~~~a~~~l~~l~~~l~~~  128 (281)
                      .+++++|.+|..+|+|++|+..|++++.+.+.      ...+..+++.+...++..
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  252 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE  252 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCc
Confidence            69999999999999999999999999998643      156677777777766544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.07  E-value=5.6e-10  Score=100.24  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------   77 (281)
                      +..+...|.++...|+|.+|+.+|.+++.+..  .++ ..+.++.++|.+|.. |+|++|+..|.+++.+.+..      
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            55778899999999999999999999999854  122 246789999999999 99999999999999997643      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      ..+++++|.+|..+|+|.+|+..|++++.+.|.+
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999987653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.06  E-value=3e-09  Score=79.03  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=78.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      .+..++.+|.+++..|+|++|+..|.+++.++|.++.+++.+|.++..+|++.+|+..|++++.++|.+..+...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHhh
Q 023491          123 TQLS  126 (281)
Q Consensus       123 ~~l~  126 (281)
                      ..++
T Consensus        83 ~~~~   86 (118)
T 1elw_A           83 EFLN   86 (118)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            6654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.06  E-value=5.5e-09  Score=96.64  Aligned_cols=123  Identities=20%  Similarity=0.144  Sum_probs=115.4

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGR----------YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--FKKAAEECTS   69 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gd----------y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--y~~Ai~~~~~   69 (281)
                      -||.+..++..++.++...+.          +.+++.++..+|..   +|.+..+|+.|+.++.+++.  +.+++.+|.+
T Consensus        59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k  135 (331)
T 3dss_A           59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCAR  135 (331)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred             HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence            479999999999999988766          78999999999998   99999999999999999994  9999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           70 VLELDYNHTGALMLRAQTLVTLKE-YNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        70 al~i~p~~~~a~~~lg~a~~~~g~-~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ++.++|.+..+|..++.++..+|. +++++.++.++++++|.|..++..+..+...+..
T Consensus       136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999 6999999999999999999999999999887743

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.05  E-value=5.6e-09  Score=96.59  Aligned_cols=119  Identities=13%  Similarity=0.060  Sum_probs=110.6

Q ss_pred             CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDG--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-FKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-y~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.+..+|..++.++...+  .|.+++.++.+++..   +|.+..+|+.|+.++..+|. +++++.++.++|..+|.+..
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~---dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            7899999999999999998  499999999999999   99999999999999999999 69999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           80 ALMLRAQTLVTL--------------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        80 a~~~lg~a~~~~--------------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      +|..++.++..+              +.+.+++.++.+++.++|++..++..+.-+...
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999988              569999999999999999999999866555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=1.3e-09  Score=98.61  Aligned_cols=112  Identities=11%  Similarity=-0.050  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC-CH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ-KIALHSNRAACYLKLHDFKKAAEECTSVLELD--YN-HT   78 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~-~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~-~~   78 (281)
                      .|..+ .++.+|..+++.++|.+|+.+|+.++..  .++. ...+++++|.++..+|++++|+..|.+++...  |. .+
T Consensus       132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~  208 (282)
T 4f3v_A          132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR  208 (282)
T ss_dssp             TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred             CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence            45566 8899999999999999999999977764  1222 24589999999999999999999999998654  54 66


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      .+++++|.++..+|+.++|...|++++..+|+ ..+...+
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            79999999999999999999999999999999 7766655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.04  E-value=2.1e-09  Score=97.16  Aligned_cols=121  Identities=16%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------H
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------T   78 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------~   78 (281)
                      ..+...|.+++..|++++|+.+|.+++.+.+..   .....+++++|.+|+.+|++++|+..|.+++.+.+..      .
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  307 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG  307 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            356677777777777777777777777663311   1125667777777777777777777777777665433      5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhhcC
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS------SEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~------~~~a~~~l~~l~~~l~~~  128 (281)
                      .+++.+|.++..+|++.+|+..|++++.+.+.      ...+...++.+...++..
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            57777777777777777777777777776332      244555566665555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.02  E-value=4e-09  Score=80.83  Aligned_cols=81  Identities=19%  Similarity=0.057  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS---EVYQNLQA  119 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~---~~a~~~l~  119 (281)
                      +++++|.+++..|+|.+|+..|.+++..+|.+.   .+++.+|.+++.+|++.+|+..|++++.++|++   ..+...++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            478899999999999999999999999999988   899999999999999999999999999999999   88888888


Q ss_pred             HHHHHhh
Q 023491          120 RLKTQLS  126 (281)
Q Consensus       120 ~l~~~l~  126 (281)
                      .+...++
T Consensus        84 ~~~~~~g   90 (129)
T 2xev_A           84 LSQYGEG   90 (129)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8876654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=4e-09  Score=82.08  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=81.9

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      .+..+..++.+|.+++..|+|.+|+..|.+++.++|.+   ..+++++|.++..+|++.+|+..|++++.++|.+..++.
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            56788999999999999999999999999999999987   899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 023491          117 LQARLKTQLSL  127 (281)
Q Consensus       117 ~l~~l~~~l~~  127 (281)
                      .++.+...++.
T Consensus       104 ~~a~~~~~~~~  114 (148)
T 2dba_A          104 RRSQALEKLGR  114 (148)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHcCC
Confidence            88888776543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.00  E-value=5.8e-09  Score=101.25  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----DYNHT   78 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----~p~~~   78 (281)
                      ..++.+..+..+|+|++|+.+|.++|.+..     .+|..+..+.|+|.+|..+|+|++|+..|.++|.+     .++++
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            345566677889999999999999998754     67788999999999999999999999999999977     35554


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Q 023491           79 ---GALMLRAQTLVTLKEYNSALFDVNRLIEL-----NPSSEVYQNLQARLK  122 (281)
Q Consensus        79 ---~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-----dP~~~~a~~~l~~l~  122 (281)
                         ..+.+||.+|..+|+|++|+..|++||.+     .|+++.+...+..+.
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM  442 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence               57999999999999999999999999985     678777666554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.00  E-value=1.1e-09  Score=91.02  Aligned_cols=73  Identities=18%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-----------CHH
Q 023491            3 SPAAPANKIERAHQLYRDGRY----------EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-----------DFK   61 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy----------~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-----------~y~   61 (281)
                      +|.+++.+++.|.++...+++          ++|+..|+++|.+   +|....+|+++|.+|+.+|           +|+
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            699999999999999998875          5999999999999   9999999999999999885           899


Q ss_pred             HHHHHHHHHHHhcCCCH
Q 023491           62 KAAEECTSVLELDYNHT   78 (281)
Q Consensus        62 ~Ai~~~~~al~i~p~~~   78 (281)
                      +|+.+|.+|++++|++.
T Consensus       109 eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          109 LATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            99999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.99  E-value=1.5e-09  Score=101.12  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |.++..+.++|.+++..|+|.+|+.+|.++|.+   +|..+.+++++|.+|+.+|+|++|+.+|.++++++|.+..++..
T Consensus       270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~  346 (370)
T 1ihg_A          270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  346 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            456788999999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 023491           84 RAQTLVTLKEYNSALFD  100 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~  100 (281)
                      ++.++..++++.+|...
T Consensus       347 l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          347 LLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999888654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.99  E-value=4.6e-09  Score=100.42  Aligned_cols=111  Identities=7%  Similarity=0.057  Sum_probs=93.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCCH---
Q 023491           12 ERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----DYNHT---   78 (281)
Q Consensus        12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----~p~~~---   78 (281)
                      +.+......|+|++|+.+|.++|.+..     .+|..+..+.|+|.+|..+|+|++|+..|.++|.+     .++++   
T Consensus       303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  382 (433)
T 3qww_A          303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA  382 (433)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            334444556899999999999998753     67788899999999999999999999999999977     34554   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Q 023491           79 GALMLRAQTLVTLKEYNSALFDVNRLIEL-----NPSSEVYQNLQARLK  122 (281)
Q Consensus        79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-----dP~~~~a~~~l~~l~  122 (281)
                      ..|++||.+|..+|+|++|+..|++|+.+     .|+++.+..+...|.
T Consensus       383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            57999999999999999999999999996     688888877666553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=4.1e-09  Score=80.21  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=75.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTG   79 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~   79 (281)
                      .+|.++..++..|.+++..|+|.+|+..|.+++.+   +|....+++++|.+|+.+|++++|+..|.+++.+.|.  +..
T Consensus        14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (115)
T 2kat_A           14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ   90 (115)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHH
Confidence            36889999999999999999999999999999999   9999999999999999999999999999999999874  444


Q ss_pred             HHHHHHHHHHHc
Q 023491           80 ALMLRAQTLVTL   91 (281)
Q Consensus        80 a~~~lg~a~~~~   91 (281)
                      ++..+..++..+
T Consensus        91 ~~~~l~~~l~~l  102 (115)
T 2kat_A           91 VVKELQVFLRRL  102 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555554444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=3.8e-09  Score=91.92  Aligned_cols=119  Identities=18%  Similarity=0.109  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------   77 (281)
                      +..+...|.+++..|++++|+.+|.+++.+.+.   ......+++++|.+++.+|++++|+..|.+++.+.+..      
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  262 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE  262 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence            457888999999999999999999999988552   22345589999999999999999999999999887655      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQNLQARLKTQL  125 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~~l~~l~~~l  125 (281)
                      ..+++.+|.++..+|++++|+..|++++.+.+..      ..+...++.+...+
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            7789999999999999999999999999986542      23455555555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=2.9e-09  Score=90.67  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH----DFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg----~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      .++.+++.+|..++..+++.+|+.+|++++..     .++.+++++|.+|+. +    ++.+|+.+|.+++.  +.++.+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHH
Confidence            46778888888888888888888888888764     356777777777776 5    77777777777743  457777


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Q 023491           81 LMLRAQTLVT----LKEYNSALFDVNRLIELNP--SSEVYQNLQARLKTQ  124 (281)
Q Consensus        81 ~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP--~~~~a~~~l~~l~~~  124 (281)
                      ++++|.+|..    .+++..|+.+|++++++.+  .++.+..+++.+...
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            7777777776    6777777777777777766  246666666666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.98  E-value=4.7e-09  Score=97.79  Aligned_cols=119  Identities=13%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRD-G-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK--------KAAEECTSVLE   72 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~-g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~--------~Ai~~~~~al~   72 (281)
                      +|.+..++..++.++... + ++.+++.++.++|..   +|.+..+|+.|+.++.++|.+.        +++..+.++|+
T Consensus       119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            445555555555555444 4 455555555555554   5555555555555555555554        55555555555


Q ss_pred             hcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           73 LDYNHTGALMLRAQTLVTLKE-------YNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        73 i~p~~~~a~~~lg~a~~~~g~-------~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ++|.+..+|..++.++..++.       +++++.++.+++.++|+|..++..+..+...
T Consensus       196 ~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          196 VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            555555555555555555554       4555555555555555555555555544444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=4.1e-09  Score=89.79  Aligned_cols=115  Identities=12%  Similarity=-0.044  Sum_probs=99.1

Q ss_pred             CCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q 023491            4 PAAPANKIERAHQLYRDG----RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDY   75 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~g----dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p   75 (281)
                      ..++.+++.+|..++. +    ++.+|+.+|.+++..     .++.+++++|.+|+.    .+++.+|+.+|.+++...+
T Consensus        47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            3577888999999887 6    899999999999664     578889999999988    8899999999999998887


Q ss_pred             --CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           76 --NHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        76 --~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                        .++.++++||.+|..    .+++..|+.+|++++.+ +++..+..+++.+....
T Consensus       121 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          121 SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence              358999999999999    88999999999999998 67777888888877553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=5.1e-09  Score=97.51  Aligned_cols=122  Identities=13%  Similarity=0.001  Sum_probs=114.4

Q ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCHH
Q 023491            3 SPAAPANKIERAHQLYRDG-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL-H-DFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl-g-~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      +|.+..++..++.++...| .+.+++.++..+|..   +|.+..+|+.|+.++.++ + ++.+++..|.++|.++|.+..
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~  160 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH  160 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence            7899999999999999999 599999999999998   999999999999999998 8 999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           80 ALMLRAQTLVTLKEYN--------SALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~--------eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|+.++.++..+|.+.        +++.++.++++++|.|-.++..+..+...+..
T Consensus       161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999888        99999999999999999999999988766643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=1.6e-09  Score=98.98  Aligned_cols=121  Identities=18%  Similarity=0.151  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-----   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-----   77 (281)
                      .+..+...|.+++..|+|++|+.+|.+++.+.+..   .....+++++|.+|+.+|++++|+..|.+++.+.+..     
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  301 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV  301 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            35578899999999999999999999999985421   2234589999999999999999999999999988754     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhh
Q 023491           78 -TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS------EVYQNLQARLKTQLS  126 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~------~~a~~~l~~l~~~l~  126 (281)
                       ..+++.+|.++..+|++++|+..|++++.+.+..      ..+...++.+...++
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence             6789999999999999999999999999986542      335555665555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.96  E-value=5.2e-09  Score=79.16  Aligned_cols=84  Identities=14%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-------EVYQ  115 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~-------~~a~  115 (281)
                      .+..++.+|.+++..|+|++|+..|.+++.++|.++.+++++|.++..+|++.+|+..|++++.+.|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467789999999999999999999999999999999999999999999999999999999999998876       7777


Q ss_pred             HHHHHHHHHhh
Q 023491          116 NLQARLKTQLS  126 (281)
Q Consensus       116 ~~l~~l~~~l~  126 (281)
                      ..++.+...++
T Consensus        83 ~~la~~~~~~~   93 (131)
T 1elr_A           83 ARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            77777766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.95  E-value=1e-08  Score=78.18  Aligned_cols=80  Identities=11%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELD-------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ  118 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~-------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l  118 (281)
                      -++.+|..++..|+|..|+.+|..|+...       .....++..+|.+++++|++..|+..++++++++|++..+..++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            34445555555555555555555555432       23455666777777777777777777777777777776666666


Q ss_pred             HHHHHHh
Q 023491          119 ARLKTQL  125 (281)
Q Consensus       119 ~~l~~~l  125 (281)
                      ..++..+
T Consensus        87 ~~~~~~~   93 (104)
T 2v5f_A           87 KYFEYIM   93 (104)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.94  E-value=6.4e-09  Score=78.51  Aligned_cols=83  Identities=14%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHD---FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~---y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      +|.++.+++.+|.+++..++   ..+|...+.+++.++|+++.+++.+|.+++..|+|.+|+..|++++..+|..+....
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~   81 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT   81 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            67888999999999987666   799999999999999999999999999999999999999999999999998544444


Q ss_pred             HHHHHH
Q 023491          117 LQARLK  122 (281)
Q Consensus       117 ~l~~l~  122 (281)
                      ....|.
T Consensus        82 i~~~I~   87 (93)
T 3bee_A           82 IIESIN   87 (93)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=8.6e-09  Score=84.65  Aligned_cols=104  Identities=13%  Similarity=-0.003  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CC--
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ----QKIALHSNRAACYLKLHDFKKAAEECTSVLELDY--NH--   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p----~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p--~~--   77 (281)
                      .+..+...|.+++..|+|.+|+.+|.+++.+....+    ....+++++|.+++.+|++++|+..|.+++.+.+  .+  
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  144 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV  144 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence            466788999999999999999999999999865332    4577899999999999999999999999997643  22  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           78 --TGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        78 --~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                        ..++.++|.++..+|++++|+..|++++.+..
T Consensus       145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence              24678999999999999999999999999854

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.90  E-value=2e-08  Score=95.74  Aligned_cols=116  Identities=12%  Similarity=0.146  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVA-----KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----YNHT   78 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-----~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----p~~~   78 (281)
                      ........+..+|+|++|+..|.++|...     +.+|..+..+.++|.+|..+|+|++|+..|.++|.+.     +.++
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            34455567788999999999999999764     2677789999999999999999999999999998773     4554


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Q 023491           79 ---GALMLRAQTLVTLKEYNSALFDVNRLIEL-----NPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        79 ---~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-----dP~~~~a~~~l~~l~~~  124 (281)
                         ..+++||.+|..+|+|++|+..|++|+.+     .|+++.+...+..+...
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence               57999999999999999999999999986     67887777665554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.90  E-value=1.7e-08  Score=96.96  Aligned_cols=118  Identities=9%  Similarity=-0.060  Sum_probs=102.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI-ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~-~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.++..++..|..+...|++++|..+|.+++..   .|.++ .+|.++|.++.+.|+++.|+..|.+++...|.....+
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~  393 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  393 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence            6889999999999999999999999999999998   77764 5899999999999999999999999999888887777


Q ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           82 MLRAQT-LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        82 ~~lg~a-~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +..|.+ +...|+++.|+..|++++++.|++..++..+..+..
T Consensus       394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            776665 346899999999999999999998888877766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.90  E-value=2.6e-08  Score=75.94  Aligned_cols=82  Identities=18%  Similarity=0.119  Sum_probs=74.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI----KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      .+++..++..|..+|..|+|..|+..|..|+.....    ......++.++|.|++++|+++.|+..+.+++.++|++..
T Consensus         2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            478999999999999999999999999999997542    2356889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 023491           80 ALMLRA   85 (281)
Q Consensus        80 a~~~lg   85 (281)
                      ++.+++
T Consensus        82 ~~~n~~   87 (104)
T 2v5f_A           82 ANGNLK   87 (104)
T ss_dssp             HHHHHH
T ss_pred             HHhhHH
Confidence            988887

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.80  E-value=4.4e-08  Score=94.03  Aligned_cols=112  Identities=14%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hhhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYR-------DGRYE-------EALGFYTEALS-VAKIKQQKIALHSNRAACYLKLHDFKKAAEEC   67 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~-------~gdy~-------eAl~~y~~aL~-~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~   67 (281)
                      +|.++..|+..|..+..       .|++.       +|+..|.+++. +   .|....+++++|.++.+.|++++|+..|
T Consensus       268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---~p~~~~l~~~~~~~~~~~g~~~~A~~~~  344 (530)
T 2ooe_A          268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---LKKNMLLYFAYADYEESRMKYEKVHSIY  344 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            47899999999999886       79987       99999999997 7   7889999999999999999999999999


Q ss_pred             HHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           68 TSVLELDYNHT-GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        68 ~~al~i~p~~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                      .+++.+.|.++ .+|..+|.++.+.|+++.|+..|++|++..|....+...
T Consensus       345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             HHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence            99999999885 699999999999999999999999999998876554443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.79  E-value=1.4e-07  Score=85.39  Aligned_cols=116  Identities=14%  Similarity=0.035  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCC
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELD--------YNH   77 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--------p~~   77 (281)
                      .+...|..++..|+|++|+..|.+++.+.+...   ....+++++|.+++..|+|.+|+..|.+++.+.        +..
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            567788888899999999999999988755222   224557889999999999999999999988875        234


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS-----EVYQNLQARLKTQ  124 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~-----~~a~~~l~~l~~~  124 (281)
                      ..++.++|.+++..|++++|+..|++++.+.+..     ..+...++.+...
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  186 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA  186 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999999887752     2344444444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=2e-08  Score=90.95  Aligned_cols=117  Identities=11%  Similarity=0.043  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRA   85 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg   85 (281)
                      ......|..+...|+|++|...|..++..   .|... +++.+|.++++.++|.+|+..|..++......  ..+++++|
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG  178 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVA---GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG  178 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence            45567889999999999999999999887   88888 99999999999999999999999886653222  35899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhhcC
Q 023491           86 QTLVTLKEYNSALFDVNRLIELN--PS-SEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ld--P~-~~~a~~~l~~l~~~l~~~  128 (281)
                      .++..+|++++|+.+|++++...  |. ...+...++.+...++..
T Consensus       179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999998654  54 556778888887776644

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.75  E-value=1.2e-07  Score=75.61  Aligned_cols=98  Identities=13%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      +|..++..+.+.+|+.+|.+++..     .++.+++++|.+|+.    .+++.+|+.+|+++.+.  .++.+++++|.+|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y  103 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  103 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            788888888899999999999886     467899999999999    89999999999999876  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           89 VT----LKEYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        89 ~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      ..    .+++..|+.+|+++.++  ++..+..+++
T Consensus       104 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          104 YAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            99    99999999999999988  4555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.70  E-value=1.7e-07  Score=74.78  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHH
Q 023491           21 GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK---AAEECTSVLELD-Y-NHTGALMLRAQTLVTLKEYN   95 (281)
Q Consensus        21 gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~---Ai~~~~~al~i~-p-~~~~a~~~lg~a~~~~g~~~   95 (281)
                      .....+...|...+..   ++....+.|++|.|+.+...-..   +|..++.+++.+ | ..-.++|.+|..++++|+|.
T Consensus        15 ~~l~~~~~~y~~e~~~---~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            3455566677777776   77889999999999999887666   999999998876 4 46679999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           96 SALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        96 eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .|+.+++.+|++.|+|..+..+...|...+..
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.69  E-value=3.3e-08  Score=95.91  Aligned_cols=106  Identities=12%  Similarity=-0.002  Sum_probs=93.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----   73 (281)
                      +|..+..+.++|..|..+|+|++|+.+|.++|.+..     .+|..+..++|+|.+|..+|+|++|+..|.+|+.+    
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            456678889999999999999999999999998763     77888999999999999999999999999999876    


Q ss_pred             -cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           74 -DYNHT---GALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        74 -~p~~~---~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                       .++++   ..+-+++.++..++.|++|...|+++.+-.
T Consensus       427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46665   467788999999999999999999886543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=2.2e-07  Score=84.18  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKI-----KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----H   77 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~-----~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----~   77 (281)
                      ..+...|..++..|+|.+|+.+|.+++.....     .+....++.++|.+++.+|++++|+..|.+++.+.+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            44678999999999999999999999998641     1456778899999999999999999999999998875     3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      ..+++.+|.++...|++.+|+..|++++.+.+
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999999998843

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.65  E-value=1.6e-07  Score=89.15  Aligned_cols=108  Identities=14%  Similarity=0.090  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 023491            6 APANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~   78 (281)
                      ++.+++.+|..++..|   ++.+|+.+|.+++..     .++.+++++|.+|+.    .+++.+|+.+|.++++.  .++
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~  399 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLS  399 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCH
Confidence            3445555565555544   556666666666553     245666667766666    66777777777776654  356


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 023491           79 GALMLRAQTLVT----LKEYNSALFDVNRLIELNPS---SEVYQNLQAR  120 (281)
Q Consensus        79 ~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~---~~~a~~~l~~  120 (281)
                      .+++++|.+|..    .+++.+|+.+|++++.++|+   +..+..+++.
T Consensus       400 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            667777777766    66777777777777776633   5555444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.60  E-value=1.2e-06  Score=82.99  Aligned_cols=111  Identities=8%  Similarity=-0.014  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC
Q 023491            4 PAAPANKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDY   75 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p   75 (281)
                      +.++.+++..|..++.    .+++.+|+..|.+++..     .++.+++.+|.+|+.    .+++.+|+.+|.+++..  
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  108 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--  108 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            3466677777777776    67777777777777664     345667777777777    67777777777777654  


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           76 NHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .++.+++++|.+|..    .+++.+|+.+|++++..  ++..+...++.+..
T Consensus       109 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          109 GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            466677777777766    66777777777776654  45556666665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.59  E-value=3e-07  Score=69.23  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491            3 SPAAPANKIERAHQLYRDGR---YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gd---y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +|.++..+...|.+++..++   ..+|..+|.++|.+   +|.+..+++.+|..+++.|+|.+|+..+++++..+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68999999999999987766   79999999999999   99999999999999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.58  E-value=2.9e-07  Score=87.39  Aligned_cols=110  Identities=13%  Similarity=-0.027  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCH
Q 023491            6 APANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL----HDFKKAAEECTSVLELDYNHT   78 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl----g~y~~Ai~~~~~al~i~p~~~   78 (281)
                      ++.+++.+|..+...|   ++.+|+..|.+++..   .+..+.+++++|.+|...    +++.+|+.+|.++.   +.++
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~  248 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP  248 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH
Confidence            4446777888888888   888888888888877   677777667777777554    56777777777765   5666


Q ss_pred             HHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           79 GALMLRAQT-L--VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        79 ~a~~~lg~a-~--~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .+++++|.+ +  ...+++.+|+.+|+++++.  ++..+..+++.+..
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            666777666 3  3456666666666666644  35556666655554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=8.4e-07  Score=73.09  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcC-c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491            3 SPAAPANKIERAHQLYRDG---RYEEALGFYTEALSVAKIK-Q-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~-p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      ++.+.+..++.|.++.+.+   ++.+++.+|+..+..   + | ....++|++|..|+++|+|.+|+.+|+.+|+++|+|
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            5678999999999999988   778999999999998   6 6 568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023491           78 TGALMLRAQTL   88 (281)
Q Consensus        78 ~~a~~~lg~a~   88 (281)
                      ..+...+-.+-
T Consensus       105 ~QA~~Lk~~ie  115 (152)
T 1pc2_A          105 NQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99877766554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.50  E-value=2.9e-06  Score=79.43  Aligned_cols=105  Identities=12%  Similarity=0.078  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhcCcccHHHHHH---------------------------------
Q 023491            6 APANKIERAHQLYRDGR---YEEALGFYTEALSVAKIKQQKIALHSN---------------------------------   49 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gd---y~eAl~~y~~aL~~~~~~p~~~~a~~n---------------------------------   49 (281)
                      ++-.++.+|..++..+.   +.+|+.+|++||.+   +|..+.++..                                 
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            34455677777776544   47788888888887   6655555543                                 


Q ss_pred             -----------HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           50 -----------RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        50 -----------ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                                 +|.+++..|+++.|+..+.+++.++| +..+|..+|.++...|++++|+..|.+|+.++|..+..
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence                       44445557999999999999999996 57788899999999999999999999999999987643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.43  E-value=1.4e-06  Score=82.73  Aligned_cols=109  Identities=16%  Similarity=0.042  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcC
Q 023491            4 PAAPANKIERAHQL---YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-----DFKKAAEECTSVLELDY   75 (281)
Q Consensus         4 P~~a~~l~~~G~~~---~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-----~y~~Ai~~~~~al~i~p   75 (281)
                      |.++.+++.+|..+   ...+++.+|+.+|.+++..   .  ++.+++++|.+|+ .|     ++.+|+.+|.+++   +
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~  315 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---G  315 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---T
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---C
Confidence            55777888888884   4578999999999998875   3  6888899999888 55     8999999999988   8


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           76 NHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        76 ~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .++.+++++|.+|..    ..++.+|+.+|+++.+.  ++..+..+++.+..
T Consensus       316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS  365 (452)
T ss_dssp             TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            889999999988876    44899999999988764  45566666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.37  E-value=3.6e-06  Score=66.92  Aligned_cols=93  Identities=11%  Similarity=0.003  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHH
Q 023491           21 GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT----LKEYNS   96 (281)
Q Consensus        21 gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~----~g~~~e   96 (281)
                      +++.+|+.+|.++...   ....+.    +|.+|+..+.+.+|+.+|.++...  .++.+++++|.+|..    .+++..
T Consensus         9 ~d~~~A~~~~~~aa~~---g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL---NEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHT---TCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcC---CCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            5789999999999997   543333    999999999999999999999886  689999999999999    899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           97 ALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |+.+|+++.+.  +++.+..+++.+...
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999999987  788899999888765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.34  E-value=4.2e-06  Score=67.18  Aligned_cols=87  Identities=17%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           40 KQQKIALHSNRAACYLKLHD---FKKAAEECTSVLELDYN-HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        40 ~p~~~~a~~nra~~~~klg~---y~~Ai~~~~~al~i~p~-~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      ....+.+.|++|.|+.+...   ..++|..++.+++..|. .-.++|.+|..++++|+|..|+.+.+.+|++.|+|..+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            55677889999999998775   45799999999998884 578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 023491          116 NLQARLKTQLS  126 (281)
Q Consensus       116 ~~l~~l~~~l~  126 (281)
                      .+...|...+.
T Consensus       116 ~Lk~~Ie~ki~  126 (134)
T 3o48_A          116 ALKSMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.30  E-value=2e-05  Score=63.99  Aligned_cols=88  Identities=17%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           41 QQKIALHSNRAACYLKLHD---FKKAAEECTSVLELDYN-HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        41 p~~~~a~~nra~~~~klg~---y~~Ai~~~~~al~i~p~-~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      .....+.|++|.|+.+...   ..++|..++.+++..|. .-.++|.+|..++++|+|..|+.+.+.+|++.|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4578888999999998775   45799999999998884 5679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 023491          117 LQARLKTQLSLA  128 (281)
Q Consensus       117 ~l~~l~~~l~~~  128 (281)
                      +...|...+...
T Consensus       116 Lk~~Ie~~i~kd  127 (144)
T 1y8m_A          116 LKSMVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999887644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=4.9e-06  Score=76.36  Aligned_cols=103  Identities=12%  Similarity=0.052  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------hh---cCccc
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSV----------------------------------------AK---IKQQK   43 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~----------------------------------------~~---~~p~~   43 (281)
                      ..++...|..++..|+|++|+.+|.+++.+                                        ..   .....
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            345566666777777776666666665443                                        11   22344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELD------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      +.++.++|.+|+.+|+|.+|+..+..++...      +....++..+|.+|..+|+|..|...|++++.+.+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            7788999999999999999999999998762      33457899999999999999999999999998754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.21  E-value=2.2e-05  Score=71.77  Aligned_cols=112  Identities=11%  Similarity=0.019  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ--QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----HT   78 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p--~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~~   78 (281)
                      .+...++..|..++..|++++|+..+.+.|..   ++  ....++..++.+++++|+++.|.+.+.++.+.+|+    .-
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~---~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d  174 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDN---DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN  174 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch
Confidence            34556678999999999999999999999887   65  78999999999999999999999999999999883    22


Q ss_pred             HHHHHH--HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491           79 GALMLR--AQTLVTLK--EYNSALFDVNRLIELNPSSEVYQNLQA  119 (281)
Q Consensus        79 ~a~~~l--g~a~~~~g--~~~eAl~~~ekAL~ldP~~~~a~~~l~  119 (281)
                      ..+..+  |.+.+..|  ++++|+..|++++...|++.....++.
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln  219 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN  219 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence            333444  54466666  999999999999888887444333343

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=1.1e-05  Score=74.09  Aligned_cols=102  Identities=18%  Similarity=0.183  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC--
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY---NH--   77 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p---~~--   77 (281)
                      -+..+...|..++..|+|.+|+.++.+++....   ..+....++.++|.+|+.+|+|.+|...|.+++.+.+   ..  
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            356778899999999999999999999988754   3456688999999999999999999999999987753   22  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           78 --TGALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        78 --~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                        ...+..+|.++...|+|..|..+|..+++.
T Consensus       214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence              356788899999999999999999999875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.18  E-value=5e-06  Score=75.36  Aligned_cols=105  Identities=11%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhhhcCcc--cHHHHHHHHHHHHHc-----CCHHHHH
Q 023491            3 SPAAPANKIERAHQLYR-----DG------RYEEALGFYTEALSVAKIKQQ--KIALHSNRAACYLKL-----HDFKKAA   64 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~-----~g------dy~eAl~~y~~aL~~~~~~p~--~~~a~~nra~~~~kl-----g~y~~Ai   64 (281)
                      +|.+++.++=.|.....     .|      ....|...++++|.+   +|.  +..+|..+|..|++.     |+.++|.
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~  224 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH  224 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence            46677777766655533     13      347888999999999   988  677999999999995     9999999


Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Q 023491           65 EECTSVLELDYNH-TGALMLRAQTLVT-LKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        65 ~~~~~al~i~p~~-~~a~~~lg~a~~~-~g~~~eAl~~~ekAL~ldP~  110 (281)
                      .+|+++|+++|+. ..+++..|..++. .|+++.|...++++|..+|.
T Consensus       225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9999999999975 9999999999988 59999999999999998776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.14  E-value=1.7e-05  Score=84.93  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----------
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY----------   75 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p----------   75 (281)
                      +...+...|..++..|+|.+|+.+|..+-           .|..+|.||.++|+|+.|++.+.++.....          
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            44567789999999999999999999963           478899999999999999999999843332          


Q ss_pred             ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           76 ---------------NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        76 ---------------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                                     .++..+..++..|..+|.|++|+..|+.+|.+++.+..+...++.+..+
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence                           2444566778889999999999999999999999888888777766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.10  E-value=2.9e-05  Score=71.01  Aligned_cols=116  Identities=7%  Similarity=-0.075  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc------ccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ------QKIALHSNRAACYLKLH--DFKKAAEECTSVLELDYN   76 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p------~~~~a~~nra~~~~klg--~y~~Ai~~~~~al~i~p~   76 (281)
                      .+.+.....+.+++++|+.+.|.+.+.+....   +|      ....+.+.-|.+.+..|  ++..|...|..+....|+
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            67888889999999999999999999999887   76      23333333355566667  999999999999887776


Q ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhh
Q 023491           77 H--TGALMLRAQTLVTLKEYNSALFDVNRLIEL----------NPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        77 ~--~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l----------dP~~~~a~~~l~~l~~~l~  126 (281)
                      +  ...+++   ++.++|+|.+|...++.++++          +|+++.+..++..+-..++
T Consensus       211 ~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          211 WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            3  334444   999999999999999988877          5889999888877766665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.09  E-value=7.4e-06  Score=78.45  Aligned_cols=102  Identities=13%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH-----
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM-----   82 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~-----   82 (281)
                      ..+...|..++..|.|++|+.+|..+           ..|.++|.|+.++|+|++|+..|.++     .++.+|.     
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a  186 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA  186 (449)
T ss_dssp             --------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence            48889999999999999999999976           24788999999999999999999998     3443333     


Q ss_pred             -------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 -------------------------LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 -------------------------~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                                               .+..+|.+.|++.+|+..|+++|.+++.+..+...++.+..+.
T Consensus       187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                                     3446788889999999999999999999988888877665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.07  E-value=6.6e-06  Score=78.29  Aligned_cols=89  Identities=12%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----   73 (281)
                      +|..+..+.+.|..|..+|+|++|+.+|.++|.+..     .+|..+..++|+|.+|..+|+|++|+..|.+|+.+    
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            455677888999999999999999999999998763     77888999999999999999999999999999877    


Q ss_pred             -cCCCHH---HHHHHHHHHHHc
Q 023491           74 -DYNHTG---ALMLRAQTLVTL   91 (281)
Q Consensus        74 -~p~~~~---a~~~lg~a~~~~   91 (281)
                       .|+++.   .+.+|+.++..+
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHH
Confidence             466664   455566665443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.03  E-value=2e-05  Score=75.13  Aligned_cols=78  Identities=8%  Similarity=0.024  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----   73 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----   73 (281)
                      +|..+..+.++|..|..+|+|++|+.+|.++|.+..     .+|..+..++|+|.+|..+|+|++|+..|.+|+.+    
T Consensus       336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            455677888999999999999999999999998864     67888999999999999999999999999999877    


Q ss_pred             -cCCCHHH
Q 023491           74 -DYNHTGA   80 (281)
Q Consensus        74 -~p~~~~a   80 (281)
                       .|+++..
T Consensus       416 lG~~Hp~~  423 (433)
T 3qww_A          416 HGKDHPYI  423 (433)
T ss_dssp             TCTTCHHH
T ss_pred             cCCCChHH
Confidence             4667654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.92  E-value=0.00019  Score=59.65  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC-
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ------KIALHSNRAACYLKLHDFKKAAEECTSVLELDY---NH-   77 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~------~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p---~~-   77 (281)
                      ..+++....++..|.|+.|+-+...++.+...++.      ...+++.+|.++|..++|..|...|.++|.+..   .+ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35788899999999999999999998888653333      366889999999999999999999999876532   11 


Q ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           78 ---------------------TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        78 ---------------------~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                                           .++-|.+|.||..+|++.+|+..++..-. .-..+.+-..++++
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence                                 16789999999999999999998764211 11345565666555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.90  E-value=8.4e-05  Score=79.67  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhh-------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAK-------------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~-------------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      .|..+...|.|++|..+|.++-....                   .......+|+++|.++...|++.+|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            47888888888888888777532110                   23466889999999999999999999999887   


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                        +++.+|+.+|.++.++|+|++|+++|..|++..+.
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence              89999999999999999999999999999998854

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.90  E-value=9.1e-05  Score=58.95  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=71.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhcC-c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491            3 SPAAPANKIERAHQLYRDGRYEE---ALGFYTEALSVAKIK-Q-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~e---Al~~y~~aL~~~~~~-p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      ++.+.+..++.|.++.+......   +|.++...+..   + | ..-.++|.+|..++++|+|.+|+.+|..+|++.|.+
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            35678899999999999887766   99999998886   5 4 567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023491           78 TGALMLRAQTL   88 (281)
Q Consensus        78 ~~a~~~lg~a~   88 (281)
                      ..+.-+...+-
T Consensus       108 ~QA~~Lk~~i~  118 (126)
T 1nzn_A          108 NQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99877766554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.67  E-value=0.0012  Score=54.17  Aligned_cols=113  Identities=9%  Similarity=0.004  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            2 ASPAAPANKIERAHQLYRDGRY------EEALGFYTEALSVAKIK-----QQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         2 a~P~~a~~l~~~G~~~~~~gdy------~eAl~~y~~aL~~~~~~-----p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      =+|.+.+.|.......-+.|+.      ..-+..|++|+...|..     ...+.+|.+.|.. ..+++.+.|...|..+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3688999999999888888999      88999999999986522     2335556655533 6779999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           71 LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        71 l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      +.++..++..|...|..-.+.|++..|.+.+.+|+-+.|...++.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            999888999999999999999999999999999999999866543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.59  E-value=0.00068  Score=54.32  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            6 APANKIERAHQLYRDGRY---EEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy---~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +++..++.|.++.+...-   ..+|.+++..+..   +| ..-.++|.+|..++++|+|..|..++..+|++.|.+..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            678889999999988654   5799999998886   66 4678889999999999999999999999999999999987


Q ss_pred             HHHHHHHH
Q 023491           82 MLRAQTLV   89 (281)
Q Consensus        82 ~~lg~a~~   89 (281)
                      -+...+--
T Consensus       116 ~Lk~~Ie~  123 (134)
T 3o48_A          116 ALKSMVED  123 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.47  E-value=0.0015  Score=52.87  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491            4 PAAPANKIERAHQLYRDGRY---EEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG   79 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy---~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~   79 (281)
                      ..+++..|+.|.++.+...-   ..++.+++..+..   .| ..-.++|.+|..++++|+|.+|..++..+|++.|++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            35788899999999998755   5789999998886   65 46778899999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 023491           80 ALMLRAQTL   88 (281)
Q Consensus        80 a~~~lg~a~   88 (281)
                      +.-+...+-
T Consensus       113 A~~Lk~~Ie  121 (144)
T 1y8m_A          113 VGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.46  E-value=0.0014  Score=59.25  Aligned_cols=82  Identities=9%  Similarity=-0.048  Sum_probs=65.8

Q ss_pred             cCcccHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 023491           39 IKQQKIALHSNRAACYLK---L--H------DFKKAAEECTSVLELDYN--HTGALMLRAQTLVTL-----KEYNSALFD  100 (281)
Q Consensus        39 ~~p~~~~a~~nra~~~~k---l--g------~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~~~~-----g~~~eAl~~  100 (281)
                      .++.+..+++-.|.++..   .  |      ....|...++++|+++|+  +..+|..+|.+|...     |+.+.|.++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            456677888877777654   2  2      267899999999999999  567999999999996     999999999


Q ss_pred             HHHHHHhCCCC-HHHHHHHHH
Q 023491          101 VNRLIELNPSS-EVYQNLQAR  120 (281)
Q Consensus       101 ~ekAL~ldP~~-~~a~~~l~~  120 (281)
                      |++||+++|+. ......++.
T Consensus       227 ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHHhCCCCCchHHHHHHH
Confidence            99999999974 555544443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.44  E-value=0.00012  Score=70.15  Aligned_cols=90  Identities=20%  Similarity=0.182  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------------cCcccHHHHHHHHHHHHHcCCH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK-------------------------IKQQKIALHSNRAACYLKLHDF   60 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------------------~~p~~~~a~~nra~~~~klg~y   60 (281)
                      +...+...+..+...|+|++|+.+|..+++..+                         ..| +..++.++|.+++..|.|
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p-n~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP-NNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTTCC-----------------CT
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC-cHHHHHHHHHHHHHcCCH
Confidence            334555666666666777777776666653310                         122 234888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           61 KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        61 ~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      ++|+..|.++        ..|..+|.+++++|+|++|+.+|+++
T Consensus       139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            9999999877        47889999999999999999999999

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.34  E-value=0.00062  Score=63.60  Aligned_cols=79  Identities=10%  Similarity=0.002  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      .|.++..+...|..++..|++++|+..+.+|+.+   ++ +..+|..+|.++.-.|++++|+..|.+|++++|... .|+
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~  347 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY  347 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence            4778888888898899999999999999999999   75 477888999999999999999999999999999664 555


Q ss_pred             HHHH
Q 023491           83 LRAQ   86 (281)
Q Consensus        83 ~lg~   86 (281)
                      ...+
T Consensus       348 ~~~~  351 (372)
T 3ly7_A          348 WIEN  351 (372)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            4443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.33  E-value=0.001  Score=55.31  Aligned_cols=81  Identities=25%  Similarity=0.242  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----------------------CcccHHHHHHHHHHHHHcCCHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKI----------------------KQQKIALHSNRAACYLKLHDFKKAA   64 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----------------------~p~~~~a~~nra~~~~klg~y~~Ai   64 (281)
                      ++.+...|+.+|..|+|..|...|.++|.....                      .+.+..+.|.+|.||.+++++.+|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            457788999999999999999999999887541                      1122478899999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHH
Q 023491           65 EECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus        65 ~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      ..++.+- ..-..++.-+.||..|
T Consensus       143 ~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          143 AILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHhcCC-chhcCHHHHHHHHHHh
Confidence            9987642 2336888888888776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.32  E-value=0.0018  Score=65.04  Aligned_cols=75  Identities=7%  Similarity=-0.028  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLEL-DYNHTGALMLRAQTLVTLKE-YNSALFDVNRLIELNPSSEVYQNLQAR  120 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~~~a~~~lg~a~~~~g~-~~eAl~~~ekAL~ldP~~~~a~~~l~~  120 (281)
                      +|...+.+..+.|..+.|...|.+|+.. .+.....|...|.+....++ ++.|...|+++|+..|++..++.....
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3444444444455555555555555544 22334444444444444433 566666666666666665555433333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.14  E-value=0.0056  Score=61.43  Aligned_cols=99  Identities=10%  Similarity=-0.053  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      .|+..+....+.|....|..+|.+|+...  .+....+|...|...++.+ +++.|...|+.+++..|+.+..+...+..
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~--~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLK--KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTG--GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            34444444444555555555555555430  1122344444444444443 36666666666666666666655555665


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC
Q 023491           88 LVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      ....|+...|...|++|+...|
T Consensus       514 e~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          514 LIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHhCCCHHHHHHHHHHHHHhcC
Confidence            6666666666666666666655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.13  E-value=0.0059  Score=56.96  Aligned_cols=112  Identities=14%  Similarity=0.104  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK-------------------QQKIALHSNRAACYLKLHDFKKAAEECTS   69 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-------------------p~~~~a~~nra~~~~klg~y~~Ai~~~~~   69 (281)
                      .+...|......|+...|+..|.+|+.+....                   .....+...++.+++.+|++..|+..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34456666777899999999999999875311                   11223445677888899999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHH
Q 023491           70 VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL-------NPSSEVYQNLQARL  121 (281)
Q Consensus        70 al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-------dP~~~~a~~~l~~l  121 (281)
                      ++..+|-+-.+|..+-.+|+..|+..+|+..|+++...       .| .+..+.+...|
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~i  254 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERI  254 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence            99999999999999999999999999999999988663       34 34455554444

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.89  E-value=0.03  Score=46.98  Aligned_cols=100  Identities=20%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhc-------------
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL--ELD-------------   74 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al--~i~-------------   74 (281)
                      ..-.+..+|-.|.|..|+-++.        .-+.+...+.-+.||.++++|..|+..++.+|  .++             
T Consensus        36 ~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff  107 (242)
T 3kae_A           36 RMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF  107 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred             HhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence            3456788888888888876542        33566777778999999999999999999999  333             


Q ss_pred             --CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           75 --YNHTGALM-LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        75 --p~~~~a~~-~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                        |.+-+.++ .+|.++.+.|..++|+..|.+.....|=...+.++
T Consensus       108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl  153 (242)
T 3kae_A          108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL  153 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence              33445444 45999999999999999999999999877766543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.013  Score=59.37  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      .++...+..++..|+|+-|+....+|+...|....+|+.|+.||..+|+|+.|+-.+.-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            355556777778999999999999999999999999999999999999999999776544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.26  E-value=0.11  Score=49.66  Aligned_cols=113  Identities=11%  Similarity=-0.074  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc-------------------------------------cHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ-------------------------------------KIA   45 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~-------------------------------------~~~   45 (281)
                      .|..+..|+..+..+...|+.+.|...|.+|+.. |....                                     ...
T Consensus       209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  287 (493)
T 2uy1_A          209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL  287 (493)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence            4778889999999999999999999999999987 52211                                     012


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK-EYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g-~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                      +|...+..+.+.+..+.|...|.+| ...+.....|...|.+-+..+ +.+.|...|+.+++..|+.+..+..
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~  359 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE  359 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence            2333344444567788999999999 433345667777777777666 5999999999999999988765433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.00  E-value=0.17  Score=48.62  Aligned_cols=109  Identities=15%  Similarity=0.072  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY-NHTGALMLR   84 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p-~~~~a~~~l   84 (281)
                      +...+...-..+.+.|++++|+.+|.+....  .-..+...|..+-.+|.+.|++++|...|....+..- .+...|-.+
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L  181 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL  181 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            4456666778889999999999999998764  1234677888888999999999999999999877643 477888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIEL--NPSSEVYQN  116 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~l--dP~~~~a~~  116 (281)
                      -.++.+.|++++|...|++..+.  .|+...+..
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~  215 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM  215 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence            99999999999999999988775  455444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.83  E-value=0.13  Score=48.20  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCH----HHH
Q 023491           12 ERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD---YNHT----GAL   81 (281)
Q Consensus        12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~---p~~~----~a~   81 (281)
                      .+|..++..|+|.+|+.++.+.+..+..   ......++.....+|+.++++.++...|.++..+.   +.++    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999999987653   33557778888899999999999999999987654   1333    345


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 023491           82 MLRAQTLV-TLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        82 ~~lg~a~~-~~g~~~eAl~~~ekAL~l  107 (281)
                      ..-|.++. ..++|..|...|-.++.-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            55588888 899999999999988753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.068  Score=50.35  Aligned_cols=102  Identities=14%  Similarity=-0.026  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCH----HHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY--NHT----GALM   82 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p--~~~----~a~~   82 (281)
                      .+..+|..++..|++..|+.+|.++...+........+++....+++..+++..+...+.++-.+-.  .++    ....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4568999999999999999999999988776677788999999999999999999999999865421  222    3445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      ..|.++...++|..|...|..++.....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            5688888899999999999888776443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.55  E-value=0.074  Score=51.39  Aligned_cols=80  Identities=8%  Similarity=-0.102  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++..+|.+......+..|..+|.+|+.+.|.+...|..||.+....|+.-.|+-+|.++|......+.++.++..+-...
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            55677888877888999999999999999999999999999999999999999999999998877888888888877654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.25  E-value=0.27  Score=46.90  Aligned_cols=109  Identities=10%  Similarity=-0.094  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      ..++..+....+.+..+.|...|.+| ..   .+....+|...|...+..+ +++.|...|+.+++..|+.+..+...+.
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN---EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            44566666666788899999999999 43   3345667777777777666 6999999999999999999888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      .....|+...|...|+++    +....++.........
T Consensus       363 ~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~  396 (493)
T 2uy1_A          363 FLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM  396 (493)
T ss_dssp             HHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            889999999999999887    2344444444444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.86  E-value=0.12  Score=45.96  Aligned_cols=63  Identities=13%  Similarity=-0.006  Sum_probs=49.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           53 CYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        53 ~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      .+++.|.++.|+..+...|+.+|.++..-..+.+.|+-.|+|+.|++.++.+.+++|.....-
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            456677888888888888888888888888888888888888888888888888888765443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.058  Score=54.72  Aligned_cols=60  Identities=23%  Similarity=0.263  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      ..+..++..+...|+|+-|+.+-.+|+..   .|..+..|+.|+.||.++|+|+.|+-.+..+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45667788888999999999999999999   9999999999999999999999998665444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.63  E-value=0.42  Score=42.53  Aligned_cols=64  Identities=19%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      ...+++.|.+.+|+......|+.   .|.++.++..+...+.-.|+++.|...+..+.+++|.....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            35678899999999999999998   99999999999999999999999999999999999987654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.39  E-value=0.26  Score=52.00  Aligned_cols=100  Identities=8%  Similarity=-0.035  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------cCcccHHHHHHHHHHHHHcCCHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------IKQQKIALHSNRAACYLKLHDFKKA   63 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------~~p~~~~a~~nra~~~~klg~y~~A   63 (281)
                      |.++...+.+|.+++..|++++|..+|.++.....                    .....+.+|+.....+.+.+.++.+
T Consensus       839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v  918 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA  918 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence            34566678999999999999999999988743210                    1222346677777888899999999


Q ss_pred             HHHHHHHHHhcCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491           64 AEECTSVLELDYN-HT----GALMLRAQTLVTLKEYNSALFDVNR  103 (281)
Q Consensus        64 i~~~~~al~i~p~-~~----~a~~~lg~a~~~~g~~~eAl~~~ek  103 (281)
                      ++....||..... ..    ..|.++-..+..+|+|++|...+..
T Consensus       919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9999999988653 32    2577888899999999999877743

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.88  E-value=0.4  Score=46.26  Aligned_cols=79  Identities=9%  Similarity=-0.022  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL   88 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~   88 (281)
                      .+...|..+.....+..|..+|.+|+.+   .|.....|+.+|.++...|+.-.|+-+|.+++.....++.+.-++...+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            5667898888889999999999999999   9999999999999999999999999999999988877888888887776


Q ss_pred             HH
Q 023491           89 VT   90 (281)
Q Consensus        89 ~~   90 (281)
                      ..
T Consensus       231 ~~  232 (497)
T 1ya0_A          231 SK  232 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.93  Score=42.78  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCH---
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE---LDYNHT---   78 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~---i~p~~~---   78 (281)
                      .....++..++..|+|.+|+..+.....-+-   .......+++.....|+..++|..|...+.++..   -.+.++   
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            3456789999999999999999988764321   1223467788888999999999999999988732   233333   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491           79 -GALMLRAQTLVTLKEYNSALFDVNRLIEL  107 (281)
Q Consensus        79 -~a~~~lg~a~~~~g~~~eAl~~~ekAL~l  107 (281)
                       ..+...|.++...++|.+|..+|..++..
T Consensus       218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             35677799999999999999999998875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.72  E-value=0.88  Score=43.51  Aligned_cols=91  Identities=9%  Similarity=-0.004  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023491           22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQTLVTLKEYNSALFD  100 (281)
Q Consensus        22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a~~~~g~~~eAl~~  100 (281)
                      .+..|..+|.+....  .-..+...|..+-.+|.+.|++++|+..|....... ..+...|-.+-.+|++.|++++|+..
T Consensus        85 ~l~~A~~lf~~M~~~--G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           85 GLSRGFDIFKQMIVD--KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            468888888887664  123467889999999999999999999999987754 34778888888999999999999999


Q ss_pred             HHHHHHh--CCCCHHH
Q 023491          101 VNRLIEL--NPSSEVY  114 (281)
Q Consensus       101 ~ekAL~l--dP~~~~a  114 (281)
                      |...++.  .|+...+
T Consensus       163 ~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          163 DAHMVESEVVPEEPEL  178 (501)
T ss_dssp             HHHHHHTTCCCCHHHH
T ss_pred             HHHHHhcCCCCCHHHH
Confidence            9988874  4554433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.82  E-value=3.2  Score=40.50  Aligned_cols=26  Identities=8%  Similarity=0.009  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTE   32 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~   32 (281)
                      ...|...|..+.+.++++.|..+|.+
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~  706 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTN  706 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555555555555555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.39  E-value=0.59  Score=43.23  Aligned_cols=60  Identities=12%  Similarity=0.026  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491            9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL   71 (281)
Q Consensus         9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al   71 (281)
                      ++...+..++..|++.+|+..+..++..   +|.+-.++..+-.+|++.|+..+|+..|..+-
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456677888999999999999999998   99999999999999999999999999998874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.29  E-value=1.9  Score=35.73  Aligned_cols=50  Identities=12%  Similarity=-0.051  Sum_probs=37.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV   70 (281)
Q Consensus        13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a   70 (281)
                      +-..++..|+++.|.+.-...        .+...|..+|...+..|++.-|..+|.++
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l--------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL--------NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHh--------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            344667788888888764332        34667888888888899999888888776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.66  E-value=1.2  Score=43.51  Aligned_cols=46  Identities=11%  Similarity=-0.001  Sum_probs=34.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      .+.+|+++.|.+.+...     ++...|-.+|..+.+.|+++.|..+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            35577777777766544     67788888888888888888888888765

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.32  E-value=0.38  Score=46.66  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=57.4

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YN---HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~---~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      ..+.+++.+-..|+..+.|+.|.....++.-..  ..   ....+|.+|.++.-.++|.+|..+|..|++..|.+
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            346777888899999999999999999984221  11   14578899999999999999999999999988764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=88.65  E-value=7.2  Score=41.03  Aligned_cols=99  Identities=7%  Similarity=-0.090  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh-hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHH
Q 023491           10 KIERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQT   87 (281)
Q Consensus        10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~-~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a   87 (281)
                      +...-+.+.+.|+.++|..+|....... ..-..+...|+.+-..|.+.|++++|+..|....... ..+...|-.+-.+
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            4455568899999999999997754321 1134577889999999999999999999999987654 3477778888888


Q ss_pred             HHHcCCH-HHHHHHHHHHHHhC
Q 023491           88 LVTLKEY-NSALFDVNRLIELN  108 (281)
Q Consensus        88 ~~~~g~~-~eAl~~~ekAL~ld  108 (281)
                      +++.|+. +.|...|+......
T Consensus       210 lcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          210 MGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcC
Confidence            9999985 78889998888754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.53  E-value=4.5  Score=32.97  Aligned_cols=81  Identities=15%  Similarity=0.055  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..|+..| .+...++.+.|...|..++..   +...+-+|...|..-.+.|++..|...+.++|.+.|..... +..|..
T Consensus        62 ~LWIrYA-~~~ei~D~d~aR~vy~~a~~~---hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~  136 (161)
T 4h7y_A           62 RIQVRFA-ELKAIQEPDDARDYFQMARAN---CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALR  136 (161)
T ss_dssp             HHHHHHH-HHHHHHCGGGCHHHHHHHHHH---CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHH
T ss_pred             HHHHHHH-HHHHhcCHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHH
Confidence            3445545 335568999999999999997   66668889999999999999999999999999999865543 444444


Q ss_pred             HHHcCC
Q 023491           88 LVTLKE   93 (281)
Q Consensus        88 ~~~~g~   93 (281)
                      -.+.|.
T Consensus       137 nl~~~~  142 (161)
T 4h7y_A          137 NLNLQK  142 (161)
T ss_dssp             HHHTTC
T ss_pred             hhhcCC
Confidence            444443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=86.88  E-value=5.2  Score=33.55  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEY   94 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~   94 (281)
                      ...++-.+|+.|+-+-.=.      -+.......-++..++-.|+|..|+-.+...     +...+.|..+.||..+++|
T Consensus        10 ~Ks~kY~dYdt~~fLsa~L------~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdY   78 (242)
T 3kae_A           10 CKSIRYRDYETAIFLAACL------LPCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDY   78 (242)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------C----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhcccccHHHHHHHHH------ccCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHH
Confidence            3457778888877542222      2334456667888899999999998877665     7888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 023491           95 NSALFDVNRLI  105 (281)
Q Consensus        95 ~eAl~~~ekAL  105 (281)
                      ..|+.+++..|
T Consensus        79 kkA~~~le~il   89 (242)
T 3kae_A           79 KKAIKSLESIL   89 (242)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999999

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.65  E-value=3.5  Score=34.13  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL  104 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekA  104 (281)
                      +....|.+|   +.+|+++.|.+.+..+     ++...|-.+|.+....|++.-|..+|+++
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            445556555   5699999999999877     78999999999999999999999999875

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=84.06  E-value=2.6  Score=40.13  Aligned_cols=65  Identities=6%  Similarity=0.030  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 023491           47 HSNRAACYLKLHDFKKAAEECTSVLELDY----------NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL-NPSS  111 (281)
Q Consensus        47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p----------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-dP~~  111 (281)
                      ..++..+|+++++...|...+..+-....          .....+|.+|.+++..++|.+|..++..|++. .|..
T Consensus       179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            35667889999999999888865533221          12357999999999999999999999999998 7654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.16  E-value=11  Score=36.49  Aligned_cols=66  Identities=9%  Similarity=0.001  Sum_probs=45.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN   76 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~   76 (281)
                      ...-..|+..+.|.+|..+..++.--..  .+...+.++|.+|.++.-.++|.+|..++..|++..|.
T Consensus       235 nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          235 NLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             HHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             HHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            3444566777888888888777642100  12234667778888888888888888888888876653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=82.03  E-value=8.5  Score=31.08  Aligned_cols=53  Identities=13%  Similarity=-0.018  Sum_probs=38.6

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           56 KLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        56 klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                      ..|.-++--..+..++.-.+-++..++.+|.+|.+.|+..+|-..+.+|.+-.
T Consensus       103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A          103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            34444444444444444456679999999999999999999999999998763

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.60  E-value=12  Score=34.77  Aligned_cols=99  Identities=10%  Similarity=0.082  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCC----HHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ--QKIALHSNRAACYLK-LHDFKKAAEECTSVLELDYNH----TGA   80 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p--~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p~~----~~a   80 (281)
                      .+.+.+|..+...|++++...++.....+...-+  ..+.+..++-..+.. -+..+.-+..|..+|+.....    .+.
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999998877654432111  111212222222211 234444455555555433222    121


Q ss_pred             HH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           81 LM--LRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        81 ~~--~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      -.  ++|..|+..|+|.+|+..+.++++
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~  127 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLR  127 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            12  566677777777777666666655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=80.21  E-value=5.5  Score=39.28  Aligned_cols=57  Identities=12%  Similarity=-0.041  Sum_probs=46.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491           50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE  106 (281)
Q Consensus        50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~  106 (281)
                      ++...++.|++..|...|..+-.......+..|.+|.++..+|+-.+|...|+++..
T Consensus       291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            333455779999999999776544345688899999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-07
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 1e-09
 Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
          +E AH+ Y+ G +E A     +     + +     +    ++ + +     ++A   T  
Sbjct: 3  MELAHREYQAGDFEAAERHCMQLW---RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

Query: 71 LELDYNHTGALMLRAQTL 88
          ++ +     A        
Sbjct: 60 IKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
            A   Y  G  + A+  Y  A+   +++      + N A    +     +A +   + L 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
           L   H  +L   A           A+    + +E+ P  +  + NL
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 4   PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKA 63
           P  P      A+ L   G   EA   Y  AL +           +N A    +  + ++A
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS---LNNLANIKREQGNIEEA 324

Query: 64  AEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNL 117
                  LE+      A    A  L    +   AL      I ++P+ ++ Y N+
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 1   MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF 60
              P    +    A+     G  EEA+  Y +AL   ++  +  A HSN A+   +    
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKL 355

Query: 61  KKAAEECTSVLELDYNHTGALMLRAQTLVTLK 92
           ++A       + +      A      TL  ++
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 49  NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108
             A    +  DF+ A   C  +   + ++TG L+L +      +  + +       I+ N
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 109 P-SSEVYQNL 117
           P  +E Y NL
Sbjct: 64  PLLAEAYSNL 73

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 8e-08
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 13/179 (7%)

Query: 3   SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
           SP+A   K E+ ++L+   +Y EA   Y  A+            ++NRA CYLK+   ++
Sbjct: 1   SPSAQELK-EQGNRLFVGRKYPEAAACYGRAI---TRNPLVAVYYTNRALCYLKMQQPEQ 56

Query: 63  AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122
           A  +C   LELD     A     Q  + ++ Y+ A+ ++ R   L     +         
Sbjct: 57  ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116

Query: 123 TQLSLAPIPESEAEFEEEEEEEEEEINQAGPYGIEEEEGKSDEKEDAVAPVIKMDNKGE 181
            ++         A+ +     EE  I+Q            + E+E  +    +     E
Sbjct: 117 LRI---------AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 12/126 (9%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNRAACYLKLHD 59
           E+    ++ G+Y +A+  Y + +S                +   +A   N A CYLKL +
Sbjct: 20  EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 79

Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           + KA E C   L LD  +   L  R +  + + E+ SA  D  +++E+NP ++  +    
Sbjct: 80  YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF 139

Query: 120 RLKTQL 125
             + + 
Sbjct: 140 MCQKKA 145

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 4/130 (3%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
           +      +G+ ++AL    EA+   K   +  +L S+         DF++A E+    ++
Sbjct: 2   QWKNALSEGQLQQALELLIEAI---KASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIPE 132
           L   +          +   +              L  + E+           +      +
Sbjct: 59  LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEEL-TKSLVSFNLSMVSQDYEQ 117

Query: 133 SEAEFEEEEE 142
                 + EE
Sbjct: 118 VSELALQIEE 127

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 13/127 (10%)

Query: 12  ERAHQLYRDGRYEEALGFYTE-------------ALSVAKIKQQKIALHSNRAACYLKLH 58
           E  ++ ++     EA+  Y E              + + K K  +I+ + N A CY K  
Sbjct: 22  EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK 81

Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118
           D+ KA +  + VL++D N+  AL       +       A  ++ +   LNP++   +N  
Sbjct: 82  DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 141

Query: 119 ARLKTQL 125
                +L
Sbjct: 142 ELCVNKL 148

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 13/127 (10%)

Query: 12  ERAHQLYRDGRYEEALGFYTEA-------------LSVAKIKQQKIALHSNRAACYLKLH 58
              +  ++   +E A+  YT+                 AK++   ++   N  AC LK+ 
Sbjct: 32  NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS 91

Query: 59  DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118
           D++ A + C   LE+D ++T AL  RAQ    LKEY+ AL D+ +  E+ P  +  Q   
Sbjct: 92  DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 151

Query: 119 ARLKTQL 125
            ++K ++
Sbjct: 152 LKVKQKI 158

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 9/156 (5%)

Query: 13  RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
                     ++ AL  ++       ++     +  N    Y  L +  +A +  T  + 
Sbjct: 11  EGVLAADKKDWKGALDAFS------AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV--YQNLQARLKTQLSLAPI 130
            D +   A   R       ++Y+ A+ D+   +     +++  Y+ L  + K        
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124

Query: 131 PESEAEFEEEEEEE-EEEINQAGPYGIEEEEGKSDE 165
             +    ++EE ++ EE++  A     E    K D+
Sbjct: 125 NIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 7e-06
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 3/137 (2%)

Query: 9   NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECT 68
              E   +  ++G    A+  +  A+   +   + +           +      A     
Sbjct: 21  QPFEEGLRRLQEGDLPNAVLLFEAAV---QQDPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 69  SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128
             LEL  ++  ALM  A +         A   +   +   P+                L 
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137

Query: 129 PIPESEAEFEEEEEEEE 145
           P          +    E
Sbjct: 138 PSKRILGSLLSDSLFLE 154

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSV------------AKIKQQKIALHSNRAACYLKLHD 59
           ER    +++G+Y++AL  Y + +S              K +  ++A H N A C+LKL  
Sbjct: 18  ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 77

Query: 60  FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           F  A E C   LELD N+   L  R +  + + ++  A  D  ++++L P+++  +   A
Sbjct: 78  FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 137

Query: 120 RLKTQL 125
             + ++
Sbjct: 138 VCQQRI 143

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 13/125 (10%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 11  IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
           +E     +     +++  FY         + + +            L    ++ +E   +
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHR---WLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL 268

Query: 71  LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQLSLAP 129
              +      ++L  + L  L      L   + L  ++P  +    +L+++   + S+  
Sbjct: 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 328

Query: 130 IPESE 134
           +  ++
Sbjct: 329 MEYAD 333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E+ ++    G  ++AL  Y+EA+   K+      L+SNR+A Y K  D++KA E+    +
Sbjct: 8   EKGNKALSVGNIDDALQCYSEAI---KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124
           +L  +       +A  L  L  +  A       ++   ++   +     ++ +
Sbjct: 65  DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
           E  +  Y+   ++ AL  Y +A    ++    +   +N+AA Y +  D+ K  E C   +
Sbjct: 9   ELGNDAYKKKDFDTALKHYDKA---KELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 72  ELDYNHTGALML-------RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
           E+   +                +    ++Y  A+   N+ +  + + +V +  Q 
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 20/140 (14%)

Query: 9   NKIERAHQLYRDGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHD 59
             +  A +    G Y+EA      A+ ++                  H+  A     L  
Sbjct: 11  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 70

Query: 60  FKKAAEECTSVLE-----------LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108
           F +A       L                   A+  RA  L  L     A+ +  +++E+ 
Sbjct: 71  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 130

Query: 109 PSSEVYQNLQARLKTQLSLA 128
              +     + R+       
Sbjct: 131 EERKGETPGKERMMEVAIDR 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 12  ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
            +A+  ++   YE A+ FY++     ++       + NR+  YL+   +  A  + T  +
Sbjct: 15  TQANDYFKAKDYENAIKFYSQ---AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71

Query: 72  ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP 131
           ELD  +      RA + + L ++ +AL D   ++++ P  +  +         +      
Sbjct: 72  ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 131

Query: 132 ESEAEFEEEEE 142
            + A  E +  
Sbjct: 132 RAIAGDEHKRS 142

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 2/67 (2%)

Query: 13 RAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70
          RA     DG  +EA      AL          +I   S          +  ++       
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77

Query: 71 LELDYNH 77
           ++   H
Sbjct: 78 EQMARQH 84

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 14  AHQLYRDGRYEEALGFYTEALSVAKIKQQKIA-LHSNRAACYLKLHDFKKAAEECTSVLE 72
           A  L    + E  L    + L+   +   + A L   R   Y  L     A  + +  L 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 73  LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
           +  +           L     +++A    + ++EL+P
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.51
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.32
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.3
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.2
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.16
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.04
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.89
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.86
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.72
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.7
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.31
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.76
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	84.61
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	82.96
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.75
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.31

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-20  Score=142.77  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      .+..++.+|+.++..|+|++|+.+|+++|..   +|.++.+|+++|.||+++|+|.+|+..|.++++++|+++.+|+++|
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g   78 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   78 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHH
Confidence            3567899999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .++..+|++++|+.+|+++++++|+++.+...+++++.
T Consensus        79 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          79 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999988864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.5e-19  Score=144.02  Aligned_cols=117  Identities=20%  Similarity=0.336  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..++.+|+.+|+.|+|.+|+.+|.++|.+   +|.++.+|+++|.||+.+|++.+|+.+|.++|+++|.++.+|+++|.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            567899999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++..+|++.+|+.+|++++.++|++..+...+..+...+.
T Consensus        87 ~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          87 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888876654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.81  E-value=3.3e-19  Score=144.79  Aligned_cols=121  Identities=24%  Similarity=0.277  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKI-------------KQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~-------------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +..++..|+.+|+.|+|.+|+..|+++|.+.+.             .+....+++|+|.||+++|+|.+|+.+|.++|.+
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            556789999999999999999999999987541             1123568899999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.+..+||++|.+|..+|++..|+.+|+++++++|++..+...+..+...++.
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.80  E-value=1.1e-18  Score=143.52  Aligned_cols=122  Identities=25%  Similarity=0.372  Sum_probs=111.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      .+..+.++|+.+|+.|+|.+|+.+|.++|.+.+            ..+....+|.|+|.||+++|+|.+|+.+|..+|.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            357788999999999999999999999998754            22335677899999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.+..+|+++|.+|..+|+|.+|+.+|++++.++|++..+...+..+...+..
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998877653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=143.86  Aligned_cols=122  Identities=26%  Similarity=0.437  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKI------------KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD   74 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~------------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~   74 (281)
                      +..+.+.|+.+|..|+|.+|+.+|+++|.+.+.            ......+|.|+|.||+++|+|++|+.+|+++|.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            567789999999999999999999999998541            12345778999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      |+++.+|+++|.+|+.+|+|..|+.+|+++++++|+++.+...+..+...+...
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998776544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.6e-19  Score=147.24  Aligned_cols=102  Identities=25%  Similarity=0.440  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      +++.+++.|+.+|..|+|++|+.+|+++|.+   +|.++.+|+++|.||+++|+|++|+.+|.++|.++|+++.+|+++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            6788999999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                      .+|..+|+|++|+.+|++|+.++|.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3.7e-18  Score=139.99  Aligned_cols=121  Identities=27%  Similarity=0.438  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL   73 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i   73 (281)
                      +..+...|+.++..|+|..|+..|+++|.+.+             .+|..+.+++|||.||+++|+|++|+.+|.++|++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            44567889999999999999999999997643             35678889999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|.++.+|+++|.+|+.+|++.+|+.+|+++++++|++..+...+..+...+..
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-16  Score=125.52  Aligned_cols=116  Identities=17%  Similarity=0.284  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------H
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-------G   79 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-------~   79 (281)
                      |..+++.|+.+|..|+|.+|+.+|+++|.+   +|.++.+++++|.||+++|+|++|+.+|.++|.++|.+.       .
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~   80 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            567889999999999999999999999999   999999999999999999999999999999999998764       5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|+.+|.++..++++.+|+.+|++++.+++. +.+...+..+.+.++
T Consensus        81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            7888899999999999999999999999875 455566666665553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.2e-16  Score=136.32  Aligned_cols=119  Identities=18%  Similarity=0.076  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      +..+..++.+|.+++..|+|++|+..|.++|.+   +|.++.+|+++|.+|+++|++++|+..|.+++.++|.++.++++
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  110 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  110 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH
Confidence            346789999999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      +|.++..+|++..|+..|+++++++|.+.....++..+...+
T Consensus       111 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988777666554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.5e-16  Score=123.70  Aligned_cols=112  Identities=15%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCC--HHHHHHHHH
Q 023491           12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL---HDFKKAAEECTSVLELDYNH--TGALMLRAQ   86 (281)
Q Consensus        12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl---g~y~~Ai~~~~~al~i~p~~--~~a~~~lg~   86 (281)
                      +.++.++..++|.+|...|.++|.+   +|.++.+++|+|.|+++.   +++.+|+..|++++..+|.+  ..+||++|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            5678899999999999999999999   999999999999999874   45667999999999998755  459999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      +|+.+|+|++|+.+|+++|+++|++..++.++..|...+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999887764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=3.7e-15  Score=114.37  Aligned_cols=95  Identities=12%  Similarity=0.011  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ...+..|..++..|++.+|+..|+++|..   +|.++.+|+++|.+++++|++.+|+.+|.++++++|.+..+|+.+|.+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~   93 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   93 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHH
Confidence            45678999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 023491           88 LVTLKEYNSALFDVNRLI  105 (281)
Q Consensus        88 ~~~~g~~~eAl~~~ekAL  105 (281)
                      |..+|++.+|++.|+++|
T Consensus        94 y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          94 HTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.2e-15  Score=130.53  Aligned_cols=120  Identities=18%  Similarity=0.137  Sum_probs=101.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|.+++..|++.+|+..|..++..   .|....+++.+|.+++++|+|++|+..|.++++++|+++.+++
T Consensus       267 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T d1w3ba_         267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5677778888888888888888888888888877   7788888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL  125 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l  125 (281)
                      ++|.+|..+|++++|+.+|++|++++|++..++.+++.+...+
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            8888888888888898888888888888888888888877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-14  Score=120.84  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +-.+.++|..++..|+|+.|+..|.++      .+.++.+++|+|.||+.+|+|++|+.+|.++|+++|+++.+|+++|.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            345678999999999999999999863      44567899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491           87 TLVTLKEYNSALFDVNRLIELNPSS  111 (281)
Q Consensus        87 a~~~~g~~~eAl~~~ekAL~ldP~~  111 (281)
                      ++..+|+|.+|+.+|++|+...+.+
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHhhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999999987654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2e-14  Score=120.33  Aligned_cols=117  Identities=9%  Similarity=-0.001  Sum_probs=102.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-----   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-----   77 (281)
                      .|.++..++++|.+++..|+|++|+..|.++|.+   +|..+.+|+++|.||+++|+|++|+.+|.+++...+.+     
T Consensus        32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~  108 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY  108 (192)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHH
Confidence            3557889999999999999999999999999999   99999999999999999999999999999999875533     


Q ss_pred             -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 023491           78 -----------TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS--EVYQNLQARLK  122 (281)
Q Consensus        78 -----------~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~--~~a~~~l~~l~  122 (281)
                                 ..+++++|.++..+|++.+|+..|.+++.+.|..  ..+...+..+.
T Consensus       109 ~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~  166 (192)
T d1hh8a_         109 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW  166 (192)
T ss_dssp             GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence                       4789999999999999999999999999998874  33333344333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.8e-15  Score=132.06  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=106.9

Q ss_pred             CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDG-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|.+..++..+|.++...| ++.+|+..|.++|.+   +|....+|++||.++.++|++++|+.+|.++|+++|++..+|
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH
Confidence            6888899999998888876 589999999999998   889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +++|.++..+|++++|+.+|.++|+++|.+..++.+++.+...+..
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999998888888877665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=125.59  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      .++..+...|.+++..|++++|+..|.+++..   .|..+.+++++|.+|+.+|++++|+..|.++++++|+++.+|+++
T Consensus       170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  246 (323)
T d1fcha_         170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  246 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHH
Confidence            35778899999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491           85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQN  116 (281)
Q Consensus        85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~  116 (281)
                      |.+|..+|++++|+..|++||+++|++..+..
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            99999999999999999999999998776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.4e-14  Score=128.41  Aligned_cols=124  Identities=14%  Similarity=0.078  Sum_probs=116.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +|..++++...|.++.+.+.+++|+.+|.++|.+   +|.+..+|++||.++..+| ++++|+.+|.++++++|++..+|
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            4556788888999999999999999999999999   9999999999999999987 59999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491           82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP  129 (281)
Q Consensus        82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~  129 (281)
                      +++|.++..+|++.+|+..|.++++++|.+..++..++.+...++...
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999999999998887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=2.2e-14  Score=115.20  Aligned_cols=109  Identities=10%  Similarity=0.058  Sum_probs=98.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL----------HDFKKAAEECTSVLELDYNHTGALMLR   84 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl----------g~y~~Ai~~~~~al~i~p~~~~a~~~l   84 (281)
                      ..+-+.+.|++|+..|+++|.+   +|.++.+++++|.+++.+          +.+++|+..|+++|+++|+++.+|+++
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            3455677899999999999999   999999999999999864          556899999999999999999999999


Q ss_pred             HHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           85 AQTLVTLKE-----------YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        85 g~a~~~~g~-----------~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      |.+|..+|+           |..|+.+|+++++++|++..++..++.+.+.++
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            999988764           799999999999999999999999988876653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=2.1e-14  Score=115.87  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---------QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-   76 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---------~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-   76 (281)
                      +..++..|..++..|+|++|+..|+++|.+.+..+         ..+.+|.|+|.||+++|+|++|+.+|..+|.+.+. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            34455669999999999999999999999865332         24678999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491           77 ----------HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS  110 (281)
Q Consensus        77 ----------~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~  110 (281)
                                ...+|+++|.+|..+|++++|+.+|++++++.|.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                      2458999999999999999999999999999664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-13  Score=117.47  Aligned_cols=122  Identities=17%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|..+..+...|.+++..|++++|+..|.+++.+   +|....+++++|.++..+|++.+|+..|..++...|.+..+++
T Consensus       233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  309 (388)
T d1w3ba_         233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh
Confidence            4567778888888999999999999999999888   8888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      .+|.++..+|++++|+..|+++++++|++..++..++.+...++.
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  354 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998888888888766543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-13  Score=117.84  Aligned_cols=106  Identities=13%  Similarity=0.098  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      +....+++|..++..|+|.+|+.+|.++|..   +|.++.+|+++|.+++.+|++++|+..|.++++++|.+..+|+.+|
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la   94 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA   94 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccc
Confidence            4455689999999999999999999999999   9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSEVY  114 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a  114 (281)
                      .++..+|++.+|+..|++++.++|.....
T Consensus        95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  123 (323)
T d1fcha_          95 VSFTNESLQRQACEILRDWLRYTPAYAHL  123 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             ccccccccccccccchhhHHHhccchHHH
Confidence            99999999999999999999999986543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7e-13  Score=112.48  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491           21 GRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALF   99 (281)
Q Consensus        21 gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~   99 (281)
                      .+++.|+..+.+++.... .++..+.+++++|.+|+++|+|++|+..|.++|.++|+++.+|+++|.+|..+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            356678888888887533 3456788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491          100 DVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus       100 ~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      +|++++.++|++..++..++.+...++.
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            9999999999999999999988766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.5e-13  Score=97.91  Aligned_cols=85  Identities=18%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI----KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA   80 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a   80 (281)
                      ++++.+++.|..++..|+|.+|+..|++|+.+.+.    .+..+.++.++|.|++++|+|++|+..|+++|+++|++..+
T Consensus         3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            35666667777777777777777777777666431    12235556666666666666666666666666666666666


Q ss_pred             HHHHHHHHH
Q 023491           81 LMLRAQTLV   89 (281)
Q Consensus        81 ~~~lg~a~~   89 (281)
                      +.+++.+..
T Consensus        83 ~~Nl~~~~~   91 (95)
T d1tjca_          83 NGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-12  Score=96.62  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-------TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ  115 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-------~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~  115 (281)
                      ++.-++++|.++++.|+|..|+.+|++|+++.+.+       ..+|+++|.+++++|++++|+..|+++|+++|+++.+.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35567899999999999999999999999986543       67999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 023491          116 NLQARLKTQLS  126 (281)
Q Consensus       116 ~~l~~l~~~l~  126 (281)
                      .+++.+++.+.
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999988774

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=6.8e-12  Score=102.55  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      .+..+...|.+|++.|+|++|+..|.++|.++|.++.+|+++|.||..+|+|+.|+.+|++|++++|++..++..++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34557789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHhhc
Q 023491          123 TQLSL  127 (281)
Q Consensus       123 ~~l~~  127 (281)
                      ..++.
T Consensus        83 ~~l~~   87 (201)
T d2c2la1          83 LEMES   87 (201)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            87764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.7e-12  Score=95.67  Aligned_cols=84  Identities=17%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|.+++..|+|.+|+..|.+++.+   +|.++.+|+++|.++..+|+|++|+.+|.++++++|+++.++.
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHh---ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            6899999999999999999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 023491           83 LRAQTLV   89 (281)
Q Consensus        83 ~lg~a~~   89 (281)
                      .++.+..
T Consensus       110 ~l~~l~~  116 (117)
T d1elwa_         110 GLQNMEA  116 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9998764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-11  Score=97.38  Aligned_cols=95  Identities=22%  Similarity=0.237  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+..+|.+++..|++.+|+..|.++|.+   +|.+..+++++|.|++.+|+|++|+.+|.+++.++|.+..++.
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~  116 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM  116 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            6899999999999999999999999999999999   9999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH--cCCHHHHHHH
Q 023491           83 LRAQTLVT--LKEYNSALFD  100 (281)
Q Consensus        83 ~lg~a~~~--~g~~~eAl~~  100 (281)
                      .++.+...  .+.+..|+..
T Consensus       117 ~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         117 KYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            88777543  3334555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=2.3e-11  Score=92.66  Aligned_cols=83  Identities=17%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      ..++++|.++++.|++.+|+..|++++.++|+++.+|+.+|.++..+|++.+|+.+|+++++++|.+..++..++.+...
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhc
Q 023491          125 LSL  127 (281)
Q Consensus       125 l~~  127 (281)
                      ++.
T Consensus        97 ~g~   99 (112)
T d1hxia_          97 EHN   99 (112)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=1.5e-11  Score=99.85  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491            4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML   83 (281)
Q Consensus         4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~   83 (281)
                      |..+..+.++|.++++.|+|.+|+..|+++|.+   +|.++.+|+++|.+|+.+|+|++|+.+|.++++++|++..++..
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            456778889999999999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHH
Q 023491           84 RAQTLVTLKEYNSAL   98 (281)
Q Consensus        84 lg~a~~~~g~~~eAl   98 (281)
                      ++.+...+..+.++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988777666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.5e-11  Score=95.83  Aligned_cols=80  Identities=16%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      +..+.++|.++++.|+|++|+.+|+++|.++|.++.+++++|.+|.++|+|..|+.+|+++|+++|.+...+..++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999988765555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=1.3e-10  Score=96.15  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-------------------IKQQKIALHSNRAACYLKLHDFKKAAEEC   67 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~   67 (281)
                      .+.++..|..++..|++.+|+.+|.+||.+.+                   ..+....++.++|.+++.+|++.+|+.+|
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46788999999999999999999999999843                   12234578899999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHH
Q 023491           68 TSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE-------LNPSSEVYQNLQARL  121 (281)
Q Consensus        68 ~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~-------ldP~~~~a~~~l~~l  121 (281)
                      ++++.++|.+..+|..++.+|..+|++.+|+..|+++..       +.|. +....+...|
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~i  150 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI  150 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHH
Confidence            999999999999999999999999999999999999844       5664 4444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.18  E-value=1.3e-10  Score=94.29  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+.++|.|+++.|+|.+|+..|+++|.+   +|.+..+++++|.||+.+|+|++|+.+|.+++.++|++..++..++.
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            345678999999999999999999999999   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHH
Q 023491           87 TLVTLKEYNS   96 (281)
Q Consensus        87 a~~~~g~~~e   96 (281)
                      +...++.+.+
T Consensus       141 ~~~~~~~~~e  150 (168)
T d1kt1a1         141 CQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhHHH
Confidence            9877776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.3e-10  Score=93.10  Aligned_cols=88  Identities=19%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491            8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT   87 (281)
Q Consensus         8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a   87 (281)
                      ..+.++|.++++.|+|.+|+..|..+|.+   +|.++.+++++|.||+.+|+|++|+.+|.+++.++|++..+...++.+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhc---cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45668999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHH
Q 023491           88 LVTLKEYNSAL   98 (281)
Q Consensus        88 ~~~~g~~~eAl   98 (281)
                      +..++......
T Consensus       140 ~~~~~~~~~~e  150 (170)
T d1p5qa1         140 QQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877766553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.15  E-value=1.4e-10  Score=92.83  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ   86 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~   86 (281)
                      +..+.++|.++++.|+|.+|+..|.++|.+   +|.+..+|+++|.||+.+|+|++|+.+|.+++.++|++..+...++.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            345678999999999999999999999999   99999999999999999999999999999999999999999999988


Q ss_pred             HHHHcCC
Q 023491           87 TLVTLKE   93 (281)
Q Consensus        87 a~~~~g~   93 (281)
                      +..++++
T Consensus       144 ~~~kl~~  150 (153)
T d2fbna1         144 CVNKLKE  150 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.6e-11  Score=112.01  Aligned_cols=121  Identities=6%  Similarity=-0.130  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM   82 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~   82 (281)
                      +|.++..+...|..+...|++..|+..|..++..   ++  ..++.++|.++..+|+|++|+.+|.+|+.++|+++.+|+
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~  190 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN  190 (497)
T ss_dssp             ---------------------------CCHHHHH---HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHH
Confidence            3566778888999999999999999999999887   43  467889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491           83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA  128 (281)
Q Consensus        83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~  128 (281)
                      +||.++...|++.+|+.+|.+||.++|..+.++.++..+.......
T Consensus       191 ~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         191 QLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999998887665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.8e-11  Score=91.95  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491            3 SPAAPANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQK--IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH   77 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~--~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~   77 (281)
                      +|.++..+++.|.++++.+   ++.+|+.+|++++..   ++..  ..+++++|.||+++|+|++|+.+|.++|+++|++
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            6899999999999998754   566799999999987   6543  5689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 023491           78 TGALMLRAQTLVTL   91 (281)
Q Consensus        78 ~~a~~~lg~a~~~~   91 (281)
                      ..+...++.+..++
T Consensus       106 ~~A~~l~~~I~~~~  119 (122)
T d1nzna_         106 NQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1e-09  Score=96.98  Aligned_cols=126  Identities=20%  Similarity=0.143  Sum_probs=111.6

Q ss_pred             CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 023491            3 SPAAPANKIERAHQLYRD----------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--FKKAAEECTSV   70 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~----------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--y~~Ai~~~~~a   70 (281)
                      +|.+..+|..++..+...          |.+.+|+.+|+.++..   +|.+..+++++|.++..++.  +.+|+..|.++
T Consensus        59 ~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~---~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  135 (334)
T d1dcea1          59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh---CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHH
Confidence            788888887777665543          4589999999999999   99999999999999988775  89999999999


Q ss_pred             HHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCCC
Q 023491           71 LELDYNHTGAL-MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPIP  131 (281)
Q Consensus        71 l~i~p~~~~a~-~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~~  131 (281)
                      +.++|.+..++ +.+|.++...+.+..|+..+++++.++|.+..++.+++.+...++....+
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            99999999886 57789999999999999999999999999999999999999998766544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=3.2e-10  Score=90.26  Aligned_cols=92  Identities=17%  Similarity=0.073  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-----------HH
Q 023491            3 SPAAPANKIERAHQLYRD----------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-----------FK   61 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~----------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-----------y~   61 (281)
                      +|.++.+++..|.+++..          +.+++|+..|.++|.+   +|.+..+|+++|.+|+.+|+           |.
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  103 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhHHHHHHHcccchhhHHHHHHhHH
Confidence            699999999999999854          4568999999999999   99999999999999988764           79


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491           62 KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA   97 (281)
Q Consensus        62 ~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA   97 (281)
                      +|+.+|.+++.++|++..++..++.+....+.+.++
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887554444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=3.6e-09  Score=92.24  Aligned_cols=103  Identities=11%  Similarity=0.012  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------   77 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------   77 (281)
                      +..+...|+.+...|+|++|+..|.+++.+..   ..+..+.+|.++|.||.++|++++|+..|.+++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            45667777888888888888888888887643   123346678888888888888888888888887775543      


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Q 023491           78 TGALMLRAQTLVT-LKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        78 ~~a~~~lg~a~~~-~g~~~eAl~~~ekAL~ldP  109 (281)
                      ..++..+|.++.. .|++++|+..|++++.+.+
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4577777777755 5888888888888877643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=2.5e-09  Score=94.39  Aligned_cols=116  Identities=13%  Similarity=0.012  Sum_probs=87.9

Q ss_pred             CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC----------------------
Q 023491            3 SPAAPANKI-ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD----------------------   59 (281)
Q Consensus         3 ~P~~a~~l~-~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~----------------------   59 (281)
                      +|.+...+. ..|..+...+.+..|+..|.+++..   +|.+..+|+++|.++.++|+                      
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~---~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  215 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV  215 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH
Confidence            355555543 4556666677777777777777777   77777777777777776654                      


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491           60 ------------------------------------------FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA   97 (281)
Q Consensus        60 ------------------------------------------y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA   97 (281)
                                                                +.+|+..|.+++..+|.+..+|+.+|.++..+|++++|
T Consensus       216 ~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         216 QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHH
Confidence                                                      44555666666666677778999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           98 LFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        98 l~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      +.+|+++++++|....++..++..
T Consensus       296 ~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         296 LQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcccHHHHHHHHHH
Confidence            999999999999988887766443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=1.2e-08  Score=88.94  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC---cccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCC-----
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIK---QQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDYN-----   76 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~---p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p~-----   76 (281)
                      .+..+.+.|.++...|++.+|+.+|.+++.+....   .....++.++|.+|.. +|+|++|+..|.+++.+.+.     
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~  155 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA  155 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            35678899999999999999999999999986522   2336778899988865 69999999999999887532     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491           77 -HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE  112 (281)
Q Consensus        77 -~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~  112 (281)
                       ...++.++|.++..+|+|.+|+..|++++.+.+.+.
T Consensus       156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence             245799999999999999999999999999988764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.8e-08  Score=78.34  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             ccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491           42 QKIALHSNRAACYLKLH---DFKKAAEECTSVLELDYNHT-GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL  117 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~p~~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~  117 (281)
                      ......|+.|.|+.+..   +..+||..++.+++.+|.+. .++|+||.+|+++|+|..|+.+++++|+++|+|..+..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            45778899999998765   46789999999999998765 799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 023491          118 QARLKTQLS  126 (281)
Q Consensus       118 l~~l~~~l~  126 (281)
                      +..|...+.
T Consensus       113 ~~~Ie~~~~  121 (124)
T d2pqrb1         113 KSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=7.7e-08  Score=81.81  Aligned_cols=104  Identities=14%  Similarity=0.061  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 023491            5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ--QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-----   77 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p--~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-----   77 (281)
                      ..++....+|.+++..|++++|+.+|+++|...+..+  ....+++++|.+|+.+|+|++|+..|..++.+.+..     
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3466777889999999999999999999999844221  235688999999999999999999999999876432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491           78 -TGALMLRAQTLVTLKEYNSALFDVNRLIELN  108 (281)
Q Consensus        78 -~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld  108 (281)
                       ..+++.+|.++...|++..|+..+.+++.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3578999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.70  E-value=4.7e-08  Score=85.26  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=80.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 023491           14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE   93 (281)
Q Consensus        14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~   93 (281)
                      +..++..|++++|+..|.++|+.   +|.+..++.++|.+|+..|++++|+..|+.+++++|++..++..++.++...+.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            56788999999999999999999   999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHHHHH
Q 023491           94 YNSALFDVNRLIE  106 (281)
Q Consensus        94 ~~eAl~~~ekAL~  106 (281)
                      ..++...+.+...
T Consensus        80 ~~~a~~~~~~~~~   92 (264)
T d1zbpa1          80 RKDFAQGAATAKV   92 (264)
T ss_dssp             HHHHTTSCCCEEC
T ss_pred             cHHHHHHhhhhhc
Confidence            7777665544333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=8e-08  Score=81.71  Aligned_cols=103  Identities=14%  Similarity=-0.006  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL------DYNHTG   79 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i------~p~~~~   79 (281)
                      +..+...|..+...|++..|...|.+++...+ ..+.....+.++|.+++.+|++++|+..+.+++.+      .+....
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  292 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR  292 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence            44567788999999999999999999988744 23445777889999999999999999999999855      345567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491           80 ALMLRAQTLVTLKEYNSALFDVNRLIELNP  109 (281)
Q Consensus        80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP  109 (281)
                      +++.+|.+|..+|++++|+..|++|+.+.+
T Consensus       293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         293 NLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.2e-08  Score=92.32  Aligned_cols=107  Identities=14%  Similarity=-0.034  Sum_probs=64.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 023491           15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEY   94 (281)
Q Consensus        15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~   94 (281)
                      ......+.|..|+..|..++.+   ++....++.++|.++.+.|++..|+..+.+++.+++  ..+++++|.++..+|+|
T Consensus        94 ~l~~a~~~Y~~ai~~l~~~~~l---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~  168 (497)
T d1ya0a1          94 FLEAASGFYTQLLQELCTVFNV---DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQT  168 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC---ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccH
Confidence            3334456677777777777776   888899999999999999999999999999998876  47899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491           95 NSALFDVNRLIELNPSSEVYQNLQARLKTQLS  126 (281)
Q Consensus        95 ~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~  126 (281)
                      ++|+.+|++|+.++|++..++..++.+....+
T Consensus       169 ~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            99999999999999999999999998876543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=1.7e-06  Score=75.25  Aligned_cols=118  Identities=9%  Similarity=-0.066  Sum_probs=90.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK-IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~-~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      .|.+...+...+......|+++.|...|.++|..   .|.+ ..+|..++.+..+.|+++.|...|.+++...|.+...|
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~---~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~  171 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Confidence            4667777778888888888888888888888887   5544 34677778888888888888888888888888888888


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           82 MLRAQTLVT-LKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        82 ~~lg~a~~~-~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      ...|..... .|+.+.|...|++++...|.+..++.....+..
T Consensus       172 ~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         172 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            887776544 577888888888888888888777666655543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.44  E-value=4.7e-07  Score=71.64  Aligned_cols=80  Identities=16%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 023491           48 SNRAACYLKLHDFKKAAEECTSVLELDYNH------------TGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-----  110 (281)
Q Consensus        48 ~nra~~~~klg~y~~Ai~~~~~al~i~p~~------------~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~-----  110 (281)
                      +..|..++..|+|++|+..|+++|.+.+..            +.+|.++|.+|..+|+|.+|+.+|+++|.+.|.     
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            345888999999999999999999998764            368999999999999999999999999997542     


Q ss_pred             ------CHHHHHHHHHHHHHhhc
Q 023491          111 ------SEVYQNLQARLKTQLSL  127 (281)
Q Consensus       111 ------~~~a~~~l~~l~~~l~~  127 (281)
                            ...+..+++.+...++.
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~  115 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGR  115 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhHHHHhhhHHHHHHHHH
Confidence                  12245556666655543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=3.4e-06  Score=65.18  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            6 APANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQK-IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~-~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      +++..|+.|-++.+..   +...|+.+|+.+++.   +|.+ -.++|++|.+|+++|+|++|+.+|.++|+++|++..+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            4678889999998775   557899999999987   7765 47999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 023491           82 MLRAQTLVT   90 (281)
Q Consensus        82 ~~lg~a~~~   90 (281)
                      ..+-.+.-+
T Consensus       111 ~L~~~Ie~~  119 (124)
T d2pqrb1         111 ALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.33  E-value=9.1e-06  Score=68.30  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491            6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHTGAL   81 (281)
Q Consensus         6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~~a~   81 (281)
                      ||.+++.+|..++..++|.+|+.+|+++...     .+..+++++|.+|+.    ..++..|+.++..+...  .++.+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchh
Confidence            6889999999999999999999999999875     367889999999998    77999999999998654  488889


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491           82 MLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLK  122 (281)
Q Consensus        82 ~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~  122 (281)
                      +.+|.++..    ......|+..|+++....+  ..+...++...
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~  116 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIY  116 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccc
Confidence            999998876    4688999999999998754  44444444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.31  E-value=1.1e-06  Score=76.45  Aligned_cols=72  Identities=13%  Similarity=-0.007  Sum_probs=66.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491           52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT  123 (281)
Q Consensus        52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~  123 (281)
                      .-.++.|++++|+..|.++++.+|.+..++..+|.+|+..|++++|+..|+++++++|++..+...+..+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999988887776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=9.1e-06  Score=70.47  Aligned_cols=114  Identities=11%  Similarity=-0.053  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDYNHTGALMLRA   85 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p~~~~a~~~lg   85 (281)
                      ...+...+....+.|.+..|...|.+++..   .|.....+...|...++ .|+++.|...|++++...|.++..|...+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            446788899999999999999999999998   88888888888877654 68999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 023491           86 QTLVTLKEYNSALFDVNRLIELNPSSE----VYQNLQARLKT  123 (281)
Q Consensus        86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~----~a~~~l~~l~~  123 (281)
                      ..+...|++..|...|++|+...|.++    .++........
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999877543    34444444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=4.3e-06  Score=68.16  Aligned_cols=86  Identities=9%  Similarity=-0.007  Sum_probs=75.6

Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------------HHHHHHHHHHHHcCCHHHHHH
Q 023491           42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----------------------GALMLRAQTLVTLKEYNSALF   99 (281)
Q Consensus        42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----------------------~a~~~lg~a~~~~g~~~eAl~   99 (281)
                      ..+..++++|..+...|++++|+..|.+++.+.+...                      .++.++|.++..+|++.+|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            4567788899999999999999999999999976432                      578999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491          100 DVNRLIELNPSSEVYQNLQARLKTQLSL  127 (281)
Q Consensus       100 ~~ekAL~ldP~~~~a~~~l~~l~~~l~~  127 (281)
                      ++++++.++|.+..++..+..+...++.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr  116 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDR  116 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence            9999999999999999888777665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.04  E-value=2.2e-05  Score=65.87  Aligned_cols=108  Identities=14%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCC
Q 023491            5 AAPANKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYN   76 (281)
Q Consensus         5 ~~a~~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~   76 (281)
                      .+...+..+|..++.    ..+...+...+..+...     .+..+.+++|.+|+.    .+++.+|+.+|.++.+.  .
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g  212 (265)
T d1ouva_         140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--E  212 (265)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--T
T ss_pred             cccchhhhhhhhhccCCCcccccccchhhhhccccc-----cccccccchhhhcccCcccccchhhhhhhHhhhhcc--c
Confidence            456677788888876    45777788888877664     467889999999987    67999999999999876  4


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           77 HTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        77 ~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                      ++.++++||.+|..    .+++..|+.+|++|..+.  +..+...+..|
T Consensus       213 ~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l  259 (265)
T d1ouva_         213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQL  259 (265)
T ss_dssp             CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence            78999999999986    448999999999999885  45555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.76  E-value=0.00022  Score=54.24  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT----L   91 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~----~   91 (281)
                      ..++.+|+.+|.++...     .++.+.+++|.+|+.    ..++.+|+.+|.++...  .++.+.++||.+|..    .
T Consensus        36 ~~~~~~a~~~~~~aa~~-----g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~  108 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV  108 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             ccCHHHHHHHHhhhhcc-----cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccC
Confidence            35677788888777664     356677778877776    45678888888887654  467778888888776    4


Q ss_pred             CCHHHHHHHHHHHHHhC
Q 023491           92 KEYNSALFDVNRLIELN  108 (281)
Q Consensus        92 g~~~eAl~~~ekAL~ld  108 (281)
                      .++..|+.+|++|.++.
T Consensus       109 ~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         109 KNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            57888888888887764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00094  Score=50.49  Aligned_cols=93  Identities=11%  Similarity=0.018  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHH
Q 023491           21 GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT----LKEYNS   96 (281)
Q Consensus        21 gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~----~g~~~e   96 (281)
                      .++.+|+.+|.++...   .  +..+.++++.  ....++++|+..|.++.+.  .++.+.+.||.+|..    ..++..
T Consensus         7 kd~~~A~~~~~kaa~~---g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL---N--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHT---T--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHC---C--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHH
Confidence            4889999999999986   4  3445566664  3467899999999998764  689999999999987    567999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491           97 ALFDVNRLIELNPSSEVYQNLQARLKTQ  124 (281)
Q Consensus        97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~  124 (281)
                      |+.+|+++.+.  +++.+...++.+...
T Consensus        78 A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          78 AAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999999887  567788888877654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.61  E-value=1.8  Score=37.14  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH-----
Q 023491           11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA-----   85 (281)
Q Consensus        11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg-----   85 (281)
                      -.-|..+++.|.|+.|+.+|+..-.           +-.+..||.++++|..|...+.++     +....|....     
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d-----------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD   81 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC-----------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-----------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence            4568888888999888888875322           233556667777777777766665     3444444444     


Q ss_pred             -------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491           86 -------------------------QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL  121 (281)
Q Consensus        86 -------------------------~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l  121 (281)
                                               ..+...|.+.+.+..|+.++.+.+.+..+...+..+
T Consensus        82 ~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_          82 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  142 (336)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence                                     444445556666666666665555555554444333

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=82.96  E-value=2  Score=37.68  Aligned_cols=83  Identities=13%  Similarity=0.030  Sum_probs=57.4

Q ss_pred             cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491           20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALF   99 (281)
Q Consensus        20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~   99 (281)
                      .+....|...+......    ..+....-.++...+..+++..++..+..+-.......+..|.+|.++..+|+...|..
T Consensus       265 ~~~~~~a~~~~~~~~~~----~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~  340 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMR----SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE  340 (450)
T ss_dssp             TTCCHHHHHHHHHHHHT----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCchHHHHHHHHhhccc----ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHH
Confidence            45556666666555543    33333333344445667899988888876533333457889999999999999999999


Q ss_pred             HHHHHHH
Q 023491          100 DVNRLIE  106 (281)
Q Consensus       100 ~~ekAL~  106 (281)
                      .|..+..
T Consensus       341 ~~~~~a~  347 (450)
T d1qsaa1         341 ILHQLMQ  347 (450)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998864

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.75  E-value=0.6  Score=32.11  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            2 ASPAAPANKI-ERAHQLYRDGRYEEALGFYTEALSV   36 (281)
Q Consensus         2 a~P~~a~~l~-~~G~~~~~~gdy~eAl~~y~~aL~~   36 (281)
                      .+|.|..-.. -+|..+.+.|.|++||+++..|+.+
T Consensus         2 ~sPLN~AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           2 EGPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444443333 4566667777777777777776664

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.31  E-value=2.1  Score=29.71  Aligned_cols=30  Identities=30%  Similarity=0.533  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491            7 PANKIERAHQLYRDGRYEEALGFYTEALSV   36 (281)
Q Consensus         7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~   36 (281)
                      |-.++.+|..+-..|+|.+|+.+|..+|.+
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445677888888889999999998888886