Citrus Sinensis ID: 023500
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| A7RWD2 | 327 | Probable cytosolic iron-s | N/A | no | 0.957 | 0.822 | 0.519 | 1e-82 | |
| B4GDM7 | 335 | Probable cytosolic iron-s | N/A | no | 0.971 | 0.814 | 0.530 | 4e-79 | |
| Q292E8 | 335 | Probable cytosolic iron-s | yes | no | 0.964 | 0.808 | 0.530 | 1e-78 | |
| B3NQR5 | 335 | Probable cytosolic iron-s | N/A | no | 0.964 | 0.808 | 0.537 | 2e-78 | |
| Q7K1Y4 | 335 | Probable cytosolic iron-s | yes | no | 0.964 | 0.808 | 0.533 | 2e-78 | |
| B4P7Q3 | 335 | Probable cytosolic iron-s | N/A | no | 0.964 | 0.808 | 0.530 | 4e-78 | |
| B4QFZ8 | 335 | Probable cytosolic iron-s | N/A | no | 0.967 | 0.811 | 0.528 | 6e-78 | |
| B4HRQ6 | 335 | Probable cytosolic iron-s | N/A | no | 0.967 | 0.811 | 0.528 | 8e-78 | |
| B4KTK4 | 331 | Probable cytosolic iron-s | N/A | no | 0.950 | 0.806 | 0.533 | 1e-76 | |
| B4MY77 | 335 | Probable cytosolic iron-s | N/A | no | 0.964 | 0.808 | 0.523 | 2e-76 |
| >sp|A7RWD2|CIAO1_NEMVE Probable cytosolic iron-sulfur protein assembly protein OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 306 bits (783), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/281 (51%), Positives = 196/281 (69%), Gaps = 12/281 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+RS WSP G LA+ASFDATTCIW+ G++EC ATLEGHENEVKSV W+ SG+L
Sbjct: 49 HQRTIRSLGWSPCGTFLASASFDATTCIWDQKSGEFECNATLEGHENEVKSVDWSVSGSL 108
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATCGRDKSVWIWEV +E+EC SV+ H QDVK V WHPT ++L SCSYD+TIK++
Sbjct: 109 LATCGRDKSVWIWEVQEDDEYECASVIHSHTQDVKKVVWHPTKEILASCSYDDTIKLY-- 166
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
D D+W C T+ GH ST+W++SF+ GD++VSCSDD T++IW + Q G
Sbjct: 167 -KEDEDDWSCCDTL----EGHESTVWSISFDGSGDRIVSCSDDKTVRIWKSYPPGNQEGV 221
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ W+ +C +SGYHDRTI+ VHWS+ G+IA+ + DD ++ F E + + PS+
Sbjct: 222 VVSGKHTKWKCVCVLSGYHDRTIYDVHWSKVSGLIATASGDDCIRIFKEDTNSDRNQPSF 281
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+++ + KAH MDVNS+ W P + +LA+ SDDG +K+W
Sbjct: 282 QLVATQRKAHSMDVNSICWHPKDENILATCSDDGTVKLWRF 322
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Nematostella vectensis (taxid: 45351) |
| >sp|B4GDM7|CIAO1_DROPE Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/283 (53%), Positives = 195/283 (68%), Gaps = 10/283 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
DSD W C T+S H+ST+W++ F+A+GD+LVSCSDD T+KIW A + +
Sbjct: 178 SQLDSD-WDCTATLS----SHTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGI 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D + W+ +CT+SG H R I+ V W + G+IA+G DD ++ F E+ D D P++
Sbjct: 233 ATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ L +E AH+ DVN+V+W+P L S SDDG IKIW++A+
Sbjct: 293 EQLTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKVAD 335
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila persimilis (taxid: 7234) |
| >sp|Q292E8|CIAO1_DROPS Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 193/281 (68%), Gaps = 10/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
DSD W C T+S H+ST+W++ F+A+GD+LVSCSDD T+KIW A + +
Sbjct: 178 SQLDSD-WDCTATLS----SHTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGI 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D + W+ +CT+SG H R I+ V W + G+IA+G DD ++ F E+ D D P++
Sbjct: 233 ATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AH+ DVN+V+W+P L S SDDG IKIW++
Sbjct: 293 EQLTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKV 333
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B3NQR5|CIAO1_DROER Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/281 (53%), Positives = 191/281 (67%), Gaps = 10/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT +VL S SYDNTIK+ +A
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEVLASASYDNTIKM-YA 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
ED ++W C T++ H+STIW + F+A G++LVSCSDD TIKIW A + +
Sbjct: 177 EDPVDNDWDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTIKIWKAYHPGNSAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQLTAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila erecta (taxid: 7220) |
| >sp|Q7K1Y4|CIAO1_DROME Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila melanogaster GN=Ciao1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/281 (53%), Positives = 190/281 (67%), Gaps = 10/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F ES D D P++
Sbjct: 233 ATPDQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila melanogaster (taxid: 7227) |
| >sp|B4P7Q3|CIAO1_DROYA Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 10/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIQWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT ++L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEILASASYDNTIKMYAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+STIW + F+A G++LVSCSDD T+KIW A + +
Sbjct: 178 EPIDND-WDCTATLT----SHTSTIWGIDFDADGERLVSCSDDTTVKIWRAYHPGNSAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQLTAEESAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila yakuba (taxid: 7245) |
| >sp|B4QFZ8|CIAO1_DROSI Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT DVL S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWKAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ + W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + +E AHD DVNSVQW+P L S SDDG IKIW+++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila simulans (taxid: 7240) |
| >sp|B4HRQ6|CIAO1_DROSE Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila sechellia GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT DVL S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ + W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + +E AHD DVNSVQW+P L S SDDG IKIW+++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila sechellia (taxid: 7238) |
| >sp|B4KTK4|CIAO1_DROMO Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila mojavensis GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/281 (53%), Positives = 191/281 (67%), Gaps = 14/281 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW +EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREVRWSPCGEYLASASFDATTAIW----SKHECTATLEGHENEVKSVSWSRSGGL 113
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H+QDVK V WHPT ++L S SYDNTIK++
Sbjct: 114 LATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVWHPTKEILASASYDNTIKMYAE 173
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
DSD W C T+S H+ST+W++ F+A G++LVSCSDD T+KIW A ++G
Sbjct: 174 SALDSD-WDCTATLS----SHTSTVWSIDFDADGERLVSCSDDATLKIWRAYHPGNEAGI 228
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
D W+ +CT+SG H R I+ V W + G+IAS DD+++ F ES D D PS+
Sbjct: 229 ATPDKTTVWKCVCTLSGLHTRAIYDVSWCKLTGLIASACGDDAIRIFKESSDSKRDAPSF 288
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
++L +E AH+ DVN+V+W+P L S SDDG IKIW+L
Sbjct: 289 ELLTSEESAHEQDVNAVEWNPVNVGQLISCSDDGTIKIWKL 329
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila mojavensis (taxid: 7230) |
| >sp|B4MY77|CIAO1_DROWI Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/281 (52%), Positives = 190/281 (67%), Gaps = 10/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSKSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT ++L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
DSD W C T+S H+ST+W++ F+A G++LVSCSDD T+KIW A + +
Sbjct: 178 SALDSD-WDCTATLS----SHTSTVWSIDFDADGERLVSCSDDTTLKIWRAYHPGNDAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F ES D D P++
Sbjct: 233 ATPDKQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKRDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + +E AH+ DVNSV+W+P L S SDDG IKIW++
Sbjct: 293 EQVTAEESAHEQDVNSVEWNPVMAGQLISCSDDGTIKIWKM 333
|
Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Drosophila willistoni (taxid: 7260) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 255575687 | 349 | WD-repeat protein, putative [Ricinus com | 0.978 | 0.787 | 0.833 | 1e-135 | |
| 225440894 | 344 | PREDICTED: probable cytosolic iron-sulfu | 0.985 | 0.805 | 0.816 | 1e-135 | |
| 224059248 | 323 | predicted protein [Populus trichocarpa] | 0.971 | 0.845 | 0.8 | 1e-129 | |
| 449462972 | 350 | PREDICTED: probable cytosolic iron-sulfu | 0.978 | 0.785 | 0.782 | 1e-128 | |
| 297822069 | 352 | EMB1345 [Arabidopsis lyrata subsp. lyrat | 0.982 | 0.784 | 0.755 | 1e-124 | |
| 224064776 | 332 | predicted protein [Populus trichocarpa] | 0.964 | 0.816 | 0.782 | 1e-124 | |
| 18401018 | 352 | transducin/WD-40 repeat-containing prote | 0.982 | 0.784 | 0.751 | 1e-123 | |
| 357511053 | 344 | hypothetical protein MTR_7g104550 [Medic | 0.985 | 0.805 | 0.769 | 1e-121 | |
| 116789145 | 368 | unknown [Picea sitchensis] | 0.978 | 0.747 | 0.736 | 1e-119 | |
| 297802694 | 346 | predicted protein [Arabidopsis lyrata su | 0.985 | 0.800 | 0.713 | 1e-118 |
| >gi|255575687|ref|XP_002528743.1| WD-repeat protein, putative [Ricinus communis] gi|223531837|gb|EEF33655.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/277 (83%), Positives = 257/277 (92%), Gaps = 2/277 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSGKLLATASFDATT IWE++GGD+ECV+TLEGHENEVKSVSWNASG+L
Sbjct: 72 HTRTVRSCAWSPSGKLLATASFDATTAIWENIGGDFECVSTLEGHENEVKSVSWNASGSL 131
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDK+VWIWEVMPGNEFEC SVLQGH QDVKMV+WHP +DVLFSCSYDNTIKVW A
Sbjct: 132 LATCSRDKTVWIWEVMPGNEFECASVLQGHTQDVKMVKWHPNIDVLFSCSYDNTIKVW-A 190
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D D WHCVQT+ ESNNGH+ST+WALSFNA+GDK+V+CSDDLT+KIW DI RM SGD
Sbjct: 191 EDGDGD-WHCVQTLGESNNGHTSTVWALSFNAEGDKMVTCSDDLTLKIWETDIGRMVSGD 249
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
+ASW H+CT+SGYHDRTIFS HWSREGIIASGAADD ++FFVESKDDL++GPSY++LLK
Sbjct: 250 DHASWNHVCTLSGYHDRTIFSAHWSREGIIASGAADDGIRFFVESKDDLVNGPSYRLLLK 309
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
KEKAHDMD+NSVQW+PGE RLLASASDDG IKIWELA
Sbjct: 310 KEKAHDMDINSVQWAPGENRLLASASDDGTIKIWELA 346
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440894|ref|XP_002282694.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein [Vitis vinifera] gi|297740110|emb|CBI30292.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 227/278 (81%), Positives = 255/278 (91%), Gaps = 1/278 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSGKLLATASFDATT IWE +G D+ECV+TLEGHENEVKSVSWNASG+L
Sbjct: 66 HTRTVRSCAWSPSGKLLATASFDATTAIWELIGDDFECVSTLEGHENEVKSVSWNASGSL 125
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV PGNEFECVSVLQGH QDVKMVQWHP MDVLFSCSYDNT+K+W A
Sbjct: 126 LATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPIMDVLFSCSYDNTVKIW-A 184
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED DSD+WHCVQT+ ESNNGH+ST+WALSFN +GDK+V+CSDDLT+KIW D MQ+G+
Sbjct: 185 EDGDSDDWHCVQTLGESNNGHTSTVWALSFNPEGDKMVTCSDDLTVKIWDTDSITMQAGE 244
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
GYA W+HLCT+SGYHDRTIFS HWSREGIIA+GAADD+++FFVESKD L+DGP YK++LK
Sbjct: 245 GYAPWKHLCTLSGYHDRTIFSAHWSREGIIATGAADDAIRFFVESKDGLVDGPLYKLMLK 304
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
KE+AHDMD+NSVQWS GE RLLASASDDG IKIWELA+
Sbjct: 305 KEQAHDMDINSVQWSSGENRLLASASDDGTIKIWELAS 342
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059248|ref|XP_002299788.1| predicted protein [Populus trichocarpa] gi|222847046|gb|EEE84593.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/275 (80%), Positives = 249/275 (90%), Gaps = 2/275 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSP GK LATASFDATT IWE++GGD+ECV+TLEGHENEVK VSWNASG+L
Sbjct: 51 HTRTVRSCAWSPCGKFLATASFDATTAIWENIGGDFECVSTLEGHENEVKCVSWNASGSL 110
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDK+VWIWEVMPGNEFECVSVLQGH QDVKMV+WHPTMDVLFSCSYDNT+KVW A
Sbjct: 111 LATCSRDKTVWIWEVMPGNEFECVSVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKVW-A 169
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D WHCVQ++ ESNNGHSST+WAL+FNA+G+++V+CSDDLT+KIW D+ MQSG+
Sbjct: 170 EDGTGD-WHCVQSLGESNNGHSSTVWALAFNAEGNRMVTCSDDLTLKIWETDVGGMQSGN 228
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
SW HLCT+SGYHDRTIFSVHWSREGIIASGAADD+++FFVESKD L+DGPSYK+LLK
Sbjct: 229 DLVSWNHLCTLSGYHDRTIFSVHWSREGIIASGAADDALRFFVESKDGLVDGPSYKLLLK 288
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+EKAH+MD+NSVQW PGE LLAS SDDG IKIWE
Sbjct: 289 REKAHEMDINSVQWGPGETGLLASTSDDGTIKIWE 323
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462972|ref|XP_004149209.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein-like [Cucumis sativus] gi|449500925|ref|XP_004161232.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/276 (78%), Positives = 249/276 (90%), Gaps = 1/276 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSP+GKLLATASFDATT IWE+ GGDYECV+TLEGHENE+KSV+WNASG+L
Sbjct: 72 HTRTVRSCAWSPNGKLLATASFDATTAIWENTGGDYECVSTLEGHENEIKSVAWNASGSL 131
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RD++VWIWEV+PGNE+ECVSVLQGH QDVKMVQWHPTMD+LFSCSYDNT+KVW A
Sbjct: 132 LATCSRDRTVWIWEVLPGNEYECVSVLQGHTQDVKMVQWHPTMDLLFSCSYDNTVKVW-A 190
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D D+D+WHCVQT+ ESNNGHSST+WALSFNA GDK+VSCSDDLT+KIW D T++ S
Sbjct: 191 GDDDNDDWHCVQTLDESNNGHSSTVWALSFNATGDKMVSCSDDLTLKIWETDETKLHSEA 250
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
GY+ WRH CT+SGYHDRTIFSVHWSR GIIASGAADD+++ FVE+++ ID S+++L K
Sbjct: 251 GYSPWRHTCTLSGYHDRTIFSVHWSRNGIIASGAADDAIRLFVENQEKGIDRSSFQLLFK 310
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
KEKAH MDVNSVQWSPGE+ LLASASDDG I+IWEL
Sbjct: 311 KEKAHSMDVNSVQWSPGEKVLLASASDDGTIRIWEL 346
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822069|ref|XP_002878917.1| EMB1345 [Arabidopsis lyrata subsp. lyrata] gi|297324756|gb|EFH55176.1| EMB1345 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/278 (75%), Positives = 247/278 (88%), Gaps = 2/278 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSG+LLATASFD TT IW++ G +++C++TLEGHENEVKSVSWNASG+
Sbjct: 73 HTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFDCISTLEGHENEVKSVSWNASGSH 132
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCSYDNTIKVWW+
Sbjct: 133 LATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWS 192
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG DI RMQSG+
Sbjct: 193 EDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWGTDIARMQSGE 251
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SKDD +DGPSY +LLK
Sbjct: 252 DYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKDDSVDGPSYNLLLK 311
Query: 242 KEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 278
K KAH+ DVNSVQWSPGE RLLASASDDGM+KIW+LA
Sbjct: 312 KNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064776|ref|XP_002301557.1| predicted protein [Populus trichocarpa] gi|222843283|gb|EEE80830.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/276 (78%), Positives = 244/276 (88%), Gaps = 5/276 (1%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSGKLLATASFDATT IWE++ GD+ECV+TLEGHENEVKSVSWNASG+
Sbjct: 62 HTRTVRSCAWSPSGKLLATASFDATTSIWENISGDFECVSTLEGHENEVKSVSWNASGSF 121
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDK+VWIWEVMPGNEFEC SVLQGH QDVKMV+WHPTMDVLFSCSYDNT+KVW A
Sbjct: 122 LATCSRDKTVWIWEVMPGNEFECASVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKVW-A 180
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D WHC + +GHSST+WALSFNA+GD++V+CSDDLT+KIW D+ RM GD
Sbjct: 181 EDGTGD-WHCGCFLL---SGHSSTVWALSFNAEGDRMVTCSDDLTLKIWETDVGRMVLGD 236
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
+A W HLCT+SGYHDRTIFSVHWSREGIIASGAADD ++FF+E+KD L+DGPSYK+LLK
Sbjct: 237 DHAPWNHLCTLSGYHDRTIFSVHWSREGIIASGAADDGLRFFLENKDGLVDGPSYKLLLK 296
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+EKAH+MD+NSVQW PGE RLLAS SDDG IKIWEL
Sbjct: 297 REKAHNMDINSVQWGPGETRLLASTSDDGKIKIWEL 332
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18401018|ref|NP_565615.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|20197268|gb|AAC31230.2| expressed protein [Arabidopsis thaliana] gi|20260510|gb|AAM13153.1| unknown protein [Arabidopsis thaliana] gi|21553416|gb|AAM62509.1| unknown [Arabidopsis thaliana] gi|28059424|gb|AAO30057.1| unknown protein [Arabidopsis thaliana] gi|330252696|gb|AEC07790.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/278 (75%), Positives = 246/278 (88%), Gaps = 2/278 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSG+LLATASFD TT IW++ G ++EC++TLEGHENEVKSVSWNASG+
Sbjct: 73 HTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSC 132
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCSYDNTIKVWW+
Sbjct: 133 LATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWS 192
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG DI +MQSG+
Sbjct: 193 EDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWGTDIAKMQSGE 251
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SK D +DGPSY +LLK
Sbjct: 252 EYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSVDGPSYNLLLK 311
Query: 242 KEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 278
K KAH+ DVNSVQWSPGE RLLASASDDGM+KIW+LA
Sbjct: 312 KNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511053|ref|XP_003625815.1| hypothetical protein MTR_7g104550 [Medicago truncatula] gi|355500830|gb|AES82033.1| hypothetical protein MTR_7g104550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/278 (76%), Positives = 247/278 (88%), Gaps = 1/278 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSGKLLATASFDATT IWE+VGG++ECV+TLEGHENEVKSVSWNASGTL
Sbjct: 68 HTRTVRSCAWSPSGKLLATASFDATTAIWENVGGEFECVSTLEGHENEVKSVSWNASGTL 127
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV PGNEFECVSVLQGH QDVKMV+WHPT D+LFSCSYDN IKVW A
Sbjct: 128 LATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVW-A 186
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
++ DSD+W CVQT+ E NNGH+ST+WALSFNA GDK+V+CSDDLT+K+W + MQSG
Sbjct: 187 DEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETEHVGMQSGG 246
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
G+A WRH+CT++GYHDRTIFSVHWSR GI ASGAADD+++ FVE+ + +DGP YK+LLK
Sbjct: 247 GFAPWRHVCTLTGYHDRTIFSVHWSRGGIFASGAADDAIRLFVENNESQVDGPLYKLLLK 306
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
KEKAHDMD+N VQWS GE+ LLASASDDG IK+W+L +
Sbjct: 307 KEKAHDMDINYVQWSHGEKPLLASASDDGTIKVWDLVS 344
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116789145|gb|ABK25132.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/281 (73%), Positives = 240/281 (85%), Gaps = 6/281 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSP+GKLLATASFDATT IWE+VGG++EC+A+LEGHENEVKSVSW+ASG L
Sbjct: 79 HTRTVRSCAWSPNGKLLATASFDATTAIWENVGGEFECIASLEGHENEVKSVSWSASGML 138
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATCGRDKSVWIWEV PGNEFECVSVLQGH QDVKMVQWHPT D+L S SYDN+IKV WA
Sbjct: 139 LATCGRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPTRDILVSASYDNSIKV-WA 197
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ-SG 180
ED D D+W C+QT+ S +GH+ST+WA+SFN+ GD++VSCSDDLT+ +W I + SG
Sbjct: 198 EDGDGDDWACMQTLGSSISGHTSTVWAMSFNSSGDRMVSCSDDLTLMVWDTSINPAERSG 257
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD----LIDGPSY 236
+G W+HLCTISGYHDRTIFSVHWSR G+IASGA+DD ++ F ES DD +DGPSY
Sbjct: 258 NGCGPWKHLCTISGYHDRTIFSVHWSRGGLIASGASDDCIRLFSESTDDSATPQVDGPSY 317
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K++LKKEKAH MDVNSVQW P E +LLASASDDG IKIWE+
Sbjct: 318 KLILKKEKAHSMDVNSVQWHPSEPQLLASASDDGRIKIWEV 358
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802694|ref|XP_002869231.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315067|gb|EFH45490.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/279 (71%), Positives = 241/279 (86%), Gaps = 2/279 (0%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTV+S AWSPS KLLATASFD TTC+WE+ D E V+ L+ HE+EVKSVSWNASG+L
Sbjct: 67 HTRTVKSLAWSPSAKLLATASFDGTTCVWENFATDSESVSVLQVHESEVKSVSWNASGSL 126
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATCGRDKSVWIWEV+P NEF+C +VL GH++DVKMV WHPTMDVLFSCSYDNT+K+WW+
Sbjct: 127 LATCGRDKSVWIWEVLPENEFDCAAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTVKIWWS 186
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D ++CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIW DI+RMQSG+
Sbjct: 187 EDEYGD-YNCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTVKIWKTDISRMQSGE 245
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
GY W H+CT+SG+HDRTI+SVHWSR+G+IA GA DD++Q FV+S D +D PSYK+LLK
Sbjct: 246 GYVPWTHVCTLSGFHDRTIYSVHWSRDGVIACGAGDDTIQLFVDSNSDSVDRPSYKLLLK 305
Query: 242 KEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
KEKAH+ DVNSVQW+P E RLLAS SDD M+KIW+LA+
Sbjct: 306 KEKAHEKDVNSVQWAPDKESRLLASGSDDKMVKIWKLAS 344
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| TAIR|locus:2057381 | 352 | emb1345 "AT2G26060" [Arabidops | 0.982 | 0.784 | 0.751 | 1.9e-122 | |
| TAIR|locus:2123752 | 328 | AT4G32990 "AT4G32990" [Arabido | 0.914 | 0.783 | 0.697 | 3e-110 | |
| UNIPROTKB|A7RWD2 | 327 | v1g226592 "Probable cytosolic | 0.950 | 0.816 | 0.526 | 1.9e-83 | |
| UNIPROTKB|B4GDM7 | 335 | Ciao1 "Probable cytosolic iron | 0.971 | 0.814 | 0.533 | 1.1e-80 | |
| UNIPROTKB|Q292E8 | 335 | Ciao1 "Probable cytosolic iron | 0.964 | 0.808 | 0.533 | 3.7e-80 | |
| FB|FBgn0033972 | 335 | Ciao1 "Ciao1" [Drosophila mela | 0.964 | 0.808 | 0.533 | 1.6e-79 | |
| UNIPROTKB|B3NQR5 | 335 | Ciao1 "Probable cytosolic iron | 0.964 | 0.808 | 0.540 | 2e-79 | |
| UNIPROTKB|B4P7Q3 | 335 | Ciao1 "Probable cytosolic iron | 0.964 | 0.808 | 0.533 | 2.6e-79 | |
| UNIPROTKB|B4QFZ8 | 335 | Ciao1 "Probable cytosolic iron | 0.967 | 0.811 | 0.528 | 5.4e-79 | |
| UNIPROTKB|B4HRQ6 | 335 | Ciao1 "Probable cytosolic iron | 0.967 | 0.811 | 0.528 | 5.4e-79 |
| TAIR|locus:2057381 emb1345 "AT2G26060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 209/278 (75%), Positives = 246/278 (88%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HTRTVRSCAWSPSG+LLATASFD TT IW++ G ++EC++TLEGHENEVKSVSWNASG+
Sbjct: 73 HTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSC 132
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCSYDNTIKVWW+
Sbjct: 133 LATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWS 192
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG DI +MQSG+
Sbjct: 193 EDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWGTDIAKMQSGE 251
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SK D +DGPSY +LLK
Sbjct: 252 EYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSVDGPSYNLLLK 311
Query: 242 KEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 278
K KAH+ DVNSVQWSPGE RLLASASDDGM+KIW+LA
Sbjct: 312 KNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349
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| TAIR|locus:2123752 AT4G32990 "AT4G32990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 182/261 (69%), Positives = 224/261 (85%)
Query: 22 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP--G 79
SFD TC+WE+ D E V+ L GHE+EVKSVSWNASG+LLATCGRDKSVWIWE+ P
Sbjct: 67 SFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEED 126
Query: 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139
+EF+ ++VL GH++DVKMV WHPTMDVLFSCSYDNTIK+W +ED D D ++CVQT+SE N
Sbjct: 127 DEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGD-YNCVQTLSELN 185
Query: 140 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199
NGHSST+W++SFNA GDK+V+CSDDL +KIW DI+RMQSG+GY W H+CT+SG+HDRT
Sbjct: 186 NGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDISRMQSGEGYVPWTHVCTLSGFHDRT 245
Query: 200 IFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG- 258
I+SVHWSR+G+IASGA DD++Q FV+S D +DGPSYK+L+KKEKAH+MDVNSVQW+P
Sbjct: 246 IYSVHWSRDGVIASGAGDDTIQLFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQWAPDK 305
Query: 259 ERRLLASASDDGMIKIWELAN 279
E RLLASASDD M+KIW+LA+
Sbjct: 306 ESRLLASASDDKMVKIWKLAS 326
|
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| UNIPROTKB|A7RWD2 v1g226592 "Probable cytosolic iron-sulfur protein assembly protein" [Nematostella vectensis (taxid:45351)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 147/279 (52%), Positives = 197/279 (70%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+RS WSP G LA+ASFDATTCIW+ G++EC ATLEGHENEVKSV W+ SG+L
Sbjct: 49 HQRTIRSLGWSPCGTFLASASFDATTCIWDQKSGEFECNATLEGHENEVKSVDWSVSGSL 108
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATCGRDKSVWIWEV +E+EC SV+ H QDVK V WHPT ++L SCSYD+TIK++
Sbjct: 109 LATCGRDKSVWIWEVQEDDEYECASVIHSHTQDVKKVVWHPTKEILASCSYDDTIKLY-- 166
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
D D+W C T+ GH ST+W++SF+ GD++VSCSDD T++IW + Q G
Sbjct: 167 -KEDEDDWSCCDTLE----GHESTVWSISFDGSGDRIVSCSDDKTVRIWKSYPPGNQEGV 221
Query: 181 --DG-YASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
G + W+ +C +SGYHDRTI+ VHWS+ G+IA+ + DD ++ F E + + PS+
Sbjct: 222 VVSGKHTKWKCVCVLSGYHDRTIYDVHWSKVSGLIATASGDDCIRIFKEDTNSDRNQPSF 281
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+++ + KAH MDVNS+ W P + +LA+ SDDG +K+W
Sbjct: 282 QLVATQRKAHSMDVNSICWHPKDENILATCSDDGTVKLW 320
|
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| UNIPROTKB|B4GDM7 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 151/283 (53%), Positives = 194/283 (68%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
DSD W C T+S H+ST+W++ F+A+GD+LVSCSDD T+KIW A +G
Sbjct: 178 SQLDSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGI 232
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
D + W+ +CT+SG H R I+ V W + G+IA+G DD ++ F E+ D D P++
Sbjct: 233 ATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ L +E AH+ DVN+V+W+P L S SDDG IKIW++A+
Sbjct: 293 EQLTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKVAD 335
|
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| UNIPROTKB|Q292E8 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 150/281 (53%), Positives = 192/281 (68%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
DSD W C T+S H+ST+W++ F+A+GD+LVSCSDD T+KIW A +G
Sbjct: 178 SQLDSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGI 232
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
D + W+ +CT+SG H R I+ V W + G+IA+G DD ++ F E+ D D P++
Sbjct: 233 ATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AH+ DVN+V+W+P L S SDDG IKIW++
Sbjct: 293 EQLTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKV 333
|
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| FB|FBgn0033972 Ciao1 "Ciao1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 150/281 (53%), Positives = 190/281 (67%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT D+L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F ES D D P++
Sbjct: 233 ATPDQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
|
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| UNIPROTKB|B3NQR5 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 152/281 (54%), Positives = 190/281 (67%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT +VL S SYDNTIK++ A
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEVLASASYDNTIKMY-A 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
ED ++W C T++ H+STIW + F+A G++LVSCSDD TIKIW A +G
Sbjct: 177 EDPVDNDWDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTIKIWKAYHPGNSAGV 232
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQLTAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
|
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| UNIPROTKB|B4P7Q3 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 150/281 (53%), Positives = 189/281 (67%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIQWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT ++L S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEILASASYDNTIKMYAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG- 180
E D+D W C T++ H+STIW + F+A G++LVSCSDD T+KIW A +G
Sbjct: 178 EPIDND-WDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTVKIWRAYHPGNSAGV 232
Query: 181 ---DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
D W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ L +E AHD DVNSVQW+P L S SDDG IKIW++
Sbjct: 293 EQLTAEESAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333
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| UNIPROTKB|B4QFZ8 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 149/282 (52%), Positives = 191/282 (67%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT DVL S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWKAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ + W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + +E AHD DVNSVQW+P L S SDDG IKIW+++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334
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| UNIPROTKB|B4HRQ6 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 149/282 (52%), Positives = 191/282 (67%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RT+R WSP G+ LA+ASFDATT IW G++EC ATLEGHENEVKSVSW+ SG L
Sbjct: 58 HKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGL 117
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVWIWEV +EFEC +VL H QDVK V WHPT DVL S SYDNTIK++
Sbjct: 118 LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAE 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRM 177
E D+D W C T++ H+ST+W + F+A G++LVSCSDD TIKIW A + +
Sbjct: 178 EPIDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGV 232
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ + W+ +CT+SG H R I+ V W + G+IA+ DD ++ F E+ D D P++
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + +E AHD DVNSVQW+P L S SDDG IKIW+++
Sbjct: 293 EQITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B3MC74 | CIAO1_DROAN | No assigned EC number | 0.5195 | 0.9644 | 0.8089 | N/A | no |
| Q292E8 | CIAO1_DROPS | No assigned EC number | 0.5302 | 0.9644 | 0.8089 | yes | no |
| Q7K1Y4 | CIAO1_DROME | No assigned EC number | 0.5338 | 0.9644 | 0.8089 | yes | no |
| B5X212 | CIO1B_SALSA | No assigned EC number | 0.5018 | 0.9501 | 0.8018 | N/A | no |
| B4QFZ8 | CIAO1_DROSI | No assigned EC number | 0.5283 | 0.9679 | 0.8119 | N/A | no |
| B4JW81 | CIAO1_DROGR | No assigned EC number | 0.5195 | 0.9501 | 0.8066 | N/A | no |
| B4HRQ6 | CIAO1_DROSE | No assigned EC number | 0.5283 | 0.9679 | 0.8119 | N/A | no |
| B4LJT7 | CIAO1_DROVI | No assigned EC number | 0.5266 | 0.9501 | 0.8066 | N/A | no |
| B4MY77 | CIAO1_DROWI | No assigned EC number | 0.5231 | 0.9644 | 0.8089 | N/A | no |
| B4GDM7 | CIAO1_DROPE | No assigned EC number | 0.5300 | 0.9715 | 0.8149 | N/A | no |
| B4P7Q3 | CIAO1_DROYA | No assigned EC number | 0.5302 | 0.9644 | 0.8089 | N/A | no |
| A7RWD2 | CIAO1_NEMVE | No assigned EC number | 0.5195 | 0.9572 | 0.8226 | N/A | no |
| Q28DW0 | CIAO1_XENTR | No assigned EC number | 0.4855 | 0.9537 | 0.8048 | yes | no |
| B3NQR5 | CIAO1_DROER | No assigned EC number | 0.5373 | 0.9644 | 0.8089 | N/A | no |
| B4KTK4 | CIAO1_DROMO | No assigned EC number | 0.5338 | 0.9501 | 0.8066 | N/A | no |
| Q6P0D9 | CIAO1_DANRE | No assigned EC number | 0.5107 | 0.9395 | 0.8 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021618001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (344 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00021438001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (120 aa) | • | • | 0.637 | ||||||
 | GSVIVG00023613001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (542 aa) | • | 0.496 | |||||||
 | GSVIVG00001478001 | SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (379 aa) | • | 0.488 | |||||||
 | GSVIVG00025117001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa) | • | 0.487 | |||||||
 | GSVIVG00003091001 | SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (250 aa) | • | 0.482 | |||||||
 | GSVIVG00017915001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa) | • | 0.481 | |||||||
 | GSVIVG00003267001 | SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (283 aa) | • | 0.449 | |||||||
 | GSVIVG00018072001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa) | • | 0.443 | |||||||
 | GSVIVG00038827001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (332 aa) | • | 0.422 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-55 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 5e-55
Identities = 94/276 (34%), Positives = 145/276 (52%), Gaps = 37/276 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT VR A S G LA+ S D T +W+ G ECV TL GH + V SV+++ G +
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRI 107
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L++ RDK++ +W+V +C++ L+GH V V + P + S S D TIK+W
Sbjct: 108 LSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-- 162
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D CV T++ GH+ + +++F+ G+KL+S S D TIK+W
Sbjct: 163 ---DLRTGKCVATLT----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-------- 207
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ + L T+ G H+ + SV +S +G ++ASG+ D +++ + DL G + L
Sbjct: 208 ---TGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTL- 257
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
H V S+ WSP +R LAS S DG I+IW+
Sbjct: 258 ---SGHTNSVTSLAWSPDGKR-LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 4e-43
Identities = 96/279 (34%), Positives = 147/279 (52%), Gaps = 37/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V A+SP GKLLAT S D T +W D+ E + TL+GH V+ V+ +A GT
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVW-DLETG-ELLRTLKGHTGPVRDVAASADGTY 65
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LA+ DK++ +W++ G ECV L GH V V + P +L S S D TIKVW
Sbjct: 66 LASGSSDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW-- 120
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D ++ C+ T+ GH+ + +++F+ G + S S D TIK+W D+
Sbjct: 121 -DVETGK--CLTTL----RGHTDWVNSVAFSPDGTFVASSSQDGTIKLW--DL------- 164
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ + + T++G H + SV +S +G + S ++D +++ + DL G L
Sbjct: 165 --RTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----DLSTGKCLGTL- 215
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ H+ VNSV +SP LLAS S+DG I++W+L
Sbjct: 216 ---RGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRT 250
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-39
Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 27/224 (12%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT V S A+SP G++L+++S D T +W+ +C+ TL GH + V SV+++ GT
Sbjct: 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--VETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+A+ +D ++ +W++ +CV+ L GH +V V + P + L S S D TIK+W
Sbjct: 149 FVASSSQDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW- 204
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D C+ T+ GH + + +++F+ G L S S+D TI++W D+
Sbjct: 205 ----DLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSEDGTIRVW--DL------ 248
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFF 223
+ + T+SG H ++ S+ WS +G +ASG+AD +++ +
Sbjct: 249 ---RTGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-33
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 35/241 (14%)
Query: 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV 98
TL+GH V V+++ G LLAT D ++ +W++ G E + L+GH V+ V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDV 57
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
L S S D TI++W D + CV+T+ GH+S + +++F+ G L
Sbjct: 58 AASADGTYLASGSSDKTIRLW-----DLETGECVRTL----TGHTSYVSSVAFSPDGRIL 108
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217
S S D TIK+W + + + T+ G H + SV +S +G +AS + D
Sbjct: 109 SSSSRDKTIKVWDVETGKCLT-----------TLRG-HTDWVNSVAFSPDGTFVASSSQD 156
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+++ + DL G L H +VNSV +SP +LL S+S DG IK+W+L
Sbjct: 157 GTIKLW-----DLRTGKCVATL----TGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDL 206
Query: 278 A 278
+
Sbjct: 207 S 207
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 1e-24
Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 37/284 (13%)
Query: 2 HTRTVRSCAW-SPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
H +V A SP G + A S D T +W D+ + + TLEGH V S++++
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLW-DLSTPGKLIRTLEGHSESVTSLAFSPD 166
Query: 59 GTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTI 116
G LLA+ D ++ +W++ G + +S L GH V + + P +L S S D TI
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
++W D + + +GHS ++ + SF+ G L S S D TI++W +
Sbjct: 224 RLW-----DLSTGKL---LRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS 274
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
L T+SG H ++ SV +S +G ++ASG++D +V+ + L+
Sbjct: 275 ----------SLLRTLSG-HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS--- 320
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
K H+ V+S+ +SP L++ SDDG I++W+L
Sbjct: 321 ----SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-22
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 32/197 (16%)
Query: 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143
L+GH V V + P +L + S D TIKVW D + ++T GH+
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-----DLETGELLRT----LKGHT 51
Query: 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203
+ ++ +A G L S S D TI++W + + T++G H + SV
Sbjct: 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-----------VRTLTG-HTSYVSSV 99
Query: 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL 262
+S +G I++S + D +++ + D + K L + H VNSV +SP
Sbjct: 100 AFSPDGRILSSSSRDKTIKVW--------DVETGK-CLTTLRGHTDWVNSVAFSPDG-TF 149
Query: 263 LASASDDGMIKIWELAN 279
+AS+S DG IK+W+L
Sbjct: 150 VASSSQDGTIKLWDLRT 166
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.2 bits (235), Expect = 4e-22
Identities = 80/282 (28%), Positives = 132/282 (46%), Gaps = 35/282 (12%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT V S A+SP G L+A+ S D T +W D+ +TL GH + V S S++ G+
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLW-DLSTGKLLRSTLSGHSDSVVS-SFSPDGS 254
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
LLA+ D ++ +W++ + + L GH+ V V + P +L S S D T+++W
Sbjct: 255 LLASGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW- 311
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQS 179
D S + GH + +LSF+ G LV SDD TI++W
Sbjct: 312 ------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD-------- 357
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
+ + L T+ G+ + S +++SG+ D +V+ + S L+
Sbjct: 358 ---LRTGKPLKTLEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLL-------- 405
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
+ H V S+ +SP + + LAS S D I++W+L +L
Sbjct: 406 -RNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSL 445
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.2 bits (235), Expect = 4e-22
Identities = 76/283 (26%), Positives = 135/283 (47%), Gaps = 36/283 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW---NAS 58
H ++ S A+SP G+LL + S D T +W+ G+ + H++ V ++ + +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIK 117
LLA+ D +V +W+ + + L+GH++ V + + P +L S S D TIK
Sbjct: 124 SILLASSSLDGTVKLWD--LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITR 176
+W D + T++ GH+ + +L+F+ G + S S D TI++W
Sbjct: 182 LW-----DLRTGKPLSTLA----GHTDPVSSLAFSPDGGLLIASGSSDGTIRLW-----D 227
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSY 236
+ +G T+SG+ D + S ++ASG++D +++ + D S
Sbjct: 228 LSTGK-----LLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLW--------DLRSS 273
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
LL+ H V SV +SP +LLAS S DG +++W+L
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLET 315
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.6 bits (192), Expect = 2e-16
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 69
++SP G LLA+ S D T +W D+ + TL GH + V SV+++ G LLA+ D
Sbjct: 248 SFSPDGSLLASGSSDGTIRLW-DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG 306
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDN 128
+V +W++ + L+GH V + + P +L S D TI++W D
Sbjct: 307 TVRLWDL-ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW-----DLRT 360
Query: 129 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH 188
++T+ S + ++SF+ G + S S D T+++W +
Sbjct: 361 GKPLKTLE-----GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL----------- 404
Query: 189 LCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 247
L + G+ R +ASG++D++++ + S + K+ D
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSD 463
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.9 bits (172), Expect = 8e-14
Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 39/246 (15%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD--VKMVQ 99
L GHE+ + S++++ G LL + D ++ +W++ N + + L+G K+
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL--DNGEKLIKSLEGLHDSSVSKLAL 117
Query: 100 WHPTMDVLFSC--SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
P + + S D T+K+W S ++T+ GHS ++ +L+F+ G
Sbjct: 118 SSPDGNSILLASSSLDGTVKLW----DLSTPGKLIRTL----EGHSESVTSLAFSPDGKL 169
Query: 158 LVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASG 214
L S S D TIK+W + + L T++G H + S+ +S +G +IASG
Sbjct: 170 LASGSSLDGTIKLWDLR-----------TGKPLSTLAG-HTDPVSSLAFSPDGGLLIASG 217
Query: 215 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274
++D +++ + D + K+L H V S +SP + LLAS S DG I++
Sbjct: 218 SSDGTIRLW--------DLSTGKLLRSTLSGHSDSVVSS-FSP-DGSLLASGSSDGTIRL 267
Query: 275 WELANT 280
W+L ++
Sbjct: 268 WDLRSS 273
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (141), Expect = 6e-10
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145
+L+GH + + + P ++L S S D TIK+W + ++++ ++ S
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW----DLDNGEKLIKSLEGLHDSSVSK 114
Query: 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
+ S + L S S D T+K+W D + + T+ G H ++ S+ +
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLW----------DLSTPGKLIRTLEG-HSESVTSLAF 163
Query: 206 SREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL 263
S +G + + + D +++ + DL G L H V+S+ +SP L+
Sbjct: 164 SPDGKLLASGSSLDGTIKLW-----DLRTGKPLSTL----AGHTDPVSSLAFSPDGGLLI 214
Query: 264 ASASDDGMIKIWELAN 279
AS S DG I++W+L+
Sbjct: 215 ASGSSDGTIRLWDLST 230
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (127), Expect = 4e-08
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166
+ + S GH +I +++F+ G+ L+S S D T
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88
Query: 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW----SREGIIASGAADDSVQF 222
IK+W D + ++ G HD ++ + ++AS + D +V+
Sbjct: 89 IKLWDLDNGEKL----------IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138
Query: 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ D + L++ + H V S+ +SP + L + +S DG IK+W+L
Sbjct: 139 W--------DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-07
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75
E + TL+GH V SV+++ G LA+ D ++ +W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-07
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 74
+ + TL+GH V SV+++ G LLA+ D +V +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-06
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
E + L+GH V V + P L S S D TIK+W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ + L+GH V V + P ++L S S D T++VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ ++T+ GH+ + +++F+ G L S SDD TIK+W
Sbjct: 1 SGELLKTLK----GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 8e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW 30
HT V S A+SP G LLA+ S D T +W
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
GH+ + +++F+ G+ L S SDD T+++W
Sbjct: 9 GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 1e-04
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
LL+ K H V SV +SP + LLAS SDDG +++W
Sbjct: 3 LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 40 VATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVS-------VLQGH 91
V L+GH + + + +N +LA+ D ++ +WE+ P N+ E V +L+GH
Sbjct: 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHND-ESVKEIKDPQCILKGH 124
Query: 92 AQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED 123
+ + ++ W+P M+ ++ S +D+ + +W E+
Sbjct: 125 KKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 2e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE 31
HT V S A+SP GK LA+ S D T +W+
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 2e-04
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
K H V SV +SP + + LAS SDDG IK+W+
Sbjct: 9 KGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 45 GHENEVKSVSWNA-SGTLLATCGRDKSVWIW----EVMPGNEFECVSVLQGHAQDVKMVQ 99
G E + V++N L T D ++ W E + N + + LQGH + V +V
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 100 WHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
+HP+ M+VL S D + VW D + V+ I HS I +L +N G L
Sbjct: 133 FHPSAMNVLASAGADMVVNVW-----DVERGKAVEVIK----CHSDQITSLEWNLDGSLL 183
Query: 159 VSCSDDLTIKI 169
+ S D + I
Sbjct: 184 CTTSKDKKLNI 194
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.83 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.78 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.76 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.75 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.67 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.6 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.59 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.56 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.47 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.43 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.33 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.32 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.32 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.3 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.29 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.28 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.24 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.24 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.19 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.18 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.17 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.16 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.16 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.15 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.09 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.09 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.08 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.08 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.03 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.03 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.03 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.02 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.02 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.99 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.94 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.94 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.91 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.91 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.86 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.86 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.79 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.78 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.76 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.76 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.74 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.72 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.71 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.69 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.65 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.65 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.63 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.53 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.51 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.5 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.46 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.4 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.39 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.38 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.32 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.21 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.2 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.13 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.11 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.05 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.04 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.98 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.93 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.89 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.88 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.85 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.84 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.73 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.65 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.57 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.52 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.47 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.44 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.34 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.34 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.28 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.27 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.23 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.18 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.12 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.1 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.1 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.02 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.0 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.98 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.92 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.84 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.81 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.78 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.71 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.68 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.64 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.62 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.6 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.49 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.42 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.39 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.37 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.23 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.23 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.18 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.15 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.03 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.91 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.77 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.7 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.68 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.44 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.37 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.34 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.27 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.12 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.93 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.72 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.71 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.56 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.54 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.52 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.17 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.83 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.81 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.56 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.31 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.23 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.12 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.7 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.46 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.27 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.27 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 91.97 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 91.9 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.72 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.69 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 91.51 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.29 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.74 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.71 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.64 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.64 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.19 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 90.17 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.81 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.35 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.09 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.74 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 88.17 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.96 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.77 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 87.65 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 87.62 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.55 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.31 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.13 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 87.07 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 86.06 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.74 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.6 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.15 | |
| COG5308 | 1263 | NUP170 Nuclear pore complex subunit [Intracellular | 84.71 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 84.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 84.29 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.53 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 83.28 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.75 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 82.17 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 82.0 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.6 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 81.22 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 81.21 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 80.96 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.2 |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=293.79 Aligned_cols=252 Identities=60% Similarity=1.111 Sum_probs=227.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|+.++|+|.|++||+||.|.++.||....++++++.+++||..+|.|++|+++|++||+++.|++|.+|.+..+.+
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+++..+++.|...|..+.|||+..+|+++|.|++||+|+-+. .+.|.+++++. +|...|++++|++.|..|++|
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~----g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLD----GHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEec----CccceEEEEEecCCCceEEEe
Confidence 999999999999999999999999999999999999997664 45688888775 788899999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|++++||... +.++..|.+++..+.|. ++.+++++.|+.+++|... +-.+.+.++.+..
T Consensus 214 sdD~tv~Iw~~~----------------~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s--~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 214 SDDGTVSIWRLY----------------TDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKES--DSPDEPSWNLLAK 274 (312)
T ss_pred cCCcceEeeeec----------------cCcchhcccceEeeeec-ccceEeccCCCEEEEEEec--CCCCCchHHHHHh
Confidence 999999999421 23345578889999998 8999999999999999765 2234566666677
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....|+..|+++.|+|..+.+|++|++||.|++|++.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7889999999999999767789999999999999975
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=267.16 Aligned_cols=254 Identities=29% Similarity=0.523 Sum_probs=204.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++|+|+|+.||||+.|.++++||..+.. +.++.++|..-|.|++|+|||..||+|+.||+|++||-..+++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 78899999999999999999999999999998764 5789999999999999999999999999999999999877764
Q ss_pred eEEeEeecCCccceeEEEecCC-----CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~-----~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.-..+.+|...|++++|.|- ...++++|.||+|+|||+... .++..+ .+|+.+|+|++|-.++
T Consensus 192 --~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-----~~~~~l----sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 192 --IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-----TCVRTL----SGHTASVTCVRWGGEG- 259 (480)
T ss_pred --ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-----eEEEEe----ccCccceEEEEEcCCc-
Confidence 35678999999999999874 458999999999999987653 244444 5999999999997665
Q ss_pred EEEEeeCCCcEEEEeCCccccc---------------------------cCCCC--------------------------
Q 023500 157 KLVSCSDDLTIKIWGADITRMQ---------------------------SGDGY-------------------------- 183 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~---------------------------~~~~~-------------------------- 183 (281)
++++|+.|++|++|+...+.+- .....
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999975421100 00000
Q ss_pred -------c--ccc------eeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCC
Q 023500 184 -------A--SWR------HLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 247 (281)
Q Consensus 184 -------~--~~~------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 247 (281)
. .|+ ++..+. .|...|..+.|+|++ ++++++-|+++++|+-..+ .++...++|-
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv 409 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHV 409 (480)
T ss_pred EEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhcc
Confidence 0 000 011111 256678899999987 5788889999999965432 3456678999
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..|..++|+.+. +++++||.|.+|++|+++..
T Consensus 410 ~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 410 AAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ceeEEEEeccCc-cEEEEcCCCceEEEEEeeee
Confidence 999999999986 58999999999999998753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=272.15 Aligned_cols=241 Identities=27% Similarity=0.452 Sum_probs=207.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
+++|..+.|++++++|||||++|.+++|+.... ..+.++.||...|-++.|+|. +..|+||+.||++++|++.+..
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 478999999999999999999999999987655 457789999999999999996 5689999999999999997653
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++..+.+|...|..|+|||+|++|+|+|.|.+.++||++.... .....||...|.+++|+|||.+++|
T Consensus 253 ---~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 253 ---PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ---chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh---------hHhhcccccccceeEecCCCceeec
Confidence 4667899999999999999999999999999999999986531 1223699999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|..-++||++.+. .+..+. .|..+|.++.|+|+|+ +++|+.|+++++|++.+.. .
T Consensus 321 GGlD~~~RvWDlRtgr-----------~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------~ 379 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGR-----------CIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------E 379 (459)
T ss_pred cCccchhheeecccCc-----------EEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecccc---------c
Confidence 9999999999998653 233333 4899999999999986 8889999999999876531 2
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+|..-|+.+.|+|+..++|+|+|.|++++||.-.
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 344568999999999999777889999999999999854
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=261.27 Aligned_cols=239 Identities=28% Similarity=0.456 Sum_probs=205.6
Q ss_pred CccceeEEEEcCC--CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~--~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|+..|.++.|+|. +.-||||+.||+++||+..+. .++..+++|...|..++|+|+|++|+|++.|.+-++||+...
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 7889999999996 568999999999999987665 468899999999999999999999999999999999999766
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.+ ..-..||...|.+++|+|+|.+++||+.|..-+|||+.+.+ ++..+. +|..+|..++|+|+|..|+
T Consensus 294 ~E---lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-----~im~L~----gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 294 SE---LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-----CIMFLA----GHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred hh---hHhhcccccccceeEecCCCceeeccCccchhheeecccCc-----EEEEec----ccccceeeEeECCCceEEe
Confidence 54 23357999999999999999999999999999999887653 555553 7999999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-C-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-E-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
||+.|++++|||++... .+.++. .|...|..+.++| . .++++++.|+++++|.... .
T Consensus 362 Tgs~Dnt~kVWDLR~r~-----------~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---------~ 420 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRS-----------ELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---------W 420 (459)
T ss_pred ecCCCCcEEEeeecccc-----------cceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCC---------c
Confidence 99999999999987543 233333 4788899999997 3 3789999999999995533 2
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++...+|+..|.++..+|++. .++|++.|.++++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 44566789999999999999876 688999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=252.53 Aligned_cols=248 Identities=30% Similarity=0.595 Sum_probs=201.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-----CCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-----SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~~l~s~~~d~~v~~w~~ 76 (281)
|..-|.|++|+|||+.||+|+.||+|++||+.+++. ....+.+|...|++++|.| .+++|+++|.||++++||+
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 778899999999999999999999999999988764 3568899999999999965 4679999999999999998
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC-----C--Cc--------------------
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-----D--NW-------------------- 129 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~-----~--~~-------------------- 129 (281)
..+ .++..+.+|...|+|++|..+ .+++++|.|++||+|+..+... . .|
T Consensus 235 ~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 235 KLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred cCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 655 467889999999999999875 4899999999999998764100 0 00
Q ss_pred -eeeeee------------------------------------------eeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 130 -HCVQTI------------------------------------------SESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 130 -~~~~~~------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
++.... .....+|...|+.+.|+||++++++++-|..
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 000000 0011379999999999999999999999999
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
|++|+.+.++... +++ .|-.+|..++|+.+. ++++|+.|.++++|+++.. .+.....+
T Consensus 391 VkLW~g~tGk~la-----sfR-------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpG 449 (480)
T KOG0271|consen 391 VKLWDGRTGKFLA-----SFR-------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPG 449 (480)
T ss_pred eeeeeCCCcchhh-----hhh-------hccceeEEEEeccCccEEEEcCCCceEEEEEeeee---------eecccCCC
Confidence 9999987665431 111 366789999999875 6889999999999987642 23445678
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|...|.++.|+|+|+ .+++|+.|..+++|.
T Consensus 450 h~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 999999999999987 488999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=238.15 Aligned_cols=249 Identities=22% Similarity=0.377 Sum_probs=195.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..++.++||++++++++|+.+++||..+++ ....|.||...|.+++|+||.++|+|||.|++|++|++....
T Consensus 62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c- 138 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC- 138 (315)
T ss_pred cceEecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-
Confidence 78899999999999999999999999999998874 467889999999999999999999999999999999986443
Q ss_pred eEEeEeecC--CccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 82 FECVSVLQG--HAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 82 ~~~~~~~~~--~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
..+... +.+.|.|++|+|+ ..+|+++|+|++||+|+.+.-. +.....||+..++.+.+||||..
T Consensus 139 ---k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~~~gh~~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 139 ---KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTTFIGHSGYVNTVTVSPDGSL 206 (315)
T ss_pred ---EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhccccccccEEEEEECCCCCE
Confidence 333333 3788999999998 5689999999999999776432 22334589999999999999999
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
.++|+.||.+.+||++.++ .+. .-.+..+|.+++|+|+.+.++...+.++++|+............+
T Consensus 207 casGgkdg~~~LwdL~~~k-----------~ly--sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGK-----------NLY--SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EecCCCCceEEEEEccCCc-----------eeE--eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 9999999999999987432 122 223678899999999999998899999999976543322211111
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..-...+...-.-..++|+++|..+ .+|=.|+.|++|++..
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tL-f~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVAK 314 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEeec
Confidence 1000111112224668999999765 4788899999999864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=250.58 Aligned_cols=243 Identities=28% Similarity=0.550 Sum_probs=203.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|+++.|+++|.++++|+.+|.|++|+.+-+. ++.+.+|. +.|++++|+|....++++|+|++|++||.....
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 88999999999999999999999999999876553 44555555 999999999999999999999999999987554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+ ..++.+|.-.|+++.|||...+++++|.|+.|++||..+. .|+.++. +|...|..+.|+|++.+|++
T Consensus 214 e---e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-----~cl~tlh----~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 214 E---ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-----SCLATLH----GHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred h---hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-----chhhhhh----hccceEEEEEEcCCCCeeEE
Confidence 3 4567999999999999999999999999999999977654 3555554 68999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
++.|..++++|+..-+ .+..+ ..|...+.++.|+| .+++.+|+.|+.+..|.+.... .
T Consensus 282 ~skD~~~kv~DiR~mk-----------El~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--------p 341 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMK-----------ELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--------P 341 (464)
T ss_pred ccCCceEEEEehhHhH-----------HHHHh-hcchhhheeeccccccccceeeccCCCceEEEeccccc--------c
Confidence 9999999999986211 11111 13778899999998 6789999999999999775221 2
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.....+|...|++++|+|-| .+|++|+.|.++|+|....+
T Consensus 342 ~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 342 LGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCCC
Confidence 233456899999999999987 58999999999999986554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=225.46 Aligned_cols=246 Identities=30% Similarity=0.623 Sum_probs=204.0
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecC-CCceeeeeee-cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDV-GGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~-~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+.|+.++|+|- |.+||||+.|+.|+||+.. ...+.|...+ .+|+..|++++|+|.|++|++||.|.++-+|.-.
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~- 91 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE- 91 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-
Confidence 6788999999997 9999999999999999987 4556666655 4799999999999999999999999999999753
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+++++.++.+|..+|.|++|++++.+||++|.|.+|-+|.+... +.+.|..-+ ..|+.-|..+.|+|...+|
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded--dEfec~aVL----~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED--DEFECIAVL----QEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC--CcEEEEeee----ccccccccEEEEcCCccee
Confidence 5678899999999999999999999999999999999999988733 234444434 3699999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++++-|.+|++|.... ...|....++. .|..+|.++.|++.| .+++++.|+++++|...
T Consensus 166 ~S~SYDnTIk~~~~~~--------dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----------- 225 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDED--------DDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----------- 225 (312)
T ss_pred EEeccCCeEEEEeecC--------CCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec-----------
Confidence 9999999999996431 12244444443 467799999999977 78999999999999322
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..-...|+.++..++|. ++ +|+|++.|+.|+||.-..
T Consensus 226 --~~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 226 --TDLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred --cCcchhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 11234688899999998 33 699999999999997543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=224.04 Aligned_cols=239 Identities=26% Similarity=0.412 Sum_probs=198.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC----ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
.-|..++|+|+|+++|+|+-|+.+.||+..+. .......+.+|++.+.|+.|-+ ..+|+|+|.|.+.-+||+..+
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc
Confidence 35788999999999999999999999997643 2233466889999999999977 578999999999999999876
Q ss_pred CeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+ .+..+.+|...|.++.+.| +++++++|+.|...++||+... .+++.+. +|...|++++|.|+|.-+
T Consensus 177 ~---~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~qtF~----ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 177 Q---QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQTFE----GHESDINSVRFFPSGDAF 244 (343)
T ss_pred e---EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeEeec----ccccccceEEEccCCCee
Confidence 5 4678899999999999999 8999999999999999988765 3666664 899999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
++|+.|+++|+||++..+. +..+.. .-..+|.++.|+..| ++++|..|..+.+|+.-+..
T Consensus 245 atGSDD~tcRlyDlRaD~~-----------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e------- 306 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQE-----------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE------- 306 (343)
T ss_pred eecCCCceeEEEeecCCcE-----------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-------
Confidence 9999999999999864321 222221 124578899999887 46677889999999765431
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
......+|+.+|.++..+|+|. -++|||.|..||||.
T Consensus 307 --~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 --RVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred --eEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 2344569999999999999986 589999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=252.02 Aligned_cols=243 Identities=23% Similarity=0.422 Sum_probs=203.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------------------------ceeeeeeecCCCCCeeEEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------------DYECVATLEGHENEVKSVS 54 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-----------------------------~~~~~~~~~~h~~~v~~v~ 54 (281)
..++|+.|++|+.+||.|-.|-.|++|..... ......++-||.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 56899999999999999999999999975421 0112345779999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
|+|+.++|+++|.|.++|+|.+... .++-.+++|..+|..+.|+|-|-+++|+|.|++.++|...... ..
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-----Pl-- 528 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-----PL-- 528 (707)
T ss_pred ecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----ch--
Confidence 9999999999999999999998643 4667788999999999999999999999999999999766532 11
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 213 (281)
....+|.+.|-|+.|+|+..++++|+.|.++|+||+..+.. ...+ ..|..+|.++.++|+| ++++
T Consensus 529 --RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----------VRiF-~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 529 --RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----------VRIF-TGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred --hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----------EEEe-cCCCCceEEEEEcCCCceEee
Confidence 22348999999999999999999999999999999864421 2233 3599999999999988 5888
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
|+.|+.+.+|+...+. .+....+|++.|.++.|+.+|. +|++||.|..|++||+...
T Consensus 595 g~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhh
Confidence 9999999999876532 2345568899999999999875 7899999999999998654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=250.67 Aligned_cols=200 Identities=30% Similarity=0.540 Sum_probs=175.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++|..+.|+|+.++|+++|+|.+++||...+. .++..++||..+|+++.|+|.|.++||+|.|++.++|.....
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-- 525 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-- 525 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC--
Confidence 8899999999999999999999999999988765 467788899999999999999999999999999999998654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.+++.+|-+.|.|++|||+.+++++||.|.+|++||+..+. .++.+ .||.++|.+++|+|+|.+|++|
T Consensus 526 -~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF----~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 526 -KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIF----TGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred -CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEe----cCCCCceEEEEEcCCCceEeec
Confidence 4578899999999999999999999999999999999987764 23333 5899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+.||.|++||+..+.+. ..+. .|...+.+++|+.+| .+++++.|.++++|+...
T Consensus 596 ~ed~~I~iWDl~~~~~v-----------~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLV-----------KQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcch-----------hhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999998754321 1222 368899999999875 788999999999998753
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=214.96 Aligned_cols=244 Identities=28% Similarity=0.403 Sum_probs=197.1
Q ss_pred CCccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCce---eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 1 MHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 1 ~h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.|++.|+.++..+. .+++.+++.|..+.+|+....+. .+++.++||...|..+..+++|++++++|.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 38899999999997 46899999999999998754332 247789999999999999999999999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-- 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 154 (281)
..++ +...+.+|...|.+++|+|+...+++||.|.+|++|++... |..++.. ..++..|.|++|+|+
T Consensus 93 ~~g~---~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~------ck~t~~~--~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 93 ATGE---STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV------CKYTIHE--DSHREWVSCVRFSPNES 161 (315)
T ss_pred cCCc---EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc------EEEEEec--CCCcCcEEEEEEcCCCC
Confidence 8764 45678899999999999999999999999999999976542 4444432 234789999999998
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
..++++++.|+++++||.+..+. ...+. .|..-+..+.++|+| ..++|+.|+.+.+|+++..
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l-----------~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~----- 224 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQL-----------RTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG----- 224 (315)
T ss_pred CcEEEEccCCceEEEEccCCcch-----------hhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC-----
Confidence 56999999999999998864322 11222 367788999999998 5678889999999977543
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+. ...|...|++++|+|+ + +.++++.+..|+|||+..
T Consensus 225 ---k~ly--sl~a~~~v~sl~fspn-r-ywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 225 ---KNLY--SLEAFDIVNSLCFSPN-R-YWLCAATATSIKIWDLES 263 (315)
T ss_pred ---ceeE--eccCCCeEeeEEecCC-c-eeEeeccCCceEEEeccc
Confidence 1121 2367889999999996 3 345677778899999865
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=212.31 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=198.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
...|+.+.+.|+++.||.+++ ..|+|||.+.+...++.++++|++.|.++.|..+|++++|||+||++|+||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence 367999999999999998875 4699999988777789999999999999999999999999999999999999762
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.+.+.+ .|.+.|+++..||+...|++|..+|.|++||+.... |...+.. .-...|.++...|+|.+|+.+-
T Consensus 116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-----c~~~liP---e~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-----CTHELIP---EDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc-----cccccCC---CCCcceeeEEEcCCCcEEEEec
Confidence 344443 567899999999999999999999999999986531 1111211 1235689999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
..|.+.+|++-.. +....+.++..+. .|..-+..+.++|++ +++++++|+++++|.... . ...-.
T Consensus 187 nkG~cyvW~l~~~-----~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~--~------~kle~ 252 (311)
T KOG0315|consen 187 NKGNCYVWRLLNH-----QTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD--F------FKLEL 252 (311)
T ss_pred CCccEEEEEccCC-----CccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCC--c------eeeEE
Confidence 9999999986431 1222234444443 477888899999976 788999999999995532 1 12223
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+|..++++++||.++. +|++|+.|+.+|+|++..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSA 289 (311)
T ss_pred EeecCCceEEeeeeccCcc-EEEecCCCCceeeccccc
Confidence 4568999999999999986 567999999999999875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=230.63 Aligned_cols=256 Identities=27% Similarity=0.444 Sum_probs=194.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec-CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED-VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|+.+.|+++|++||+++.|.+..+|+. ....++..+++.+|..+|.-+.||||.++|+++|.|..+++||...+.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 7899999999999999999999999999986 344577789999999999999999999999999999999999998775
Q ss_pred eeEEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.. ..+ .++.-.+.+++|.|++..+++|+.|+++..|+.+......|+.++ ...|.+++..+||++++
T Consensus 303 ~~---~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 303 LR---HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------DPKVHDLAITYDGKYVL 370 (519)
T ss_pred hh---hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------cceeEEEEEcCCCcEEE
Confidence 32 111 234567899999999999999999999999998876555554332 24589999999999999
Q ss_pred EeeCCCcEEEEeCCcccc----ccCCCCcc--------------------------cceeEEeecccCc--ceEEEEeC-
Q 023500 160 SCSDDLTIKIWGADITRM----QSGDGYAS--------------------------WRHLCTISGYHDR--TIFSVHWS- 206 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~----~~~~~~~~--------------------------~~~~~~~~~~~~~--~v~~~~~~- 206 (281)
+.+.|..|++++.+..-. ...++..+ ++....+. .|.. -+..-+|.
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGG 449 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCC
Confidence 999999999997642210 00000000 00000000 0111 11111222
Q ss_pred -CCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 207 -REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 207 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+.++++|+.|..+++|....+ ..+....+|...|++++|+|.++.++||+|+||+||||....
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCcceEEecCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2457999999999999966543 234556799999999999999999999999999999998763
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=228.19 Aligned_cols=244 Identities=33% Similarity=0.610 Sum_probs=204.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|..+|+.+-|+|+-.++++++.|.+|++||..+++. ...++||...|.+|+|+..|++|++++.|-.+++||....
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-- 182 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-- 182 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence 567899999999999999999999999999988865 6789999999999999999999999999999999998643
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+|++.+.+|...|.++.|-|.+++++|++.|.+|+.|++... .|+.++. +|+..|..++.+.||..+++|
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-----~cv~t~~----~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-----YCVKTFP----GHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-----eeEEecc----CchHhEEEEEecCCeeEEEec
Confidence 4577788899999999999999999999999999999988764 3666664 799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC----------------ceeeecCCCCcEEEEec
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE----------------GIIASGAADDSVQFFVE 225 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~~~~d~~~~~~~~ 225 (281)
+.|.++++|-...++.... .+ .|..++-+++|-|. .++.+++.|+++++|++
T Consensus 254 s~dqtl~vW~~~t~~~k~~-----lR-------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAE-----LR-------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred CCCceEEEEEeccchhhhh-----hh-------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 9999999997664422110 01 24455555555431 26889999999999977
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
... +++....+|..+|..++|+|.|+ +|+|+++|++|++||+.+.
T Consensus 322 ~tg---------~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 322 STG---------MCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNL 366 (406)
T ss_pred cCC---------eEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccc
Confidence 542 34555679999999999999886 5789999999999999864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=228.18 Aligned_cols=258 Identities=23% Similarity=0.418 Sum_probs=197.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+.|+|+.|+|||+++||.+.||++.|||-.+++. +..+. +|++.|++++|+||+.+++|+|+|.++|+||+..
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 788999999999999999999999999999877754 55665 8999999999999999999999999999999864
Q ss_pred CCee----------------------------------------EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 79 GNEF----------------------------------------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 79 ~~~~----------------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
..-. ....++.+|...|+++..+|++.+|++|+.||.|.-
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 3210 012246799999999999999999999999999999
Q ss_pred EeCCCCCCCCc------eeeeeeee------------------------------------cc-----------------
Q 023500 119 WWAEDTDSDNW------HCVQTISE------------------------------------SN----------------- 139 (281)
Q Consensus 119 w~~~~~~~~~~------~~~~~~~~------------------------------------~~----------------- 139 (281)
|+......... ..+..+.. +.
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 98765422110 00000000 00
Q ss_pred -----C--------CccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC
Q 023500 140 -----N--------GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 140 -----~--------~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
. .-.-.+.+++++|++..++.|+.|+.+.+|.+...... ... ...-|..++.+++++
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~--------ee~--~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK--------EEA--KLLEHRAAITDVAYS 496 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc--------cee--eeecccCCceEEEEC
Confidence 0 00133568899999999999999999999977532211 000 112378899999999
Q ss_pred CCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 207 REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 207 ~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
|++ +++++-..+.+.+|+..... ........|...|++++|+|++. ++|||+.|..|.||++.+|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~--------~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASRE--------VKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCc--------eecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 987 56666678899999775431 12344566999999999999875 7999999999999999876
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=235.11 Aligned_cols=239 Identities=24% Similarity=0.488 Sum_probs=196.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
-.|..+.|.|+|+.|++|+..|...||+...-.+ ...+.+|+.+|.++.|+++|.+++||+.+|.|++|+..-..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF--EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF--ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeH--HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 3688999999999999999999999997643322 34557899999999999999999999999999999864222
Q ss_pred EeEeecC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
+..+.+ |...|++++|+|+...++++|.||+|+|||......+ ....||.-.|.+++|+|...++++++
T Consensus 172 -Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee---------~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 172 -VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE---------RVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred -hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh---------heeccCCCCcceeccCCccceeEEcc
Confidence 333444 4589999999999999999999999999987654321 12258999999999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
.|..|++||.+.+.+ ++++. .|...|..+.|.++ ..+++++.|.++++++++. .+ .+.
T Consensus 242 kDnlVKlWDprSg~c-----------l~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~--------mk-El~ 300 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSC-----------LATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT--------MK-ELF 300 (464)
T ss_pred CCceeEeecCCCcch-----------hhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhH--------hH-HHH
Confidence 999999999886532 22222 37888999999986 4899999999999997751 11 133
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..++|+..|++++|+|-...+|.+|+.||.|..|.+.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 4578999999999999988899999999999999876
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=225.67 Aligned_cols=239 Identities=31% Similarity=0.537 Sum_probs=190.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
++.|++++|+.+|.+||+|+.||.++||+..+. .+.++..|.++|.+++|+..|.+|++++.|+++.+||...+..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~- 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV- 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-
Confidence 478999999999999999999999999987654 3567888999999999999999999999999999999866543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
...+.-|....-.|.|-. ...+++++.|+.|+|+.+.... ++.++ .+|...|.++.|+|.+.+|++|+
T Consensus 311 --~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~-----P~~t~----~GH~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 311 --KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR-----PVKTF----IGHHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred --EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCC-----cceee----ecccCceEEEEECCCCceEEEec
Confidence 233445665545667754 4578999999999999876543 22333 37999999999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc----------eeeecCCCCcEEEEecccCCCcC
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----------IIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
.|+++++|...-.... ..+ ..|...|.++.|+|.+ ++++++.|..+++|++...
T Consensus 379 dD~TlkiWs~~~~~~~-----------~~l-~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSNSV-----------HDL-QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCeeEeeecCCCcch-----------hhh-hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 9999999976422110 011 1367888899998854 6889999999999977542
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .......|..+|.+++|+|+++ ++|+|+.||.|.||+...
T Consensus 443 -v----~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 443 -V----PIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKT 483 (524)
T ss_pred -c----eeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccc
Confidence 1 2233557999999999999876 689999999999998753
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=220.16 Aligned_cols=242 Identities=25% Similarity=0.438 Sum_probs=200.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+-|.|+++.|..++|+||+.|++|+|||..+++. ..++.||-+.|..+++|+...++++++.|+.|+.||+...
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n- 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN- 225 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE--EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh-
Confidence 4888999999999999999999999999999998864 5688999999999999999999999999999999999644
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+.++.+-+|-+.|.|++.+|+.+.|++|+.|.++++||+....+ +.. ..||+..|..+.+.|....+++
T Consensus 226 --kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-----V~~----l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 226 --KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-----VHV----LSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred --hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-----EEE----ecCCCCcceeEEeecCCCceEE
Confidence 35677889999999999999999999999999999999876532 222 2589999999999998889999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
|+.|++|++||..-++ ..+... .|...+.+++.+|...+.+.+....++-|.+.++ ..+
T Consensus 295 ~S~D~tvrlWDl~agk-----------t~~tlt-~hkksvral~lhP~e~~fASas~dnik~w~~p~g---------~f~ 353 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGK-----------TMITLT-HHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---------EFL 353 (460)
T ss_pred ecCCceEEEeeeccCc-----------eeEeee-cccceeeEEecCCchhhhhccCCccceeccCCcc---------chh
Confidence 9999999999986442 122222 3788999999999765444444446777855443 233
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....+|...|++++.+.++ ++++|++.|.+.+||...
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCc
Confidence 4466899999999998875 577999999999999765
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=212.46 Aligned_cols=243 Identities=21% Similarity=0.344 Sum_probs=197.2
Q ss_pred ccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
++.+..++|+++- ..+++++.||+++|||... +..++..+++|..+|.++.|++ +.+.++++|.|++||+|+....+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3668899999965 5778899999999999543 3357889999999999999999 56678899999999999976554
Q ss_pred eeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 158 (281)
.+.++.+|...|..++|+|. .++++++|.|+++++||+..... .. ...+|...+.+++|+. +...|
T Consensus 139 ---Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~-----~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 ---SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FM-----SIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ---ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----ee-----EEEeccceeEeecccccCCcEE
Confidence 36779999999999999996 56899999999999999876531 11 1236888999999986 56789
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+||+.|+.|+.||++..+ .++..+ ..|...|+.+.|+|- .++++++.|-++|+|+...++.
T Consensus 207 ~Tg~vd~~vr~wDir~~r----------~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------ 269 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLR----------TPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------ 269 (311)
T ss_pred EecCCCceEEEEehhhcc----------ccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccchh------
Confidence 999999999999986432 223333 247888999999984 5899999999999997764322
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.......|++-+..+.|++..+.++|+++.|+.++||+.
T Consensus 270 --~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 --AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 233445788999999999987788999999999999985
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=234.70 Aligned_cols=248 Identities=29% Similarity=0.495 Sum_probs=195.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.++.|+|+|+++++++.|+.+++|+....+......+.+|...|.+++|+|+|+++++++.|+++++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~- 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG- 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence 4688999999999999999999999999988544322455668999999999999999999999999999999993332
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+++++.+|...|++++|+|+++++++|+.|++|++|+++.. .+...+ .+|...|.+++|++++.+|+++
T Consensus 237 -~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-----~~~~~l----~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 237 -RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-----ECVRKL----KGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred -eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-----eEEEee----eccCCceEEEEECCCCCEEEEc
Confidence 457889999999999999999999999999999999988763 244444 4799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCc-ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|+.|++||+..+... ....+...... ++.++.|++++ +++++..|+.+++|++.... .
T Consensus 307 s~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~---------~ 368 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKL---------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK---------S 368 (456)
T ss_pred CCCccEEEEECCCCcee---------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc---------c
Confidence 99999999998754311 01111111122 68899999876 67788889999999876532 1
Q ss_pred eeeccCCCCCe---eEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDV---NSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v---~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|...+ .+...++.++ ++.+|+.|+.|++|++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred eeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence 22334454433 3333455554 678999999999999874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=219.24 Aligned_cols=254 Identities=26% Similarity=0.464 Sum_probs=196.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc-C--CCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-A--SGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~-~--~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+-|..+... ++.++||++||.+++||..+. +.+.+.||.++|.+++|. + ....++++|.|.++++|.+..
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 55666666665 789999999999999987664 567889999999988883 2 344799999999999999876
Q ss_pred CCee-EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC--------ce--------eeeeeeeccCC
Q 023500 79 GNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN--------WH--------CVQTISESNNG 141 (281)
Q Consensus 79 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~--------~~--------~~~~~~~~~~~ 141 (281)
+... .++....||...|.+|...+++..+++||+|.++++|+.+...... .+ ..+.......|
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 6432 2334445999999999999999999999999999999843221100 00 00111122358
Q ss_pred ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcE
Q 023500 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSV 220 (281)
Q Consensus 142 h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~ 220 (281)
|+++|.++.|++ ...+++++.|.+|+.||+.+++... .+ ....++.+++.++. .++++|++|.-+
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~-----------~~--~~~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS-----------TL--TTNKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeeccccee-----------ee--ecCcceeEeecccccceeeecCCCCce
Confidence 999999999988 6789999999999999997654321 11 23567788888875 478899999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+++..+ .........+|...|.++.|+|.+.++|++++.|+++++||++.+
T Consensus 325 rl~DPR~~~------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 325 RLWDPRTGD------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eecCCCCCC------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 999886532 233445667999999999999999999999999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=212.03 Aligned_cols=253 Identities=23% Similarity=0.404 Sum_probs=198.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+++|.+++.+|+.+++|||+.|..-.||+..+++ ....+.+|++.|.++.|+.+|.+||||+.+|.|+||....+..
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 89999999999999999999999999999998886 4678899999999999999999999999999999999987654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
. ..+..-...+..++|||....+++|+.||.+.+|.+.+.. ..+...||..++++=.|.|+|+.++++
T Consensus 141 ~---~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------~~kv~~Gh~~~ct~G~f~pdGKr~~tg 208 (399)
T KOG0296|consen 141 Q---WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------LCKVMSGHNSPCTCGEFIPDGKRILTG 208 (399)
T ss_pred E---EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------eeeEecCCCCCcccccccCCCceEEEE
Confidence 2 2333446679999999999999999999999999876531 223345899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCC----C-ccc---------------------------ceeE-------------------
Q 023500 162 SDDLTIKIWGADITRMQSGDG----Y-ASW---------------------------RHLC------------------- 190 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~----~-~~~---------------------------~~~~------------------- 190 (281)
..||+|++|+.+..++..... . ..+ +.+.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 999999999987554321111 0 000 0000
Q ss_pred --------------------------------EeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 191 --------------------------------TISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 191 --------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+...-|...|..+.|.+..++++++.|+.++.|+.+.+ +
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG---------~ 359 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG---------Q 359 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc---------c
Confidence 00001334555666666667777777777777755432 3
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.....+|...|.+++++|+.+ +++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 4456679999999999999764 68899999999999975
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=204.88 Aligned_cols=245 Identities=22% Similarity=0.354 Sum_probs=197.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|...|.++.|++|.++++++|.||.+.|||..+... ++.+.-...-|..++|+|.|++++.||.|+...++++...+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 788999999999999999999999999999876653 33444456778899999999999999999999999997442
Q ss_pred --eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCE
Q 023500 81 --EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDK 157 (281)
Q Consensus 81 --~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 157 (281)
.....+.+.+|...+.|+.|-+ ...|+++|.|.++-+||++... .+.. ..+|.+.|.+++++| +++.
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~-----~~~~----f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ-----QTQV----FHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce-----EEEE----ecCCcccEEEEecCCCCCCe
Confidence 1234567889999999999988 6789999999999999998763 2222 248999999999999 8899
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+++|+-|.+.++||++.... ..++ ..|+..|.++.|.|+|+ +++|+.|++.|+|+++.+-.
T Consensus 202 FvSg~cD~~aklWD~R~~~c-----------~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~------ 263 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQC-----------VQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE------ 263 (343)
T ss_pred EEecccccceeeeeccCcce-----------eEee-cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE------
Confidence 99999999999999874321 1223 34889999999999986 88999999999998865311
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+.....-..+|++++|+..|+ +|.+|..|.++.+||.-
T Consensus 264 -~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 264 -LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL 303 (343)
T ss_pred -EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc
Confidence 11222223345799999999775 67788889999999963
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=206.78 Aligned_cols=253 Identities=20% Similarity=0.349 Sum_probs=192.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++++.+.|+.+|.+|.+++.|....+|-..+++ .+.++.||.+.|+|++.+-+.++++||++|.++++||+..++.
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 88999999999999999999999999999775553 5789999999999999999999999999999999999987654
Q ss_pred eEE--------------------------------------------------eEeecCCccceeEEEecCCCCeEEEEe
Q 023500 82 FEC--------------------------------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 82 ~~~--------------------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
... ...+..+.+.++.+-|.|.++.|++|.
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 311 122345677889999999999999999
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEE
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 191 (281)
+||.|..||+.... .+-+....|...|+.++++++.+++++++.|.+-++||.... ..+.+
T Consensus 167 e~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-----------~v~Kt 227 (327)
T KOG0643|consen 167 EDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-----------EVLKT 227 (327)
T ss_pred CCCcEEEEEcccCc--------eeeechhhhccccccccccCCcceEEecccCccceeeeccce-----------eeEEE
Confidence 99999999887642 122333468889999999999999999999999999998632 22223
Q ss_pred eecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcc----ceeeeeeccCCCCCeeEEEEcCCCCeeEEE
Q 023500 192 ISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPS----YKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 192 ~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 265 (281)
+. .+.|+.+.+.+| +..++.|+.+-.-.---....+-++... +.+.+.+.++|-++|++++|+|+|+ .++|
T Consensus 228 y~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsS 304 (327)
T KOG0643|consen 228 YT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSS 304 (327)
T ss_pred ee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-cccc
Confidence 32 467788877777 4455555544221111111111111111 1233456689999999999999987 5899
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
|++||.|||.-+.
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999986543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=201.86 Aligned_cols=235 Identities=20% Similarity=0.371 Sum_probs=185.5
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
-+||++|+|.+|++|+..++ .|..++...++.|+.+.+.|+++.|++++. ..||++|+.+.++. ++.++.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCce
Confidence 38999999999999998887 578888877789999999999999998876 68999999877653 678899999999
Q ss_pred eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
++|.|.-++...++||+||++||||+.... +.+.+ .|.++|+++..+|+...|++|..+|.|++||+...
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~-----~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQRNY-----QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcc-----cchhc-----cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999886531 22222 46799999999999999999999999999998632
Q ss_pred ccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
.... ....-.+.++.++...++| +++++...|...+|..... ...+. ..-+...+.|+.-++.+.
T Consensus 157 ~c~~-----------~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~--l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 157 SCTH-----------ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASE--LEPVHKFQAHNGHILRCL 222 (311)
T ss_pred cccc-----------ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC-Ccccc--ceEhhheecccceEEEEE
Confidence 2111 0011134667888888887 5666667789999976541 11111 111234578999999999
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 255 WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+||+++ +|+++|.|.+++||....
T Consensus 223 lSPd~k-~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 223 LSPDVK-YLATCSSDKTVKIWNTDD 246 (311)
T ss_pred ECCCCc-EEEeecCCceEEEEecCC
Confidence 999986 588999999999999764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=227.12 Aligned_cols=252 Identities=28% Similarity=0.525 Sum_probs=195.6
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|+++.|.| .+.+|++|+.|+.|+||+... +..++.++.+|..+|.+++|+++|..++|+|.|+.+++||+..++
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 889999999999 899999999999999999876 346899999999999999999999999999999999999998775
Q ss_pred eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. +..+.. ...+.|++|+|++ +.+++|+.|+.|+.||+.... .++. ...|-+.|..+.|-+++..++
T Consensus 292 ~---~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-----vvqe----Yd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 292 V---LSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-----VVQE----YDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred E---EEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----HHHH----HHhhhhheeeeEEccCCceEe
Confidence 3 332321 3457899999998 689999999999999887653 1222 235778899999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCC--------------ccc-------ceeEEeec-------------cc--CcceEEE
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGY--------------ASW-------RHLCTISG-------------YH--DRTIFSV 203 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~--------------~~~-------~~~~~~~~-------------~~--~~~v~~~ 203 (281)
+.+.|+.+++|+....-+....-. ..| ..+..++. .| .+--+.+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 999999999998653211100000 000 00000000 01 1122457
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.|+|+| ++++|.+||.+.+|+.+.- .++...++|+.++..+.|+|..+..+|||+.||.|++|+
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 888886 6889999999999977642 234556789999999999999888899999999999996
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=218.89 Aligned_cols=260 Identities=24% Similarity=0.431 Sum_probs=205.2
Q ss_pred CCccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCce--------eeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCc
Q 023500 1 MHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDY--------ECVATLEGHENEVKSVSWNAS-GTLLATCGRDKS 70 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~--------~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~ 70 (281)
+|.+.|+.+.+-|+. .++|+++..+.+.|||..+..- .+-..+.||.+.-++++|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999999965 5788889999999999654321 223377899998899999994 567999999999
Q ss_pred EEEEEecCCCe----eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 71 VWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 71 v~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
|.+||+..... ..+...+.+|.+.|..++|+|... ++++++.|+.+.|||.....+ .......+|.+.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-------~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-------KPSHSVKAHSAE 274 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-------CCcccccccCCc
Confidence 99999976543 345677889999999999999754 789999999999999875211 122233589999
Q ss_pred EEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEE
Q 023500 146 IWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQF 222 (281)
Q Consensus 146 v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~ 222 (281)
|+|++|+|- +..||||+.|++|++||++.-+ ..+..+. .|...|+++.|+|. .++++++.|+++.+
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----------~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLN----------KPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNV 343 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcc----------cCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence 999999995 4589999999999999985321 1233333 48899999999984 68999999999999
Q ss_pred EecccCCCcCC-----ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 223 FVESKDDLIDG-----PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 223 ~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|+..+.+.... .....++....+|...|....|+|..+++++|.++|+.+.||++.
T Consensus 344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99876443221 111233445679999999999999999999999999999999987
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=231.08 Aligned_cols=247 Identities=34% Similarity=0.575 Sum_probs=192.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.++|+|+|+++++|+.|++|+|||.... ..+++++.+|...|++++|+|+|+++++|+.|++|++||+..+
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-- 278 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-- 278 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--
Confidence 7889999999999999999999999999998332 2468899999999999999999999999999999999999763
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++...+.+|...|++++|+++++++++++.|+.|++||+...... +...+.. ..... .++++.|+|++.+++++
T Consensus 279 -~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~-~~~~~-~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 279 -ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSG-AENSA-PVTSVQFSPNGKYLLSA 352 (456)
T ss_pred -eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccC-CCCCC-ceeEEEECCCCcEEEEe
Confidence 578899999999999999999999999999999999998765311 1222221 11122 68999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
..|+++++||+........ ..+... ..+++....+. ..+++|+.|+.+.+|+.... .
T Consensus 353 ~~d~~~~~w~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---------~ 412 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGT-----------YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---------G 412 (456)
T ss_pred cCCCeEEEEEccCCcceee-----------ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---------c
Confidence 9999999999864332111 111111 12223333333 46889999999999977542 2
Q ss_pred eeeeccCC-CCCeeEEEEcCCCCeeEEEeC--CCCeEEEEEcc
Q 023500 239 LLKKEKAH-DMDVNSVQWSPGERRLLASAS--DDGMIKIWELA 278 (281)
Q Consensus 239 ~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~--~Dg~v~iw~~~ 278 (281)
......+| ...+..+.++|.. +++++++ .|+.+++|...
T Consensus 413 ~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 413 ILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 23345567 7888999999975 5788887 69999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=199.60 Aligned_cols=240 Identities=23% Similarity=0.431 Sum_probs=194.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.+.|+-||+|.++++.|.+++||++..+ .+++++.+|..+|..++.+.|...+++||.|+.+.+||+..++
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk- 92 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK- 92 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-
Confidence 5788999999999999999999999999998777 4689999999999999999999999999999999999998775
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+.+.+|...|+.++|+.+...+++||.|.++++||..+... .+++.+.. ....|.++... +..+++|
T Consensus 93 --v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQilde----a~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 93 --VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDE----AKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred --eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC---Cccchhhh----hcCceeEEEec--ccEEEee
Confidence 4678999999999999999999999999999999999876543 23333332 34668777765 3479999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.||++|.||++.+.. ++.+...||.++++++++ ..++++-|.++++.+...+. ++
T Consensus 162 S~DGtvRtydiR~G~l--------------~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------lL 218 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTL--------------SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------LL 218 (307)
T ss_pred ccCCcEEEEEeeccee--------------ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH---------HH
Confidence 9999999999876542 244678899999999976 67888899999999665432 33
Q ss_pred eeccCCCCCe--eEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDV--NSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v--~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...++|...= ..+.++... ..+++|++||.|.+||+..
T Consensus 219 ~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred HHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEecc
Confidence 4455665432 334454433 3578999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=205.10 Aligned_cols=248 Identities=23% Similarity=0.408 Sum_probs=192.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|+++.|+|+|..||||+.|..|.||+..+.. +....+++|.++|..+.|.+|++.|+++|.|++++.||.+.++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~- 123 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK- 123 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce-
Confidence 77899999999999999999999999999876533 4566788999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+++..++|...|+++.-..-+ .++.|++.|+++++||+...+ ++++++ -+.+++++.|..+++.+.+
T Consensus 124 --~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----~~~t~~-----~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 124 --RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----AIKTFE-----NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred --eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----hhhccc-----cceeEEEEEecccccceee
Confidence 577888999999888733223 368899999999999887543 344442 2467899999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+-|+.|++||+... ....... .|..+|+.++.+++| .+++-+-|..+++|++++--.. .+. ..
T Consensus 192 ggIdn~ikvWd~r~~-----------d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~--v~ 256 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKN-----------DGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRC--VK 256 (338)
T ss_pred ccccCceeeeccccC-----------cceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCC-Cce--EE
Confidence 999999999988521 1122333 478899999999876 5777788999999988653211 111 11
Q ss_pred eeeccCCCC--CeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDM--DVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~--~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.....|.. ....++|+|++. .+..|+.|..+.+||...
T Consensus 257 if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred EeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence 222233333 356789999876 477899999999999765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=224.22 Aligned_cols=241 Identities=25% Similarity=0.453 Sum_probs=207.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|.++.|+|.-..++++-..|.+.||+..+.. .++.++-.+.+|.+..|-+..+++++|++|..|++++....
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-- 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-- 87 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--
Confidence 56889999999999999999999999999987653 57788777899999999999999999999999999998654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 160 (281)
+.+..+.+|.+-|++++.||+..+++|+|.|-+||+|+-+.. |.|.++++ ||..-|.+++|+| |...+++
T Consensus 88 -ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----wa~~qtfe----GH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 88 -EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----WACEQTFE----GHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred -eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc----eeeeeEEc----CcceEEEEEEecCCCccceee
Confidence 457889999999999999999999999999999999987653 66766664 8999999999999 4568999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc---eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++-|++|++|.+... .+.+++. .|+..|.++.+-+.| ++++|+.|.++++|+... +
T Consensus 159 ~sLDrTVKVWslgs~-----------~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------k 217 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSP-----------HPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------K 217 (794)
T ss_pred eeccccEEEEEcCCC-----------CCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecch---------H
Confidence 999999999976421 2234444 488999999998877 999999999999997643 3
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.++....+|...|..+.|+|.- .+++|||+||+||||.-
T Consensus 218 ~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 218 SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNS 256 (794)
T ss_pred HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecC
Confidence 4566678999999999999964 58999999999999974
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=233.66 Aligned_cols=255 Identities=22% Similarity=0.443 Sum_probs=205.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..++|+|....++++-..|.|++||..-+. ++..|.+|+++|..+.|+|.+.+++|||+|..|+||+... ..
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---rr 84 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---RR 84 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc---ce
Confidence 457789999999999999999999999976653 5778899999999999999999999999999999999853 35
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
|+.++.+|-+.|+.+.||+.-..|+|+|.|-+|+||+..+. +|+..+ .||.-.|.|..|+|..+.+++++-
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-----~~iavl----tGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-----KCIAVL----TGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-----ceEEEE----ecCceEEEeeccCCccceEEEecc
Confidence 88999999999999999999999999999999999966543 355444 489999999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCC--cc----------c-----ceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEec
Q 023500 164 DLTIKIWGADITRMQSGDGY--AS----------W-----RHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVE 225 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~--~~----------~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~ 225 (281)
|.+||+||+...+-....+. .. + -........|++.|.-++|+|. .++++|+.|+.+++|..
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 99999999753211110000 00 0 0011122357888888889885 57899999999999966
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.. +... .....+|...|.++-|+|.. .+++|.|+|+.+||||+...
T Consensus 236 net-----KaWE--vDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 236 NET-----KAWE--VDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ccc-----ccee--ehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccc
Confidence 432 2211 23457899999999999964 58899999999999998753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=211.83 Aligned_cols=241 Identities=31% Similarity=0.502 Sum_probs=203.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|.+++|+..|+++|+++.|-.+++||..+. +.+.+.+.+|...|.++.|-|.|.+|+|++.|++|+.|++..+
T Consensus 149 Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-- 225 (406)
T KOG0295|consen 149 HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-- 225 (406)
T ss_pred cccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--
Confidence 7888999999999999999999999999987653 5678888999999999999999999999999999999999655
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-------
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK------- 154 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------- 154 (281)
.++.++.+|..-|+.++.+.++.++++++.|.++++|-++... |... ...|.-+|-+++|.|.
T Consensus 226 -~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~----lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 226 -YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAE----LREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred -eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhh----hhccccceEEEEecccccCcchh
Confidence 5789999999999999999999999999999999999665431 2222 2367788888988662
Q ss_pred ---C-----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 155 ---G-----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 155 ---~-----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
+ .++.++++|++|++||+.++. -+.++. .|+..|..++++|.| +++++..|+++++|+.
T Consensus 296 ~at~~~~~~~~l~s~SrDktIk~wdv~tg~-----------cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSRDKTIKIWDVSTGM-----------CLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred hccCCCCCccEEEeecccceEEEEeccCCe-----------EEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 2 489999999999999987543 233333 489999999999987 6889999999999987
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+. .+++.....|+.-|+++.|+.+.+ +++||+-|..+++|.-
T Consensus 364 ~~---------~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 364 KN---------LQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cc---------ceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 64 245566668999999999998765 6889999999999973
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=229.28 Aligned_cols=244 Identities=26% Similarity=0.415 Sum_probs=198.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++.|.+++...+|.+||||+.|+++++|..+.+ +..+++...+|...|.+++++.. ..+|+++|.|+++++|++..
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 7888999997778899999999999999977433 34467778899999999999774 46899999999999999976
Q ss_pred CCeeE--E----eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 79 GNEFE--C----VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 79 ~~~~~--~----~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
..+.. . ..+...|...|+||+.+|+..+++|||.|.+.++|++++.. +.....||+..|+++.|+
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---------l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---------LLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---------EEEEeeCCccceEEEEec
Confidence 32211 1 12345799999999999999999999999999999887432 222335999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCc
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
|..+.++||+.|.+|+||.+.... -..++. .|+..|...+|-.+ ..+++++.||.+++|.++..
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fS-----------ClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~--- 579 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFS-----------CLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN--- 579 (775)
T ss_pred cccceeEeccCCceEEEEEeccce-----------eeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---
Confidence 999999999999999999876432 223343 37778888777654 57999999999999988653
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+.....+|...|++++-+|... .++||+.||.|.+|.
T Consensus 580 ------eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 580 ------ECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWK 617 (775)
T ss_pred ------hhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEee
Confidence 34455678999999999999875 788999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=221.38 Aligned_cols=252 Identities=22% Similarity=0.413 Sum_probs=197.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|-..+++++++|||+++|||+.||.|+|||...+ .|..++..|+..|+.+.|+..|+.++++|.||+|+.||+...+.
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 6788999999999999999999999999997655 58899999999999999999999999999999999999977654
Q ss_pred eEEeEeecCCc-cceeEEEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 82 FECVSVLQGHA-QDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 82 ~~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
+ +++.... ....|++..|.+.++.+|+.|. .|++|.+.++. +.....||.++|.+++|+|++..|+
T Consensus 427 f---RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 427 F---RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred e---eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------eeehhcCCCCcceeeEEccccCeEE
Confidence 3 4444432 3457899999999999999996 89999887653 3344579999999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc---CC--
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI---DG-- 233 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~---~~-- 233 (281)
+++.|.+||+||+-... .....+. ....+..+++.|+| .++....||.+.+|+.+..... ++
T Consensus 495 S~SWDkTVRiW~if~s~----------~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSS----------GTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred eccccceEEEEEeeccC----------ceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 99999999999863211 1122222 34567888999987 5788889999999987643221 11
Q ss_pred -----cc-ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 234 -----PS-YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 234 -----~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.. ...............+.+.++++|.. +++||....|+||++...
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~-IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKC-ILAGGESNSICIYDVPEG 614 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCE-EEecCCcccEEEEECchh
Confidence 00 01112222334567899999999874 668999999999998753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=229.83 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=182.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC--------------------------------C--------------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG--------------------------------G-------------- 35 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--------------------------------~-------------- 35 (281)
|++.|+++.|++||+|||+||.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 889999999999999999999999999998654 0
Q ss_pred ------------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-
Q 023500 36 ------------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP- 102 (281)
Q Consensus 36 ------------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p- 102 (281)
...++..+.||.+.|.+++|+.+ .+|+|+|.|++||||.+... +|+.++ .|.+-|+||+|+|
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEeccc
Confidence 01124466799999999999865 68999999999999998533 467665 5999999999999
Q ss_pred CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCC
Q 023500 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 182 (281)
Q Consensus 103 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 182 (281)
|.+++++||-|++|+||.+.+..-..| .. - ...|++++|.|+|+..+.|+-+|.+++|++...+......
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W------~D---l-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDW------ND---L-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEee------hh---h-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 566999999999999998876432222 11 1 3779999999999999999999999999886544332211
Q ss_pred CcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC
Q 023500 183 YASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260 (281)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 260 (281)
+...+ . .......|+.+++.|.. .++..+.|..+|+|+....++. . .++....-.. =....|+.+|+
T Consensus 491 I~~~~---~-Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv-----~-KfKG~~n~~S-Q~~Asfs~Dgk 559 (712)
T KOG0283|consen 491 IRLHN---K-KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV-----H-KFKGFRNTSS-QISASFSSDGK 559 (712)
T ss_pred Eeecc---C-ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh-----h-hhcccccCCc-ceeeeEccCCC
Confidence 10000 0 01123378888887643 4888889999999966432221 1 1111111112 23578999887
Q ss_pred eeEEEeCCCCeEEEEEcc
Q 023500 261 RLLASASDDGMIKIWELA 278 (281)
Q Consensus 261 ~~~~s~~~Dg~v~iw~~~ 278 (281)
+ |+++++|..|+||+..
T Consensus 560 ~-IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 560 H-IVSASEDSWVYIWKND 576 (712)
T ss_pred E-EEEeecCceEEEEeCC
Confidence 5 6689999999999973
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-30 Score=232.23 Aligned_cols=248 Identities=20% Similarity=0.288 Sum_probs=190.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC----ce--eeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG----DY--ECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~----~~--~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w 74 (281)
|...|.+++|+|+|++||+|+.|+.|+||+.... .. .+...+. +...|.+++|+| ++.+|++++.|++|++|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 6788999999999999999999999999986421 00 1122333 356789999987 57899999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc-
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN- 152 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~- 152 (281)
|+...+ .+..+.+|...|.+++|+| ++.+|++|+.|++|++|++.... ++..+. +...+.++.|+
T Consensus 561 d~~~~~---~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-----~~~~~~-----~~~~v~~v~~~~ 627 (793)
T PLN00181 561 DVARSQ---LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-----SIGTIK-----TKANICCVQFPS 627 (793)
T ss_pred ECCCCe---EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-----EEEEEe-----cCCCeEEEEEeC
Confidence 986543 4567789999999999997 67899999999999999986542 233332 23568899995
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
+++.+|++|+.|+.|++||+..... ....+. .|...|.++.|.+...+++++.|+.+++|+.......
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~----------~~~~~~-~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~- 695 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKL----------PLCTMI-GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG- 695 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCc----------cceEec-CCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccc-
Confidence 5688999999999999999863211 111222 4778899999987788999999999999987532100
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+....+|...++.++|+|++. +|++|+.|+.|++|+..
T Consensus 696 --~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 696 --INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred --cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence 00112334567889999999999875 78999999999999964
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=209.59 Aligned_cols=233 Identities=24% Similarity=0.481 Sum_probs=184.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+.|.|+.+ |.+.+++|..|++|+|||.+.. .++..+.||++.|.|+.| +.+.|++||.|-+|++||+++++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc--
Confidence 467888887 4567889999999999997654 578899999999999988 45699999999999999998775
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
++.++-.|.++|-.+.|+. .+++++|.|.++.+|++..+.. .++..-..||.+.|+.++|+ .+++++++
T Consensus 269 -~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~------it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 269 -PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred -hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH------HHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 5778889999999998865 5899999999999999876531 11222335899999999996 45999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.|.+|++|++....+. .....|.+.|-|+++ .+.++++|++|.++++|+...+ .++..
T Consensus 338 gDRTikvW~~st~efv------------Rtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G---------~cLRv 395 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFV------------RTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECG---------ACLRV 395 (499)
T ss_pred CCceEEEEeccceeee------------hhhhcccccceehhc-cCeEEEecCCCceEEEEecccc---------HHHHH
Confidence 9999999998643321 111235666666554 3557899999999999977543 23445
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+|+.-|+++.|.. ++ +++|+.||+|+|||+..
T Consensus 396 LeGHEeLvRciRFd~--kr-IVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDN--KR-IVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HhchHHhhhheeecC--ce-eeeccccceEEEEeccc
Confidence 678999999999984 34 67999999999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-30 Score=213.90 Aligned_cols=242 Identities=22% Similarity=0.428 Sum_probs=196.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
+..|..++|+..|..+|.|+.- |.+-+|+.....+ +...++|-..+.+++++|||++|+||+.|+.|++||.+.+
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-- 382 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-- 382 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--
Confidence 3678899999999999988755 7999999877655 4455799999999999999999999999999999998755
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
-|..++..|.+.|+.++|+..++.+++.|-||+|+.||+.+- ++.+++.. ..+.+..|++..|.|+.+..|
T Consensus 383 -fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-----rNfRTft~---P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 383 -FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-----RNFRTFTS---PEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred -eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-----ceeeeecC---CCceeeeEEEEcCCCCEEEee
Confidence 588899999999999999999999999999999999987643 34555542 224556789999999999999
Q ss_pred eCCC-cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDL-TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|. .|.+|+.+.++. +-.+ ..|+.||.++++++.+ .+++++.|+++++|++-.. ..
T Consensus 454 ~~d~F~IfvWS~qTGql-----------lDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-----~~---- 512 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQL-----------LDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-----SG---- 512 (893)
T ss_pred ccceEEEEEEEeecCee-----------eehh-cCCCCcceeeEEccccCeEEeccccceEEEEEeecc-----Cc----
Confidence 9887 788999876542 2222 3599999999999876 6889999999999966321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.-.+...+++++|.|+|+. +|.+..||.|.+||...
T Consensus 513 ~vEtl~i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeeEeeccceeEEEEcCCCCe-EEEEEecceEEEEEhhh
Confidence 1112245678999999999976 78899999999999754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=207.15 Aligned_cols=243 Identities=26% Similarity=0.427 Sum_probs=195.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|.|+.|. .+.+++|+.|.++++||.++++ +++++-+|.+.|.-+.|+. .+++|+|.|+++.+||+.....
T Consensus 236 HtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 236 HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred CCCcEEeeecc--ceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH
Confidence 88999999985 5699999999999999999884 6888899999999999975 6899999999999999977665
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+.+++.+|.+.|+.+.|.. .+++++|.|.+|++|++.+. .+++++ .+|+..+-|+.+ .++++++|
T Consensus 310 it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~-----efvRtl----~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC-----EFVRTL----NGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred HHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce-----eeehhh----hcccccceehhc--cCeEEEec
Confidence 556678899999999999865 49999999999999977654 355555 489999988887 46799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|.+|++||+..+.... . ...|+..|.++.|+. ..+++|+.||.+++|+.........+....++.
T Consensus 377 SSDntIRlwdi~~G~cLR--------v----LeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~ 443 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGACLR--------V----LEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR 443 (499)
T ss_pred CCCceEEEEeccccHHHH--------H----HhchHHhhhheeecC-ceeeeccccceEEEEecccccCCcccccchHHH
Confidence 999999999987654321 1 124778888998864 467899999999999886543322233333445
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....|++.|-.+.|.. +.+++++-|.+|.|||+-+
T Consensus 444 ~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 444 TLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCC
Confidence 5667999999999974 3477999999999999865
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=197.99 Aligned_cols=258 Identities=23% Similarity=0.375 Sum_probs=195.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC------------C----ceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG------------G----DYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~------------~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|+.++++.+|+|||.++|||+.|.+|+|.|... + .-..+.++-.|.++|+++.|+|....|++|
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 788999999999999999999999999999651 0 112356777899999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
+.|++|++||+.........+++ .-...|+++.|||.|.+++.|..-.++++||++.. +|..... +..+|++.
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-----Qcfvsan-Pd~qht~a 263 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-----QCFVSAN-PDDQHTGA 263 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccce-----eEeeecC-cccccccc
Confidence 99999999998644322222223 23567999999999999999999999999988753 3444333 44679999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
|+++.+++.+.+.++++.||.|++||--..++. .++... ....|++..|..++ ++++.+.|..+++|
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv-----------~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCV-----------RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHH-----------HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 999999999999999999999999985432221 111112 34678888888776 67888899999999
Q ss_pred ecccCCCcC---------------------C-------------------ccceeeeeeccCCCCCeeEEEEcCCCCeeE
Q 023500 224 VESKDDLID---------------------G-------------------PSYKMLLKKEKAHDMDVNSVQWSPGERRLL 263 (281)
Q Consensus 224 ~~~~~~~~~---------------------~-------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 263 (281)
.+..+.... . ....+...-..+|.+.++.+..+|.++ .|
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~F 411 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AF 411 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ce
Confidence 654321110 0 000000111346999999999999887 47
Q ss_pred EEeCCCCeEEEEEcc
Q 023500 264 ASASDDGMIKIWELA 278 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~ 278 (281)
++|+.|-..|+|-.+
T Consensus 412 mTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 412 MTCSDDFRARFWYRR 426 (430)
T ss_pred eeecccceeeeeeec
Confidence 799999999999754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=218.86 Aligned_cols=253 Identities=24% Similarity=0.401 Sum_probs=198.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.++|+.++|+|++.+|++||.|-.|++|+..+. .|+.++.||-+.|..+.|++.-.+|+|+|+|.+|++|+.++.+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~- 126 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK- 126 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-
Confidence 8899999999999999999999999999987665 5789999999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceee---------e---ee--------eeccCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV---------Q---TI--------SESNNG 141 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~---------~---~~--------~~~~~~ 141 (281)
++.+++||...|.|.+|||+..+++|+|-|-+|++||+...+....... + .+ .....|
T Consensus 127 --~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 127 --CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred --eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 7889999999999999999999999999999999999864321111000 0 00 012358
Q ss_pred ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcE
Q 023500 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSV 220 (281)
Q Consensus 142 h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~ 220 (281)
|...|+-++|+|.-..+++|+.|..|++|-+.-. +.|..- ..-.|...|.++-|+| ..++++.+.|+++
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet--------KaWEvD--tcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--------KAWEVD--TCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccc--------cceeeh--hhhcccCCcceEEecCccceeEecCCCccE
Confidence 9999999999999999999999999999965321 112211 1124778899999998 4688999999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+..+.. . ...+. .. ..+-+.++-+|.. +++ .++-|+-+.+|.+..+
T Consensus 275 rVwDm~kRt-----~-v~tfr--re-ndRFW~laahP~l-NLf-AAgHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 275 RVWDMTKRT-----S-VQTFR--RE-NDRFWILAAHPEL-NLF-AAGHDSGMIVFKLERE 323 (1202)
T ss_pred EEEeccccc-----c-eeeee--cc-CCeEEEEEecCCc-cee-eeecCCceEEEEEccc
Confidence 999776421 1 11111 22 2457888899965 566 4666777778887654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-29 Score=198.28 Aligned_cols=242 Identities=37% Similarity=0.622 Sum_probs=194.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++++.|+.+.+|+..++. ....+.+|...+..+.|+|++++|++++.|+.|++|++....
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~- 84 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE- 84 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-
Confidence 78999999999999999999999999999987654 355667899999999999999999999999999999997543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+..|...+.++.|+|++.++++++.|+.+++|++.... ....+ ..|...+.++.|+|++.+++++
T Consensus 85 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 85 --CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-----CLTTL----RGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred --ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-----EEEEe----ccCCCcEEEEEEcCcCCEEEEE
Confidence 345566788889999999998888888889999999886431 22222 2577889999999998889888
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||....+. ...+. .+...+.++.+++++ .+++++.++.+++|+.... ...
T Consensus 154 ~~~~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~ 212 (289)
T cd00200 154 SQDGTIKLWDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCL 212 (289)
T ss_pred cCCCcEEEEEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------cee
Confidence 8899999999863221 11122 356688999999987 7778888999999977542 122
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....|...+.++.|+|++ .++++++.||.|++|++..
T Consensus 213 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred cchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC
Confidence 2333677899999999984 5677888899999999863
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-29 Score=189.02 Aligned_cols=267 Identities=22% Similarity=0.434 Sum_probs=197.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec--CCCceeeeeeecCCCCCeeEEEEc-C-CCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED--VGGDYECVATLEGHENEVKSVSWN-A-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~-~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
|++-|.++.|++.|+++|||+.|+.++|||. .++.+.+....+.|.+.|..|.|. | -|+.+|++|.|+++.+|.-+
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence 7888999999999999999999999999994 456778888899999999999994 4 59999999999999999863
Q ss_pred C------CCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCC-CCCceeeeeee---eccCCcccc
Q 023500 78 P------GNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTD-SDNWHCVQTIS---ESNNGHSST 145 (281)
Q Consensus 78 ~------~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~-~~~~~~~~~~~---~~~~~h~~~ 145 (281)
. +..+....++......|+.|+|.|. |..+++++.||.+|||+..+.. ...|.....++ .+...+..+
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 2 1233445667777888999999996 5579999999999999876542 23343322222 222345677
Q ss_pred EEEEEEccCC---CEEEEeeCC-----CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-----ceee
Q 023500 146 IWALSFNAKG---DKLVSCSDD-----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIA 212 (281)
Q Consensus 146 v~~~~~~~~~---~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 212 (281)
..|+.|+|.. .+|+.|+.+ +.+.||.... +..+|..+..+. .+..+|..++|.|+ .+++
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e-------~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE-------NGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecC-------CcceeeeehhcC-CCCCcceeeeeccccCCceeeEE
Confidence 8899999853 578887766 3677884321 111233333333 47899999999985 3688
Q ss_pred ecCCCCcEEEEecccC-------CC----cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 213 SGAADDSVQFFVESKD-------DL----IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.++.|| +++|.++.. .. .........+.....|..+|+.+.|+-.|. +|++.|+||.||+|+..
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhh
Confidence 888899 999987631 01 111222233456778999999999999875 78899999999999854
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=202.28 Aligned_cols=250 Identities=22% Similarity=0.402 Sum_probs=178.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-------------------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL------------------- 62 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l------------------- 62 (281)
|..+++.+.|+|.|.|+|+|...|+++|||....+.....++..-.++|..++|++++++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 7788999999999999999999999999997554333333444444555555555555554
Q ss_pred --------------------------EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 63 --------------------------ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 63 --------------------------~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
+|||+|++|-+|. +.+++.......|..-|+|++|+|++..+++++.|+++
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 4444444444443 22333345567899999999999999999999999999
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
.+||-.+.+ .+..+.. ..+|.+.|.++.|+||++.++|++.|.++|+||+....... ....-....
T Consensus 215 ~iyDGktge-----~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~--------t~~~~~~v~ 280 (603)
T KOG0318|consen 215 YIYDGKTGE-----KVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS--------TWPMGSTVE 280 (603)
T ss_pred EEEcCCCcc-----EEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE--------EeecCCchh
Confidence 999765443 3333432 46899999999999999999999999999999986543211 000000011
Q ss_pred CcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 197 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
++. ..+-|. +..+++.+.+|.+.++.....+ ......+|...|++++.+|+++ .|.+|+.||.|.-|+
T Consensus 281 dqq-vG~lWq-kd~lItVSl~G~in~ln~~d~~---------~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 281 DQQ-VGCLWQ-KDHLITVSLSGTINYLNPSDPS---------VLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWD 348 (603)
T ss_pred ceE-EEEEEe-CCeEEEEEcCcEEEEecccCCC---------hhheecccccceeEEEEcCCCC-EEEeeccCceEEEEe
Confidence 222 233444 6778888999999999654321 1233468999999999999986 467999999999999
Q ss_pred cccC
Q 023500 277 LANT 280 (281)
Q Consensus 277 ~~~~ 280 (281)
....
T Consensus 349 ~~~g 352 (603)
T KOG0318|consen 349 SGSG 352 (603)
T ss_pred cCCc
Confidence 8653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=193.13 Aligned_cols=242 Identities=26% Similarity=0.416 Sum_probs=185.0
Q ss_pred CccceeEEEEcC---CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSP---SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~---~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|+++|..++|+| +|-+|++++.|+.=-|-+-.++++ +.+++||.+.|+...++.+-.+.+++++|-+.++||...
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 889999999987 677899999999877766666765 789999999999999999999999999999999999877
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+.+. .. ..|...|..++|+.+.++|++|+.+.-++++++++.+- ......+|++.|..+.|-.....+
T Consensus 91 gdel---hs-f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------pp~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 91 GDEL---HS-FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------PPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhh---hh-hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--------CchhhcCCCCcceeEEEeccCceE
Confidence 7642 22 35788899999999999999999999999998876531 112235899999999998888889
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-----------------------------
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----------------------------- 209 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------- 209 (281)
++...|++||+||........... ...+|.++..+++|
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~ 225 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC 225 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence 998999999999987544221100 12233333333333
Q ss_pred ------------eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 210 ------------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 210 ------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+++|+.|..++.|+...+. .+-...++|-++|.|+.|+|+|. ++++||+||+||||++
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------Ei~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------EIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQT 296 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCc--------eeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEe
Confidence 45555555555555443221 11112478999999999999885 7899999999999997
Q ss_pred cc
Q 023500 278 AN 279 (281)
Q Consensus 278 ~~ 279 (281)
..
T Consensus 297 ~~ 298 (334)
T KOG0278|consen 297 TP 298 (334)
T ss_pred cC
Confidence 54
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=196.71 Aligned_cols=248 Identities=28% Similarity=0.449 Sum_probs=191.6
Q ss_pred CccceeEEEEcCCCC---EEEEeeCCCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGK---LLATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~---~l~tg~~d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|..+|..++|.-... .|++++.|.+++||..+.++. +.++...||...|-+|+..++|.++++||.|.++++|+.
T Consensus 143 ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~ 222 (423)
T KOG0313|consen 143 HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV 222 (423)
T ss_pred CCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc
Confidence 778888777665443 599999999999998765432 233444599999999999999999999999999999993
Q ss_pred cCCC----------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 77 MPGN----------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 77 ~~~~----------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
.... ...++..+.+|...|.+|.|++ ...++++|+|.+|+.||++.... +.+
T Consensus 223 ~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~ 296 (423)
T KOG0313|consen 223 ETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KST 296 (423)
T ss_pred CCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eee
Confidence 2211 1123456789999999999999 77899999999999999987642 222
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIA 212 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~ 212 (281)
+. -+...++++++|...+|++|+.|..+++||.+.+.-. ....++. .|...|.++.|+|. .+++
T Consensus 297 ~~-----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--------~v~~s~~-gH~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 297 LT-----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--------VVSQSLI-GHKNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ee-----cCcceeEeecccccceeeecCCCCceeecCCCCCCCc--------eeEEeee-cchhhhhheecCCCCceEEE
Confidence 21 2466889999999999999999999999998754210 1122333 47789999999985 5799
Q ss_pred ecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 213 SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++.|+.+++|+++.- +.-+....+|...|.++.|+.. .++++||.|.+|+|++-.+
T Consensus 363 S~S~D~t~klWDvRS~--------k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRST--------KAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEecCCeEEEEEeccC--------CCcceeeccCCceEEEEeccCC--ceEEeccCcceEEEecccc
Confidence 9999999999977642 1113344578999999999863 3688999999999997543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=208.28 Aligned_cols=249 Identities=20% Similarity=0.303 Sum_probs=173.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee-----------eeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE-----------CVATLEGHENEVKSVSWNA-SGTLLATCGRDKSV 71 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~-----------~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v 71 (281)
..|+....++++..+++++.+.....|+..++... ....+.+|.+.|.+++|+| ++++|++||.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34566667778777777777777777865433110 0123678999999999999 88999999999999
Q ss_pred EEEEecCCCe----eEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 72 WIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 72 ~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++||+..... ..++..+.+|...|.+++|+|++ ++|++++.|++|++||++... .+..+ .+|...|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-----~~~~l----~~h~~~V 171 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----AVEVI----KCHSDQI 171 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----EEEEE----cCCCCce
Confidence 9999965421 13456788999999999999985 689999999999999987542 22222 3688899
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc-ceEEEEeCCC-ceeeec----CCCCcE
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSRE-GIIASG----AADDSV 220 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~~~----~~d~~~ 220 (281)
.+++|+|++.+|++++.|++|++||.+..+. ...+.. |.. ....+.|.++ +.++++ +.|+.+
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----------v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----------VSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCCcE-----------EEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 9999999999999999999999999864321 112222 322 2334455554 444443 347899
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|+.+.... ... .....+...+....|++++..+++++..|+.|++||+.+.
T Consensus 240 klWDlr~~~~----p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 240 MLWDTRKMAS----PYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEeCCCCCC----cee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 9998753210 111 1111223345566788887654444446999999998753
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=207.45 Aligned_cols=239 Identities=26% Similarity=0.438 Sum_probs=190.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.|+++|++||.|..+|.+.|||....+ .+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence 5789999999999999999999999999986553 3556777 99999999998 67899999999999999986653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s 160 (281)
. ..++.+|...|+.++|++++.++++|+.|+.+.|||..... ...++ ..|.+.|.+++|+|- ...||+
T Consensus 293 ~--~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-----p~~~~----~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 293 V--VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-----PKFTF----TEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred h--hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-----ccEEE----eccceeeeEeeeCCCccCceEE
Confidence 2 22478999999999999999999999999999999873322 12222 369999999999994 458888
Q ss_pred ee--CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeee-cCCCCcEEEEecccCCCcCCcc
Q 023500 161 CS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIAS-GAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 161 ~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~-~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
|+ .|+.|++||+..+.... .......|+++.|++.. ++.+ |..++.+.+|....
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~-------------~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-------- 420 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARID-------------SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-------- 420 (484)
T ss_pred cCCCcccEEEEEEcCCCcEec-------------ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--------
Confidence 65 79999999987543221 11235678999999865 4444 33677899996643
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+....+|..+|..++++|++. .+++|+.|.++++|++..
T Consensus 421 -~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 -MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFD 462 (484)
T ss_pred -cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccC
Confidence 123445679999999999999986 478999999999999865
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=221.74 Aligned_cols=253 Identities=22% Similarity=0.300 Sum_probs=186.5
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...|.+++|+| ++.+||+++.|+.|+|||..+++ .+..+.+|.+.|++++|+| ++.+|++||.|++|++||+..+.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 35678899988 47899999999999999987654 4677889999999999997 78999999999999999997654
Q ss_pred eeEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
+...+..+ ..+.++.|+ +++.++++|+.|+.|++||+..... .... ..+|...|.++.|. ++.+|+
T Consensus 610 ---~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~----~~~h~~~V~~v~f~-~~~~lv 676 (793)
T PLN00181 610 ---SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCT----MIGHSKTVSYVRFV-DSSTLV 676 (793)
T ss_pred ---EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceE----ecCCCCCEEEEEEe-CCCEEE
Confidence 34444444 568999995 5688999999999999999865321 1111 23788999999997 677999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCc---c
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGP---S 235 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~---~ 235 (281)
+++.|++|++||+...... . ....+..+. .|...+.++.++++ .++++|+.|+.+.+|+.......... .
T Consensus 677 s~s~D~~ikiWd~~~~~~~--~---~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~ 750 (793)
T PLN00181 677 SSSTDNTLKLWDLSMSISG--I---NETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT 750 (793)
T ss_pred EEECCCEEEEEeCCCCccc--c---CCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence 9999999999997532100 0 011222332 36677888888875 47889999999999976432111000 0
Q ss_pred ceee-eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 236 YKML-LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 236 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.... ......|...|.+++|+|++. .+++|+.||.|+||++
T Consensus 751 ~~~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 751 IDPVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CCcccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 0000 001234566799999999876 5779999999999997
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=188.94 Aligned_cols=238 Identities=21% Similarity=0.345 Sum_probs=186.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC--EEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|+++|.+ |+++|+||.|.+|.|||..... .+..+-.|.+.|+++.|.+.-. .|++|++||.|.+|+.
T Consensus 42 H~~sitavAVs--~~~~aSGssDetI~IYDm~k~~--qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~--- 114 (362)
T KOG0294|consen 42 HAGSITALAVS--GPYVASGSSDETIHIYDMRKRK--QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV--- 114 (362)
T ss_pred cccceeEEEec--ceeEeccCCCCcEEEEeccchh--hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc---
Confidence 78899999994 9999999999999999986653 3567777999999999988654 8999999999999997
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
..+++...+++|...|+.++.||.+.+.++.+.|..+++|++-+.+.. .+..+ .+. ...+.|+|.|++++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a---~v~~L-----~~~--at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA---FVLNL-----KNK--ATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc---eeecc-----CCc--ceeeEEcCCCCEEE
Confidence 455788999999999999999999999999999999999987665422 11112 122 24499999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
.+.+++ |-+|.++....... . .....+.++.|...+.+++|+.|+.+.+|+.... ..
T Consensus 185 v~~~~~-i~i~q~d~A~v~~~------------i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---------~~ 241 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDNASVFRE------------I-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSD---------TP 241 (362)
T ss_pred EEeccE-EEEEecccHhHhhh------------h-hccccceeeeecCCceEEEecCCceEEEeccCCC---------cc
Confidence 888875 88997653322110 0 0124467788888999999999999999976531 22
Q ss_pred eeeccCCCCCeeEEE-EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQ-WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~-~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|+.+|.++. +......+|+|+|.||.|+|||+.-
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 345668999999988 3332346889999999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=186.24 Aligned_cols=241 Identities=26% Similarity=0.455 Sum_probs=183.5
Q ss_pred eEEEEcC--CCCEE-EEee-----CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEe
Q 023500 7 RSCAWSP--SGKLL-ATAS-----FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 7 ~~~~~~~--~~~~l-~tg~-----~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~ 76 (281)
..+.|+| .+++. |++. ..|.+.|-+.. .........+. -.+.+..++|+++ .+.+++++.||++++||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4677888 44443 3332 34677787775 33333344444 4578999999995 678999999999999996
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 154 (281)
... ..++..++.|..+|.++.|++... .++++|+|++||+|+.....+ +++ ..+|...|....|+|.
T Consensus 91 ~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----v~T----f~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 91 TMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----VQT----FNGHNSCIYQAAFSPHI 159 (311)
T ss_pred CCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-----eEe----ecCCccEEEEEecCCCC
Confidence 433 246788999999999999999754 578889999999998876542 333 3589999999999994
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
...+++++.|+++++||++... +.. ....|...+.++.|+. ..++++|+.|+.++.|+++.-.
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~g----------k~~--~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--- 224 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPG----------KFM--SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--- 224 (311)
T ss_pred CCeEEEccCCceEEEEEecCCC----------cee--EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---
Confidence 5799999999999999976321 111 1223677899999985 5689999999999999886421
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+ +....+|...|+.++|+|....+|||++.|-++|||+...
T Consensus 225 ~p-----l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 225 TP-----LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred cc-----ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 11 3344789999999999998888999999999999999764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=186.52 Aligned_cols=253 Identities=29% Similarity=0.444 Sum_probs=195.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEE-cC-CCCEEEEecCCCcEEEEEec
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSW-NA-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~-~~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
.|.+.|-.+...-.|++|||++.|++|+|+....+. ...+.++.||.++|+.++| +| .|.+|++++.||.|.+|.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 377788888888889999999999999999985544 3678899999999999999 55 79999999999999999977
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCC--eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 154 (281)
++ .+........|...|++++|-|.+- .|+.+|.||+|.+.+..... .+ . ......+|+-.|++++|.|.
T Consensus 89 ~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g--~w-~---t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 89 NG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG--GW-T---TSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred CC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC--Cc-c---chhhhhccccccceeeecCcC
Confidence 65 4445667788999999999999754 78999999999999876541 11 1 11223478899999999885
Q ss_pred --C-----------CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-----ceeeecCC
Q 023500 155 --G-----------DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIASGAA 216 (281)
Q Consensus 155 --~-----------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 216 (281)
| +.|++|+.|..+++|+.+.. .|...+.+. .|...|+.++|.|. ..+++++.
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---------~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---------SWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCc---------chhhhhhhh-hcchhhhhhhhccccCCCceeeEEecC
Confidence 3 56999999999999987643 123333332 37888999998874 47999999
Q ss_pred CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 217 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
|+.+.+|....+. .+-...++ ......+..++|++.| ++|+.++.|+.|.+|.-
T Consensus 232 Dg~viIwt~~~e~---e~wk~tll---~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWTKDEEY---EPWKKTLL---EEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKE 285 (299)
T ss_pred CCcEEEEEecCcc---Cccccccc---ccCCcceEEEEEeccc-cEEEEecCCcEEEEEEe
Confidence 9999999665321 11111121 1234568999999976 57888888999999974
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=207.57 Aligned_cols=163 Identities=30% Similarity=0.487 Sum_probs=145.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.|++++.+|...+++|+|.|-+|++|+... .+.|..+++||..-|.+++|+| |.+.++|+|-|++|+||.+.+.
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~- 173 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP- 173 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-
Confidence 889999999999999999999999999998764 5778999999999999999999 7788999999999999998544
Q ss_pred eeEEeEeecCCccceeEEEecCCC--CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.+-.++.+|...|+|+.+-|-+ .+++||+.|.++|+||..+. .|++++. ||...|.++.|+|.-..+
T Consensus 174 --~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----~CV~TLe----GHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 174 --HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----SCVQTLE----GHTNNVSFVFFHPELPII 242 (794)
T ss_pred --CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----HHHHHhh----cccccceEEEecCCCcEE
Confidence 3567889999999999998755 48999999999999977653 5777775 899999999999999999
Q ss_pred EEeeCCCcEEEEeCCcccc
Q 023500 159 VSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~ 177 (281)
++|+.||++|+|+..+.+.
T Consensus 243 isgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred EEecCCccEEEecCcceeh
Confidence 9999999999998765443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=194.10 Aligned_cols=240 Identities=26% Similarity=0.502 Sum_probs=190.5
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.++|.++.|+..|.||++++.|+++.|||..++.. ...+.-|..+-..|.|-. ..-+++++.|+.|+|+.+....
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~--~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV--KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE--EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCC
Confidence 3899999999999999999999999999999988754 445566777766788853 3568999999999999985443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-----
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG----- 155 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----- 155 (281)
++.++.+|...|.+++|+|.+.+|+++|.|++++||...... +...+ .+|...|..+.|+|++
T Consensus 351 ---P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l----~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 351 ---PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDL----QAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ---cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-----chhhh----hhhccceeeEeecCCCCccCC
Confidence 467788999999999999999999999999999999665432 22223 3788899999999854
Q ss_pred ----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 156 ----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 156 ----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
..+++++.|+++++||+..+. +++.+. .|..+|.+++|+|++ ++++|+.|+.+.+|..+...
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv-----------~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~- 485 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGV-----------PIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK- 485 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCc-----------eeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh-
Confidence 579999999999999987442 334443 378999999999987 68899999999999665431
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+++. ..-...|..+.|+.+|.. +..+..|+.+++-|++
T Consensus 486 --------l~~s-~~~~~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 --------LVKS-YQGTGGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred --------eeEe-ecCCCeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 1222 223455899999998854 5666679999998875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-28 Score=193.38 Aligned_cols=239 Identities=36% Similarity=0.637 Sum_probs=188.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+..+.|+|+++++++++.|+.+.+|+...++ ....+.+|...+.++.|+|++.++++++.|+.+.+|++...+
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 126 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK- 126 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-
Confidence 56778899999999999999999999999987653 355677899999999999998899999989999999986443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+..|...+.++.|+|++.++++++.|+.+++|++.... ....+ ..|...+.++.|+|+++.++++
T Consensus 127 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 127 --CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATL----TGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred --EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeE----ecCccccceEEECCCcCEEEEe
Confidence 345566888899999999998888888889999999886432 12222 2567789999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||....+.. ..+ ..+...+.++.+++++.++ +++.++.+++|+.... ...
T Consensus 196 ~~~~~i~i~d~~~~~~~-----------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---------~~~ 254 (289)
T cd00200 196 SSDGTIKLWDLSTGKCL-----------GTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---------ECV 254 (289)
T ss_pred cCCCcEEEEECCCCcee-----------cch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---------eeE
Confidence 99999999998643211 111 1255688999999976544 4445999999976532 122
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.....|...|.++.|+|++. ++++++.||.+++|+
T Consensus 255 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred EEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 23347888999999999865 578999999999996
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=214.66 Aligned_cols=258 Identities=26% Similarity=0.457 Sum_probs=193.4
Q ss_pred ccceeEEEEcCCCCEEEEee--CCCcEEEEecCC----------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 3 TRTVRSCAWSPSGKLLATAS--FDATTCIWEDVG----------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~--~d~~i~lw~~~~----------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
.+.|..++.+|+|..+|||+ .|+.++||+... .-.+.+..+..|.+.|+|+.|+|||.+||+||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 46789999999999999999 999999997321 112346677889999999999999999999999999
Q ss_pred EEEEEecC---------------CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 71 VWIWEVMP---------------GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 71 v~~w~~~~---------------~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
|.+|.-.. -+.+.+...+.+|...|..++|+|++.+++++|.|++|.+|+... +.++..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-----F~~~~v- 166 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-----FELLKV- 166 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-----ceeeee-
Confidence 99998652 013456778999999999999999999999999999999995443 223333
Q ss_pred eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc-------ccccC--------------C-------------
Q 023500 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT-------RMQSG--------------D------------- 181 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~-------~~~~~--------------~------------- 181 (281)
..+|...|..+.|.|-|++|++=+.|++|++|.+..- ++... +
T Consensus 167 ---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 167 ---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred ---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 3589999999999999999999999999999974310 00000 0
Q ss_pred -------CCcccceeEEeecccCcceEEEEeCCC------c------------eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 182 -------GYASWRHLCTISGYHDRTIFSVHWSRE------G------------IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 182 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~------~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+...|+....+. .|..++.++.|.|. . ++|+|+.|+++-+|..... .|
T Consensus 244 ~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----RP-- 316 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----RP-- 316 (942)
T ss_pred cceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC----Cc--
Confidence 001122222232 37788999988761 1 5788999999999965321 11
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++....-....|.+++|+|+|.. |..||.||+|.+..+..
T Consensus 317 --l~vi~~lf~~SI~DmsWspdG~~-LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 317 --LFVIHNLFNKSIVDMSWSPDGFS-LFACSLDGTVALIHFEE 356 (942)
T ss_pred --hhhhhhhhcCceeeeeEcCCCCe-EEEEecCCeEEEEEcch
Confidence 11112223457999999999875 55789999999988753
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=206.44 Aligned_cols=251 Identities=25% Similarity=0.372 Sum_probs=197.9
Q ss_pred cceeEEE-EcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCA-WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~-~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.|.++. +.|..++||.+++.+.+++|+..+... ..+.||++.|.+++...+|.+|+|||.|+++++|.+.+.. .
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~ 400 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK 400 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence 5566665 566778999999999999998766543 2678999999999965677899999999999999994332 2
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..++....+|...|.+|+++-.+. .++++|.|+++++|++....................|...|++++++|+..+++|
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 345566789999999999966543 7899999999999988763222111111112223479999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|.+.++|+.+. .+.+..++ .|.+.+.+++|++. ..+++++.|+++++|.+.. ..+
T Consensus 481 ~SqDktaKiW~le~-----------~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~---------fSC 539 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQ-----------LRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST---------FSC 539 (775)
T ss_pred cccccceeeecccC-----------ceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEecc---------cee
Confidence 99999999998751 13344444 48999999999985 6789999999999996643 345
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++...+|...|..+.|-.++++ |+||+.||.++||++.+
T Consensus 540 lkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt 578 (775)
T KOG0319|consen 540 LKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKT 578 (775)
T ss_pred eeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccc
Confidence 6777899999999999998875 66999999999999865
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=198.11 Aligned_cols=251 Identities=24% Similarity=0.450 Sum_probs=180.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee------eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC------VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
.-+-|..|+|||++|++|+.||-|.+|+..+++... --.+--++.+|.|+.|+.|...+++|+.||.|++|.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 346788999999999999999999999987664321 11233478899999999999999999999999999998
Q ss_pred CCCeeEEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+. |++.+. +|...|+|+.|+.++..+++++.|-++++.-+. +.+++.. ..||..-|+...|.++|.
T Consensus 294 tG~---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-----SGK~LKE----frGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 294 TGQ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-----SGKCLKE----FRGHSSYVNEATFTDDGH 361 (508)
T ss_pred cch---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-----cchhHHH----hcCccccccceEEcCCCC
Confidence 764 666555 899999999999999999999999999998333 3334333 359999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCccccccCC-----CCc--------ccce---eEE------eecccCcceEEE-----------
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGD-----GYA--------SWRH---LCT------ISGYHDRTIFSV----------- 203 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~-----~~~--------~~~~---~~~------~~~~~~~~v~~~----------- 203 (281)
++++++.||++++|+.+...+...- .+. +... .|. +...+...|.++
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence 9999999999999987654322110 000 0000 000 001122223322
Q ss_pred --EeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 204 --HWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 204 --~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+|.|. +...+.|+.++.|....+. +-.....|+..|-.++.+|. ++++|+-++||.+++|.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPH-qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPH-QNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCcc-cchhhhhcccchhhhcC
Confidence 2233332 3445566666666443321 12234568888999999996 57899999999999996
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=184.22 Aligned_cols=248 Identities=23% Similarity=0.382 Sum_probs=172.9
Q ss_pred ccceeEEEEcCC-CCEEEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPS-GKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.+.|.+++|+|. ..+++.||+|++|++|++.. +.... +....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 478999999994 45677999999999999865 34433 5667799999999999999999999999999999998875
Q ss_pred eeEEeEeecCCccceeEEEecCCCC--eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
...+..|...|.++.|-+... .|++||+|.++|.||..... .+.+++ -+++|.+++.-. .++
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----pv~t~~-----LPeRvYa~Dv~~--pm~ 169 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----PVATLQ-----LPERVYAADVLY--PMA 169 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----eeeeee-----ccceeeehhccC--cee
Confidence 345678999999999988766 89999999999999876542 233332 246677766543 367
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.+..+..|.+|+++........- ..-..-.++|++..++ ...+.|+-+|.+.+..+......+.-.++
T Consensus 170 vVata~r~i~vynL~n~~te~k~~----------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRI----------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhh----------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 788888999999875322111100 0001223455544432 23477888888888766543221111122
Q ss_pred eeeeeccC--CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 238 MLLKKEKA--HDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 238 ~~~~~~~~--h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
........ --..|++|+|+|. ...|+|+|.||+..+||-.
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeccCCCCCCceEEecceEeecc-cceEEEecCCceEEEecch
Confidence 22111100 1235889999996 4568899999999999943
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=202.29 Aligned_cols=227 Identities=19% Similarity=0.336 Sum_probs=164.7
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w 74 (281)
|.+.|++++|+| ++++||+|+.|++|+|||..+.. ..++..+.+|...|.+++|+|++ .+|++|+.|++|++|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 788999999999 88999999999999999976432 13467789999999999999975 689999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc-EEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~ 153 (281)
|+..+. ....+.+|...|.+++|+|++.++++++.|++|++||+.... .+..+ .+|... +..+.|.+
T Consensus 154 Dl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl----~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 154 DVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSV----EAHASAKSQRCLWAK 221 (493)
T ss_pred ECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEE----ecCCCCcceEEEEcC
Confidence 997653 456678899999999999999999999999999999987542 22222 245443 44678888
Q ss_pred CCCEEEEee----CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecC-CCCcEEEEeccc
Q 023500 154 KGDKLVSCS----DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVESK 227 (281)
Q Consensus 154 ~~~~l~s~~----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~~~~~~~~~ 227 (281)
++..+++++ .|+.|++||++.... +...........+....+++++ ++++++ .|+.+++|+...
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~----------p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMAS----------PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCC----------ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 877777654 478999999753211 1111111112234445567665 455555 699999998764
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
+.. .......+..++..++|.|.
T Consensus 292 ~~~--------~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 ERL--------TFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred Cce--------EEEeeccCCCCCcceEeccc
Confidence 321 11112234556778888884
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=182.93 Aligned_cols=243 Identities=26% Similarity=0.397 Sum_probs=191.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|..+.|.+|+..+++++.|..++.||..+++ +...+++|.+-|+.+.-+.-|. ++.|+++|+++++||++...
T Consensus 89 HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 89 HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ccceeEeeeeccCCCEEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 78899999999999999999999999999998885 5778889999999998443444 57789999999999997443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++.++. ...+++++.|..++..+++|+-|+.|++||+...+ .... ..||...|+.+..+|+|.++.+
T Consensus 167 ---~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~----lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 167 ---AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYT----LSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ---hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc-----ceEE----eecccCceeeEEeccCCCcccc
Confidence 333332 35568999999999999999999999999886543 2222 3589999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecc---cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
-+.|.++++||.+...+. .+.+..+.+. .+.....++|+|++ .+.+|+.|+.+.+|+...
T Consensus 234 nsMd~tvrvwd~rp~~p~-------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~--------- 297 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPS-------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS--------- 297 (338)
T ss_pred ccccceEEEEEecccCCC-------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---------
Confidence 999999999998643221 1222222221 23445677899876 567788999999996643
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++....+|...|+++.|+|..+ ++.+++.|.+|.+=+
T Consensus 298 r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 RRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLGE 336 (338)
T ss_pred ccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEeec
Confidence 234566789999999999999875 678999999998744
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=195.04 Aligned_cols=253 Identities=25% Similarity=0.393 Sum_probs=194.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee---------------eeeee-cCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---------------CVATL-EGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~---------------~~~~~-~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|+.+|.+++++|++++..+++.|++|.=|+..++... +...- ++|.+.+.+++.+|||++|++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 8899999999999999999999999999987654311 01111 3788999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
+.|+.|.+|+..+.+ .+.++.+|...|.+++|-...+.++++|.|++|++|.++... +.....+|+..
T Consensus 221 g~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---------~vetlyGHqd~ 288 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---------YVETLYGHQDG 288 (479)
T ss_pred CCCceEEEecCcccc---hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---------HHHHHhCCccc
Confidence 999999999987554 467789999999999999888899999999999999776532 22334589999
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
|..++-...++.+-.|+.|.++++|++.-. .++ +...+...+-|+++-.+..+++|+.||.+.+|..
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----------sql--ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEE-----------SQL--IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred eeeechhcccceEEeccccceeEEEecccc-----------cee--eeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence 999988777777777789999999987311 111 1113466788999999999999999999999976
Q ss_pred ccCCCc-CCccceeeee--eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLI-DGPSYKMLLK--KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~-~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+..+. .....+-... ....+..+|++++..|. ..++|+|+.+|.||+|.+...
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCC
Confidence 543221 1000000111 11233458999999995 569999999999999998643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=179.41 Aligned_cols=252 Identities=26% Similarity=0.465 Sum_probs=185.1
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+|...|..++|+-+|..||+|+.|+++.+|+....++..-....+|.+.|-.+.|+| ...++++++.|++|++||++.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 477889999999999999999999999999987665433445678999999999988 6789999999999999999877
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC------------c-------------eeeee
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN------------W-------------HCVQT 134 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~------------~-------------~~~~~ 134 (281)
+. ...+....+ -.-+.|+|++.+++.++.|..|...|........ | -++.-
T Consensus 98 k~---~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 98 KC---TARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cE---EEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 53 333332233 3457899999999999999999888865421100 0 00000
Q ss_pred -------eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC
Q 023500 135 -------ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207 (281)
Q Consensus 135 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (281)
......+|+..+.|+.|+|+|++|++|+.|..+.+||++-.-+ .+ .+ ..++-+|..++|+-
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--------~R---~i-sRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--------ER---CI-SRLDWPVRTLSFSH 241 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------he---ee-ccccCceEEEEecc
Confidence 0112358999999999999999999999999999999752111 11 11 23688999999998
Q ss_pred Cc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC---------CeEEEEEc
Q 023500 208 EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD---------GMIKIWEL 277 (281)
Q Consensus 208 ~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D---------g~v~iw~~ 277 (281)
+| ++++++.|-.+-+-.+..+ . .+. +-.++++...++|+|+. .+||-+.+| |.|+||.+
T Consensus 242 dg~~lASaSEDh~IDIA~vetG-----d---~~~--eI~~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETG-----D---RVW--EIPCEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CcceeeccCccceEEeEecccC-----C---eEE--EeeccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecC
Confidence 76 6788888877766644332 1 221 12467889999999974 577755543 57888876
Q ss_pred cc
Q 023500 278 AN 279 (281)
Q Consensus 278 ~~ 279 (281)
.+
T Consensus 311 ~~ 312 (313)
T KOG1407|consen 311 SN 312 (313)
T ss_pred CC
Confidence 54
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=187.66 Aligned_cols=247 Identities=22% Similarity=0.338 Sum_probs=196.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..+++++--.||.+++.|+.|+-||...+++ +..+.||-..|.|++.+|.-+.|+|||.|-++|+||++...
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv--IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~- 268 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV--IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA- 268 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhhhh--HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-
Confidence 567889999999999999999999999999987754 67888999999999999999999999999999999997553
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.++.+|...|..|.+.|....+++||.|++|++||+..... ..++ ..|...|.+++.+|....++++
T Consensus 269 --~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt-----~~tl----t~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 269 --SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT-----MITL----THHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred --eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce-----eEee----ecccceeeEEecCCchhhhhcc
Confidence 4788999999999999999999999999999999998865431 2222 2588899999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|. |+-|++.-+.+.. .+ ..|..-+.+++...++++++|+.++.+.+|+.+.+-..+..... ...
T Consensus 338 s~dn-ik~w~~p~g~f~~-----------nl-sgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~-vqp 403 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEGEFLQ-----------NL-SGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTI-VQP 403 (460)
T ss_pred CCcc-ceeccCCccchhh-----------cc-ccccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccccc-ccC
Confidence 9885 8999764332211 11 23677788899999999999999999999988754322111000 000
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....+..|.+.+|...+.+ |++|..|.+|++|+=
T Consensus 404 GSl~sEagI~as~fDktg~r-lit~eadKtIk~~ke 438 (460)
T KOG0285|consen 404 GSLESEAGIFASCFDKTGSR-LITGEADKTIKMYKE 438 (460)
T ss_pred CccccccceeEEeecccCce-EEeccCCcceEEEec
Confidence 11123456889999987776 569999999999973
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-28 Score=183.75 Aligned_cols=259 Identities=18% Similarity=0.303 Sum_probs=184.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC------------------------------------ceeeeeee--
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG------------------------------------DYECVATL-- 43 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~------------------------------------~~~~~~~~-- 43 (281)
|.+.|++++|+.||+.|||++.|++|+||+...- ...++..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 7899999999999999999999999999985321 00011100
Q ss_pred -------------------cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC
Q 023500 44 -------------------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104 (281)
Q Consensus 44 -------------------~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 104 (281)
+-|.-.+..+-....+.+|+|++.|..|.+|++. ++. +..+...+..-...+.+|+|
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~---L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL---LQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce---eeeeccccccccceeeCCCC
Confidence 0133345555556677899999999999999997 543 34445555566778899999
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 184 (281)
..+++++...-|++|.+--...+.++.+.+.. ..+||.+.|..++|+++.+.+++.+.||++++||++.++...++...
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~ 319 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI 319 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence 99999999999999987544444444443332 34699999999999999999999999999999999876543332211
Q ss_pred ccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
++...............++.+|+|.+++.+...++++|....+. .+-..+..|+..|.+++|+++|+ +++
T Consensus 320 -Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~~g~-~~a 389 (420)
T KOG2096|consen 320 -LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK--------DYPELEDIHSTTISSISYSSDGK-YIA 389 (420)
T ss_pred -hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc--------cchhHHHhhcCceeeEEecCCCc-EEe
Confidence 11110000011233347888999988888888889998554321 12223567999999999999987 477
Q ss_pred EeCCCCeEEEEE
Q 023500 265 SASDDGMIKIWE 276 (281)
Q Consensus 265 s~~~Dg~v~iw~ 276 (281)
||| |..+|+.-
T Consensus 390 tcG-dr~vrv~~ 400 (420)
T KOG2096|consen 390 TCG-DRYVRVIR 400 (420)
T ss_pred eec-ceeeeeec
Confidence 887 78888764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=203.81 Aligned_cols=241 Identities=21% Similarity=0.339 Sum_probs=185.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe---
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE--- 81 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~--- 81 (281)
.+.+..|-|-++++++|...|.+.+||..... .+.+..+|++.|++++.+||+..+++||+|++|++||......
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASAS--LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhh--hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 34555666666666666666666666654432 2445678999999999999999999999999999999752211
Q ss_pred --eEE-----eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 82 --FEC-----VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 82 --~~~-----~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
... .+++ .-...|-|++++|++.+++.+=-|++|++|.+++. .+.....||.-+|.|++.+||
T Consensus 492 t~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred ccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCC
Confidence 000 0111 23567899999999999999999999999977653 233445699999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
+.+++||+.|..|++|.++.+.+.. .. ..|+..|.++.|-|+. ++.+++.|+.++-|+-.+-
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHK--------S~----fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF----- 624 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHK--------SF----FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF----- 624 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhh--------hh----hcccCceeEEEEcccceeEEEecCcceEEeechhhh-----
Confidence 9999999999999999988765531 11 1378899999999864 6889999999999955331
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .+....+|...|++++.+|+|. +++|+|.|..||+|+...
T Consensus 625 ---e-~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 625 ---E-EIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---h-hheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 2 2344568889999999999886 577999999999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=198.29 Aligned_cols=228 Identities=14% Similarity=0.271 Sum_probs=159.0
Q ss_pred eeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCe-----eEEeEeecCCccc
Q 023500 21 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNE-----FECVSVLQGHAQD 94 (281)
Q Consensus 21 g~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~-----~~~~~~~~~~~~~ 94 (281)
|+.++.++||+.... .++..+.+|.+.|.+++|+|+ +.+|+|||.|++|++||+..... ..+...+.+|...
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 566788999987554 357788999999999999996 78999999999999999975421 1234467889999
Q ss_pred eeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 95 VKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 95 v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|.+++|+|++.. +++++.|++|++||++... ....+ .|...|.+++|+|++.+|++++.|+.|++||.+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----~~~~i-----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----RAFQI-----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----EEEEE-----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 999999999875 5799999999999987642 12222 244679999999999999999999999999986
Q ss_pred ccccccCCCCcccceeEEeecccCcceE-----EEEeCCC-ceeeecCCCC----cEEEEecccCCCcCCccceeeeeec
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIF-----SVHWSRE-GIIASGAADD----SVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~-~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
.... ...+. .|...+. ...++++ +++++++.++ .+++|+.+... .... ....
T Consensus 198 sg~~-----------i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~--~~~l 259 (568)
T PTZ00420 198 KQEI-----------ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----SALV--TMSI 259 (568)
T ss_pred CCcE-----------EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----CceE--EEEe
Confidence 4321 11222 2333222 2233344 5677766553 79999876321 1111 1112
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+...+.- .|.++...++++|+.|+.||+|++..
T Consensus 260 d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 260 DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccC
Confidence 223333322 34444445788999999999999853
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=196.90 Aligned_cols=235 Identities=24% Similarity=0.399 Sum_probs=190.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE-EEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS-VSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|+..|..+++.+ +..++++|-|+++++|+...+.+...+.+.+|.+-|.+ +++-+ ++-+|++|+.|.++.+|.....
T Consensus 13 H~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~ 91 (745)
T KOG0301|consen 13 HKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA 91 (745)
T ss_pred CccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence 778888888764 44677999999999999877777666778888888877 88876 4557999999999999998655
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. +..++.+|...|+|+....++. ++|||+|.++++|...+.. ....+|++.|+++..-|++ .++
T Consensus 92 ~---P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----------~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 92 E---PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----------YSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred C---chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-----------cccCCcchheeeeeecCCC-cEE
Confidence 4 5678999999999998777766 9999999999999654422 1235899999999999998 788
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
||+.|.+|++|.-+ +.+.++++ |+..|+.++.-+++.+++++.||.+++|+...+ .
T Consensus 156 TgsaDKtIklWk~~-------------~~l~tf~g-HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----------~ 211 (745)
T KOG0301|consen 156 TGSADKTIKLWKGG-------------TLLKTFSG-HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----------V 211 (745)
T ss_pred eccCcceeeeccCC-------------chhhhhcc-chhheeeeEEecCCCeEeecCCceEEEEeccCc----------e
Confidence 99999999999543 22234443 899999999999999999999999999977432 3
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.+..+|+.-|.+++..+.+ .+++|+|+|+++|||+..
T Consensus 212 l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC
Confidence 45567899999999955544 478899999999999853
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=203.03 Aligned_cols=238 Identities=19% Similarity=0.369 Sum_probs=183.7
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEecCCC-ceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCee
Q 023500 6 VRSCAWSP-SGKLLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 6 i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+..+.|.. +.++|||++..|.|.+||+... ..+.+..+.+|...++++.|++ ...+|+|||+|++|++||++....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 44566775 5679999999999999998651 2234668899999999999998 577899999999999999986653
Q ss_pred EEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..++.+..+.|+.|+|+|. ++.++++.+.|.+++||+...+ ++. ....+|.++|.|+.|+|++.+||||
T Consensus 169 --~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~----~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 169 --KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCE----KKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred --cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----hHH----HHhhcccCceEEEeecCCCceeeec
Confidence 4556678889999999996 5578888888999999998753 222 3345899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC--CCCcEEEEecccCCCcCCccce
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA--ADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~--~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++|++++||+...... ....++ ....++..+.|-|+. .+++++ .|-.+++|+++.--+
T Consensus 239 GRDK~vkiWd~t~~~~---------~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI------- 300 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRA---------KPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI------- 300 (839)
T ss_pred CCCccEEEEeccCCCc---------cceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-------
Confidence 9999999998863221 111222 135788899998864 566655 577999998764211
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
-......|...++.++|....+..+.+++.||+|.
T Consensus 301 -P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 301 -PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred -cceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 12234578888999999886677788999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=192.03 Aligned_cols=226 Identities=18% Similarity=0.316 Sum_probs=158.5
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCce------eeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEE
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY------ECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWI 73 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~ 73 (281)
|.+.|++++|+|+ +.+||+|+.|+.|+|||...+.. .++..+.+|...|.+++|+|++.. |+++|.|++|++
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 7889999999996 78999999999999999754321 234567899999999999998875 579999999999
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE-----EE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI-----WA 148 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~ 148 (281)
||+..+.. ...+. |...|.+++|+|++.++++++.|++|++||+.... .+..+ .+|.+.+ +.
T Consensus 153 WDl~tg~~---~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~tl----~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 153 WDIENEKR---AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IASSF----HIHDGGKNTKNIWI 219 (568)
T ss_pred EECCCCcE---EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEEEE----ecccCCceeEEEEe
Confidence 99976643 23333 45679999999999999999999999999887542 22222 3565433 34
Q ss_pred EEEccCCCEEEEeeCCC----cEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEE
Q 023500 149 LSFNAKGDKLVSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQF 222 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~ 222 (281)
..|++++.+|++++.|+ .|++||++... .++..... .....+...-..+.+ ++++|..|+.+++
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 45668888999988764 79999986311 11111110 011122111112334 5778889999999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCC
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
|....+. ...+. ...+..++..++|.|+
T Consensus 290 ~e~~~~~-------~~~l~-~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 290 YQHSLGS-------IRKVN-EYKSCSPFRSFGFLPK 317 (568)
T ss_pred EEccCCc-------EEeec-ccccCCCccceEEccc
Confidence 9775421 11122 2236678889999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=194.38 Aligned_cols=236 Identities=29% Similarity=0.564 Sum_probs=184.7
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+.|+++++..-+.++++|+.|.++++||..++ .|...+.+|.+.|.++... +..+++||.|.+|++|++.++
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc-
Confidence 48999999999987889999999999999998777 5788999999999998764 467888999999999999755
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.++..+.+|...|+++..+ +.++++|+.|++|++|++.. .+++..+ .+|...|.++.+.+. ..+++
T Consensus 322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-----~~cl~sl----~gH~~~V~sl~~~~~-~~~~S 387 (537)
T KOG0274|consen 322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-----GKCLKSL----SGHTGRVYSLIVDSE-NRLLS 387 (537)
T ss_pred --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-----ceeeeee----cCCcceEEEEEecCc-ceEEe
Confidence 3677888899999999998 78999999999999998873 2455555 489999999988765 78999
Q ss_pred eeCCCcEEEEeCCcc-ccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADIT-RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|+.|++|++||+... ++. ..+. .|...+..+. ..+..+++++.|+.+++|+......
T Consensus 388 gs~D~~IkvWdl~~~~~c~-----------~tl~-~h~~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~~~~--------- 445 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCI-----------HTLQ-GHTSLVSSLL-LRDNFLVSSSADGTIKLWDAEEGEC--------- 445 (537)
T ss_pred eeeccceEeecCCchhhhh-----------hhhc-CCcccccccc-cccceeEeccccccEEEeecccCce---------
Confidence 999999999998755 221 1111 1333333222 2356789999999999997755322
Q ss_pred eeeccC-CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 240 LKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 240 ~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.....+ |...|.++++. ...+++++.|+.+++||+++.
T Consensus 446 ~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccC
Confidence 222223 56778888776 235779999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=184.27 Aligned_cols=252 Identities=22% Similarity=0.244 Sum_probs=187.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+.|.+++.++||+|||+|+.|..+.||+..+. ++++.+.+|.+.|.+++|......|+++|.|++|++|++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~- 276 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL- 276 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-
Confidence 48889999999999999999999999999998766 467889999999999999988889999999999999998543
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..+.++.+|++.|..+....-...+-.|+.|+++++|++.+.. + ....+|...+-|++|-.+ ++|++
T Consensus 277 --s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-------q---lifrg~~~sidcv~~In~-~Hfvs 343 (479)
T KOG0299|consen 277 --SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-------Q---LIFRGGEGSIDCVAFIND-EHFVS 343 (479)
T ss_pred --HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-------e---eeeeCCCCCeeeEEEecc-cceee
Confidence 3466788999999999888777788888899999999885431 1 122467778999999755 58999
Q ss_pred eeCCCcEEEEeCCccccccCCCCccc-ceeEEeecccCcceEEEEeCC-CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASW-RHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
|+.+|.|.+|++...++......+.- .+.. -...+...|.++...+ ..++++|+.+|.+++|.+..+-..- .
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i-----~ 417 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI-----N 417 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCc-cccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc-----c
Confidence 99999999999865544332211110 0000 0001123677777665 4688999999999999876532111 1
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
.+... .-.+.|+++.|+++|+++++..+..-.+==|
T Consensus 418 ~l~~l-s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 418 LLYSL-SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeeec-ccccEEEEEEEccCCCEEEEeccccccccee
Confidence 12222 2456799999999998888776665444333
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=181.80 Aligned_cols=235 Identities=20% Similarity=0.347 Sum_probs=184.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
++.|..+.|-.||++||.|+..|.++|||..+. ..+..+.+|+.+|..+.|+|. +..+++|++|+.+++||+....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~- 144 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY- 144 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-
Confidence 467889999999999999999999999994332 346778899999999999995 5678899999999999996443
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
. ...+.+|.+.|+|.+|+|... .++|||.||+|++||...... .+.++ .|..+|-.+.+-|.|..+++
T Consensus 145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~el-----nhg~pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVEL-----NHGCPVESVLALPSGSLIAS 213 (487)
T ss_pred -E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEe-----cCCCceeeEEEcCCCCEEEE
Confidence 2 567899999999999999755 789999999999998876531 23333 47788999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
++.. .+++||+..+... ++.+ ..|..+|+|+.+..+ ..+++++-|+.+++|+.... +.
T Consensus 214 AgGn-~vkVWDl~~G~ql----------l~~~-~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--------Kv- 272 (487)
T KOG0310|consen 214 AGGN-SVKVWDLTTGGQL----------LTSM-FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY--------KV- 272 (487)
T ss_pred cCCC-eEEEEEecCCcee----------hhhh-hcccceEEEEEeecCCceEeecccccceEEEEccce--------EE-
Confidence 8855 5999998644321 1222 238899999998765 47999999999999975321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEE
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~i 274 (281)
. ......++|.+++.+|+++. ++.|-.||.+.+
T Consensus 273 v-~s~~~~~pvLsiavs~dd~t-~viGmsnGlv~~ 305 (487)
T KOG0310|consen 273 V-HSWKYPGPVLSIAVSPDDQT-VVIGMSNGLVSI 305 (487)
T ss_pred E-EeeecccceeeEEecCCCce-EEEecccceeee
Confidence 1 12235689999999998765 567888998755
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=175.76 Aligned_cols=245 Identities=25% Similarity=0.397 Sum_probs=197.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE------ 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~------ 75 (281)
|.+.|+.++-.....++.+++.|.+.+||..+.+ .|+..+.||.+.|++++|+|.+.+++++|.|++..+|.
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 8899999999988899999999999999998877 47889999999999999999999999999999999996
Q ss_pred ecCC---------C----------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 76 VMPG---------N----------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 76 ~~~~---------~----------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
+... + ...++..+.+|...|.+..|-..++.++++|+|.+..+||++..
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 2110 0 00134567899999999999999999999999999999999876
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
. +.....||....+.++-+|..+++++.+.|-+.++||... . .+.......|...|++..
T Consensus 305 e---------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-a----------I~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 305 E---------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-A----------IQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred c---------eeccccCcchhccccccCCcceEEEEeccCceeEeccchh-h----------cceeeeecccccceeEEE
Confidence 4 2234468999899999999999999999999999998751 1 112222235889999999
Q ss_pred eCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 205 WSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 205 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|..+..+++|+.|.++++|+.+. +.. +.-.+ --.++++.++.+..+ .+++.--++..||+||+.
T Consensus 365 F~~dd~vVSgSDDrTvKvWdLrN--MRs--plATI-----RtdS~~NRvavs~g~-~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 365 FNTDDRVVSGSDDRTVKVWDLRN--MRS--PLATI-----RTDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred EecCCceeecCCCceEEEeeecc--ccC--cceee-----ecCCccceeEeecCC-ceEEeccCCceEEEEecC
Confidence 99999999999999999997752 221 11111 124678889998754 577777778889999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-25 Score=166.41 Aligned_cols=247 Identities=18% Similarity=0.289 Sum_probs=175.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC--CCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~~w~~~~~~ 80 (281)
...|+++.|+++|.++++++.|.+++|||...+++ +.++..++-.+..+.|......++-++. |.+||.-++...+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 46799999999999999999999999999887754 5666767778888999766665555554 8999999986553
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.++.+.||...|++++.+|-++.++|+|.|++|++||+.... |...+.. ..-...+|+|+|-++|+
T Consensus 92 ---ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-----cqg~l~~------~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 92 ---YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-----CQGLLNL------SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred ---eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-----CceEEec------CCCcceeECCCCcEEEE
Confidence 588999999999999999999999999999999999887432 2222221 11235799999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.....|++||++...-. ... ...+..........++|+++|..+ .+..++.+.+.+.-. +.. ...
T Consensus 158 ~~~~~~IkLyD~Rs~dkg---PF~----tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-----G~~-~~t 224 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKG---PFT----TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-----GTV-KST 224 (311)
T ss_pred ecCCCeEEEEEecccCCC---Cce----eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-----CcE-eee
Confidence 988889999998743110 000 011111234566789999998544 444555566664332 221 111
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.....-..--....|.|+++ ++++|++||+|.+|++.+
T Consensus 225 fs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCC
Confidence 221111111225788999986 577999999999999864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=172.16 Aligned_cols=247 Identities=18% Similarity=0.302 Sum_probs=173.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+.|..+.|+|.+..|+.+++||.+++||....+. ...++ |..++.+++|.+ ...+++|+.||.|+.+|+..+++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l--~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL--KLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh--hhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 46799999999999888899999999999876532 33333 889999999976 56799999999999999987653
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..+..|...++|+.+.|-...+++||+|++|++||..... ....+. ....|.+++.+ +..|+.|+
T Consensus 88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d-----~~kkVy~~~v~--g~~LvVg~ 152 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD-----QGKKVYCMDVS--GNRLVVGT 152 (323)
T ss_pred ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc-----cCceEEEEecc--CCEEEEee
Confidence 3467899999999999999999999999999999876421 112221 23478888765 45799999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc--cceee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP--SYKML 239 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~ 239 (281)
.|..+.+||++.-....... .......++++++-|++ -+++++-||++.+=........+.+ .++..
T Consensus 153 ~~r~v~iyDLRn~~~~~q~r----------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRR----------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred cCceEEEEEcccccchhhhc----------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999986432211100 01123456677666632 3555677887766444322111111 11111
Q ss_pred eeec--cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 240 LKKE--KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 240 ~~~~--~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.... ..--.||++++|+|-- ..|+||+.||.|.+||+.+.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 1111 1123479999999974 46899999999999998764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=177.71 Aligned_cols=245 Identities=21% Similarity=0.336 Sum_probs=186.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|+.+.|+|+...+++++.|..|++|...... +......|.++|+.+..+|.|.+|++++.|++.-+-|++.+..
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeecccccc--CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 77889999999999999999999999999865443 4566788999999999999999999999999988888887764
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.-.... .+..-.++++.||||+.++.+|+.|+.+++||+.+... +.. ..+|.++|.++.|+-+|.+|+++
T Consensus 338 lt~vs~-~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-----~a~----Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 338 LTVVSD-ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-----VAK----FPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEEEee-ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-----ccc----CCCCCCceeEEEeccCceEEEEE
Confidence 322211 12334589999999999999999999999999876542 112 24799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++||++..+ ++ .++..-....+.+++|++.|. +++++.+ +++|...+. ......+
T Consensus 408 add~~V~lwDLRKl~-----n~------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--l~Vy~~~k~-----~k~W~~~ 469 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLK-----NF------KTIQLDEKKEVNSLSFDQSGTYLGIAGSD--LQVYICKKK-----TKSWTEI 469 (506)
T ss_pred ecCCeEEEEEehhhc-----cc------ceeeccccccceeEEEcCCCCeEEeecce--eEEEEEecc-----cccceee
Confidence 999999999986321 11 111111234688899998875 4445444 555544321 1113445
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....|.+..+.+.|.... ++++++|-|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 5666788889999998765 47889999999999865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=193.19 Aligned_cols=236 Identities=27% Similarity=0.478 Sum_probs=189.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+.+..|+ +.++++++.|+.|.+|+..++.. +...+.||.+.|+++++...+..|++|+.|+++++||...+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~-i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL-ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE-EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 45667777777 66788999999999999877653 34458999999999999888899999999999999997655
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+|..++.+|...+.++...+. .+++||.|.+|++|+++... ++..+ .+|.++|.++..+ +.++++|
T Consensus 282 -~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~-----~l~l~----~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGA-----CLNLL----RGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred -cEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcc-----eEEEe----ccccccEEEEEec--CCEEEEE
Confidence 588999999999999877664 77889999999999988542 33333 3599999999987 6799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|++|++||....+ .+..+.+ |...|.++.+..+..+++|+.|+++++|+....- .+..
T Consensus 348 s~d~~v~VW~~~~~~-----------cl~sl~g-H~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--------~c~~ 407 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGK-----------CLKSLSG-HTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR--------KCIH 407 (537)
T ss_pred ecCceEEEEEhhhce-----------eeeeecC-CcceEEEEEecCcceEEeeeeccceEeecCCchh--------hhhh
Confidence 999999999986432 2334444 8899999988877899999999999999775320 2344
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+|.+-+..+.+. + .++++++.|+.|++||...
T Consensus 408 tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred hhcCCcccccccccc--c-ceeEeccccccEEEeeccc
Confidence 456788878777665 2 3578999999999999753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=184.08 Aligned_cols=239 Identities=21% Similarity=0.316 Sum_probs=184.2
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..|..++|+|.-.+ +|+.+ .--+.||+..+.. ..+++.-....|.++.|..||++|++|+..|.|+++|+.+ +
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~--~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r-- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS--VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-R-- 100 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhh--hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-H--
Confidence 57999999997653 44433 2458899865543 3456667889999999999999999999999999999543 1
Q ss_pred EEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
..++.+.+|+.++..+.|+|.++ .+++|+.|+.+++|++.... + +....+|+..|.|.+|+|... .++|
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------v---~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------V---QAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------E---EEEecCCcceeEeeccccCCCeEEEe
Confidence 23567889999999999999876 57788888899999887642 1 222358999999999999755 8999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
|+-||+|++||++... .....+ .|+.+|-++.+-|.|.+++.+..+.+++|+...+. +..
T Consensus 172 GsYDg~vrl~DtR~~~----------~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--------qll 231 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLT----------SRVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--------QLL 231 (487)
T ss_pred cCCCceEEEEEeccCC----------ceeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--------eeh
Confidence 9999999999987432 112222 37889999999998766666666789999876432 233
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....|...|+|+.+..++.+ |+|+|.|+.|++|++.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~r-LlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTR-LLSGSLDRHVKVFDTT 268 (487)
T ss_pred hhhhcccceEEEEEeecCCce-EeecccccceEEEEcc
Confidence 333448889999999998876 5699999999999954
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=196.95 Aligned_cols=211 Identities=21% Similarity=0.446 Sum_probs=156.3
Q ss_pred eec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC----------------------------Ce-e---------
Q 023500 42 TLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG----------------------------NE-F--------- 82 (281)
Q Consensus 42 ~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~----------------------------~~-~--------- 82 (281)
.+. +|.+.|+++.|++||++||+||.|+-|+||.+... .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 89999999999999999999999999999997650 00 0
Q ss_pred -------------------EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 83 -------------------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 83 -------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
.+...+.+|.+.|-.+.|+-+ ++|+++|.|.+||+|++... .|+..+ .|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-----~CL~~F-----~Hn 409 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-----ECLKVF-----SHN 409 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-----ceeeEE-----ecC
Confidence 012236799999999999875 68999999999999987754 366555 489
Q ss_pred ccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEE
Q 023500 144 STIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQ 221 (281)
Q Consensus 144 ~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~ 221 (281)
.-|+|++|+| |.++|++|+-|+.+|||++.-.+. .-... ...-|+++++.|+|. .+.|+.+|.++
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V------------v~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV------------VDWND-LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCee------------Eeehh-hhhhheeEEeccCCceEEEEEeccEEE
Confidence 9999999999 667999999999999998742211 11111 236688999999885 66777899999
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+|......+...............|. .|+.+.|.|....-++..+.|..|||+|.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 99775433222111111112223444 89999999976543456677999999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=200.27 Aligned_cols=213 Identities=30% Similarity=0.535 Sum_probs=170.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC----------------CceeeeeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG----------------GDYECVATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~----------------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|...|+|+.|+|||++||+|+.|+.|.||+... ..+.++..+.+|+..|..+.|+|++.+|+++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 789999999999999999999999999998662 1344677889999999999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCC-----CCCc-----------
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD-----SDNW----------- 129 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~-----~~~~----------- 129 (281)
|.|++|.+|+.... +.++++.+|...|..+.|.|-|+++++-+.|++|++|+..+-. ..++
T Consensus 148 s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred cccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 99999999997655 5788999999999999999999999999999999999854310 0000
Q ss_pred --------------------eeeeeee-------eccCCccccEEEEEEccC-----CC------------EEEEeeCCC
Q 023500 130 --------------------HCVQTIS-------ESNNGHSSTIWALSFNAK-----GD------------KLVSCSDDL 165 (281)
Q Consensus 130 --------------------~~~~~~~-------~~~~~h~~~v~~~~~~~~-----~~------------~l~s~~~d~ 165 (281)
.++.-++ ....||.+++.+++|+|. .. .+|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 0000000 112489999999999982 12 688899999
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKD 228 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~ 228 (281)
+|.+|.+... +++.........+|..++|+|+|+ +++++.||++.++.....
T Consensus 305 SlSVW~T~~~-----------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 305 SLSVWNTALP-----------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cEEEEecCCC-----------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999987533 333333344578899999999986 788999999999976543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=188.26 Aligned_cols=246 Identities=22% Similarity=0.319 Sum_probs=192.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|+.++++.+...+++|+ .++++||+..+. .|+.++. .+.+.+..|-|.++++++|...|.+.++|+.+...
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~--kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL--KCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred chhheeEEEeecCceeeeecC-CCcEEEEEccCc--ceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 788999999999988888865 567999998766 4677766 35888999999999999999999999999976543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC--CCceeeeeeeec-cCCccccEEEEEEccCCCEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS--DNWHCVQTISES-NNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~--~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l 158 (281)
+..+.+|.+.|.+++..|++..+++||.|.+|++|++..... ...+.+..+... .-.-+..|.|+.+|||+++|
T Consensus 447 ---~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 447 ---VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLL 523 (888)
T ss_pred ---hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEE
Confidence 456679999999999999999999999999999998754322 111111111100 00125679999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.+--|.++++|-++..+. ..++. .|.-||.|+..+|++ ++++|+.|+++.+| ++.-+.
T Consensus 524 aVsLLdnTVkVyflDtlKF-----------flsLY-GHkLPV~smDIS~DSklivTgSADKnVKiW-----GLdFGD--- 583 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKF-----------FLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIW-----GLDFGD--- 583 (888)
T ss_pred EEEeccCeEEEEEecceee-----------eeeec-ccccceeEEeccCCcCeEEeccCCCceEEe-----ccccch---
Confidence 9999999999996653221 22233 388999999999875 78999999999999 333332
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+-+...+|...|.++.|.|+. .+|.+||.|+.|+-||-
T Consensus 584 -CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 584 -CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred -hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeech
Confidence 334456899999999999975 56789999999999973
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=157.23 Aligned_cols=249 Identities=23% Similarity=0.363 Sum_probs=181.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcC----CCCEEEEecC-CCcEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNA----SGTLLATCGR-DKSVWI 73 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~~~-d~~v~~ 73 (281)
|.+.|.|.+|+|.|+++|||++|..|++.-.+... ..+-..++-|++.|..++|-. .|..|+++|. |..|.+
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 78899999999999999999999999987543221 112235677999999999943 2456666653 666666
Q ss_pred EEecCCCeeEEeEeecCCccceeEE-EecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC---ccccEEEE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMV-QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG---HSSTIWAL 149 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v-~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~ 149 (281)
=|...++. ...+.+|..-|-.+ .| ++-.+++||.|.+|++||+.-. .++..+...... -...|.++
T Consensus 168 tdc~~g~~---~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~-----~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 168 TDCGRGQG---FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVN-----SCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred eecCCCCc---ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeecc-----ceeeeccCcccCCCcccceeEEE
Confidence 67666654 45577888877665 44 4568999999999999987543 133333221111 13568999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD 228 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 228 (281)
+..|.|++|++|-.|..+.+||++.+.+ +..+. .|...|.++.|+|.. ++++++.|..+++-+...+
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~-----------iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRM-----------IQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCce-----------eeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999999999999999999975432 22222 378899999999975 6889999999999987653
Q ss_pred CCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 229 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...+-+ .+ ....|...+..+.|+|++- -|++.+.|.++.+|-+.
T Consensus 306 la~el~--~~---vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LAHELP--IM---VVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred hhhcCc--eE---EEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 221111 11 2346888888899999875 46789999999999764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=180.18 Aligned_cols=243 Identities=23% Similarity=0.366 Sum_probs=178.3
Q ss_pred CCccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
-|.+.|.+++=+|.. ..+|+|+.||.++|||.... ++..++++|.+.|..+.+.. ..++++|+|++|+.|.+...
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 388999999999977 78999999999999998665 46789999999999999976 77999999999999984321
Q ss_pred Ce--e----------------------E-----------EeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCC
Q 023500 80 NE--F----------------------E-----------CVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 80 ~~--~----------------------~-----------~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~ 123 (281)
.. . + ++..+.-..+.|.+++|+|... .|++|+.|++|.++|...
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 00 0 0 1112222345678899999765 678888999999998876
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
.. .+..+.. ...-+.++|+|....++++..|..+..||+.... +++..+. .|...|.++
T Consensus 220 ~~-----Pl~KVi~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----------~p~~v~~-dhvsAV~dV 278 (433)
T KOG0268|consen 220 AS-----PLKKVIL-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----------RPLNVHK-DHVSAVMDV 278 (433)
T ss_pred CC-----ccceeee-----eccccceecCccccceeeccccccceehhhhhhc----------ccchhhc-ccceeEEEe
Confidence 42 1222221 2334679999988889999999999999875221 1222222 367789999
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.|+|-| .+++|+.|+++++|........ ........ ..|.++.|+.+.+ +++|||+|+.||+|.-
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SR-----diYhtkRM---q~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSR-----DIYHTKRM---QHVFCVKYSMDSK-YIISGSDDGNVRLWKA 344 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcch-----hhhhHhhh---heeeEEEEecccc-EEEecCCCcceeeeec
Confidence 999977 5999999999999966543211 11111111 2388999999876 5779999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=180.44 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=156.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee--eeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE--CVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~--~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++.|.++++.|.|-+|++||.|-.+++||..+-+-. ....+.. -...|++++|++.|..|+..+..-.++|+|=..
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 6788999999999999999999999999997653311 1112222 234688999999999988888778889988432
Q ss_pred CCeeEE---------eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 79 GNEFEC---------VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 79 ~~~~~~---------~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
....++ +...++|...++|.+|||... .+++++.|+++++|+++...... +.+.+ ....+.+-.++.
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-qVik~--k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-QVIKT--KPAGGKRVPVTS 322 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-eEEee--ccCCCcccCcee
Confidence 222222 245679999999999999765 79999999999999988653211 11111 112244567889
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc--ceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR--TIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
++|++++..+|+|+.||.|++|+..... .++...+...|.. .|.|+.|+++| +|++-+.|+++++|++
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~---------v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRT---------VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcc---------cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 9999999999999999999999863211 1222233334544 89999999987 6888999999999986
Q ss_pred c
Q 023500 226 S 226 (281)
Q Consensus 226 ~ 226 (281)
.
T Consensus 394 r 394 (641)
T KOG0772|consen 394 R 394 (641)
T ss_pred c
Confidence 5
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=174.45 Aligned_cols=216 Identities=20% Similarity=0.394 Sum_probs=165.4
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC------------C--e-eEEeEeecCCccceeEEEecCCC
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG------------N--E-FECVSVLQGHAQDVKMVQWHPTM 104 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~------------~--~-~~~~~~~~~~~~~v~~v~~~p~~ 104 (281)
...+..|+.++.+.+|+|||.++++||.|.+|++.|+... + . -..++++..|.+.|+++.|||..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3456789999999999999999999999999999998621 0 0 13467888999999999999999
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 184 (281)
..|++++.|++||++|+....- ++....++ ...+|.++.|+|.|++|+.|..-..+++||++..+....-+.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q-----d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP- 256 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--KRAFKVFQ-----DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP- 256 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--HHHHHHhh-----ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc-
Confidence 9999999999999999876421 11111222 246789999999999999999999999999986553222111
Q ss_pred ccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCC-CCeeEEEEcCCCCee
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD-MDVNSVQWSPGERRL 262 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~ 262 (281)
...|...|+++.+++.+ ++++++.||.+++|+- ... +........|. ..|.++.|..+++ +
T Consensus 257 --------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG-----VS~---rCv~t~~~AH~gsevcSa~Ftkn~k-y 319 (430)
T KOG0640|consen 257 --------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG-----VSN---RCVRTIGNAHGGSEVCSAVFTKNGK-Y 319 (430)
T ss_pred --------ccccccceeEEEecCCccEEEEeccCCcEEeecc-----ccH---HHHHHHHhhcCCceeeeEEEccCCe-E
Confidence 11367889999999865 7889999999999943 111 22222344563 4688899998876 4
Q ss_pred EEEeCCCCeEEEEEcccC
Q 023500 263 LASASDDGMIKIWELANT 280 (281)
Q Consensus 263 ~~s~~~Dg~v~iw~~~~~ 280 (281)
+++.|-|..+++|++...
T Consensus 320 iLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTG 337 (430)
T ss_pred EeecCCcceeeeeeecCC
Confidence 679999999999998754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=182.09 Aligned_cols=245 Identities=20% Similarity=0.339 Sum_probs=190.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+..+.|-++...|++|+.|..|++|+...++.+...++.|..++|+.++|.++++++++++.|+++++|++...+
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r- 252 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR- 252 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh-
Confidence 7788999999999999999999999999998887766788899999999999999999999999999999999996554
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...++.+|.+.|+++.|......+++|+.|.+||+||+... .|..++.. ...+..+..+ ...+++|
T Consensus 253 --~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-----~C~kt~l~-----~S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 253 --LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-----YCSKTVLP-----GSQCNDIVCS--ISDVISG 318 (459)
T ss_pred --hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-----heeccccc-----cccccceEec--ceeeeec
Confidence 35678999999999999988777999999999999977653 45555542 2445555554 3468889
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
-.|++|++||....... ... ...+.|.++..+.++ .+++++.|.++.+.+.....+.. .+.
T Consensus 319 H~DkkvRfwD~Rs~~~~-----------~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-----~~s 380 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKT-----------RSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-----TFS 380 (459)
T ss_pred ccccceEEEeccCCcee-----------eEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-----Eee
Confidence 99999999997643211 111 134578889888877 47788899999999765432221 111
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
....--...++.+.|+|++. ++++||.||.|+||++..+
T Consensus 381 A~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred ccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc
Confidence 11111123488999999876 6889999999999998654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=179.43 Aligned_cols=216 Identities=22% Similarity=0.431 Sum_probs=166.6
Q ss_pred CccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w 74 (281)
|++.-..+.|++... .|++|+.|+.|++||..... ..+...+.+|...|..++|+| ....++++++|+.+.+|
T Consensus 176 H~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 176 HEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred ecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence 455566788999655 78899999999999975432 234567889999999999999 56788999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
|++.. +.++.....+|...|+|++|+|.+. +||+||.|++|++||++.... ++.++ .+|...|.++.|+|
T Consensus 256 D~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~----e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 256 DTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTF----EGHEDEVFQVEWSP 326 (422)
T ss_pred EcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----Cceec----cCCCcceEEEEeCC
Confidence 99864 4455677889999999999999755 689999999999999876531 23333 48999999999999
Q ss_pred CC-CEEEEeeCCCcEEEEeCCcccccc--CCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecc
Q 023500 154 KG-DKLVSCSDDLTIKIWGADITRMQS--GDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 154 ~~-~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~ 226 (281)
.. ..|++++.|+.+.+||+.-..-.. .+....-..+...-+.|...|..++|.|.. .+++.+.|+.+++|.+.
T Consensus 327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 75 589999999999999975322111 111011111223345688999999999975 78899999999999665
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=172.79 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=186.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+++...|....++||+.|..+.++|...++ .+..++||...|+.+.|+|+...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhh--hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 567888888887788999999999999876654 478899999999999999999999999999999999975443
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+......|...|+.+..||++.++++++.|++.-+.++++.. ++...... ...-.+++.+|||||-.|.+|..
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-----~lt~vs~~--~s~v~~ts~~fHpDgLifgtgt~ 367 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS-----QLTVVSDE--TSDVEYTSAAFHPDGLIFGTGTP 367 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc-----EEEEEeec--cccceeEEeeEcCCceEEeccCC
Confidence 345667899999999999999999999999999888776642 22222211 11234789999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
||.++|||++... ....+. .|..+|..++|+.+|+ +++++.|+.+++|+.++.... +.+..
T Consensus 368 d~~vkiwdlks~~-----------~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-----kt~~l- 429 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT-----------NVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF-----KTIQL- 429 (506)
T ss_pred CceEEEEEcCCcc-----------ccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc-----ceeec-
Confidence 9999999986432 122333 3899999999999987 566677888999988764322 22211
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.-..+++++.|.+.|++ ++.+|.|=.|++++
T Consensus 430 --~~~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 430 --DEKKEVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred --cccccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 11236999999998875 55667777777665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=184.07 Aligned_cols=228 Identities=22% Similarity=0.369 Sum_probs=177.1
Q ss_pred ccceeE-EEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRS-CAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~-~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...|.+ +++.+ ++-++++|+.|+.+.+|...+. .+..++.||...|.|++...++. ++|||.|.++++|.+.
T Consensus 57 ~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 57 KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--- 130 (745)
T ss_pred cceeeccceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCCcCc-eEecccccceEEecch---
Confidence 344554 67775 4556889999999999987655 46889999999999999887777 9999999999999763
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
++..++.+|...|..+..-|.. .++|||.|.+||+|.-.. ++. ...+|+.-|..+++-+++ .|++
T Consensus 131 --~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~----tf~gHtD~VRgL~vl~~~-~flS 195 (745)
T KOG0301|consen 131 --ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLK----TFSGHTDCVRGLAVLDDS-HFLS 195 (745)
T ss_pred --hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-------hhh----hhccchhheeeeEEecCC-CeEe
Confidence 3456789999999999999987 999999999999994322 222 335899999999998775 6889
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE-eCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|++||.|++|++.... +..+ ..|..-+.+++ ..+++.+++++.|+++++|... .+
T Consensus 196 csNDg~Ir~w~~~ge~------------l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~ 251 (745)
T KOG0301|consen 196 CSNDGSIRLWDLDGEV------------LLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------EC 251 (745)
T ss_pred ecCCceEEEEeccCce------------eeee-eccceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ce
Confidence 9999999999885321 1111 23667788887 6678899999999999999553 11
Q ss_pred eeeccCCCC-CeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDM-DVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~-~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. ..-.|.. .|+++.+-++|. +++|+.||.||||...
T Consensus 252 ~-q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 252 V-QVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVD 288 (745)
T ss_pred E-EEEecCccceEEEEEeeCCC--EEEeccCceEEEEEec
Confidence 1 1112322 588888887765 5689999999999865
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=171.51 Aligned_cols=253 Identities=26% Similarity=0.425 Sum_probs=187.3
Q ss_pred CccceeEEEEcCCCC--EEEEeeCCCcEEEEecCC--------------CceeeeeeecCCCCCeeEEEEcCC-CCEEEE
Q 023500 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVG--------------GDYECVATLEGHENEVKSVSWNAS-GTLLAT 64 (281)
Q Consensus 2 h~~~i~~~~~~~~~~--~l~tg~~d~~i~lw~~~~--------------~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s 64 (281)
|.+.|+.+.-++-++ +.|+=+..|.+.||+... ....++.++.+|.+.=+.++|||- -..|+|
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 567788888887664 556667779999998431 244578899999999999999993 346888
Q ss_pred ecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 65 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 65 ~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
|.--+.|.+|....+.-......+.+|...|..++|+|... .|+|||.|++|+|||+....... ++ . .++|.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~---~--~kAh~ 302 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AV---S--TKAHN 302 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--ee---E--eeccC
Confidence 88888999999876542223355778999999999999865 79999999999999998764222 11 1 15789
Q ss_pred ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEE
Q 023500 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQ 221 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~ 221 (281)
+-|+.+.|+..-.+|++|+.||+++|||++..+.. .++..+ .+|..+|+++.|+| +..+++++.|..+.
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--------~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--------QPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCC--------CcceeE-EeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 99999999988779999999999999998644321 222233 36899999999997 56899999999999
Q ss_pred EEecccCCC------c--CC--ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 222 FFVESKDDL------I--DG--PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 222 ~~~~~~~~~------~--~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
+|++.-+.- . .+ ....+++. .......|..+.|+++-+.++++.+.||.
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccce
Confidence 998753211 0 00 00111222 12234568899999988888888888885
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=160.48 Aligned_cols=239 Identities=18% Similarity=0.271 Sum_probs=178.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|-..|..++.+.|..-|++|+.|..+.+||+++++. +..+.+|.+.|+.++|+.+...+++||.|.++++||.++. .
T Consensus 58 hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv--~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s 134 (307)
T KOG0316|consen 58 HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV--DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-S 134 (307)
T ss_pred CCceeeeccccccccccccCCCCceEEEEEcccCee--eeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-C
Confidence 667899999999999999999999999999999864 6788999999999999999999999999999999998754 3
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+++.++..-.+.|.++.... ..|++||.||+++.|++......+ . --..+|+++.|++++..++.+
T Consensus 135 ~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~G~l~s--------D---y~g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRKGTLSS--------D---YFGHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred CCccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeecceeeh--------h---hcCCcceeEEecCCCCEEEEe
Confidence 456777777777888887754 479999999999999887653211 1 113569999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+++++.|-..++.... ++... ..+..+.|.-...+..+++|+.||.+.+|+.-.. .+..
T Consensus 202 ~l~stlrLlDk~tGklL~s-----YkGhk----n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---------~~~s 263 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKLLKS-----YKGHK----NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---------TQIS 263 (307)
T ss_pred eccceeeecccchhHHHHH-----hcccc----cceeeeeeeecccceeEEeccCCceEEEEEeccc---------eeee
Confidence 9999999998766543211 11100 0122233332234668999999999999966432 1223
Q ss_pred eccCCCCC-eeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDMD-VNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~~-v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
....|... |++++++|.-..++ +++ ++.+..|-
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~-~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFI-TAT-GHGDLFWY 297 (307)
T ss_pred eeccCCceeEEeeecccCcccee-Eec-CCceecee
Confidence 33445555 79999999876544 554 34455553
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=182.24 Aligned_cols=217 Identities=23% Similarity=0.444 Sum_probs=166.5
Q ss_pred eeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEE
Q 023500 39 CVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
.+.++.||+..|.++.|.| .+.+|+++|.|+.|+||++-... .+++++.+|...|..++|++++..++|+|.|+.++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 4678899999999999999 89999999999999999997633 58999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
+||++++. +...+.. ...+.|+.|+|++ ..+++|+.|+.|+-||++.++.... ...|
T Consensus 284 lwDtETG~-----~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------------Yd~h 341 (503)
T KOG0282|consen 284 LWDTETGQ-----VLSRFHL-----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------------YDRH 341 (503)
T ss_pred eeccccce-----EEEEEec-----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH------------HHhh
Confidence 99998763 4444431 3457899999998 7899999999999999986553221 1235
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC------------------C------------------cccee-
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID------------------G------------------PSYKM- 238 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~------------------~------------------~~~~~- 238 (281)
-+.+..+.|-+++ .+++.+.|+++++|......... . +.++.
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 5677888888765 68888999999999654321110 0 00000
Q ss_pred eeeeccCCC--CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHD--MDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..+...+|. +.-..+.|||+|. +|++|..||.+.+||....
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh
Confidence 011234453 2345689999986 6889999999999998653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=174.93 Aligned_cols=237 Identities=20% Similarity=0.372 Sum_probs=175.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+.++|.+++++++..++|+++++|++.... ..+++.||.+.|+++.|......+++|+.|.+|++||++.. .
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~---~ 294 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA---Y 294 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchh--hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh---h
Confidence 569999999999999999999999999987654 46789999999999999888777999999999999999753 3
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
|.+++.. .+.+..|..+ ...++||..|++|++||+.... +..... .+ +.|+++..++++..|++++.
T Consensus 295 C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~----~g-g~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 295 CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-----KTRSVP----LG-GRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred eeccccc-cccccceEec--ceeeeecccccceEEEeccCCc-----eeeEee----cC-cceeeEeeccCCeEEeeecC
Confidence 4443332 2234444444 4578999999999999876653 222222 22 47999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
|.++++.|...... ++..+..++ .......+.|+|++ ++++|+.|+++.+|.+..+.+. +. ..
T Consensus 362 Ddtl~viDlRt~eI---------~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-----~~-l~ 426 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEI---------RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-----KV-LS 426 (459)
T ss_pred CCceeeeecccccE---------EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE-----EE-ec
Confidence 99999999865432 222222221 11225667788875 7889999999999977554221 11 11
Q ss_pred eccCCCC-CeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDM-DVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~-~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+.. .|++++|+|.|.. +++++.++.+.+|.
T Consensus 427 --~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 427 --LSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred --cCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 12222 6999999998876 56888899999993
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=185.07 Aligned_cols=242 Identities=20% Similarity=0.351 Sum_probs=192.9
Q ss_pred CCCEEEEeeCCCcEEEEecCCCce----eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec
Q 023500 14 SGKLLATASFDATTCIWEDVGGDY----ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 89 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~ 89 (281)
.+++|.|||-||.|++|+...... .....++.|..-|+.+....+|+-|+|+|.|-+|++|+..... ..|+.++.
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir 114 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIR 114 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhh
Confidence 567899999999999998644322 2467889999999999999999999999999999999987665 45788899
Q ss_pred CCccceeEEEe-cCCCCeEEEEecCCeEEEEeCCCCCC---CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 90 GHAQDVKMVQW-HPTMDVLFSCSYDNTIKVWWAEDTDS---DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 90 ~~~~~v~~v~~-~p~~~~l~s~s~d~~v~~w~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.|.+.|.|+++ -++..+++||+-|+.|++||++.... ..+.. .+......|+...|.+++.++.+..+++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-cccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 99999999999 77788999999999999999986521 00000 111122237889999999999999999999999
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
.+++||.+..+. ...+. .|..-|..+-.+++| .++++++|+++++|++..+ +++....
T Consensus 194 ~lr~wDprt~~k-----------imkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~ 252 (735)
T KOG0308|consen 194 DLRLWDPRTCKK-----------IMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYI 252 (735)
T ss_pred ceEEeccccccc-----------eeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEE
Confidence 999999875431 22222 588889999888887 6999999999999987643 2344466
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.|+..|+++.-+|.=. .+.+|+.||.|..=|+++
T Consensus 253 vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eccCceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 7988899999998544 567999999998877776
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=167.63 Aligned_cols=249 Identities=30% Similarity=0.473 Sum_probs=192.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEe------cCC--------C-----------------------c-eeeeeee
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE------DVG--------G-----------------------D-YECVATL 43 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~------~~~--------~-----------------------~-~~~~~~~ 43 (281)
|.+.|++++|++++.+++|++.|++..||. ... + . -.++..+
T Consensus 189 H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l 268 (481)
T KOG0300|consen 189 HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL 268 (481)
T ss_pred cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee
Confidence 789999999999999999999999999996 100 0 0 1135577
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
.+|...|.+..|-..|++++++|.|++..+||+..+. .+..+.+|....+-++-||+..++++.|.|.+.++||+..
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCc---eeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence 8999999999999999999999999999999997664 5778899999999999999999999999999999998863
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
. ++.... ..||+..|+++.|..+ +.+++|+.|.+|++||++.-. .++.++ ..+.++..+
T Consensus 346 a-------I~sV~V-FQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----------splATI--RtdS~~NRv 404 (481)
T KOG0300|consen 346 A-------IQSVAV-FQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----------SPLATI--RTDSPANRV 404 (481)
T ss_pred h-------cceeee-ecccccceeEEEEecC-CceeecCCCceEEEeeecccc----------Ccceee--ecCCcccee
Confidence 2 222221 2389999999999866 478999999999999875211 112121 135566666
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC--CeeEEEeCCCCeEEEEEcccC
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..+..+ +++.-..+..+++|+.+...+..-+ .....+|...|.|++|...- .+ |.+|+-|..+.=|++..+
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP-----rtsRqgHrRMV~c~AW~eehp~cn-LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP-----RTSRQGHRRMVTCCAWLEEHPACN-LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccccCC-----cccccccceeeeeeeccccCcccc-cccccccceeeeeEeccc
Confidence 666665 5666667889999988765332211 22346899999999998532 23 458999999999998765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=152.41 Aligned_cols=251 Identities=22% Similarity=0.294 Sum_probs=172.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEec---CC----------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWED---VG----------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~---~~----------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
..|..++|+|.|.+.|.|++..+.+|-.. .. ......+.-+.|.+.|+|.+|+|+|.+|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 46889999999999999999999887531 11 111112333568899999999999999999999999
Q ss_pred EEEEEecCCCe--eEEeEeecCCccceeEEEecCC----CCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 71 VWIWEVMPGNE--FECVSVLQGHAQDVKMVQWHPT----MDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 71 v~~w~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~----~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
|++-.+..... ...-..+.-|...|+.++|-.+ +.++++++ .|..|++=|..... .+ ....+|+
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--------~~-~a~sght 183 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--------GF-HALSGHT 183 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--------cc-eeecCCc
Confidence 99987754321 1112234568889999998643 33555543 44566555544331 11 2235888
Q ss_pred ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEE
Q 023500 144 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQF 222 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~ 222 (281)
+.+.++ ++=++-++++|+.|.+|++||++........+. -..-.+.....|.+++.+|.|. +++|-.|.+..+
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-----~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-----DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccC-----cccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 888654 344577999999999999999864321110000 0000011235678889999885 667778999999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+++.+ +.+.....|+..|+++.|+|.. .++++|+.|..|++=|+.-
T Consensus 258 ydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 258 YDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence 988764 2244567899999999999965 5678999999999988753
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=161.68 Aligned_cols=210 Identities=27% Similarity=0.539 Sum_probs=165.8
Q ss_pred CccceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~ 77 (281)
|.++|+.++|.. .|.+||++++||.+.||...++++........|...|++|+|.|. |..|+.++.||+|.+.+..
T Consensus 55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~ 134 (299)
T KOG1332|consen 55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD 134 (299)
T ss_pred CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence 889999999988 899999999999999999888887777888899999999999884 6789999999999999998
Q ss_pred CCCeeEEeEeecCCccceeEEEecCC---C-----------CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPT---M-----------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~---~-----------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
............+|.-.|++++|.|. + ..|++|+.|+.|+||+.+.. .|+...+ ..+|.
T Consensus 135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---~w~~e~~----l~~H~ 207 (299)
T KOG1332|consen 135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---SWKLERT----LEGHK 207 (299)
T ss_pred CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc---chhhhhh----hhhcc
Confidence 76444455667899999999999996 3 35999999999999977653 3433333 35899
Q ss_pred ccEEEEEEccCC----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCC
Q 023500 144 STIWALSFNAKG----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD 218 (281)
Q Consensus 144 ~~v~~~~~~~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~ 218 (281)
.-|..++|.|.- .++++|+.||++-||-.+.. ...|+.. ........+..++|+..| +|+.++.|+
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-------~e~wk~t--ll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-------YEPWKKT--LLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-------cCccccc--ccccCCcceEEEEEeccccEEEEecCCc
Confidence 999999999963 47999999999999965421 1112211 111135678899999876 566667788
Q ss_pred cEEEEeccc
Q 023500 219 SVQFFVESK 227 (281)
Q Consensus 219 ~~~~~~~~~ 227 (281)
.+.+|....
T Consensus 279 kvtlwke~~ 287 (299)
T KOG1332|consen 279 KVTLWKENV 287 (299)
T ss_pred EEEEEEeCC
Confidence 899996543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=176.27 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=158.6
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe----eEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
..+.+|+..|.++++.|.|-+++|||.|.+|++||++.... +..+.. +-...|++++|+|++..|+..+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence 45678999999999999999999999999999999974332 111222 224468999999999999999999999
Q ss_pred EEEeCCCCCCCCceee------eeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCccccee
Q 023500 117 KVWWAEDTDSDNWHCV------QTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 189 (281)
+|+|-..... .++. ..+ ...+||.+.++|.+|+|.. ..++||+.||++|+|++...+.+.. .+
T Consensus 239 kl~DRdG~~~--~e~~KGDQYI~Dm-~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q-------Vi 308 (641)
T KOG0772|consen 239 KLLDRDGFEI--VEFSKGDQYIRDM-YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ-------VI 308 (641)
T ss_pred eEEccCCcee--eeeeccchhhhhh-hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee-------EE
Confidence 9986432210 0011 111 1125899999999999975 4799999999999998763321110 01
Q ss_pred E-EeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCC--CeeEEEEcCCCCeeEEE
Q 023500 190 C-TISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM--DVNSVQWSPGERRLLAS 265 (281)
Q Consensus 190 ~-~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~s 265 (281)
. ...+...-++.++.|++++ .+|+|+.||++++|+...... .+ .+....+|.. .|++|+|+++|. +|+|
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v--~p----~~~vk~AH~~g~~Itsi~FS~dg~-~LlS 381 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV--RP----VMKVKDAHLPGQDITSISFSYDGN-YLLS 381 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc--cc----ceEeeeccCCCCceeEEEeccccc-hhhh
Confidence 0 0111223467889999987 578888999999997643211 11 2233456766 899999999986 5779
Q ss_pred eCCCCeEEEEEcccC
Q 023500 266 ASDDGMIKIWELANT 280 (281)
Q Consensus 266 ~~~Dg~v~iw~~~~~ 280 (281)
-|.|+++++||+++.
T Consensus 382 Rg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCCCceeeeecccc
Confidence 999999999999864
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=156.58 Aligned_cols=214 Identities=14% Similarity=0.270 Sum_probs=156.9
Q ss_pred CCccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc------e----ee---eeeecCCCCCeeEEEEcC-CCCEEEEe
Q 023500 1 MHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD------Y----EC---VATLEGHENEVKSVSWNA-SGTLLATC 65 (281)
Q Consensus 1 ~h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~------~----~~---~~~~~~h~~~v~~v~~~~-~~~~l~s~ 65 (281)
+|.+.|+.+.+.+ .|+++++|+.||.|.+||...-. . .| ...-.+|...|.++.|-| |-..+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999999 68999999999999999975422 1 11 112247888999999999 66788999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC---CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
|.|.+++|||...-++ ...+ .-.+.|.+-+++|- .+++++|..|..|++.|+.+.. +.. ...||
T Consensus 121 SFDhtlKVWDtnTlQ~---a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH----~LsGH 187 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE---AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----FSH----TLSGH 187 (397)
T ss_pred cccceEEEeeccccee---eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----cee----eeccc
Confidence 9999999999865443 2222 23456788888883 5678888888999999887653 222 33599
Q ss_pred cccEEEEEEccCCC-EEEEeeCCCcEEEEeCCcc--ccccCCCCc-ccceeEEeecccCcceEEEEeCCCc-eeeecCCC
Q 023500 143 SSTIWALSFNAKGD-KLVSCSDDLTIKIWGADIT--RMQSGDGYA-SWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217 (281)
Q Consensus 143 ~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d 217 (281)
+..|.++.|+|..+ .|++|+.||.|++||++-. .....+.-. ...+.......|...+..++|+.++ ++++++.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 99999999999876 6899999999999998622 111111000 1112222233578899999999877 58889999
Q ss_pred CcEEEEeccc
Q 023500 218 DSVQFFVESK 227 (281)
Q Consensus 218 ~~~~~~~~~~ 227 (281)
..+++|....
T Consensus 268 ~r~r~wn~~~ 277 (397)
T KOG4283|consen 268 DRIRVWNMES 277 (397)
T ss_pred cceEEeeccc
Confidence 9999996544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=174.38 Aligned_cols=249 Identities=19% Similarity=0.344 Sum_probs=185.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..-+.++|.|+|++|.+++.||.|++|+......+ -.++.-+...|.+++- .+.+|++|+.+++|.++.+..+.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 7788899999999999999999999999987544212 2233336777877764 456999999999999999977654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...+.. -.-++++++++.++.+++.||.|-.|++-+..+... ....++|.++|.++.|+|.+.+||+.
T Consensus 89 ~~iL~R---ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---------~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 89 DTILAR---FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---------EKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred cceeee---eeccceEEEEecCCcEEEeecCceeEEEEeccccch---------heeecccCCceeeeeEcCCCCEEEEE
Confidence 323332 345689999999999999999999999987655421 11235899999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeeccc-CcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+-||.+++|++..+.... .+..+.....+. .+.+...+|+|+ |.++..+.|+.+.+|....... ..
T Consensus 157 s~dG~v~iw~~~~~~~~~-----tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-------~f 224 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSK-----TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-------QF 224 (933)
T ss_pred ecCceEEEEEcccchhhh-----hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee-------he
Confidence 999999999986432211 111111111112 455667899997 7899999999999996654321 11
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....+.|...+..+.|+|.|+ +||+++.||.|-|||+.
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD 262 (933)
T ss_pred eecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecc
Confidence 123344555599999999986 58999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=171.05 Aligned_cols=260 Identities=23% Similarity=0.307 Sum_probs=176.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|..+.|.|-...|++++.|.++++||+.++...-...+.||.+.|.+++|.| +...+++||.||.|.|||+.-..
T Consensus 99 H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 99 HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred ccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 77889999999944578999999999999998876543444789999999999999 56789999999999999986322
Q ss_pred e------------------------eEEeEeecCCccceeE---EEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceee
Q 023500 81 E------------------------FECVSVLQGHAQDVKM---VQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCV 132 (281)
Q Consensus 81 ~------------------------~~~~~~~~~~~~~v~~---v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~ 132 (281)
. .+.+...+++...|.+ +-+.-|..+|++++. |+.|||||+........+..
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 0 0011223455556666 667788889999888 99999999976422111110
Q ss_pred eeeeeccCCc---cccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCC
Q 023500 133 QTISESNNGH---SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSR 207 (281)
Q Consensus 133 ~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 207 (281)
..... ..-| .-.+.++.....|.+|...+.|+.|.+|++...... +...+.+... ..+.+ ..++
T Consensus 259 ~~~~~-~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s---------P~~~~sg~~~~sf~vks-~lSp 327 (720)
T KOG0321|consen 259 RGSDK-YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS---------PVAEFSGKLNSSFYVKS-ELSP 327 (720)
T ss_pred CcccC-ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC---------chhhccCcccceeeeee-ecCC
Confidence 10100 0011 233566777777777766666999999987633211 1111111111 11222 2344
Q ss_pred C-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 208 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 208 ~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ .++++|+.|....+|.+..-.. -.....+|...|+++.|.|....-+++|++|-.++||++.+.
T Consensus 328 d~~~l~SgSsd~~ayiw~vs~~e~--------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 328 DDCSLLSGSSDEQAYIWVVSSPEA--------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCceEeccCCCcceeeeeecCccC--------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 4 4688999999999997754211 122346899999999999965444778899999999998653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=164.93 Aligned_cols=215 Identities=23% Similarity=0.455 Sum_probs=160.1
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceee-eeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYEC-VATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
|...=..++|||-- ..|+||.--+.|.+|.+.++.+.. ...+.+|+..|..++|||. ...|+|||.|++|++||++.
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 66667789999932 246688777899999988876532 2345679999999999995 56899999999999999998
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DK 157 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 157 (281)
+....++.+ ++|...|+.+.|+....+|++|+.||+++|||+..-... +.+.++ +-|+.+|+++.|+|.. ..
T Consensus 290 ~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~f----k~Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 290 GPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATF----KYHKAPITSIEWHPHEDSV 362 (440)
T ss_pred CCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeE----EeccCCeeEEEeccccCce
Confidence 866555554 899999999999999889999999999999998765432 233333 3589999999999954 57
Q ss_pred EEEeeCCCcEEEEeCCcccc------ccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEE
Q 023500 158 LVSCSDDLTIKIWGADITRM------QSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFF 223 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~ 223 (281)
|++++.|..|.+||+.+.+- ....++..+.+...+.......+..+.|++ .|++++.+.||...+.
T Consensus 363 iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 363 IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 88888999999999864332 111222223333333322345677788887 4789998888865544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=182.56 Aligned_cols=230 Identities=23% Similarity=0.424 Sum_probs=181.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.++..-..++.+++|++|..+-||..... .++..+.+|..+|.++.|++....|++|+.+|+|++||+....
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk- 103 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK- 103 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-
Confidence 5566777777678899999999999999975433 3456789999999999999999999999999999999997443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.++++.+|...+.+|.|||-+.+.++|+.|+.+++||+.... |... ..+|...|..++|+|+|.+++.+
T Consensus 104 --~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~----~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 104 --IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHT----YKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred --hhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceee----ecCCcceeEEEeecCCCceeecc
Confidence 367889999999999999999999999999999999876543 2222 24688999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|..+++||..-++.. ..+ ..|+..+.++.++|.. +++.|+.|+.+++|+...- ..+
T Consensus 173 ~ed~tvki~d~~agk~~-----------~ef-~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---------e~I 231 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLS-----------KEF-KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---------EVI 231 (825)
T ss_pred CCcceeeeecccccccc-----------ccc-ccccccccccccCchhhhhccCCCCceeeeecccee---------EEe
Confidence 99999999987533321 111 1366778888888854 5778899999999976531 223
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
.........|.+.+|+|++. .+.+|-
T Consensus 232 ~s~~~~~~~v~~~~fn~~~~-~~~~G~ 257 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFNPDGK-IVLSGE 257 (825)
T ss_pred eccCCccCCceeeeecCCce-eeecCc
Confidence 33344467899999999876 354554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=156.97 Aligned_cols=117 Identities=23% Similarity=0.495 Sum_probs=102.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|+++.|+.+|.+||||+.+|.+.||+..++.... .+.+-...+--+.|+|.++.|++|+.||.+.+|.+.+..
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~- 181 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA- 181 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--EeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-
Confidence 88999999999999999999999999999987765433 333445677889999999999999999999999997542
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
..+++.+|...+++-.|.|+|+.++++..|++|++|+..+
T Consensus 182 --~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 182 --LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred --eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 3567889999999999999999999999999999998754
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=164.02 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=175.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-----
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP----- 78 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~----- 78 (281)
++|.+++-+|.|.+|+.|...++|.+|...++. .+..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 568999999999999988899999999998885 4667789999999999999999999999999999998742
Q ss_pred -CCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 79 -GNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 79 -~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.....+...+..|.-.|+.+...+. ...++|+|.|.++++|++.... .+.++. .+..+.+++.+|.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-----LLlti~-----fp~si~av~lDpae 229 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-----LLLTIT-----FPSSIKAVALDPAE 229 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-----eeEEEe-----cCCcceeEEEcccc
Confidence 2234567788999999999887665 4589999999999999987652 223332 35778999999999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccC----CCC-cccceeEEeecccC--cceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSG----DGY-ASWRHLCTISGYHD--RTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~----~~~-~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+.++.|+.+|.|-+.++.....+.. ... ........+.+ |. ..|.|++.+-+| .+++|+.||.+.+|++..
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 9999999999988775432211111 000 11122222333 44 489999999876 688899999999997753
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 260 (281)
+++++......++|+.+.+.|-.+
T Consensus 309 ---------~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 309 ---------KQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ---------HHHHHHHhhhccccceeEeecccc
Confidence 222332222457788888866443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=168.65 Aligned_cols=259 Identities=24% Similarity=0.449 Sum_probs=197.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--cee---eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYE---CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+-|..+.|+|.+..|++++.|+++.+|.+.+. -+. .+..+.|..+..+...|+|+++.+++-|..|-.++|..
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 8899999999999988999999999999987654 222 34445566677899999999999999999999999995
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee---------------------
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI--------------------- 135 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~--------------------- 135 (281)
+....+.....+.||.+.|+.+.|+|.+.+|+++|.|-+-|++..-. +...|+.+.+.
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc-cccceeeecccccccccceeeehccCCceeee
Confidence 55555556667889999999999999999999999999988874320 00000000000
Q ss_pred -----------------------------------------------------------------ee-------------
Q 023500 136 -----------------------------------------------------------------SE------------- 137 (281)
Q Consensus 136 -----------------------------------------------------------------~~------------- 137 (281)
+.
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 00
Q ss_pred ---------------ccCCccccEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCcccceeEEeecccC
Q 023500 138 ---------------SNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISGYHD 197 (281)
Q Consensus 138 ---------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
...||...|++++.+|+++++++++... -|++|++.. |.....+ .+|.
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-----------W~~~~~L-~~Hs 572 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-----------WLQVQEL-EGHS 572 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----------hhhhhee-cccc
Confidence 0127888899999999999999998664 577887642 2222222 2588
Q ss_pred cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 198 ~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+|+.+.|+|++ ++++.+.|+...+|....+.... ..+...+.|..-|+++.|+|++.+ |+|+|.|..|++|.
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWE 646 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCcccce-eEEecCCceEEEEe
Confidence 999999999987 68899999999999775432211 113346789999999999999875 89999999999998
Q ss_pred ccc
Q 023500 277 LAN 279 (281)
Q Consensus 277 ~~~ 279 (281)
...
T Consensus 647 ~~~ 649 (764)
T KOG1063|consen 647 EPD 649 (764)
T ss_pred ccC
Confidence 764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=155.48 Aligned_cols=253 Identities=21% Similarity=0.348 Sum_probs=174.4
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC---CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~~w~~~ 77 (281)
|...|..+-|.| |.-+|.+++.|+.+++||.++.+. ...|+ -++.|++-+++|- ..++|+|-.|-.|++.|+.
T Consensus 100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~--a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE--AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ceeeeeeeEEeeecCceeecccccceEEEeeccccee--eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 777899999999 667899999999999999887654 33333 4578888899984 3467777788899999998
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCC-------CCceeeeeeeeccCCccccEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDS-------DNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~-------~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
.+. +..++.+|...|-+|.|+|...+ |++|+.||.|++||+..... ...+..+ ..+...+|.+.|+.+
T Consensus 177 SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p-~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 177 SGS---FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP-ILKTNTAHYGKVNGL 252 (397)
T ss_pred CCc---ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc-cccccccccceeeee
Confidence 764 56789999999999999999884 78999999999999976411 0101111 112345789999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 229 (281)
+|..++.++++++.|..+++|+...+......-.+.........+.+ ++.-..+.++..-.++.+.++....+
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~~~~s~vfv~~p~~~~lall~~~sg- 325 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH------IQSMDSDVFVLFPNDGSLALLNLLEG- 325 (397)
T ss_pred eecccchhhhhccCccceEEeecccCcccccccccccccccccceEE------EeecccceEEEEecCCeEEEEEccCc-
Confidence 99999999999999999999987644322111111001111111111 11111223333334456666643321
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..+.....|-..|.+..+-|+=+. ..++..|+.+..|.+
T Consensus 326 --------s~ir~l~~h~k~i~c~~~~~~fq~-~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 326 --------SFVRRLSTHLKRINCAAYRPDFEQ-CFTGDMNGNIYMWSP 364 (397)
T ss_pred --------eEEEeeecccceeeEEeecCchhh-hhccccCCccccccc
Confidence 223445677788999999986444 458999999999976
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=154.86 Aligned_cols=199 Identities=18% Similarity=0.328 Sum_probs=157.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|..++|+.|.++|+||+.+..+++||.+..+ -+...+.+|.+.|..+-|....+.|+|+.+|++||+||...+..
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 67889999999999999999999999999987654 34667889999999999988888899999999999999988865
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+ .+.. ...|+++..++++.++.+ +..+.|++|+...-. .+.... -+..|.+..++|+...++.|
T Consensus 178 v~---sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~-----~lKs~k-----~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 178 VQ---SLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG-----LLKSYK-----MPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred EE---EEec-CCCCcceeeccCCCEEEE-ecCceeEEecccccc-----ceeecc-----CccccccccccCCCceEEec
Confidence 33 2322 345899999999877655 567899999775432 122111 23557888999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEeccc
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESK 227 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 227 (281)
+.|..+..||...+. .+..+...|-.+|.|+.|+|+|. +++|+.||++++|....
T Consensus 243 ged~~~~kfDy~Tge-----------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGE-----------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CcceEEEEEeccCCc-----------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 999999999876542 12223345889999999999985 68888999999997654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=161.63 Aligned_cols=235 Identities=21% Similarity=0.369 Sum_probs=170.7
Q ss_pred CCEEEEeeCCCcEEEEecCC-Cceeeee------------------eecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEE
Q 023500 15 GKLLATASFDATTCIWEDVG-GDYECVA------------------TLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIW 74 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~-~~~~~~~------------------~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w 74 (281)
|+++|.|..|..|.|||+.- ....+.. ..++|+..|.+++|+.. .+.|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999531 1111111 12379999999999885 4579999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
|+..++ |..++..|...|.++.|+|. ..+|++||.|++|.+.|.......... . ...+.|-.+.|+|
T Consensus 272 D~~~g~---p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~----w-----k~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 272 DVDTGK---PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE----W-----KFDGEVEKVAWDP 339 (463)
T ss_pred EcCCCC---cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce----E-----EeccceEEEEecC
Confidence 997765 46667779999999999996 458999999999999998754322211 1 1235678899998
Q ss_pred CCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCC
Q 023500 154 KGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 154 ~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~ 230 (281)
... .++++..||+++-+|++... .++.+.. .|+.+|.+++++. .+++++++.|+.+.+|.......
T Consensus 340 ~se~~f~~~tddG~v~~~D~R~~~----------~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 340 HSENSFFVSTDDGTVYYFDIRNPG----------KPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CCceeEEEecCCceEEeeecCCCC----------CceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 654 67778899999999876321 1222222 4888999988876 57899999999999997754322
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.. .....+. -+...|.++.|+-..+++.||..+.++|||+..
T Consensus 409 ~~--v~~~~~~-----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 409 KS--VKEHSFK-----LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cc--ccccccc-----ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 11 0000010 122566788888778899999999999999754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=174.16 Aligned_cols=248 Identities=21% Similarity=0.362 Sum_probs=190.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-C--CCEEEEecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-S--GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~--~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
..+++++.+|+|++||+|.--|+|++|+....+ ....+++|+.+|.|+.|+. . -++|+++|.|+-|.|+|+. +
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--r 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK--R 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc--c
Confidence 358999999999999999999999999986554 3457789999999999975 2 3578999999999999985 4
Q ss_pred eeEEeEeecCCccceeEEEecCCC--CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
++..+.++.+|...|++|+|--.+ ...++++.|..|.+ +............+..+. .+ ...+..++..|..+++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t--~~-ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQT--LS-KTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccc--cc-cceEEEeeeCCCcceE
Confidence 556678889999999999998776 46889999988755 333221111111111100 11 2457889999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
++++.|..|+||++..+++ ...+++ .++.....+..+|.| ++++.++|+++.+++...+
T Consensus 612 ~t~cQDrnirif~i~sgKq-----------~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------- 673 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQ-----------VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------- 673 (1080)
T ss_pred EEEecccceEEEeccccce-----------eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-------
Confidence 9999999999999876543 223333 355677888889987 5677789999999977543
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.++....+|.+.|+.+.|.++=+. |++.+.||.|.||.+..+
T Consensus 674 --EcvA~m~GHsE~VTG~kF~nDCkH-lISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 --ECVAQMTGHSEAVTGVKFLNDCKH-LISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred --hhhhhhcCcchheeeeeecccchh-heeecCCceEEEEECchh
Confidence 356667799999999999998765 569999999999998653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=161.89 Aligned_cols=246 Identities=19% Similarity=0.266 Sum_probs=173.9
Q ss_pred CEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 16 KLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 16 ~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
.+++++... ..|.+|........ . ..---.++|.|++-+|+|.+++.|.-.+.+.+|.+.++. .+.++.+|...
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~-~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---LL~v~~aHYQ~ 125 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQV-V-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---LLNVLSAHYQS 125 (476)
T ss_pred hheeeecccCccccccccCchhhh-h-hhcccccceeeeecCCCceEEEeecccCcEEEEEecccc---HHHHHHhhccc
Confidence 355555544 36778876543321 1 111235789999999999999999999999999998775 35677899999
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeC
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~ 172 (281)
|+|+.|+.++.+|+|||.||.|.+|.+.+.-................|+-+|+.+...+. ..+|+|.+.|.++++||+
T Consensus 126 ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred eeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 999999999999999999999999976532111110011111223478999998887654 468999999999999998
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC-----c--CCccceeeeeecc
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL-----I--DGPSYKMLLKKEK 244 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~ 244 (281)
..+.. +.+ ...+.++.++..+|.. .+..|+.+|.+.+........ . .............
T Consensus 206 S~g~L-----------Llt--i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~ 272 (476)
T KOG0646|consen 206 SLGVL-----------LLT--ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV 272 (476)
T ss_pred cccee-----------eEE--EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec
Confidence 65421 112 2356788888888854 678889999887765432110 0 0011122234456
Q ss_pred CCCC--CeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 245 AHDM--DVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 245 ~h~~--~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+|.. +|+|++.+.++. +|++|+.||.|+|||+.+.
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence 7877 999999999885 7899999999999998753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=150.81 Aligned_cols=257 Identities=24% Similarity=0.427 Sum_probs=180.6
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCC-------cEEEEecCCC-------ceeeeeeec-CCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDA-------TTCIWEDVGG-------DYECVATLE-GHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~-------~i~lw~~~~~-------~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|.+.|+.++-+| +.++|+|+-+|. .+.||..... ..+++..+. .+.+.|.|+.|.|++..+++.
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 457899999999 667888886642 3679975321 234555554 677899999999999999887
Q ss_pred cCCCcEEEEEecCCCeeEE---eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 66 GRDKSVWIWEVMPGNEFEC---VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
. |..|.+|++..+.+... ...-.+|....++-+|+|..+ ..+....|+++..||+.+.. +...+ ..+
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~-----~~~sI---~dA 212 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK-----KNNSI---EDA 212 (370)
T ss_pred c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh-----hhcch---hhh
Confidence 6 78999999976654211 011123566788899999433 34444568999999987532 11222 247
Q ss_pred ccccEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCC
Q 023500 142 HSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADD 218 (281)
Q Consensus 142 h~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~ 218 (281)
|...|..++|+|+.+ +|++|+.||.|++||.+..+.. +.... .|...+.++.|.+ +.+++++++|.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p----------v~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP----------VQELP-GHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc----------ccccC-CCceEEEEEEecCccceEEEecCCCc
Confidence 888899999999865 7999999999999998744321 11122 3677899999887 45799999999
Q ss_pred cEEEEecccCC----------CcC----------CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 219 SVQFFVESKDD----------LID----------GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 219 ~~~~~~~~~~~----------~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+.++...... ..+ .+...-.+.....|+..|.+++|+..++.+||+-+.||.+.|=.+.
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99888543211 000 0111112334567999999999999999999999999999875544
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=160.75 Aligned_cols=209 Identities=21% Similarity=0.413 Sum_probs=164.1
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
..+.+..|+.+|+-+.||++|++|||++.|.+.-+|.+......+...++.+|...|..+.|+|+..++++|+.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 35677889999999999999999999999999999999877777778899999999999999999999999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
||+..++. ... ...+|...+.+.+|.||+..+++|+.|+.+..||.+..- ...|+.. ...
T Consensus 296 wDv~tgd~-----~~~---y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------~~~W~gv------r~~ 355 (519)
T KOG0293|consen 296 WDVDTGDL-----RHL---YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------LGNWEGV------RDP 355 (519)
T ss_pred ccCCcchh-----hhh---cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------hhccccc------ccc
Confidence 99887642 111 223456788999999999999999999999999987321 1123322 235
Q ss_pred ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 199 ~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.|.+++.+++| .+++.+.|..++++..... .. .. ...-..+|++...+.+++ +++..-.+..+++||+
T Consensus 356 ~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-----~d----r~-lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVTVDKKIRLYNREAR-----VD----RG-LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDL 424 (519)
T ss_pred eeEEEEEcCCCcEEEEEecccceeeechhhh-----hh----hc-cccccCceeEEEEcCCCc-EEEEEcccCeeEEeec
Confidence 67788888876 5667779999999954321 00 10 112245799999999886 4556667999999998
Q ss_pred c
Q 023500 278 A 278 (281)
Q Consensus 278 ~ 278 (281)
.
T Consensus 425 ~ 425 (519)
T KOG0293|consen 425 E 425 (519)
T ss_pred c
Confidence 6
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=150.85 Aligned_cols=213 Identities=27% Similarity=0.460 Sum_probs=158.0
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEe
Q 023500 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~ 120 (281)
.+.+|...|.+|+|+.+|..|++|+.|+++++|++...+ ........+|.+.|..++|+|. .+.+++++.|.+|++||
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456899999999999999999999999999999997553 1223456789988999999885 45899999999999999
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCC-----------------
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY----------------- 183 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~----------------- 183 (281)
+... ++...+.. +..-.-+.|+|++++++.+..|..|.+.|.+..++......
T Consensus 94 ~r~~-----k~~~~i~~-----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 94 IRSG-----KCTARIET-----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred eccC-----cEEEEeec-----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 8765 34444432 12234589999999999999999999998764433211111
Q ss_pred -------------cccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCC
Q 023500 184 -------------ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249 (281)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 249 (281)
++++++..+. .|.....||+++|.| ++++|+.|-.+.+|++..- .+.....-++-+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRldwp 233 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRLDWP 233 (313)
T ss_pred EecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccccCc
Confidence 1222222332 356667789999987 6889999999999977531 112223347789
Q ss_pred eeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 250 VNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 250 v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|+.++|+.+|+ +||++|+|-.|-|=+
T Consensus 234 VRTlSFS~dg~-~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 234 VRTLSFSHDGR-MLASASEDHFIDIAE 259 (313)
T ss_pred eEEEEeccCcc-eeeccCccceEEeEe
Confidence 99999999875 799999998875543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=175.84 Aligned_cols=196 Identities=19% Similarity=0.402 Sum_probs=150.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|+++.|++.- .+|++||.||.|++||....+. ..++.+..+.|..|+|+| .+..++++.+.|.+++||++..
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 88999999999954 6889999999999999866542 446667889999999999 5788999999999999999865
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 158 (281)
. .+...+.+|.+.|.|+.|||+..+||||+.|++|+||+...........+.+ .++|.++.|.|+.. +|
T Consensus 210 ~--r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--------iapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 210 D--RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--------IAPVGRVKWRPARSYHL 279 (839)
T ss_pred h--hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--------cceeeeeeeccCccchh
Confidence 5 3556788999999999999999999999999999999987654332222222 36789999999765 68
Q ss_pred EEee--CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcE
Q 023500 159 VSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSV 220 (281)
Q Consensus 159 ~s~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~ 220 (281)
++|+ .|-.|++||+.-.+. +...+. .|+..+..+.|.. ...+.+++.|+.+
T Consensus 280 Atcsmv~dtsV~VWDvrRPYI----------P~~t~~-eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDVRRPYI----------PYATFL-EHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred hhhhccccceEEEEeeccccc----------cceeee-ccCccccceeccCCCceeeEeecCccHH
Confidence 8876 577999999862221 112222 3666677777765 3355666666654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=154.06 Aligned_cols=166 Identities=22% Similarity=0.426 Sum_probs=146.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+|+|-+|++|++.+|.+-+.+.+.||...+.+ ++..++++.|+..|++|+|+|..++|++++.|+...||....+..+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 689999999999999999999999999988777 7889999999999999999999999999999999999999778888
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.+.-++..+...+++|.|+|.++.++.||....|.||.++..+ .|--...+ .+.++..|.+++|+|++-+|+.|+
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhi---kkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHI---KKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhh---CCccccceeeeeccCCcceecccc
Confidence 8888888999999999999999999999999999999988653 23222222 234678899999999999999999
Q ss_pred CCCcEEEEeCCc
Q 023500 163 DDLTIKIWGADI 174 (281)
Q Consensus 163 ~d~~i~~w~~~~ 174 (281)
.|+.+++|..-+
T Consensus 166 ~D~k~rVfSayI 177 (361)
T KOG1523|consen 166 TDGKCRVFSAYI 177 (361)
T ss_pred cCcceeEEEEee
Confidence 999999996543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=162.64 Aligned_cols=232 Identities=26% Similarity=0.470 Sum_probs=176.4
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~ 88 (281)
++|+ ..+.+|.|. +..+.+|+..+++...+..+. ...|+++.|+++|.+|+.|-.+|.|.+||..... .+..+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~ 255 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTL 255 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---ccccc
Confidence 4677 445666654 457999998887755555543 7899999999999999999999999999986443 34556
Q ss_pred cC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE
Q 023500 89 QG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167 (281)
Q Consensus 89 ~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 167 (281)
.+ |...|-+++|+ ...+.+|+.|+.|..+|+...... . . ...+|...|..+.|++++.+|++|+.|+.+
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~----~---~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV----V---S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh----h---h-hhhcccceeeeeEECCCCCeeccCCCccce
Confidence 66 99999999999 568999999999999988654311 1 1 245799999999999999999999999999
Q ss_pred EEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecC--CCCcEEEEecccCCCcCCccceeeeeec
Q 023500 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGA--ADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 168 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
.|||.... .+...+. .|...|..++|+| .++||+|+ .|+.+++|+...+.. +...
T Consensus 326 ~Iwd~~~~-----------~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---------i~~v 384 (484)
T KOG0305|consen 326 FIWDGLSP-----------EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---------IDSV 384 (484)
T ss_pred EeccCCCc-----------cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---------eccc
Confidence 99987321 1222222 4788999999997 67888776 699999997754311 1111
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCC-CCeEEEEEccc
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASD-DGMIKIWELAN 279 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~-Dg~v~iw~~~~ 279 (281)
. -...|..+.|++..+.++.+-|. ++.|.||+...
T Consensus 385 d-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 385 D-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred c-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 1 23569999999988777766544 77899999754
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=178.96 Aligned_cols=223 Identities=27% Similarity=0.453 Sum_probs=179.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
-+.+++.+.-+-.+++||.. .+..|...|.++..-..++.+++||.|..+-+|.+.... ++..+.+|..
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~--------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---~i~S~~~hes 71 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR--------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---AITSLTGHES 71 (825)
T ss_pred cccccceeeeeeccccccch--------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc---hhheeeccCC
Confidence 34445555556667788632 334688888898887788999999999999999885333 4566899999
Q ss_pred ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 94 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.|.++.|++...+|++|+.+|+||+||++... .++++ .+|...+.+++|+|-+.++++|+.|..+++||.+
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk-----~vrtL----tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAK-----IVRTL----TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhh-----hhhhh----hccccCcceeeeccceEEeccccccccceehhhh
Confidence 99999999999999999999999999988642 33434 4899999999999999999999999999999987
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
...+ ...+.+ |...+..+.++|+| .++.++.|..+++|+...+ .+...+..|+..+..
T Consensus 143 k~Gc-----------~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 143 KKGC-----------SHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQS 201 (825)
T ss_pred ccCc-----------eeeecC-CcceeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccc
Confidence 3322 223333 78889999999999 6788888999999976543 234556789999999
Q ss_pred EEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 253 VQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+.|+|.+ .++++||.|++|++||+.
T Consensus 202 le~hp~e-~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 202 LEFHPLE-VLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cccCchh-hhhccCCCCceeeeeccc
Confidence 9999965 689999999999999987
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=157.43 Aligned_cols=161 Identities=22% Similarity=0.441 Sum_probs=137.8
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
||.+.|.|+.|+.|..++|+|+.||.|++|...++. |+..+. +|...|+|+.|+.|+..++++|.|.++++.-+.++
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 688999999999999999999999999999988874 676776 89999999999999999999999999999998776
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 158 (281)
+ ++..+++|.+.|+-+.|.+++..++++|.||+|++|+.... .|+.++... +...+|+++..-|. .+.+
T Consensus 339 K---~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-----eC~~Tfk~~--~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 339 K---CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-----ECLSTFKPL--GTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred h---hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-----hhhhhccCC--CCcccceeEEEcCCCCceE
Confidence 4 56778999999999999999999999999999999966543 355555322 34466788877774 4689
Q ss_pred EEeeCCCcEEEEeCC
Q 023500 159 VSCSDDLTIKIWGAD 173 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~ 173 (281)
+.|-+..++.+.++.
T Consensus 409 iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQ 423 (508)
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999888764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=167.52 Aligned_cols=245 Identities=23% Similarity=0.399 Sum_probs=183.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE-cCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+-|+.++..-+|+.|+++|.|.+|++|+.....-.|..++..|++.|.|++. -++...+||||-|+.|++||+..+.
T Consensus 72 HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 72 HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 778889999999999999999999999999866544578888999999999999 7788899999999999999998653
Q ss_pred e-------eEEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 81 E-------FECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 81 ~-------~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+ ......+. ++...|.+++.++.+..+++|+..+.+++||..... .+..+ .||+..|.++..+
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-----kimkL----rGHTdNVr~ll~~ 222 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-----KIMKL----RGHTDNVRVLLVN 222 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc-----ceeee----eccccceEEEEEc
Confidence 2 11122333 788899999999999999999999999999776532 23333 3899999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+||+.+++++.||+|++||+.-. +-+.++ ..|...+.++..+++. .+.+|+.|+.+..-++...
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQ-----------rCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~--- 287 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQ-----------RCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP--- 287 (735)
T ss_pred CCCCeEeecCCCceEEeeecccc-----------ceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEecccCCc---
Confidence 99999999999999999987522 222222 2367778888877764 6889999999888755431
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
....++... +.+|..+..+.....+ =.++.|+.|+=|..
T Consensus 288 ---~~~tlick~---daPv~~l~~~~~~~~~-WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 288 ---AKSTLICKE---DAPVLKLHLHEHDNSV-WVTTTDSSIKRWKL 326 (735)
T ss_pred ---hhheEeecC---CCchhhhhhccccCCc-eeeeccccceecCC
Confidence 111222222 2245555555332222 34666777777764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=148.46 Aligned_cols=221 Identities=25% Similarity=0.532 Sum_probs=156.4
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeEEeEeecCCccceeEEEec-CC-CCeEEEEecCCeEEEEe
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWH-PT-MDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~~~~~~~~~~~~v~~v~~~-p~-~~~l~s~s~d~~v~~w~ 120 (281)
.+|.+-|+|+.|.+.|+++++|+.|.++++||... ...+.+....+.|.+.|..|.|- |. |+.++++|.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999999999999999999999999643 35677888899999999999995 43 78999999999999995
Q ss_pred CCCC--C--CCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEE---
Q 023500 121 AEDT--D--SDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT--- 191 (281)
Q Consensus 121 ~~~~--~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~--- 191 (281)
-... + ...|....++. -.+..|+.+.|.|. |-.|++++.||.+|||+.-. + -++..|....-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~----DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d--p---~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV----DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD--P---MNLSQWTLQHEIQN 160 (361)
T ss_pred ecccccccccceeEEEEEee----cCCcceeEEEecchhcceEEEEeccCcEEEEEecCC--c---cccccchhhhhhhh
Confidence 4211 1 12233333332 23678999999985 56899999999999996420 0 01111111111
Q ss_pred ---eecccCcceEEEEeCCCc----eeeecCCC-----CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 192 ---ISGYHDRTIFSVHWSREG----IIASGAAD-----DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 192 ---~~~~~~~~v~~~~~~~~~----~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
-.+.+..+..|++|.+.. +++.|+.+ +.+.+|...... ...........|..+|++++|.|.-
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----RKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-----ceeeeehhcCCCCCcceeeeecccc
Confidence 112245677889998743 46666554 367777443321 1122334556899999999999963
Q ss_pred ---CeeEEEeCCCCeEEEEEccc
Q 023500 260 ---RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 260 ---~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..++|+++.|| |+||.+..
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEee
Confidence 34799999999 99999873
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-21 Score=157.62 Aligned_cols=248 Identities=23% Similarity=0.295 Sum_probs=183.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..|+++||+.+.+.||.+-.||+|.||++..+-+ +...+.++. ..|..++|. .+.+|+|.+.+|+|.-||+...++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~- 102 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ- 102 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce-
Confidence 5799999999999999999999999999866432 334444444 689999999 567889999999999999976653
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..........|.+++.+|.+..++.|++||.++....+... .+........+++|.++.|+|++..+++|+
T Consensus 103 --~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 103 --KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred --eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-------EEEEeecccccceEEEEEecCCccEEEecc
Confidence 45566777889999999999999999999977776544321 111112223468899999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.||.|++||.....-..-. ..+..........-|.++.+-.++.+++|-+-|.+.+|+...+ .+...
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~----~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---------TLiqS 240 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHII----TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---------TLIQS 240 (691)
T ss_pred cCceEEEEEcCCCceEEEe----eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---------chhhh
Confidence 9999999998643211100 0001111111223456777788999999999999999966443 23445
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
...|...|.+++-.+++.+ +.++|-|+.|.-+..
T Consensus 241 ~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSL 274 (691)
T ss_pred hhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEe
Confidence 5678999999999998665 568888888766553
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=162.33 Aligned_cols=238 Identities=17% Similarity=0.314 Sum_probs=183.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|+.+...|||+-|++|++-.++.|||...........+..-.-..++++.+||.+..+++..||.|.|||+.+..
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--- 542 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--- 542 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---
Confidence 45889999999999999999999999998765443333444333456788999999999999999999999997542
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
.++.+.+|.+.+.|+..++++..|.+|+-|++|+.||+.+.. .+++ --...+|.++.+.|.++.|+.|..
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr--------qlqq--hdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR--------QLQQ--HDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh--------hhhh--hhhhhhheecccCCCccceeeecc
Confidence 478899999999999999999999999999999999886542 1111 123578999999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
++.+.+-.+... .......|+.-|.++.|.+.|. +++.+.|+.+..|....+ -.++ +
T Consensus 613 ns~vevlh~skp-------------~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG--------asiF-q 670 (705)
T KOG0639|consen 613 NSNVEVLHTSKP-------------EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASIF-Q 670 (705)
T ss_pred cCcEEEEecCCc-------------cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc--------ccee-e
Confidence 998887754311 1111234788899999999875 788888999888844321 1111 1
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. .-.+.|+++..+.+++ +|+||+.|....||.+.
T Consensus 671 s-kE~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 671 S-KESSSVLSCDISFDDK-YIVTGSGDKKATVYEVI 704 (705)
T ss_pred c-cccCcceeeeeccCce-EEEecCCCcceEEEEEe
Confidence 1 1246799999999875 68899999988888763
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-21 Score=142.71 Aligned_cols=211 Identities=22% Similarity=0.379 Sum_probs=165.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
.+.||+.+++.+.++.+|.+|++++.|.++.||--.+++ .+.++.+|...|.|+...-+...+++||.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 457899999999999999999999999999999876553 57889999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-----CCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
+... ++.+.. .+.+|..+.|++++.+++.+.. .+.|.++|++....... .-.+...+. .+
T Consensus 82 ~tGk-----~la~~k-----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----s~ep~~kI~-t~ 146 (327)
T KOG0643|consen 82 ETGK-----QLATWK-----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID----SEEPYLKIP-TP 146 (327)
T ss_pred CCCc-----EEEEee-----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc----ccCceEEec-CC
Confidence 8763 333332 3477999999999988777654 35788888753211100 111122222 25
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
+..+...-|++-+ .+++|..|+.+..|+...+ ..+......|+..|+.+.++|+.. ++++++.|.+-++|
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 6778888999854 6889999999999977643 234555677889999999999865 68899999999999
Q ss_pred Eccc
Q 023500 276 ELAN 279 (281)
Q Consensus 276 ~~~~ 279 (281)
|+..
T Consensus 218 D~~t 221 (327)
T KOG0643|consen 218 DVRT 221 (327)
T ss_pred eccc
Confidence 9864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=159.06 Aligned_cols=258 Identities=29% Similarity=0.472 Sum_probs=160.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|++|...|.|..||+|+.||+++||...++. |+.++. ..+.|.||+|+|.+.. +++.+.+..+.+-+-.-+.
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 88999999999999999999999999999998885 566654 5679999999998764 3333333344444321110
Q ss_pred ------------------e---------------eE-EeEeecCCccceeEEEecCCCCeEEEEecCC---eEEEEeCCC
Q 023500 81 ------------------E---------------FE-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN---TIKVWWAED 123 (281)
Q Consensus 81 ------------------~---------------~~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~---~v~~w~~~~ 123 (281)
+ .+ .+...-.|...|+.+.||..|.+|++..-++ .|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 00 0112235777899999999999999887764 677776654
Q ss_pred CCCC-Cceeeee------eeec-------------------------cCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 124 TDSD-NWHCVQT------ISES-------------------------NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 124 ~~~~-~~~~~~~------~~~~-------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
.... +++.... +... .......+..++.+|.|+.|+.|+.|+.+..||
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 3211 1100000 0000 000123345555566666666666666665555
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc-CCCcCCccceeeeeeccCCCCC
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK-DDLIDGPSYKMLLKKEKAHDMD 249 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~ 249 (281)
+++.. ..++. ...|...++++++++.. ++++++.|+.+.+|.-.- .++...+.. .-++...+|...
T Consensus 636 ldlss----kPyk~-------lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli-VPlK~L~gH~~~ 703 (733)
T KOG0650|consen 636 LDLSS----KPYKT-------LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI-VPLKRLRGHEKT 703 (733)
T ss_pred cccCc----chhHH-------hhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce-EeeeeccCceee
Confidence 54321 00000 12366777888888764 788888889999985432 122222221 123445667555
Q ss_pred ----eeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 250 ----VNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 250 ----v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
|.++.|+|..+++| +++.||+||+|
T Consensus 704 ~~~gVLd~~wHP~qpWLf-sAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLF-SAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEE-ecCCCceEEee
Confidence 89999999988754 88889999998
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=159.90 Aligned_cols=243 Identities=21% Similarity=0.333 Sum_probs=183.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-ceeeeeeecC--CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-DYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|-.-|-++.++...+++.||+ -|-|+|||.... ...++..+.. -...|.++.+.|||+-|++||.--++-+||+..
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 555667778998889999987 466999997532 2233444432 345788999999999999999999999999975
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
... .....+......+..++.+|+.++.+++..||.|.|||+.... .++.+ .||+..+.|++.+++|..|
T Consensus 497 pTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~Vrqf----qGhtDGascIdis~dGtkl 566 (705)
T KOG0639|consen 497 PTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----LVRQF----QGHTDGASCIDISKDGTKL 566 (705)
T ss_pred CCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----eeecc----cCCCCCceeEEecCCCcee
Confidence 432 1223344455678899999999999999999999999886532 23334 4899999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
-||+.|.++|.||.+.+....... ....|+++...|.+. ++.|..++.+.+....+.
T Consensus 567 WTGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp--------- 624 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--------- 624 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhhh-------------hhhhheecccCCCccceeeecccCcEEEEecCCc---------
Confidence 999999999999987543221111 245678888888775 666777888777755431
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|++-|.++.|.+-|++ +++.+.|+.+..|....
T Consensus 625 -~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 625 -EKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY 664 (705)
T ss_pred -cceeecccccEEEEEEecccCce-eeecCchhhhhhccCcc
Confidence 12334568999999999999875 67889999999998653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-20 Score=139.16 Aligned_cols=240 Identities=16% Similarity=0.253 Sum_probs=169.3
Q ss_pred cceeEEEEcCCCCEEEEeeC--CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 4 RTVRSCAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~--d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..|..+.|......++.++. |.+|++-+..+++ .+..+.||...|++++.+|-+..++|+|.|++|++||++..+
T Consensus 57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~- 133 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK- 133 (311)
T ss_pred ccccEEEEecCCceEEEccCCCCCceEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-
Confidence 45677788777776666665 8899999888775 478899999999999999999999999999999999997443
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
|...+. ...-..++|.|+|-++|++.....|+++|+..-+.+++.. +.. ..+.....+.+.|+|+|++++.+
T Consensus 134 --cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t---f~i-~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 134 --CQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT---FSI-TDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred --CceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee---Ecc-CCCCccceeeeEEcCCCCEEEEE
Confidence 222221 1223467899999999999988899999988765554422 211 11335678899999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecc--cCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGY--HDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
...+.+.+.|.=.+.. ..++... ......+.+++|++. +++|+.|+++.+|....+ . .
T Consensus 206 T~~s~~~~lDAf~G~~-----------~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-----~---~ 266 (311)
T KOG1446|consen 206 TNASFIYLLDAFDGTV-----------KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-----K---K 266 (311)
T ss_pred eCCCcEEEEEccCCcE-----------eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-----c---E
Confidence 9999999987532221 1111111 111225667888875 667778899999966432 1 1
Q ss_pred eeeeccC-CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 239 LLKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 239 ~~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.....+ +..++.++.|+|.- .+++|+ +..+.+|=.
T Consensus 267 -v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 267 -VAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLP 302 (311)
T ss_pred -eeEecCCCCCCccccccCCce-eeeeec--CceEEEEec
Confidence 122222 77889999999953 345444 667888854
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=151.70 Aligned_cols=162 Identities=24% Similarity=0.405 Sum_probs=134.8
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCC-------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGG-------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.+|..+.|.+... .+|||+.|..|+||..+.+ +.+.+..+..|+..|+++.|+|+|..|+||++++.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5788999999776 9999999999999975432 3445677889999999999999999999999999999998
Q ss_pred ecC-------------CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 76 VMP-------------GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 76 ~~~-------------~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
... .+.+...+++.+|...+..++|+|+++.+++++-|+++++||+.... +......|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~---------l~~~~~dh 164 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ---------LLAILDDH 164 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce---------eEeecccc
Confidence 651 12244567788999999999999999999999999999999987643 22334578
Q ss_pred cccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 143 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
...|+.++|.|.++++++-+.|...+.++...
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeee
Confidence 88999999999999999988888777776543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=143.43 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=167.3
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC--EEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~~w~~~~ 78 (281)
.|.++|.+++|+.||..+++|+-|+.+++||+..++ +..+..|.++|.++.|-+... .|+|||.|++|+.||.+.
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 478999999999999999999999999999998875 345567999999999977655 799999999999999986
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+. .++.- .+.+.+...- ..+++.+..+..|.++.++.....- + .... .-.-++.|++..++.+..
T Consensus 147 ~~pv---~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~-k---~~~S---pLk~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 147 SNPV---ATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF-K---RIES---PLKWQTRCVACFQDKDGF 213 (347)
T ss_pred CCee---eeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh-h---hhcC---cccceeeEEEEEecCCce
Confidence 6542 22221 2234443221 2367788889999999886653211 1 1111 113456788888888888
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.|+-+|.+.+..++...+...-.+...|......+ .-..|.+++|+|. |.+++.++||+..+|+... +
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---------r 283 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---------R 283 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCC-ceEEecceEeecccceEEEecCCceEEEecchh---------h
Confidence 999999999998766432211101111111000000 1245778899985 6899999999999996532 1
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
..++....|..+|+++.|+.+|..+....+.|
T Consensus 284 ~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 284 TKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 22344467899999999999887543345555
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=151.35 Aligned_cols=255 Identities=15% Similarity=0.264 Sum_probs=177.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.|+|..++|++++.|+.++||.+.+..-..++.+.--..+|.+..|.|+|. +++++|.-.-+..||+...+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3679999999999999999999999999876544344555554568999999999998 899999999999999864321
Q ss_pred eE----------EeE-----------eec--------------------CCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 82 FE----------CVS-----------VLQ--------------------GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 82 ~~----------~~~-----------~~~--------------------~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
.+ .+. .+. .-.+.|..++|+.++..|++++.+|.|.+|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 10 000 011 1234677888999999999999999999998
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcce
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 200 (281)
++.. .++.++......|. ++++.++++.+||+|+..|-|.|||.+..-.. .. -+++..+.. ....|
T Consensus 373 l~~~-----~~~~rf~D~G~v~g---ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--~~---PkPik~~dN-Ltt~I 438 (514)
T KOG2055|consen 373 LRQN-----SCLHRFVDDGSVHG---TSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--TN---PKPIKTVDN-LTTAI 438 (514)
T ss_pred cCCc-----ceEEEEeecCccce---eeeeecCCCceEEeccCcceEEEeccchhhcc--CC---CCchhhhhh-hheee
Confidence 8765 35555544332232 56788899999999999999999985421110 00 022222211 24568
Q ss_pred EEEEeCCCceeeecC---CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 201 FSVHWSREGIIASGA---ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+++|+++..+++.+ .+..+++..+....++..-+ ....--..|+|++|+|.+. ++|.|.++|.|.+|.+
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP------~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP------TSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC------CCCCcccceEEEEecCCCc-eEEeecCCCceeeEee
Confidence 899999988654433 35577887665432222111 1112223589999999775 6899999999999987
Q ss_pred c
Q 023500 278 A 278 (281)
Q Consensus 278 ~ 278 (281)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 4
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=143.12 Aligned_cols=250 Identities=18% Similarity=0.281 Sum_probs=164.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
..|+.|++-|.+||.|+.||.+.|||..+.. ....+.+|..+|.+++||++|++|+|+|.|..|.+||+..+....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-- 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-- 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee--
Confidence 6789999999999999999999999987754 456788999999999999999999999999999999998776432
Q ss_pred EeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeC
Q 023500 86 SVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~ 163 (281)
.+. -.+.|..+.|||... ..+++=.+..-.+-++... .+.+.... ..+. .....+..|.+.|+++++|..
T Consensus 102 -rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~----~h~~Lp~d--~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 102 -RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP----KHSVLPKD--DDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred -EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC----ceeeccCC--CccccccccccccccCCCCEEEEecC
Confidence 222 256799999999755 3333333333333333321 11111110 0111 111223358889999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC--Cccceeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID--GPSYKMLL 240 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~ 240 (281)
.|.+.++|....+.. ..+... ....|.++.++.+| .++.-++|+.+|.|..+..+... +..-....
T Consensus 174 KGkllv~~a~t~e~v---------as~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 174 KGKLLVYDAETLECV---------ASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred cceEEEEecchheee---------eeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 999999987643221 111111 13567778888766 57778899999999776322110 00000000
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.......-.-+++.|+.+|.+++++.+.-..++||.-.
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 01122233456788998887766655556679999854
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=147.08 Aligned_cols=235 Identities=20% Similarity=0.394 Sum_probs=175.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC--Ce
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG--NE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--~~ 81 (281)
+.|.|+.|.++|+.+ ||..+|.|.||+..+... .+...+|++.|.++..-.+|.+|- |+.|+.|..||-.-. ++
T Consensus 247 k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRI--SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred eEEEEEEEcCCCCEE-eecCCceEEEEeCCCceE--EeEeeecCCceEEEEEecCccEee-cCccceEEecccccccccc
Confidence 569999999999976 999999999999866543 333348999999999888887665 999999999983210 00
Q ss_pred e------EEe-----------------------------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 82 F------ECV-----------------------------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 82 ~------~~~-----------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
. ..+ .+..+|.+....++.+|+.+++++++.|+.+++|+ +..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k-- 399 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHK-- 399 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCc--
Confidence 0 000 12347888888999999999999999999999996 111
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
-.| .. .-..++.|++|+|.+ .++.|...|..-+.|.+... ..+... .+.++.++.++
T Consensus 400 ~~w------t~---~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~------------lv~~~~-d~~~ls~v~ys 456 (626)
T KOG2106|consen 400 LEW------TK---IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD------------LVTIHT-DNEQLSVVRYS 456 (626)
T ss_pred eeE------EE---EecCceeEeeccCcc-eEEEeeccceEEEEecccce------------eEEEEe-cCCceEEEEEc
Confidence 111 11 113567899999999 99999999999999876421 112222 27889999999
Q ss_pred CCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 207 REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 207 ~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
|+| ++|.|+.|+.+.+|.+..+.. .+.. -.+.|..+|+.+.|+++++ ++.+-+.|-.|..|+
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~----~y~r---~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGR----KYSR---VGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCc----EEEE---eeeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 987 688899999999997765322 1111 1233458999999999886 577999999999994
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=173.20 Aligned_cols=245 Identities=22% Similarity=0.380 Sum_probs=182.0
Q ss_pred eeEEEEcCCCCE----EEEeeCCCcEEEEecCC----CceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEe
Q 023500 6 VRSCAWSPSGKL----LATASFDATTCIWEDVG----GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 6 i~~~~~~~~~~~----l~tg~~d~~i~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~ 76 (281)
-+.++|.+.|.. ||.|.+||+|.+||... .+...+.++.-|++.|..+.|++. +++|++|+.||.|.+||+
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 357899998765 89999999999999643 344557788889999999999996 559999999999999999
Q ss_pred cCCCeeEEeEee--cCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVL--QGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
...+.. ... ....+.|.+++|+..-+ .|++++.+|.+.|||+.... .+..+... +.+..+..+.|+|
T Consensus 147 nn~~tP---~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~ls~~--~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 147 NKPETP---FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKLSDT--PGRMHCSVLAWHP 216 (1049)
T ss_pred CCcCCC---CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-----cccccccC--CCccceeeeeeCC
Confidence 764321 122 22457899999998755 68899999999999987642 23333221 2234578999999
Q ss_pred CC-CEEEEeeCC---CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEeccc
Q 023500 154 KG-DKLVSCSDD---LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESK 227 (281)
Q Consensus 154 ~~-~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 227 (281)
+. +.+++++.| ..|.+||++... .++..+ ..|...|.+++|.+. .++++++.|+.+..|..+.
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~as----------sP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFAS----------SPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccC----------Cchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 86 356666544 489999876321 111122 248889999999974 4789999999999996654
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ +.+........++..+.|+|..+.+|+.++-||.|.|+.+..+
T Consensus 286 g---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 286 G---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred c---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 2 2334444566789999999999888999999999999987653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=156.03 Aligned_cols=254 Identities=21% Similarity=0.400 Sum_probs=191.2
Q ss_pred EEEEcC-CCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC---CEEEEecCCCcEEEEEecCCC-e
Q 023500 8 SCAWSP-SGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 8 ~~~~~~-~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
|+++.| .+. ++|.|+.+..+.|+.....++..+..+.||.+-|.+++|+.-+ .+|+|+|+|..||+|.+.... +
T Consensus 150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 455556 333 5677888889999977767788889999999999999997633 378999999999999986433 0
Q ss_pred e-----------------EEe----------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 82 F-----------------ECV----------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 82 ~-----------------~~~----------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
. ... ..+.||.+-|.++.|+|.+..|+++|.|.++-+|..++ ..+.|....+
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~-~tGiWv~~vR 308 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE-NTGIWVDVVR 308 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC-ccceEEEEEE
Confidence 0 111 12459999999999999999999999999999997654 3345666665
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeee
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 213 (281)
+-... +.....+...|+|++..+++-+..|-+++|..+... .|.+.... ..|...|..+.|+|.| ++++
T Consensus 309 lGe~g-g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~--------~w~~~~~i-SGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 309 LGEVG-GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT--------FWTQEPVI-SGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred eeccc-ccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------ceeecccc-ccccccceeeeecCCCCEEEE
Confidence 54332 334567899999999999999999999999632111 12333233 3588899999999976 6889
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+.|.+.|+|..-.. ..-...+.+.+.|..+++|++|-+. +..|++|++...+|+|+..
T Consensus 379 vs~DQTTRlFa~wg~-----q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 379 VSLDQTTRLFARWGR-----QQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred eccccceeeeccccc-----ccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence 999999999954311 1113456677889999999999884 3457899999999999865
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=157.66 Aligned_cols=256 Identities=23% Similarity=0.322 Sum_probs=171.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEec---C---CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWED---V---GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~---~---~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
|.+.|+.++|+|....|++++.||.|.+|.. . ...++++.++.+|.++|.|+...+.+..+++||.||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 6788999999999999999999999999987 2 245678899999999999999999999999999999999998
Q ss_pred ecCCCe----e---EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 76 VMPGNE----F---ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 76 ~~~~~~----~---~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+..... . .....+.||.+++..+.+|+..+.|+++|.||++++|....... | ++.... . .+....
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~--~f~~~~-e-~g~Pls 444 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----C--TFGEPK-E-HGYPLS 444 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----c--ccCCcc-c-cCCcce
Confidence 763211 1 22356789999999999999999999999999999997654421 1 111111 1 133445
Q ss_pred EEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 149 LSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 149 ~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+++-... ..+++...-+.-.+++.++.......+-....... ........++.....+.+++..|+.+++++...
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~----~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR----RYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc----ccCccceEEecCCCCeeEecccCCceecccccc
Confidence 6654332 22222222222223332221100000000000000 001112223333346788888999999997655
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+ ......|...++++++.|++. +|++++.|+.+++|.+..
T Consensus 521 ~~~---------l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 521 GKI---------LHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccc---------chheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 432 223346788899999999886 578999999999999754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=147.53 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=173.7
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|.+..+.++.+|+.+.++|++.|+.++||+. .+.+..+. -..++.|+.|+|.| .++.|...|.-.+.|.....
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~--~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWND--HKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEccC--CceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 47888999999999999999999999999983 33332332 34788999999999 99999999998888876422
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.+..-.. .+++++++|+|++.+||.||.|+.|++|.+..... ...... +.|.++++.++|++|+++|.+
T Consensus 440 ---lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~----~y~r~~---k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 440 ---LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR----KYSRVG---KCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred ---eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc----EEEEee---eecCceeEEeeecCCCceEEe
Confidence 1222222 77899999999999999999999999998876532 111121 123378999999999999999
Q ss_pred eeCCCcEEEEeCCccccccC-CCCcccce-eEEe-----ecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcC
Q 023500 161 CSDDLTIKIWGADITRMQSG-DGYASWRH-LCTI-----SGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
-+-|-.|.+|.....+.... ... +|.. .|.+ -+.+...+..++-+.+ .++++|...+.+++|...=.
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDv-kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~---- 583 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDV-KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS---- 583 (626)
T ss_pred ccCceEEEEEccccCcccceecce-eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC----
Confidence 99999999994432211111 111 1111 1110 0112222233333333 36777778899999954211
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.......+..+|++.|++++|.-+... +++.+.|..|..|++
T Consensus 584 --s~rA~~he~~ghs~~vt~V~Fl~~d~~-li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 584 --SPRAPSHEYGGHSSHVTNVAFLCKDSH-LISTGKDTSIMQWRL 625 (626)
T ss_pred --CCcccceeeccccceeEEEEEeeCCce-EEecCCCceEEEEEe
Confidence 111223345689999999999987764 556559999999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=148.10 Aligned_cols=256 Identities=18% Similarity=0.290 Sum_probs=172.2
Q ss_pred CCccceeEEEEcCCC--CEEEEeeCCCcEEEEecC--CCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEE
Q 023500 1 MHTRTVRSCAWSPSG--KLLATASFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~--~~l~tg~~d~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~ 75 (281)
+|.+.|++++|+|.- +++|.|..-|+|=+||.. ..+..-+..+.+|..+|.++.|+| +..++++.|.||+|++=|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 467889999999964 589999999999999984 233344677889999999999999 567899999999999998
Q ss_pred ecCCCe-----------eE-----------E--------------------eEeecCCccceeEEEecCCCC-eEEEEec
Q 023500 76 VMPGNE-----------FE-----------C--------------------VSVLQGHAQDVKMVQWHPTMD-VLFSCSY 112 (281)
Q Consensus 76 ~~~~~~-----------~~-----------~--------------------~~~~~~~~~~v~~v~~~p~~~-~l~s~s~ 112 (281)
+..... .- . ...+.-|...|+.++++|... +++|+|.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 853110 00 0 011234777999999999755 6899999
Q ss_pred CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEe
Q 023500 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 192 (281)
Q Consensus 113 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 192 (281)
|.+++|||+........ ..+ ....|+..|.+..|||++-.|++-+.|..|++||..-. .... .+.+.+
T Consensus 344 D~T~kIWD~R~l~~K~s---p~l--st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~~-----~p~~~I 411 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKAS---PFL--STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAKD-----EPLGTI 411 (498)
T ss_pred CcceeeeehhhhcCCCC---cce--ecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--cccC-----Ccccee
Confidence 99999999876432110 111 12369999999999999878999999999999987310 0011 111111
Q ss_pred ec--ccC--cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeee-ccCCCCCeeE-EEEcCCCCeeEEE
Q 023500 193 SG--YHD--RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK-EKAHDMDVNS-VQWSPGERRLLAS 265 (281)
Q Consensus 193 ~~--~~~--~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~-~~~~~~~~~~~~s 265 (281)
.. .+. -+.+...|.|+. +++.|-.-..+-+++.+.+ +.+.+ .......|.+ .+|+|-+..+++.
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~---------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG---------QMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC---------EEeeeccCccccccccceeecccccceecc
Confidence 11 111 233455788754 5666666667777755432 11111 1112223544 4799976545655
Q ss_pred eCCCCeEEEEEc
Q 023500 266 ASDDGMIKIWEL 277 (281)
Q Consensus 266 ~~~Dg~v~iw~~ 277 (281)
++.-|.|.||--
T Consensus 483 ~~s~Gki~vft~ 494 (498)
T KOG4328|consen 483 GNSSGKIYVFTN 494 (498)
T ss_pred CCccceEEEEec
Confidence 666788888853
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=147.38 Aligned_cols=248 Identities=16% Similarity=0.290 Sum_probs=179.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
++.|-.++|++.+++ .+.+.+|.|.-||+.+.+ ....++...+.|++++.+|.+..++.|++||.+..+++.++. .
T Consensus 69 drsIE~L~W~e~~RL-FS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I 144 (691)
T KOG2048|consen 69 DRSIESLAWAEGGRL-FSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-I 144 (691)
T ss_pred CCceeeEEEccCCeE-EeecCCceEEEEecccCc--eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-E
Confidence 367889999965555 488889999999998775 466777788999999999999999999999977777765443 2
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
+..+.+....+.+-+++|+|++..+++|+.||.|++||+........ ....+-...++-+--||++.|-.++ .+++|+
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~-~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD 222 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI-ITMQLDRLSKREPTIVWSVLFLRDS-TIASGD 222 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE-eeecccccccCCceEEEEEEEeecC-cEEEec
Confidence 33455666678999999999999999999999999999876542210 0001111112234567888887554 799999
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
..|+|++||.+.+... .. ...|+..|.++.-.++ ..+.+++-|+.+--|....... . .....
T Consensus 223 S~G~V~FWd~~~gTLi-----------qS-~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~----~-wv~~~ 285 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLI-----------QS-HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS----E-WVINS 285 (691)
T ss_pred CCceEEEEcccCcchh-----------hh-hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc----c-eeeec
Confidence 9999999997644221 11 1237788999988876 6788888888776664433211 1 22233
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
....|...|++++..+. .+.+|+.|..|.+-.
T Consensus 286 ~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN---ALISGGRDFTLAICS 317 (691)
T ss_pred cccCCcccceeeeeecc---eEEecceeeEEEEcc
Confidence 45678889999998764 577999999987644
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=141.29 Aligned_cols=266 Identities=21% Similarity=0.450 Sum_probs=176.6
Q ss_pred CccceeEEEEcCC-----CCEEEEeeCCCcEEEEecCCCc-eeeeeee--cCCCCCeeEEEEcCC----CCEEEEecCCC
Q 023500 2 HTRTVRSCAWSPS-----GKLLATASFDATTCIWEDVGGD-YECVATL--EGHENEVKSVSWNAS----GTLLATCGRDK 69 (281)
Q Consensus 2 h~~~i~~~~~~~~-----~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~--~~h~~~v~~v~~~~~----~~~l~s~~~d~ 69 (281)
|+.+|..++|++- -+.+||.+. +.+.||+....- ...+..+ ..|++..+.++|..+ ..++|.||.-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 6788999999962 246777664 457788754322 1122222 247888999999764 34789999999
Q ss_pred cEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
.|++.|+... ++...+.+|...|+.++++|+. ++++++|.|.+|++|++++. .|+.- .-...+|+..|.+
T Consensus 116 vIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-----~Cv~V-fGG~egHrdeVLS 186 (385)
T KOG1034|consen 116 VIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-----VCVAV-FGGVEGHRDEVLS 186 (385)
T ss_pred EEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-----eEEEE-ecccccccCcEEE
Confidence 9999998654 3567789999999999999975 68999999999999988764 24432 2344689999999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc-------ccc----eeEEe-----ecccCcceEEEEeCCCceee
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA-------SWR----HLCTI-----SGYHDRTIFSVHWSREGIIA 212 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-------~~~----~~~~~-----~~~~~~~v~~~~~~~~~~~~ 212 (281)
++|+++++++++|+.|..+++|++.........+.. +.+ +.+.+ ...|...|.|+.|-. .+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~il 265 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFIL 265 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hhee
Confidence 999999999999999999999988743322111100 000 11111 122444555555544 3566
Q ss_pred ecCCCCcEEEEeccc-CCCcC----CccceeeeeeccCCCCCeeEEEEc--CCCCeeEEEeCCCCeEEEEEccc
Q 023500 213 SGAADDSVQFFVESK-DDLID----GPSYKMLLKKEKAHDMDVNSVQWS--PGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 213 ~~~~d~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+-+-++.+..|.+.+ .+... ...-...+.+...-.-.|+-+.|. |-+ .+||.|..-|.|.+||+.+
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCC
Confidence 667777999997732 11110 011111222333334456666554 433 4688999999999999876
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=138.27 Aligned_cols=201 Identities=16% Similarity=0.368 Sum_probs=146.6
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC--eEEEEecCCe
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNT 115 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~ 115 (281)
.++..+.+|.++|++++. ++.+++|||.|.+|++||++...+ ...+..|.+.|+++.|.|... .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q---lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ---LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh---hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 346678899999999987 579999999999999999975543 556778999999999998765 8999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|-+|+. .+|.++..+ ++|.++|+.++.+|.+++.++.+.|+.++.|++-.++.... +.+ .
T Consensus 109 i~iw~~-----~~W~~~~sl----K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v---------~~L--~ 168 (362)
T KOG0294|consen 109 IIIWRV-----GSWELLKSL----KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV---------LNL--K 168 (362)
T ss_pred EEEEEc-----CCeEEeeee----cccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee---------ecc--C
Confidence 999954 346555544 47999999999999999999999999999998753322111 111 1
Q ss_pred cCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEE
Q 023500 196 HDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~i 274 (281)
+.. ..+.|+|+|. ++.++.+ .+-+|..... ..+..+ .....+.++.|-..+ .+++|++|+.|++
T Consensus 169 ~~a--t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-----~v~~~i-----~~~~r~l~~~~l~~~--~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 169 NKA--TLVSWSPQGDHFVVSGRN-KIDIYQLDNA-----SVFREI-----ENPKRILCATFLDGS--ELLVGGDNEWISL 233 (362)
T ss_pred Ccc--eeeEEcCCCCEEEEEecc-EEEEEecccH-----hHhhhh-----hccccceeeeecCCc--eEEEecCCceEEE
Confidence 122 2378888875 5555554 4566643221 111111 122457788887643 4779999999999
Q ss_pred EEcc
Q 023500 275 WELA 278 (281)
Q Consensus 275 w~~~ 278 (281)
||-.
T Consensus 234 ~D~d 237 (362)
T KOG0294|consen 234 KDTD 237 (362)
T ss_pred eccC
Confidence 9965
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-18 Score=138.34 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=155.2
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~~ 82 (281)
.+..++|+|+|+.+ ++++.++.+.+||..+++. ...+..+.. +..+.|+|+++.++ +++.|+.+++||+....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-- 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK-- 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--
Confidence 36679999999875 6778889999999876643 334443333 46789999998765 45678999999997543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-E
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-S 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s 160 (281)
.+..+.. ...+..+.|+|++..+++++.++ .+.+|+.+... ...... ....+..+.|+|+++.|+ +
T Consensus 107 -~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-----~~~~~~-----~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 107 -VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-----IVDNVL-----VDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred -EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-----EEEEEE-----cCCCccEEEECCCCCEEEEE
Confidence 2333332 23467899999999999888875 45666654321 111111 112356789999998775 5
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeeccc--CcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccc
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH--DRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+..++.+++||.+..+.... +. ......+ ......+.+++++. +++.+.++.+.+|+.... ..
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~-----~~--~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-----~~- 241 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKK-----IT--FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-----EV- 241 (300)
T ss_pred cCCCCEEEEEEcCcceeeee-----ee--ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-----cE-
Confidence 55699999999874432110 00 0000000 11223566787764 445556678999966432 11
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.... .+...+.+++|+|+++.++++++.++.|++||+..
T Consensus 242 ---~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 242 ---LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 1111 23346889999999987665567799999999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=142.66 Aligned_cols=211 Identities=22% Similarity=0.429 Sum_probs=148.1
Q ss_pred eecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC----eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCe
Q 023500 42 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNT 115 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~ 115 (281)
.+.||+++|..++|+| +...|||||.|.+|++|.+.... ..+++..+.+|+..|--+.|||.. +.|+|++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3468999999999999 67889999999999999986432 234567789999999999999985 57899999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|.+|+++... ...++ .|+..|+++.|+.+|.+|++.+.|..||+||...+...... ....
T Consensus 156 v~iWnv~tge-----ali~l-----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~he-- 215 (472)
T KOG0303|consen 156 VSIWNVGTGE-----ALITL-----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHE-- 215 (472)
T ss_pred EEEEeccCCc-----eeeec-----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------cccc--
Confidence 9999988753 12222 39999999999999999999999999999998754432110 0000
Q ss_pred cCcceEEEEeCCCceeeecC----CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 196 HDRTIFSVHWSREGIIASGA----ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
...+...+ |-.++.+++.+ ++..+.+|+... + ..+.. +.... -++.|.-==|.|+..-++++|-.|+.
T Consensus 216 G~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~n--l-~eP~~---~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 216 GAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNN--L-EEPIA---LQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred CCCcceeE-EeccCceeeeccccccccceeccCccc--c-cCcce---eEEec-cCCceEEeeecCCCCEEEEEecCCcc
Confidence 11222222 33344444433 466777785532 1 11211 11122 22335444567777767788888999
Q ss_pred EEEEEcccC
Q 023500 272 IKIWELANT 280 (281)
Q Consensus 272 v~iw~~~~~ 280 (281)
||.|++.+.
T Consensus 288 IRYyEit~d 296 (472)
T KOG0303|consen 288 IRYFEITNE 296 (472)
T ss_pred eEEEEecCC
Confidence 999998764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=138.58 Aligned_cols=259 Identities=20% Similarity=0.383 Sum_probs=174.8
Q ss_pred eeEEEEcCC----CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~----~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
-..++|+=+ ..++|.|+.-|.|+|.|+..++ +.+.+.+|...|+.+.|.|+ .++++++|.|.+||+|+++...
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 445556543 3588999999999999987764 57788999999999999995 6789999999999999997653
Q ss_pred eeEEeEe---ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC-------------Cceeeee----eee--c
Q 023500 81 EFECVSV---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD-------------NWHCVQT----ISE--S 138 (281)
Q Consensus 81 ~~~~~~~---~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~-------------~~~~~~~----~~~--~ 138 (281)
|+.+ +.+|.+.|-++.|++++..|+|++.|.++++|++...+.. ..+...+ +.. .
T Consensus 170 ---Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 170 ---CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred ---EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 5544 4679999999999999999999999999999998732110 0000000 000 1
Q ss_pred cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC-CccccccCCCCcccceeEEeec---ccCcceEEE--EeCC-Ccee
Q 023500 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISG---YHDRTIFSV--HWSR-EGII 211 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~--~~~~-~~~~ 211 (281)
...|+..|-|++|-. +++++=+-++.|..|.. ++.....+.... ...++..+ +..-.+.-+ ++++ ..++
T Consensus 247 ~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~--es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPP--ESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCC--ccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 235788888888865 58888888889999966 322211000000 11111111 112223333 3444 3478
Q ss_pred eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 212 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.|...|.+.+|++...+....+ .+. ...-...|+..+|+.++. +++...+|++|-=||..+
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~t---tl~--~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCT---TLT--HSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCc---eEE--eccccceeeeeeecccCc-EEEEEeCCCcEEEEEeec
Confidence 88999999999988654332111 111 112345689999999886 556677799999998654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=145.81 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=151.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|++.|..++|+..- .+||+||.|.+|++||+.+++ |..++..|.+.|.+++|+| .+..|++||.|++|.+.|++..
T Consensus 242 HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 242 HTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred chHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 77888888888854 589999999999999998885 5778888999999999999 5789999999999999999843
Q ss_pred CeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 157 (281)
........+ .+.|..++|+|... .++++..||+|+-+|++... +++.++ .+|.+.|.++++++.- .+
T Consensus 320 ~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~----~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 320 SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTL----KAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred cccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEE----EeccCCcceEEecCCCCcc
Confidence 221111222 45689999999755 67788899999999887654 233333 4799999999998753 57
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEeccc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~ 227 (281)
|++++.|+++++|++....+..... ..+ .-....|+++.+ .+.++.|+..+.+++|+...
T Consensus 389 l~t~s~d~~Vklw~~~~~~~~~v~~-------~~~---~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDSPKSVKE-------HSF---KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred eeeccccceEEEEeecCCCCccccc-------ccc---cccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 9999999999999886543321110 000 011244555555 36788899999999996643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=138.82 Aligned_cols=207 Identities=19% Similarity=0.329 Sum_probs=151.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|+-.|..+...-.+++|++++.|..|.||+..+. .+.++......-+..+.||+|++|++++..-.|+||.+--.+
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq---~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ---LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecCCc---eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence 4556777888888999999999999999998743 355666666677788899999999999999999999964322
Q ss_pred ----eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC---CCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 81 ----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT---DSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 81 ----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
+...+..+++|.+.|..++|+|+...++++|.||++++||.+-. ..++. .+.....+.....+...-+.++|
T Consensus 263 G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk-~Lk~g~~pl~aag~~p~RL~lsP 341 (420)
T KOG2096|consen 263 GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK-ILKEGSAPLHAAGSEPVRLELSP 341 (420)
T ss_pred cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch-HhhcCCcchhhcCCCceEEEeCC
Confidence 22345678999999999999999999999999999999987521 11111 11111111111123334789999
Q ss_pred CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 154 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 154 ~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
+++.|+... ...+++|..+.++ .+ ..+...|...|.+++|+++|.+++.+.|+.++++.
T Consensus 342 ~g~~lA~s~-gs~l~~~~se~g~-----~~------~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 342 SGDSLAVSF-GSDLKVFASEDGK-----DY------PELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred CCcEEEeec-CCceEEEEcccCc-----cc------hhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 999887654 4469988665322 11 11223478899999999999988888999999884
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-19 Score=149.13 Aligned_cols=265 Identities=19% Similarity=0.268 Sum_probs=189.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.|+.++|..||+ +||+|+..|.+.+||.+..+. .......|.+.|....|-|....+++++.|+++++|-...+. .
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 7899999999997 678888889999999987653 234456899999999999999999999999999999765332 1
Q ss_pred eEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCC----CCC----------------------------
Q 023500 82 FECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTD----SDN---------------------------- 128 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~----~~~---------------------------- 128 (281)
...++.-.||..+-.|++|. .++..+.+++.|++.+.+.+.... +..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 23455667899999999998 567789999999988877543210 000
Q ss_pred -------ceeeeeeee----------cc--C-C----c------cccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccc
Q 023500 129 -------WHCVQTISE----------SN--N-G----H------SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178 (281)
Q Consensus 129 -------~~~~~~~~~----------~~--~-~----h------~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~ 178 (281)
|..+..... .. . . + ...+++++.++-|.+.+.|...|.|.+|+++.+-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 000000000 00 0 0 1 245788889999999999999999999987643211
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcC------C---cc-------------
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLID------G---PS------------- 235 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~------~---~~------------- 235 (281)
....-...|..+|+.++.+.- ..+++++.+|-+.+|+.++..+.. . ..
T Consensus 484 ---------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 484 ---------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ---------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC
Confidence 111112247889999988864 468899999999999877643211 0 00
Q ss_pred -c---------eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 -Y---------KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 -~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. ........+|...|++++|||+|++ +++++-|++||+||+..
T Consensus 555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPT 607 (910)
T ss_pred ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccC
Confidence 0 0112345679999999999999986 66999999999999875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=147.73 Aligned_cols=264 Identities=19% Similarity=0.249 Sum_probs=164.0
Q ss_pred EEEcCC---CCEEEEeeCCCcEEEEecCCCcee----eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 9 CAWSPS---GKLLATASFDATTCIWEDVGGDYE----CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 9 ~~~~~~---~~~l~tg~~d~~i~lw~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..|++- ..+||.+.+||.|.|+|.....+. .++....|...|..+.|-|...+|++++.|.++++||+....-
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 456652 347999999999999986544332 1345568999999999999777899999999999999975542
Q ss_pred eEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCc---------------eeeeeee---eccCCc
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNW---------------HCVQTIS---ESNNGH 142 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~---------------~~~~~~~---~~~~~h 142 (281)
.....+.+|..-|.+++|+|+.. .+++|+.||.|.|||+.-...... .....+. ..-.+|
T Consensus 135 -~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 -VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred -ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 22335789999999999999866 789999999999999764321000 0000000 001133
Q ss_pred cccEEE---EEEccCCCEEEEeeC-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCC
Q 023500 143 SSTIWA---LSFNAKGDKLVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217 (281)
Q Consensus 143 ~~~v~~---~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d 217 (281)
...+.. +.+..|...|++++. |+.|++||+...+.....+........... .-...+.++..+..| ++.+.+.|
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s-krs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS-KRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc-cceeeeEEEEecCCCCeEEEEecC
Confidence 333443 555577788999887 999999998644322221111000000000 001223445555433 55556669
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
++|.+|++...... +. .++... -.......-..+|++. .+++|+.|....+|.+.++
T Consensus 293 ~sIy~ynm~s~s~s--P~--~~~sg~-~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 293 NSIYFYNMRSLSIS--PV--AEFSGK-LNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CcEEEEeccccCcC--ch--hhccCc-ccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence 99999977543221 11 111100 0111122334678776 5779999999999998754
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=148.96 Aligned_cols=227 Identities=19% Similarity=0.285 Sum_probs=164.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++-. +.+|++|+.++.|.+|....++.. ..+...+-++++++|+.+|.+++.||+|-.|++-++....
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s- 129 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS- 129 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-
Confidence 45566666654 559999999999999976554432 2233456789999999999999999999999999986554
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s 160 (281)
...++.+|.+.|.++.|+|.+++||+.+.||+|++|++++..... .+..+......- ...+..++|+|++..|+.
T Consensus 130 --~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 130 --QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred --hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh--hcccCCccccccccceeeeeeecCCCCeEEe
Confidence 357789999999999999999999999999999999987542110 011111111111 456788999999888888
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
...|+.|++|+.+. |.....+.. .+...+..++|+|+| ++|+++.||.+-+|+...-
T Consensus 206 ~~~d~~Vkvy~r~~-----------we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---------- 264 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKG-----------WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---------- 264 (933)
T ss_pred eccCCeEEEEccCC-----------ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc----------
Confidence 88999999997753 232222222 233448889999988 5777888999999977430
Q ss_pred eeeeccCCCCCeeEEEEcCCCCe
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERR 261 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~ 261 (281)
.. ..-...|.+++|.|+...
T Consensus 265 ~~---~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 265 ER---HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred hh---ccccceeEEEecCCCCCe
Confidence 00 122356899999997653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=148.28 Aligned_cols=232 Identities=21% Similarity=0.364 Sum_probs=169.3
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..++|.|||..|+.+. +..+.+||++.+. .+.++++|.+.|+|++|+.+|.+++||+.|+.|.+|+-+....
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-- 87 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-- 87 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--
Confidence 3688999999998776654 4558899998875 4789999999999999999999999999999999998654332
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
-. ..|.+.|.|..|+|-.+.+++++-. ..-+|..++.. +.+ ..-..++.+.+|..||++|+.|..
T Consensus 88 --Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---------V~K--~kss~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 88 --LK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---------VSK--HKSSSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred --ee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---------HHh--hhhheeEEEeeecCCCcEEEEecc
Confidence 11 3689999999999999999998853 34567333221 111 012356889999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc------eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG------IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+|+|.+=+-. +.+ +....-++..+.+|++++|+|.. .++....++++.++....
T Consensus 153 nGTIsiRNk~-gEe---------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---------- 212 (1081)
T KOG1538|consen 153 NGTISIRNKN-GEE---------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG---------- 212 (1081)
T ss_pred CceEEeecCC-CCc---------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----------
Confidence 9999875321 110 12223345578899999999842 466666777888875543
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..+...+.-.....|+.+.|+|.+ +..||.|+.+++|-
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFT 250 (1081)
T ss_pred eeecccccCCCCchhheeccCCcE-EEEccCCCceEEEe
Confidence 122333445567789999998875 45677799998875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=129.83 Aligned_cols=238 Identities=15% Similarity=0.217 Sum_probs=160.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|..++.+++|.++. .+++|+-||.|+++|.+++... .+..|.++|.|+.+++....+++||.|++|++||.+...
T Consensus 53 ~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~- 127 (323)
T KOG1036|consen 53 HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV- 127 (323)
T ss_pred cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce---eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-
Confidence 77899999999754 4569999999999999887643 445699999999999988899999999999999986421
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+..++. ....|.++.. .++.|+.|+.|..|.+||+...+.. ++.....-.-++.|+++.|+++-++.+
T Consensus 128 --~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~-------~q~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 128 --VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP-------FQRRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred --cccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccch-------hhhccccceeEEEEEEEecCCCceEEE
Confidence 222222 2235666544 4568899999999999998764321 111112234678899999988888999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+-||.+.+=..+.........++ .+-.+.... -.-.+|.+++|+|- +.+++|+.||-+.+|+... . ++
T Consensus 196 SieGRVavE~~d~s~~~~skkya-FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~-----r---Kr 266 (323)
T KOG1036|consen 196 SIEGRVAVEYFDDSEEAQSKKYA-FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN-----R---KR 266 (323)
T ss_pred eecceEEEEccCCchHHhhhcee-EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc-----h---hh
Confidence 99998876333322111110000 000000000 01357889999985 6799999999999996532 1 12
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
+ ++....+..|..++|+.+|. +||.++
T Consensus 267 l-~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 267 L-KQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred h-hhccCCCCceEEEEeccCCC-eEEEEe
Confidence 2 22223345689999999886 456554
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=133.34 Aligned_cols=173 Identities=18% Similarity=0.349 Sum_probs=135.6
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEec-CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWED-VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+|...|+.++|+|..+.|++|+.|.+-.+|.. .++++++.-.+..++..+++|.|+|.++.+++||..+.|-||-+...
T Consensus 53 ~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred hhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 58899999999999999999999999999987 67777777777789999999999999999999999999999998766
Q ss_pred CeeEE-eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC-----CCCC-CCCce---eeeeeeeccCCccccEEEE
Q 023500 80 NEFEC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA-----EDTD-SDNWH---CVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 80 ~~~~~-~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~-----~~~~-~~~~~---~~~~~~~~~~~h~~~v~~~ 149 (281)
+.+.. ..+-+.+.+.|.++.|||++-++++||.|+.++++-. ++.+ ..+|- ....+-.......+.+..+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 54422 2223446778999999999999999999999999842 2211 11110 0001100111345778999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCC
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.|+|+|..|+=.+.|+++.+-|..
T Consensus 213 ~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred EeCCCCCEeeEecCCCceEEeecC
Confidence 999999999999999999998764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=134.86 Aligned_cols=149 Identities=13% Similarity=0.267 Sum_probs=113.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc-
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA- 92 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~- 92 (281)
..+|++...|.++|||..++. .+..+++|...++.++|.. .++.+.+++.||+|++||++...+. ....+..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence 358888889999999988764 3678889999999999976 4678999999999999999866542 233445554
Q ss_pred cceeEEEecCCCCeEEEEec----CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEEEeeCCCcE
Q 023500 93 QDVKMVQWHPTMDVLFSCSY----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTI 167 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i 167 (281)
....|++.+-.++.++.|.+ |-.|.+||+..... .+......|..-|++++|+|. ..+|++|+.||.+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 34556666556677777653 45889998875431 122233579999999999995 4699999999999
Q ss_pred EEEeCCc
Q 023500 168 KIWGADI 174 (281)
Q Consensus 168 ~~w~~~~ 174 (281)
.+||++.
T Consensus 191 nlfD~~~ 197 (376)
T KOG1188|consen 191 NLFDTKK 197 (376)
T ss_pred EeeecCC
Confidence 9999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-17 Score=131.15 Aligned_cols=230 Identities=12% Similarity=0.199 Sum_probs=149.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
++++++++.|+.+.+||..+++ .+..+.++. .+.+++|+|++..+ ++++.++.|++||...++. ...+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV---IGTLPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE---EEeccCCC-
Confidence 3578899999999999987664 355666544 46789999999876 6778899999999875542 23333333
Q ss_pred ceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cEEEEe
Q 023500 94 DVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWG 171 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~w~ 171 (281)
.+..+.|+|+++.+++ ++.|+.+++|++.... .+..+. +...+.+++|+|++..++++..++ .+.+||
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-----~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRK-----VLAEIP-----VGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-----EEeEee-----CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 3567899999987654 4568999999886531 222221 123357899999999999888765 456677
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCCcEEEEecccCCCcCCccceeee-eeccCC--
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADDSVQFFVESKDDLIDGPSYKMLL-KKEKAH-- 246 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h-- 246 (281)
.+.... ..... .......+.|++++. + +++..++.+.+|+....... ..+. .....+
T Consensus 144 ~~~~~~-----------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-----~~~~~~~~~~~~~ 205 (300)
T TIGR03866 144 TKTYEI-----------VDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-----KKITFEIPGVHPE 205 (300)
T ss_pred CCCCeE-----------EEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-----eeeeecccccccc
Confidence 653211 11111 123345678888764 3 44456899999977543211 1110 000011
Q ss_pred CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......++|+|+++.++++.+.++.+.+||+..
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 112356889999887666666778899999753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=140.86 Aligned_cols=241 Identities=17% Similarity=0.237 Sum_probs=171.8
Q ss_pred ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 5 TVRSCAWSPSGK-LLATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 5 ~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.+..+.|+.... ..|+.+.|..+++|...+. +...+....+. .-.|++......++++||..+.|++||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-- 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-- 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH--
Confidence 477788887654 3456678889999975433 23333333332 3345555555689999999999999999732
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
.+.+.+++|.+.|+++.++-...+|++++..|.|.+..+..... ..++. .+....|.-+.|+|..+ +|.+
T Consensus 112 -l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-----tt~f~---~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 112 -LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-----TTTFT---IDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred -HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-----cccee---cCCCCeEEEeecccccceeeEe
Confidence 35677899999999999999999999999999999986654321 11121 11124566899999766 5777
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
++.+|.|.+||+... ++.......|..+...++|+| +.++++.+.|+.+.+|+..... ..+.
T Consensus 183 asd~G~VtlwDv~g~-----------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~ 246 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGM-----------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDR 246 (673)
T ss_pred eccCCeEEEEeccCC-----------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----ccce
Confidence 899999999998643 222233334677777777776 4578999999999999775421 1122
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ ..+.|..+++|.++|. +|+.|+..|.|..||++.+
T Consensus 247 l-----~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 247 L-----TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred e-----eecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 2 2355789999999875 6788999999999999754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=140.62 Aligned_cols=169 Identities=20% Similarity=0.297 Sum_probs=128.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|++-|+|++|+.+|.+|++||.|--+.|||+...+. ++. -.||...|++++|-| +.+.++||+.|..|+++|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 889999999999999999999999999999875443 333 368999999999999 356789999999999999974
Q ss_pred CC-------eeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCC--ceeeeeeeeccCCccccEEE
Q 023500 79 GN-------EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDN--WHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 79 ~~-------~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~ 148 (281)
.. ..+....+..|...|..++-.|.+ +.+.++++||+++-+|+.+...-. ..+...+... ....-...|
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-~~~lielk~ 205 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-NPQLIELKC 205 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh-chhhheeee
Confidence 22 122345567899999999999988 789999999999999997643210 0010011000 011234578
Q ss_pred EEEccCC-CEEEEeeCCCcEEEEeCC
Q 023500 149 LSFNAKG-DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 149 ~~~~~~~-~~l~s~~~d~~i~~w~~~ 173 (281)
+..+|.. .+|+.|+.|...++||.+
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhhh
Confidence 9999865 589999999999999953
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=139.61 Aligned_cols=157 Identities=17% Similarity=0.355 Sum_probs=125.9
Q ss_pred cceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+.|.++.|+|.- .+|++|+.|++|.|||..+... ++.+. -+..-+.|+|+|.+-.+++|+.|.++..+|+..-.
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P--l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASP--LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-- 262 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCc--cceee-eeccccceecCccccceeeccccccceehhhhhhc--
Confidence 578899999955 5888999999999999876542 22222 13445789999988889999999999999987544
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.++.+..+|.++|..|.|+|.|+-+++||.|.+|+|+.+....+.....-. .-..|.|+.|+.|.+++++|+
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--------RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--------RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--------hhheeeEEEEeccccEEEecC
Confidence 357788999999999999999999999999999999988766543211001 114589999999999999999
Q ss_pred CCCcEEEEeCC
Q 023500 163 DDLTIKIWGAD 173 (281)
Q Consensus 163 ~d~~i~~w~~~ 173 (281)
.|+.|++|...
T Consensus 335 dd~nvRlWka~ 345 (433)
T KOG0268|consen 335 DDGNVRLWKAK 345 (433)
T ss_pred CCcceeeeecc
Confidence 99999999643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=135.43 Aligned_cols=214 Identities=18% Similarity=0.280 Sum_probs=156.6
Q ss_pred eeeecCCCCCeeEEEEcCCC--CEEEEecCCCcEEEEEec-CCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCe
Q 023500 40 VATLEGHENEVKSVSWNASG--TLLATCGRDKSVWIWEVM-PGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNT 115 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~ 115 (281)
.....-+.+.|++++|+|.. ..+++|..-|+|-+||+. ..........+..|...|.++.|+|... .+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34455688999999999965 468888889999999994 2222234566778999999999999754 7999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|++-|++..-.+ .+..+. .-......++|+.+...++.+..=|.+.+||.+..+.. +..++ .
T Consensus 259 iR~~D~~~~i~e---~v~s~~----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~~~~-------l 320 (498)
T KOG4328|consen 259 IRLQDFEGNISE---EVLSLD----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YENLR-------L 320 (498)
T ss_pred eeeeeecchhhH---HHhhcC----ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----chhhh-------h
Confidence 999988765321 111111 12345667888888778888887778999998754321 11111 3
Q ss_pred cCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 196 HDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 196 ~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
|...|.++.+.|- .++++++.|++.++|+.+.-.....+ +-....|...|+++.|+|.+.. |+|-+.|..||
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IR 394 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIR 394 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-----ceecccccceeeeeEEcCCCCc-eEeeccCCceE
Confidence 6778999999884 57999999999999987642221111 1223468899999999999877 66888899999
Q ss_pred EEEc
Q 023500 274 IWEL 277 (281)
Q Consensus 274 iw~~ 277 (281)
|||.
T Consensus 395 v~ds 398 (498)
T KOG4328|consen 395 VFDS 398 (498)
T ss_pred Eeec
Confidence 9997
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-18 Score=128.82 Aligned_cols=210 Identities=21% Similarity=0.364 Sum_probs=144.9
Q ss_pred CccceeEEEEcCCC-----CEEEEeeCCCcEEEEecC--CCceeeeeee-----cCCCCCeeEEEEcC-CCCEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-----KLLATASFDATTCIWEDV--GGDYECVATL-----EGHENEVKSVSWNA-SGTLLATCGRD 68 (281)
Q Consensus 2 h~~~i~~~~~~~~~-----~~l~tg~~d~~i~lw~~~--~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s~~~d 68 (281)
|-.+++.+-|.|+. ++|||.+ ..++||... ..+..+...+ ..|..++++..|+. +.++|.++|-|
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 55678999999986 3777765 569999865 3333332222 34667999999988 78999999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
-+..+||+..+........+-+|..+|..++|...+ +++++++.||+||++|+.+.+-. ..+.+- . ....+..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~---p-~~~~pLl 246 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYED---P-SPSTPLL 246 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecC---C-CCCCcce
Confidence 999999998764333345567899999999999854 47999999999999988754211 011110 0 1123344
Q ss_pred EEEEccC-CCEEEEeeCCC-cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 148 ALSFNAK-GDKLVSCSDDL-TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 148 ~~~~~~~-~~~l~s~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
-++|++. -.++++-..|+ .|.+-|++.-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------------------- 276 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------------------- 276 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCC--------------------------------------------------
Confidence 5566543 34555544333 3433333210
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..-+.+...|...|+.++|.|..+.-++|||+|..+.|||+..+
T Consensus 277 -----------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 277 -----------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred -----------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 11133456799999999999998888999999999999998754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-17 Score=138.06 Aligned_cols=271 Identities=20% Similarity=0.295 Sum_probs=178.4
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.|+..+++.+++|.++++|+|..||.|.+|.... ++....+.+.=|...|.+++|+++|.+|+|||..+.+-+|.+..
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3777899999999999999999999999997654 22222344555889999999999999999999999999999876
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec----cCCccccEEEEEEccC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES----NNGHSSTIWALSFNAK 154 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~ 154 (281)
+.. .-+..-.+.|..+.++|++.+.+....|+.|.+-...+... ..-+..+... ..+.++-.+.++++|.
T Consensus 283 ~~k----qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 283 GKK----QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--KSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred CCc----ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh--hhhccCccCCCccccccccccceeEEEcCC
Confidence 541 22334467899999999999999999999998886543211 1111111111 1223445667788886
Q ss_pred CCEEEEeeCCCcEEEEeCCccccc---------cCCCC------------------------------------------
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQ---------SGDGY------------------------------------------ 183 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~---------~~~~~------------------------------------------ 183 (281)
...++-++..|.|++||.-..... ...+.
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 667777888888888875311100 00000
Q ss_pred -----cccceeEEeecccCcceEEEEeC--CCc-eeeecCCCCcEEEEecccCCCc-CCccceeeeeeccCCCCCeeEEE
Q 023500 184 -----ASWRHLCTISGYHDRTIFSVHWS--REG-IIASGAADDSVQFFVESKDDLI-DGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 184 -----~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
+.+.....+...|+......++. +.. ..++++.|+.+++|........ .......+......|..++++++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 00000111111122222222222 222 6788899999999988543222 22233334444446899999999
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 255 WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+.+|. ++++|.|+.|.|||..+
T Consensus 517 fs~dGs--lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQDGS--LLAVSFDDTITIWDYDT 539 (792)
T ss_pred hcCCCc--EEEEecCCEEEEecCCC
Confidence 999885 45788899999999765
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=131.33 Aligned_cols=204 Identities=22% Similarity=0.378 Sum_probs=142.8
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCC-----ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w 74 (281)
|+.+|..++|+| +...+|+||+|.+|.||+.-.+ ..+++..+.||...|--++|+|. .+.|+|+|.|++|.+|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 889999999999 6678999999999999985322 23457889999999999999995 6789999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc-cEEEEEEcc
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS-TIWALSFNA 153 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 153 (281)
++..+.. +-.+. |.+-|.++.|+.++.++++++.|.+|+|||...... . ... .+|.+ ...-+.|-.
T Consensus 160 nv~tgea---li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~------v--~e~-~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 160 NVGTGEA---LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV------V--SEG-VAHEGAKPARAIFLA 226 (472)
T ss_pred eccCCce---eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE------e--eec-ccccCCCcceeEEec
Confidence 9977653 33344 999999999999999999999999999998765431 1 111 23322 234566777
Q ss_pred CCCEEEEee---CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-c-eeeecCCCCcEEEEecccC
Q 023500 154 KGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-G-IIASGAADDSVQFFVESKD 228 (281)
Q Consensus 154 ~~~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~ 228 (281)
++..+-||- .+..+.+||.+... +.. ....+. ....|.-=-++++ + +++.|-.|+++|.|.+..+
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~----eP~----~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLE----EPI----ALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred cCceeeeccccccccceeccCccccc----Ccc----eeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 887665553 56788899864211 000 000000 0111111123333 2 4566778999999976543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=129.43 Aligned_cols=269 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC----Cceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG----GDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~----~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+.|+++.|+.++++||+|+.|...++|.... ...+++.... .|...|.|++|+...+++++|+.+++|.+.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 778899999999999999999999999998532 1123444443 35589999999998899999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG- 155 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 155 (281)
...+... +..-......|..+..+|..+.+++.+.++.|.+||.....+.. ..+... .-......+.|+|..
T Consensus 135 Et~qsi~-V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~----~~~~~A--N~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 135 ETKQSIY-VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI----SLVLPA--NSGKNFYTAEFHPETP 207 (609)
T ss_pred ccceeee-eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC----ceeeec--CCCccceeeeecCCCc
Confidence 7654322 11112234589999999999999999999999999987653211 111111 123446778899864
Q ss_pred CEEEEeeCCCcEEEEeCCcccccc-----CCCCc----cc----------------ceeE-Eeeccc-------------
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQS-----GDGYA----SW----------------RHLC-TISGYH------------- 196 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~-----~~~~~----~~----------------~~~~-~~~~~~------------- 196 (281)
.+|++.+..+-+.+||....+... ..+++ .| +..+ .+..++
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 578888888889999976432110 00000 00 0000 001111
Q ss_pred -----CcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCC--------------ccceeeeeeccCCCCCeeEEEEcC
Q 023500 197 -----DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--------------PSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 197 -----~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
..++.+++|-.+..+++|+.+=.+.+|.+....-..+ ......+...++|.+-++.+.|+|
T Consensus 288 ~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred CcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 1244556666666788999998999997654322111 011112234578999999999999
Q ss_pred CCCeeEEEeCCCCeEEEEEcc
Q 023500 258 GERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.. ++|++.+-...++||.-.
T Consensus 368 H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 368 HN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred Cc-ceEeccchhhheeccccc
Confidence 75 688888889999999754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-19 Score=156.40 Aligned_cols=245 Identities=23% Similarity=0.341 Sum_probs=169.3
Q ss_pred EEEEcCCCC-EEEEee----------CCCcEEEEecCC--C--ceeeeeeecCCCCCeeEEEEcCCCCE----EEEecCC
Q 023500 8 SCAWSPSGK-LLATAS----------FDATTCIWEDVG--G--DYECVATLEGHENEVKSVSWNASGTL----LATCGRD 68 (281)
Q Consensus 8 ~~~~~~~~~-~l~tg~----------~d~~i~lw~~~~--~--~~~~~~~~~~h~~~v~~v~~~~~~~~----l~s~~~d 68 (281)
.++|+|.+. ++|+|. .+.++.||.... . +.+.+..+. -....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 565553 345566775422 1 122333333 3456789999887665 8889999
Q ss_pred CcEEEEEecC---CCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 69 KSVWIWEVMP---GNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 69 ~~v~~w~~~~---~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
|.|-+||... +.+.+.+.....|.+.|..+.|+|... ++++|+.||.|.|||+...... . ... .....+
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~----~~~--~~~~~~ 162 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-F----TPG--SQAPPS 162 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-C----CCC--CCCCcc
Confidence 9999999754 333445566778999999999999765 9999999999999999864321 1 010 112457
Q ss_pred cEEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc--eeeecCCC---
Q 023500 145 TIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG--IIASGAAD--- 217 (281)
Q Consensus 145 ~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~d--- 217 (281)
.|.+++|+.. ...|++++.+|.+.|||++..++.. .++.. ....+..++|+|+. .+++++.|
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-----------~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~ 231 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-----------KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA 231 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccc-----------ccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence 8999999864 4579999999999999987543221 11111 11335678999975 34444433
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.+|+.+-.. .. .+...+|+..|.++.|++.+..+++|++.|+.+..|+..+
T Consensus 232 PviqlWDlR~as----sP----~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 232 PVIQLWDLRFAS----SP----LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ceeEeecccccC----Cc----hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 367888654221 11 2234689999999999999878899999999999999765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=138.94 Aligned_cols=217 Identities=17% Similarity=0.273 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
|++......++++|+..+.++|||.... .+...+++|...|+++.++....+||+++..|.|.+..+..... ...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~---tt~ 158 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK---TTT 158 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc---ccc
Confidence 4444445578999999999999998632 35667889999999999999999999999999999999876542 222
Q ss_pred ecCC-ccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEEeeCC
Q 023500 88 LQGH-AQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDD 164 (281)
Q Consensus 88 ~~~~-~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 164 (281)
+.-. ...|+-+.|+|... +|.+++.+|.|.+||+..... .......|.++...++|+|..+ +|++.+.|
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCccceEEEeccc
Confidence 2221 33467899999877 577899999999999875421 1112347889999999999754 78899999
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
..|.+||+...+.. ..+ ..+.+..+++|.++|. +++|...|.+..|+++.. +. -+...
T Consensus 231 kki~~yD~~s~~s~-----------~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-----k~---Pv~v~ 289 (673)
T KOG4378|consen 231 KKINIYDIRSQAST-----------DRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-----KA---PVAVR 289 (673)
T ss_pred ceEEEeeccccccc-----------cee--eecCCcceeeecCCceEEEeecCCceEEEEecccC-----CC---CceEe
Confidence 99999998633211 111 1356788899999885 677888999999977542 11 12334
Q ss_pred cCCCCCeeEEEEcCC
Q 023500 244 KAHDMDVNSVQWSPG 258 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~ 258 (281)
..|...|++++|.|.
T Consensus 290 sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 290 SAHDASVTRVAFQPS 304 (673)
T ss_pred eecccceeEEEeeec
Confidence 578888999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=139.87 Aligned_cols=254 Identities=18% Similarity=0.277 Sum_probs=177.4
Q ss_pred CCccceeEEEEcCC-----------CCEEEEeeCCCcEEEEecCCC---ce--------eeee-----------------
Q 023500 1 MHTRTVRSCAWSPS-----------GKLLATASFDATTCIWEDVGG---DY--------ECVA----------------- 41 (281)
Q Consensus 1 ~h~~~i~~~~~~~~-----------~~~l~tg~~d~~i~lw~~~~~---~~--------~~~~----------------- 41 (281)
+|...|+.+.--|- ..-|.|++.|++|+||+.... +. ..++
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 46667777765551 124789999999999986431 00 0000
Q ss_pred -------eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-C--CCeEEEEe
Q 023500 42 -------TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-T--MDVLFSCS 111 (281)
Q Consensus 42 -------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~--~~~l~s~s 111 (281)
..-+..-.+.+++.+|+|++|++|..-|+++|++++.-.. .....+|..+|.|+.|+- . ..+|++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhcc
Confidence 0012334688999999999999999999999999975543 445679999999999984 2 45899999
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC--CEEEEeeCCCcEEEEeCCccccccCCCCccccee
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG--DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 189 (281)
.|.-|.++|+.+.- .+.+...+|...|+++.|-..+ ..+++|+.|..|.+ +..-+ ...+..-.+..
T Consensus 524 rdRlIHV~Dv~rny--------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk---~~~g~~f~r~t 591 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNY--------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQK---ASSGRLFPRHT 591 (1080)
T ss_pred CCceEEEEeccccc--------chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcc---ccCceeccccc
Confidence 99999999987641 1223345899999999998776 68999999986643 32210 01111000111
Q ss_pred EEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 190 CTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.. ....++..+...|. +++++++.|+.+++|+...+ +.. ..++....|++..-.+...|.+- ++++...
T Consensus 592 ~t---~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-----Kq~-k~FKgs~~~eG~lIKv~lDPSgi-Y~atScs 661 (1080)
T KOG1408|consen 592 QT---LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-----KQV-KSFKGSRDHEGDLIKVILDPSGI-YLATSCS 661 (1080)
T ss_pred cc---cccceEEEeeeCCCcceEEEEecccceEEEecccc-----cee-eeecccccCCCceEEEEECCCcc-EEEEeec
Confidence 11 12356677888875 68999999999999976543 222 23455677888888899999774 5778888
Q ss_pred CCeEEEEEccc
Q 023500 269 DGMIKIWELAN 279 (281)
Q Consensus 269 Dg~v~iw~~~~ 279 (281)
|.+|.++|+.+
T Consensus 662 dktl~~~Df~s 672 (1080)
T KOG1408|consen 662 DKTLCFVDFVS 672 (1080)
T ss_pred CCceEEEEecc
Confidence 99999999764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=139.64 Aligned_cols=156 Identities=21% Similarity=0.401 Sum_probs=118.9
Q ss_pred EcCCCCEEEE--eeCCCcEEEEecCCCceeeeeeecC--CCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCC----e
Q 023500 11 WSPSGKLLAT--ASFDATTCIWEDVGGDYECVATLEG--HENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----E 81 (281)
Q Consensus 11 ~~~~~~~l~t--g~~d~~i~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~----~ 81 (281)
|+.+.+++|. .+..|.|.||+.+..-..+-..+.+ ....|+.+.|+| |..+|+.+++|+.|++|.+..+. +
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4445555543 3456899999976432111111111 346789999999 78899999999999999987543 2
Q ss_pred eEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..+...++.|.+.|+++.|||- .++|++++.|.+|++||+..... .-...+|++.|..++|+|+|+.+++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---------~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---------YSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---------hheeccCcCceeEEEECCCCcceee
Confidence 3345678899999999999996 56899999999999999876532 1123489999999999999999999
Q ss_pred eeCCCcEEEEeCCcc
Q 023500 161 CSDDLTIKIWGADIT 175 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~ 175 (281)
.+.||++++|....+
T Consensus 738 VcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSR 752 (1012)
T ss_pred eecCceEEEeCCCCC
Confidence 999999999976644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-15 Score=126.46 Aligned_cols=245 Identities=28% Similarity=0.529 Sum_probs=176.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEE-cCCCC-EEEEecC-CCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSW-NASGT-LLATCGR-DKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~-~~~~~-~l~s~~~-d~~v~~w~~~ 77 (281)
|...|..+.+.+.+..++.++.|+.+.+|+..... ..+..+.++. ..+..+.+ ++++. .++..+. |+.+++|++.
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 67889999999999999999999999999987664 2344555534 36777777 88887 5555444 9999999986
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.. ......+..|...|..++|+|++..+++++. |+.+++|+..... .+..+ .+|...|.+++|+|++.
T Consensus 143 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 143 TP--GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTL----AGHTDPVSSLAFSPDGG 211 (466)
T ss_pred CC--CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEee----ccCCCceEEEEEcCCcc
Confidence 51 1345667889999999999999998888886 9999999876521 12222 34888999999999987
Q ss_pred -EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 157 -KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 157 -~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
.+++++.|+.+++||....... ......|.... ...+++++ .+++++.|+.+++|+......
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLL-----------RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEE-----------eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 6666699999999966522111 10111233332 22667765 777899999999997754211
Q ss_pred cceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... ..|...+.++.|+|++.. +++++.|+.+++|+...
T Consensus 276 ---~~~~~-~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 276 ---LLRTL-SGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLET 315 (466)
T ss_pred ---EEEEE-ecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCC
Confidence 11111 567889999999996655 45588888899998754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-19 Score=148.82 Aligned_cols=237 Identities=24% Similarity=0.389 Sum_probs=171.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.|+.|...|.+++||+.|..++||...+. .+++...||.+.|+.++.+.+..+++++|.|.-|++|.++.+.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~- 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA- 265 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-
Confidence 6677999999999999999999999999986655 4789999999999999998888899999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++.++.+|.+.|++++|+|- .+.+.||++++||..-. +...+...... .....+-++.|-..+..++|+
T Consensus 266 --pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~---~~~y~prp~~~--~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 266 --PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLE---PRIYVPRPLKF--TEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred --hHHHHhccccceeeeccCcc----ccCCCCCceEecccccc---ccccCCCCCCc--ccccceeeeeccccccccccc
Confidence 47789999999999999996 48899999999976521 11111111111 112556677888888899999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC--CCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+.|+.-+.|...... ++.. .+.-+..+ -+.++++.-.+-.+.+|.... + .+
T Consensus 335 s~d~ea~n~e~~~l~---------~~~~---------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~-----g----~l 387 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA---------WRSN---------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYT-----G----QL 387 (1113)
T ss_pred cCCcccccchhhHhh---------hhcc---------ceEEEeccccccccceeeeeeeEeeeeeccc-----c----hh
Confidence 999998888543211 1100 00000000 112333333344455563322 1 12
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|...+..+.++|.++++..+++.||...|||+..
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 2334578889999999999998888999999999999754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=137.67 Aligned_cols=235 Identities=21% Similarity=0.353 Sum_probs=163.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|.|++|+.||+++|+|+.|..+.+|...- +-+-.+ .|.+.|.|+.|+|-.+.|+|++-. ..-+|+.....
T Consensus 52 HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~- 125 (1081)
T KOG1538|consen 52 HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS- 125 (1081)
T ss_pred ccceEEEEEEccCCceeccCCCceeEEEecccc---cceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-
Confidence 889999999999999999999999999997532 112232 499999999999999999998863 24568653221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-----C
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-----D 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~ 156 (281)
+.. ......|.+++|.-+|++++.|-.+|+|.+-+-...+ ...++. ..|..++|++++|+|.. +
T Consensus 126 ---V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe------k~~I~R-pgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 126 ---VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE------KVKIER-PGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred ---HHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc------ceEEeC-CCCCCCCceEEEecCCCCCCccc
Confidence 100 1124568899999999999999999999986332211 112222 23567899999999853 4
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
.++......++.++.+...... .+ + ..+-...|+++.++| +++.|+.|+-+.+|--..
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Ig-k~-----r-------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-------- 253 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIG-KD-----R-------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-------- 253 (1081)
T ss_pred eEEEEeccceeEEEEecceeec-cc-----c-------cCCCCchhheeccCCcEEEEccCCCceEEEeecC--------
Confidence 6777888888888865422110 00 0 012234567767666 678899999999994322
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..+........+|+.++..|+++ .++.|..||+|--|++
T Consensus 254 --vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 --VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNL 292 (1081)
T ss_pred --eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhh
Confidence 12222333567899999999876 5778889999877664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=125.98 Aligned_cols=226 Identities=22% Similarity=0.314 Sum_probs=151.3
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCC---eeEEEEcCCCCEEEEecCCCcEEEEEec-CCCeeEEeEee
Q 023500 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE---VKSVSWNASGTLLATCGRDKSVWIWEVM-PGNEFECVSVL 88 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~ 88 (281)
|+..++|+.+.|.-|.+||..+++..+....-.|.++ ..+++|+|||.+|++| ..+.|+++|+. ++.. ......
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~-c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD-CPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC-Ccchhh
Confidence 5667999999999999999988876554443335443 4689999999999886 45899999994 4432 122222
Q ss_pred c-----CCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 89 Q-----GHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 89 ~-----~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
. +....+.|++|+|... .++.++....+-|+.-... .....+ .+|.+.|+.++|.++|..|.+|.
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~ll----ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLL----GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----Cceeee----cccCCCeeeEEeccCcCeecccc
Confidence 2 3367789999999765 7899999888887733221 122222 38999999999999999999987
Q ss_pred C-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE--EeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 163 D-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV--HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 163 ~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+ |..|..||++......- .+... .+.+-..| ...+++ .+++|+.+|.+++|+.+.-..
T Consensus 270 Rk~dkIl~WDiR~~~~pv~-------~L~rh---v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-------- 331 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVY-------ALERH---VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-------- 331 (406)
T ss_pred cCCCeEEEEeehhccchhh-------hhhhh---ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--------
Confidence 5 67899999863321100 00000 01111222 234544 677788999999998865211
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.......|+..++.++++|- -.++|+++.
T Consensus 332 ~~sv~~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 332 EVSVTGNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred cccccccccccccceecCcc-cceeeeccC
Confidence 01122356778999999996 456777664
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-16 Score=133.56 Aligned_cols=261 Identities=21% Similarity=0.308 Sum_probs=186.1
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~ 81 (281)
...|+++.-+|--..+|.|..+|.|.|++...++ .+.+++.-.+.|+.++|..||+- +++|+..|.+-+||+...+
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk- 278 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK- 278 (910)
T ss_pred ccceeEeccCCcceEEEEeccCceEEEEEcccCc--EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe-
Confidence 3679999999999999999999999999987765 46677733599999999999875 6777778999999996443
Q ss_pred eEEeEe-ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc-cCCCEEE
Q 023500 82 FECVSV-LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLV 159 (281)
Q Consensus 82 ~~~~~~-~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~ 159 (281)
.+.. ...|...+..+.|-|....+++++.|+.+++|-.+..+-. .++...-.||.++..+++|. .++..+.
T Consensus 279 --l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-----pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 279 --LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-----PRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred --eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-----chheeeccCCCCCchheeeeccCcEEEE
Confidence 2233 3478888999999999999999999999999977654322 22333446899999999998 6788999
Q ss_pred EeeCCCcEEEEeCCccccccC------------CCC--------c-------------ccceeEE---------------
Q 023500 160 SCSDDLTIKIWGADITRMQSG------------DGY--------A-------------SWRHLCT--------------- 191 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~------------~~~--------~-------------~~~~~~~--------------- 191 (281)
+.+.|++++.+++....+... .+. + .|..+..
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 999999999886421110000 000 0 0100000
Q ss_pred -------eecc----cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 192 -------ISGY----HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 192 -------~~~~----~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
+... .+..+.+++.++.| +.+.|.+.|.+.+|....+ ...+ .+.....|..+|+.++...-+
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-----i~r~-sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-----IHRK-SFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----eeec-ccccCccccCceeEEEecCCC
Confidence 0000 12344566666654 5667778899999966542 1111 122346899999999998766
Q ss_pred CeeEEEeCCCCeEEEEEcccC
Q 023500 260 RRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 260 ~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+ ++++++.||.+++||+...
T Consensus 506 ~-~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 506 R-LLVSAGADGILKFWDFKKK 525 (910)
T ss_pred c-eEEEccCcceEEEEecCCc
Confidence 4 6789999999999998754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-17 Score=128.78 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=108.9
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
.+++|+++|..|++|+.||.+++|+..... .+.....|.++|.++.|+|||.+|++-+.| ..+||+...+..... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-K 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh-c
Confidence 578999999999999999999999843322 244556799999999999999999999999 899999987732211 1
Q ss_pred eecCCccceeEEEecCCC---CeE--EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VLQGHAQDVKMVQWHPTM---DVL--FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~---~~l--~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+..........+.|+-+. .+. +....-+.|+.|++..-.-. .+....+.... ...+.+++.+++|++++.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~---~~l~~~~~~~~-~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS---NFLRLRKKIKR-FKSISSLAVSDDGKFLALG 299 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc---cccchhhhhhc-cCcceeEEEcCCCcEEEEe
Confidence 112223345566676655 332 33333456676655322111 01111111112 2468999999999999999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
+.||.|.+++..
T Consensus 300 T~dGsVai~~~~ 311 (398)
T KOG0771|consen 300 TMDGSVAIYDAK 311 (398)
T ss_pred ccCCcEEEEEec
Confidence 999999999753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-14 Score=122.81 Aligned_cols=243 Identities=31% Similarity=0.583 Sum_probs=172.5
Q ss_pred CccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|..++|+|++++++.++. |+.+++|+.... ..+..+.+|...|.+++|+|++. .+++++.|+.+++||...+
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 7788999999999999888885 999999998764 34667778999999999999998 5666699999999987633
Q ss_pred CeeEEeE-eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. ... .+.+|.... ...|+|++..+++++.|+.+++|+...... ....+ .+|...+.++.|+|++..+
T Consensus 232 ~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 232 K---LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRTL----SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred c---EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEEE----ecCCccEEEEEECCCCCEE
Confidence 3 233 577787765 448999998889999999999998875432 11112 3678889999999988888
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeec-CCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASG-AADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
++++.|+.+++|+........ ... ...+...+..+.+.++ ..++.+ ..|+.+++|......
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------- 362 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLS---------SLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------- 362 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEE---------Eee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-------
Confidence 889989899999765332110 000 1124445777777333 234444 577888888654321
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEE-eCCCCeEEEEEcccC
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLAS-ASDDGMIKIWELANT 280 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s-~~~Dg~v~iw~~~~~ 280 (281)
.......+ ..+..+.+.+ . ..+.+ ++.++.+.+|+....
T Consensus 363 --~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 363 --PLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred --eeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence 11111111 1278899988 6 44544 788999999997653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=133.74 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=144.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+.|+.++.||.+.|-+... +. -..+++|.+.+.|-.|+|+|.-|+|+|.||.|++|.-. + ....++......|
T Consensus 76 d~~~i~s~DGkf~il~k~~-rV--E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RV--ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccc-hh--hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c---hHHHHHhhcCcee
Confidence 4678889999998875443 22 24667899999999999999999999999999999732 1 1122344456789
Q ss_pred eEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 96 KMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+|++|.|+.+.++-+..+ -.|+-...+. .+ +. =++|.+.|.+++|++..+.+++|+.|-..++||...
T Consensus 149 ~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-------k~--i~--WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQGGHISIKPLAANS-------KI--IR--WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred EEEEECCCCCceEEecCCeEEEeeccccc-------ce--eE--EeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 999999998755443332 2333221111 01 11 137999999999999999999999999999998642
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
.. +.. +..|+.+|++++|.|+..++.++.+ .+|+ .....+.|-.++
T Consensus 218 ~~------------Lf~-S~~~ey~ITSva~npd~~~~v~S~n-t~R~--------------------~~p~~GSifnls 263 (737)
T KOG1524|consen 218 AN------------LFT-SAAEEYAITSVAFNPEKDYLLWSYN-TARF--------------------SSPRVGSIFNLS 263 (737)
T ss_pred cc------------ccc-CChhccceeeeeeccccceeeeeee-eeee--------------------cCCCccceEEEE
Confidence 21 111 1247899999999999767665543 3331 122345688899
Q ss_pred EcCCCCeeEEEeCCCCeEE
Q 023500 255 WSPGERRLLASASDDGMIK 273 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~ 273 (281)
|+++|.+ +++|...|.|.
T Consensus 264 WS~DGTQ-~a~gt~~G~v~ 281 (737)
T KOG1524|consen 264 WSADGTQ-ATCGTSTGQLI 281 (737)
T ss_pred EcCCCce-eeccccCceEE
Confidence 9999975 66776677653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-17 Score=121.59 Aligned_cols=231 Identities=19% Similarity=0.311 Sum_probs=158.4
Q ss_pred CCCcEEEEecCCC-ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCC-------CcEEEEEecCCC------eeEEeEe
Q 023500 23 FDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNAS-GTLLATCGRD-------KSVWIWEVMPGN------EFECVSV 87 (281)
Q Consensus 23 ~d~~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d-------~~v~~w~~~~~~------~~~~~~~ 87 (281)
.|+.|.+-+.... .....+.+..|.++|+.++-+|. .+.|+|+-.| ..+.+|.+.... ..+++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4566666544322 22234567778899999999995 4555554332 356799985332 1233334
Q ss_pred ec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee-eccCCccccEEEEEEcc--CCCEEEEeeC
Q 023500 88 LQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNA--KGDKLVSCSD 163 (281)
Q Consensus 88 ~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~--~~~~l~s~~~ 163 (281)
+. .+-..|.|+.|.|++..+++-. |..|.+|+++..... +..+. .....++...++-+|+| ++..+++ ..
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~----vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI----VAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TS 191 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch----heeecccccccccceecccccCCCCccceEEE-eC
Confidence 43 4455899999999988888765 899999988765321 11111 11123566788889998 5555655 46
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
|+++..||.+.-. ....+...|...++.+.|.|+ .++++++.|+.+++|+.++- +.-+.
T Consensus 192 d~tl~~~D~RT~~-----------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~ 252 (370)
T KOG1007|consen 192 DSTLQFWDLRTMK-----------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQ 252 (370)
T ss_pred CCcEEEEEccchh-----------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------Ccccc
Confidence 8899999986321 122333457888999999986 47999999999999977642 12234
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....|..+|+++.|+|.-.++++++|.|..|.+|-..
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 5568999999999999777899999999999998653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-16 Score=118.57 Aligned_cols=251 Identities=16% Similarity=0.256 Sum_probs=159.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~ 80 (281)
|..+|.+++|+++|+.|+|+|.|..|.+||+..+. +++.+. ...+|+.+.|+|..+ ..+..=.+..-.+-++.+..
T Consensus 64 H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 64 HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred cccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 78999999999999999999999999999998776 466655 779999999999554 44444455555556654321
Q ss_pred eeEEeEee-cC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVL-QG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~-~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. .++..- .+ -.....+..|.+.++++++|...|.+.+++.++. +++..+... ....|..+.|+..++.|
T Consensus 141 h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-----e~vas~rit---s~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 141 H-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-----ECVASFRIT---SVQAIKQIIVSRKGRFL 211 (405)
T ss_pred e-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-----eeeeeeeec---hheeeeEEEEeccCcEE
Confidence 1 010000 00 0111223358899999999999999999987764 244333211 12568889999999999
Q ss_pred EEeeCCCcEEEEeCCc-cccccCCCCcccceeEEeecc-cCcceEEEEeCCCceeeecCCC--CcEEEEecccCCCcCCc
Q 023500 159 VSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGIIASGAAD--DSVQFFVESKDDLIDGP 234 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~ 234 (281)
+.-+.|..||.|+..- ..+....... +...+... ....=.+++|+.+|.++.+++. -.+++|....+
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e---~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G------ 282 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVE---PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG------ 282 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcC---hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc------
Confidence 9999999999998651 1110110100 00000000 0112245677777765544443 36677744332
Q ss_pred cceeeeeeccCCC-CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 235 SYKMLLKKEKAHD-MDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 235 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+++...+-. ....++.|+|-- .++++- .-|.++||...
T Consensus 283 ---sLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 283 ---SLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ---ceeeeecCCchhheeecccccce-eeeeec-cCCceEEEEee
Confidence 2333333443 457789999964 355555 67999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=128.76 Aligned_cols=223 Identities=25% Similarity=0.436 Sum_probs=141.9
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeE
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTI 116 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v 116 (281)
.|...+.||++.|.||+..|.|.+|++||+||+|++|.+..+. |++++. -.+.|+||+|+|.... +++++.+..+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 3456778999999999999999999999999999999998775 555543 2457999999998763 4444445556
Q ss_pred EEEeCCCCC-----------------CC------Cceee--eeee---eccCCccccEEEEEEccCCCEEEEeeCCC---
Q 023500 117 KVWWAEDTD-----------------SD------NWHCV--QTIS---ESNNGHSSTIWALSFNAKGDKLVSCSDDL--- 165 (281)
Q Consensus 117 ~~w~~~~~~-----------------~~------~~~~~--~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--- 165 (281)
.+-+..-++ .. .|... ...+ .....|...|..+.||..|+||++...++
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 555432110 00 00000 0000 00124778899999999999999987654
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeeccc-------------------------------CcceEEEEeCCCc-eeee
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYH-------------------------------DRTIFSVHWSREG-IIAS 213 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~-~~~~ 213 (281)
.|.|.++. +...+..+..-+.......+| ...+.+++.++.| -++.
T Consensus 547 ~VliHQLS--K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLS--KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecc--cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 45555443 222221111111111111111 2344566777755 4677
Q ss_pred cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
++.|+.+..|++.. .+..+ +..+.|...+++++|++. ..||++|++||++.|+
T Consensus 625 gs~d~k~~WfDldl----sskPy----k~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDL----SSKPY----KTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVF 677 (733)
T ss_pred ecCCCeeEEEEccc----Ccchh----HHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEE
Confidence 78888888886632 12222 334578899999999985 4689999999998886
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=124.12 Aligned_cols=116 Identities=27% Similarity=0.527 Sum_probs=100.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecC--------C------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV--------G------GDYECVATLEGHENEVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~--------~------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 67 (281)
|++.|+++.|+|+|++||+|+.+|.+.||... + ..+...+.+.+|.+.|..++|+|++.++++++.
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 88999999999999999999999999999765 1 224445677899999999999999999999999
Q ss_pred CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 68 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 68 d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
|+++++||+..+. ....+.+|...+..++|.|..+++++-|.|...+...
T Consensus 144 dns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred cceEEEEEeccce---eEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 9999999997664 4567788999999999999999998888887555443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-14 Score=117.71 Aligned_cols=257 Identities=11% Similarity=0.157 Sum_probs=154.1
Q ss_pred cceeEEEEcCCCCEEEEee-CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATAS-FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~-~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~ 80 (281)
.....++++|++++|+.++ .++.|.+|+.. ++....+.... ..+....++|+|++++|++++ .++.|.+|++....
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 3456789999999876654 57889999875 33333333322 334556899999999888776 48899999986322
Q ss_pred -eeEEeEeecCCccceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 -EFECVSVLQGHAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 -~~~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.......+. +.....++.++|+++++++ ...++.|.+|+++....-.......... .. ...+..+.|+|+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~--g~~p~~~~~~pdg~~l 189 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VE--GAGPRHMVFHPNQQYA 189 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CC--CCCCceEEECCCCCEE
Confidence 111222222 2234677889999988754 4456999999986521100000000010 01 1235678999999998
Q ss_pred EEeeC-CCcEEEEeCCccccccCCCCcccceeEEeec-----ccCcceEEEEeCCCce-eeec-CCCCcEEEEecccCCC
Q 023500 159 VSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISG-----YHDRTIFSVHWSREGI-IASG-AADDSVQFFVESKDDL 230 (281)
Q Consensus 159 ~s~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~~~~-~~d~~~~~~~~~~~~~ 230 (281)
++... ++.|.+|+++...- .++....+.. ........+.++|++. ++++ ..++.+.+|+......
T Consensus 190 yv~~~~~~~v~v~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHG-------EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred EEEecCCCEEEEEEEeCCCC-------CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 77765 89999998752100 0011111110 0111223577788763 3333 3567899997743211
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.. ......... ...+.+.++|++++++++...++.|.+|++.
T Consensus 263 ----~~-~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 263 ----VL-SFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----eE-EEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 01 111111111 2456789999999888777779999999874
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=129.33 Aligned_cols=255 Identities=20% Similarity=0.290 Sum_probs=167.4
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeee----eeecCCCCCeeEEEEcCCC--CEEEEecCCCcEEEEE
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECV----ATLEGHENEVKSVSWNASG--TLLATCGRDKSVWIWE 75 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~v~~w~ 75 (281)
...|++++|+| +..++|.|..+|+|.+||...+...+. .....|.+++..+.|..+. .-++++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 35799999999 567899999999999999765443211 2224588999999996643 4599999999999998
Q ss_pred ecCCCeeE---EeEeec------CCccceeEEEecCCCC-eEEEEecCCeEEE-EeCCCCCCCCceeeeeeeeccCCccc
Q 023500 76 VMPGNEFE---CVSVLQ------GHAQDVKMVQWHPTMD-VLFSCSYDNTIKV-WWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 76 ~~~~~~~~---~~~~~~------~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~-w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
+..-.... ...... .....+++++|.|... .++.|+++|.|.- .+-.... ... ...+.......|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~-~~~-~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP-APE-VSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc-ccc-ccccccccccccCc
Confidence 75322110 001111 2234678999998654 6889999998865 2111110 000 11111222235789
Q ss_pred cEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEE
Q 023500 145 TIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQ 221 (281)
Q Consensus 145 ~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~ 221 (281)
.|.++.++|-.. .+++++ |-++++|..+... .++..+. .+...+++++|+|- ..++++..+|.+.
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~----------~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA----------SPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCC----------Ccchhhh-hccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 999999999664 555555 8899999765221 1111111 13344889999985 5788888999999
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|++...... +... ...+....+.+.|++.++ ++++|...|.+.+|++..
T Consensus 468 iWDLl~~~~~--Pv~s-----~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQDDEE--PVLS-----QKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhhhccccC--Cccc-----ccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 9987653221 1111 112345567788888664 788999999999999853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=115.78 Aligned_cols=249 Identities=22% Similarity=0.411 Sum_probs=161.1
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCc----------eeeeeeec-CCCCCeeEEEEc-------CCCCEEEEecCC
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGD----------YECVATLE-GHENEVKSVSWN-------ASGTLLATCGRD 68 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~----------~~~~~~~~-~h~~~v~~v~~~-------~~~~~l~s~~~d 68 (281)
..+.|+|||.-|++-+.|+.+.+|+.-... ++...++. ...+.|....|- |+..++++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 357899999999999999999999842110 00000111 123567777774 667789999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccc---eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQD---VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~---v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
.-|.+||...+... +...--.|.++ ..+++|+|++..|++| ....|+++++.+.... .....++.....+..+-
T Consensus 133 ~PIh~wdaftG~lr-aSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~-c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLR-ASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD-CPVYTTVTKGKFGQKGI 209 (406)
T ss_pred Cceeeeeccccccc-cchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC-Ccchhhhhcccccccce
Confidence 99999998776532 21111224333 4589999999998874 5789999988654311 11112222223355677
Q ss_pred EEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCC-CCcEEE
Q 023500 146 IWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA-DDSVQF 222 (281)
Q Consensus 146 v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-d~~~~~ 222 (281)
+.+++|+|.. +.++.|+-...+-||.-... +++ ...+.|...|+.++|.++| .+.+|+. +..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----------~pl-~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----------RPL-QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC-----------Cce-eeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 8899999965 48888888888888754422 222 2234688899999999876 5777775 668889
Q ss_pred EecccCCCcCCccceeeeeeccCCCCC-eeEE--EEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMD-VNSV--QWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~--~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+++.... +. .....|... =..| ...|++. +|++|+.||.|++||+..
T Consensus 278 WDiR~~~~---pv-----~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 278 WDIRYSRD---PV-----YALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred Eeehhccc---hh-----hhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 97754211 11 111122221 1123 3446664 789999999999999764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-16 Score=117.69 Aligned_cols=204 Identities=15% Similarity=0.293 Sum_probs=138.4
Q ss_pred ccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCce-eeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCC
Q 023500 3 TRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 3 ~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~ 79 (281)
..++++..|+. +-+++.+.|-|.++.|||..++.. -....+-+|+++|+.|+|...+. .+++.|+||+||+||++.-
T Consensus 150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 35788889998 667899999999999999877622 22345678999999999998664 6899999999999999754
Q ss_pred CeeEEeEeecCCccceeEEEecCCC-CeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-C
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-D 156 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 156 (281)
+-...+..-.........++|+++. +++++-..| ..|.+.|+....+ .+.++ .+|++.|+.++|.|.. .
T Consensus 230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L----~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT----PVARL----RNHQASVNGIAWAPHSSS 301 (364)
T ss_pred ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc----ceehh----hcCcccccceEecCCCCc
Confidence 3211222112224556778888765 466665555 4788888765532 22233 4799999999999964 5
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcEE
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQ 221 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~ 221 (281)
.+.+|+.|....+||+..-.....+ .++..+. ....|..+.|++ ..-.++.+.++.++
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~-----dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGE-----DPILAYT--AGGEVNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred eeeecCCcceEEEEecccccccCCC-----Cchhhhh--ccceeeeeeecccCCCEEEEEecCeee
Confidence 8999999999999998632221000 1111111 356788888885 33344444444443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-15 Score=111.20 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=155.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGG--------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.|..-+++|.+++|+.|+.+|.|.+...+.- ....+....+|+++|+.++|. ..+|++|++ |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 4566689999999999999999999874321 112344558999999999997 456777765 99999976
Q ss_pred cCCCe-eEE---------eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 77 MPGNE-FEC---------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 77 ~~~~~-~~~---------~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
....+ ..+ ..+-.-.-+.|++.-..|..+-++.++.|+.++.||+++.. +....+||+..+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---------i~r~~rGHtDYv 159 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---------IQREYRGHTDYV 159 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---------EEEEEcCCccee
Confidence 53322 101 11111124678899999999988888899999999998763 333346999999
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
.++.-......+++|+.||++|+||.+..+....-+.-. .+.+.-+ .-...|-+++- +.-.+.++....+.+|..+
T Consensus 160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk-~~~~lRp-~~g~wigala~--~edWlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK-NPNLLRP-DWGKWIGALAV--NEDWLVCGGGPKLSLWHLR 235 (325)
T ss_pred eeeeecccCcceeecCCCccEEEEeccccceeEEecccc-ChhhcCc-ccCceeEEEec--cCceEEecCCCceeEEecc
Confidence 999985555678899999999999998655322111000 0000000 01223333332 3334555666678889664
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
... . ...+. -..++..+.|--+ .+++++..+.|.-|.+.
T Consensus 236 sse-----~-t~vfp----ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 236 SSE-----S-TCVFP----IPARVHLVDFVDD---CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCC-----c-eEEEe----cccceeEeeeecc---eEEEeccccceeeeeec
Confidence 321 1 11111 1234666777632 35567766667666543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=131.33 Aligned_cols=205 Identities=17% Similarity=0.280 Sum_probs=138.5
Q ss_pred cceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 023500 4 RTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 4 ~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~ 76 (281)
..|+.+.|+| |.+.||.++.||.|+||....+. ..+-+.+.+|.+.|+++.|+| ..+.|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4588999999 88899999999999999864332 234567789999999999999 6788999999999999999
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+... ...+.+|.+.|..++|+|+++.+++.+.||++++|...+.+.. ++.- ....+.+ ---+.|-.++.
T Consensus 708 ~~~~~---~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p----v~Eg-~gpvgtR--gARi~wacdgr 777 (1012)
T KOG1445|consen 708 ANAKL---YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP----VYEG-KGPVGTR--GARILWACDGR 777 (1012)
T ss_pred hhhhh---hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc----cccC-CCCccCc--ceeEEEEecCc
Confidence 87654 3457899999999999999999999999999999976554311 1111 0111111 13467777888
Q ss_pred EEEEeeCC----CcEEEEeCCccccccCCCCcccceeEEeec-c-cCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 157 KLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISG-Y-HDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 157 ~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+++..+-| ..|.+|+..... .+++....- . ....+-....+.+-++++|-.|..+.+|.+-.
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq~l~---------~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQTLD---------LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred EEEEecccccchhhhhhhhhhhcc---------CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 77766544 356666543211 111111100 0 00001111112233678888899998885543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=124.12 Aligned_cols=239 Identities=19% Similarity=0.247 Sum_probs=154.7
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCe--eEE-eEeecCCccceeEEEe
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNE--FEC-VSVLQGHAQDVKMVQW 100 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~--~~~-~~~~~~~~~~v~~v~~ 100 (281)
+.+.||+..... .+-..+. -...|.|+.|+| ++.+++.|..+|+|.+||++.... ... -.....|...+..+.|
T Consensus 222 ~~~~vW~~~~p~-~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPN-TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCC-CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 368899876542 2233333 568899999999 678899999999999999986543 111 1223468889999999
Q ss_pred cCCCCe--EEEEecCCeEEEEeCCCCCCCCceeeeeeeec----cCCccccEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 023500 101 HPTMDV--LFSCSYDNTIKVWWAEDTDSDNWHCVQTISES----NNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 101 ~p~~~~--l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~ 173 (281)
-.+..- ++++|.||.|..|+++...... .....-... .......++++.|.+. ...++.|+.+|.|.--...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPV-EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccch-hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 765444 9999999999999765432100 000000000 0012345788999874 4579999999988663222
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCee
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 251 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 251 (281)
....... ...+.+.. ...|..++.++.++|-+ .+++++ |-.+++|.... ...+. .....+...|+
T Consensus 379 g~~~~~~---~~~~~~~~-~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~---~~~Pl-----~~~~~~~~~v~ 445 (555)
T KOG1587|consen 379 GYTPAPE---VSYKGHST-FITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV---IASPL-----LSLDSSPDYVT 445 (555)
T ss_pred CCccccc---cccccccc-ccccCcceEeeecCCCccceeeeec-cceeEeccccC---CCCcc-----hhhhhccceee
Confidence 1111110 01111211 23478899999999854 455555 88999996642 11111 12233555699
Q ss_pred EEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 252 SVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 252 ~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|||.-+.+|+++..||.|.|||+..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 9999998888999999999999999864
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=122.82 Aligned_cols=268 Identities=18% Similarity=0.276 Sum_probs=178.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|+.+.|+..|..|++|+.|..+.+||....... +.-..||...|....|-|. .+-|++++.||.+++=.+...
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 7789999999999999999999999999998766533 3334689999999999883 345999999999999887655
Q ss_pred CeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc---cEEEEEEccCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS---TIWALSFNAKG 155 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~ 155 (281)
...+....+..|...|..++.-|+.. .+.+++.|+.++-.|+....... ... ....+.. ...+++.+|..
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--~~~----cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--KFV----CREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--eee----eeccCCccceeeeeEecCCCC
Confidence 54443455677889999999988765 58999999999877765432111 011 1112222 45788888876
Q ss_pred C-EEEEeeCCCcEEEEeCCccccccCCC-CcccceeEEeecccCcceEEEEeC-CCceeeecCCCCcEEEEecccCCCcC
Q 023500 156 D-KLVSCSDDLTIKIWGADITRMQSGDG-YASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 156 ~-~l~s~~~d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
. .+++++.|...++||.....-....+ +...-+-.... -....|+++.++ ..+.+++.-.|-.++++.........
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 5 89999999999999865322111111 00000111111 123457788888 45567777778788888443322211
Q ss_pred ---Cccceeeeee-ccCCC--CCeeEEEEc-CCCCeeEEEeCCCCeEEEEEcc
Q 023500 233 ---GPSYKMLLKK-EKAHD--MDVNSVQWS-PGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 233 ---~~~~~~~~~~-~~~h~--~~v~~~~~~-~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
......+.+. .++|. ..|..+-|- |.. .++++|++-|.|.||+-.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecc
Confidence 0111122222 45663 347777654 443 578899999999999854
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-15 Score=128.55 Aligned_cols=255 Identities=22% Similarity=0.298 Sum_probs=160.2
Q ss_pred ceeEEEEcC--CCCEEEEeeCCCcEEEEecCC---CceeeeeeecC-------CCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 5 TVRSCAWSP--SGKLLATASFDATTCIWEDVG---GDYECVATLEG-------HENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 5 ~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~---~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
.|+.+.+-. |..++++|+.||.|+||+... ++.+.+..+.+ -.+.-.-++|.....+|+++|+-+.|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 456666444 345889999999999998643 23344443322 112223467887666677777789999
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc--EEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST--IWAL 149 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~ 149 (281)
+||..... .+.....+-...++++.-. +.++.+++|-.||.|++||......+...+. -+.|.+. |..+
T Consensus 1191 IWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~------~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1191 IWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV------YREHNDVEPIVHL 1262 (1387)
T ss_pred EEecccce--eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee------ecccCCcccceeE
Confidence 99985432 2333333444456665433 3468999999999999998866543321111 1245555 8888
Q ss_pred EEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc-CcceEEEEeCCCc-eeeecCCCCcEEEEecc
Q 023500 150 SFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSREG-IIASGAADDSVQFFVES 226 (281)
Q Consensus 150 ~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~ 226 (281)
.+.+.|. .|++|+.||.|++||+++. ..+.+. ....... ....+++..++.. .+++|+. +.+.+|+..
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~---~~e~~~-----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMS---SKETFL-----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccC---cccccc-----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 9988664 5999999999999998753 111111 1111111 1236677667654 5555555 999999887
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+.+..-+.....+.. ....+.+++|||- +-++|.|+.|..|.||...++
T Consensus 1334 G~~l~~~k~n~~F~~q---~~gs~scL~FHP~-~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQ---RIGSVSCLAFHPH-RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhhcccccCcccccC---cCCCcceeeecch-hHhhhhccCCceEEEeecCCc
Confidence 6544322221222222 2344689999996 457888999999999987664
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=123.89 Aligned_cols=134 Identities=23% Similarity=0.455 Sum_probs=109.8
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-----CCeeEEeEeecCCccceeEEEecCCCCeEEEEecC
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-----GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-----~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
...++..|...|..++|.|....|++++.|+.+++|+++. ....+++.++.+|..+|-|+...+.+.++++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446778999999999999999999999999999999942 22346788999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCC--ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 114 NTIKVWWAEDTDSDN--WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|+|+.|.+. ....+ ......+.....||...|+.+++|+..+.|++|+.||+++.|+..
T Consensus 366 g~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 366 GTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999999765 21111 111222333345899999999999999999999999999999764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=115.05 Aligned_cols=203 Identities=13% Similarity=0.229 Sum_probs=141.8
Q ss_pred CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCC
Q 023500 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 46 h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~ 124 (281)
..+.|+++.|+|....++++|.|+++++|-+..... ..+..+.--.-+|.++.|.|++. .+++++.-.-.+.||++..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 347899999999999999999999999999853322 23333333356799999999999 8999999999999999765
Q ss_pred CCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 125 DSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
.... +.. ..++. ..+.....+|++.+++..+..|.|.+-..+.+.. +.++. ....+..+
T Consensus 291 k~~k------~~~-~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-----------i~s~K--ieG~v~~~ 350 (514)
T KOG2055|consen 291 KVTK------LKP-PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-----------ITSFK--IEGVVSDF 350 (514)
T ss_pred cccc------ccC-CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----------hheee--eccEEeeE
Confidence 4222 211 12332 2345567789999999999999999986654321 22222 35667788
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.|+.++ .+++++.+|.+.+|+++.. ......+-....| -++++.++++. +||+|+.-|.|.|||..
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~v~---gts~~~S~ng~-ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGSVH---GTSLCISLNGS-YLATGSDSGIVNIYDGN 417 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCccc---eeeeeecCCCc-eEEeccCcceEEEeccc
Confidence 888665 5777788889999977542 2222222222222 35566677665 79999999999999954
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-13 Score=110.10 Aligned_cols=243 Identities=11% Similarity=0.128 Sum_probs=145.9
Q ss_pred EEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 18 LATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+++...|+.|.+|+..+ ++...+..+. +.+....++++|++++|+.+ ..++.|.+|++........+.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 45557789999999853 4444555554 34667789999999988665 458899999996332222222222 22345
Q ss_pred eEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-EeeCCCcEEEEeCC
Q 023500 96 KMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGAD 173 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~ 173 (281)
..+.++|+++.+++++. ++.|.+|+++..... ...+..+ .+...+..++++|++++++ +...++.|.+||++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~-----~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIP-VAPIQII-----EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC-CCceeec-----cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 78999999998887765 789999988632110 0111111 1123356788999998775 55567899999986
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCCcEEEEecccCCCcCCccceee--eee---ccCC
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADDSVQFFVESKDDLIDGPSYKML--LKK---EKAH 246 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~h 246 (281)
......... ....... .......+.++|++. + ++...++.+.+|+..... + ..... ... ...+
T Consensus 157 ~~g~l~~~~----~~~~~~~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~---~-~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 157 DDGHLVAQE----PAEVTTV--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH---G-EIECVQTLDMMPADFSD 226 (330)
T ss_pred CCCcccccC----CCceecC--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC---C-CEEEEEEEecCCCcCCC
Confidence 321110000 0000000 122345678888764 3 333347899999875310 0 00111 100 0112
Q ss_pred CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
......+.++|++++++++...++.|.+|++.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 22344688999998877766678999999984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=121.98 Aligned_cols=179 Identities=21% Similarity=0.372 Sum_probs=128.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+-.|+|||.-|+|.++||.|++|...+-- -.++-....+|+|++|.|++..++-+.. +++.+=.+...
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---RStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n-- 176 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---RSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN-- 176 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccchH---HHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc--
Confidence 67788899999999999999999999999754421 1233446789999999998766554433 34444344322
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+-.+++|.+-|-++.|+|..+++++|++|...++||..... +. ....|..++++++|+|+ +.++.+
T Consensus 177 -~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---------Lf-~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 177 -SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---------LF-TSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred -cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc---------cc-cCChhccceeeeeeccc-cceeee
Confidence 2345688999999999999999999999999999999754321 11 12368889999999999 556655
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec-CCCCcEEE
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-AADDSVQF 222 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~~~~ 222 (281)
+.. ++|+ .......|+.++|+++|.-+++ ...|.+.+
T Consensus 245 S~n-t~R~-----------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYN-TARF-----------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeee-----------------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 532 3331 1123567899999999865544 45665544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=122.28 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=136.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~ 77 (281)
|...+...+|+|||+.||.++.+ ..|.+||..+++...+..+.+|. ..++|+|||++|+.++ .++.+.+|.+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 34568899999999999887754 36999998777655555555443 4689999999887764 68877776543
Q ss_pred C-CCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 78 P-GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
. +.. ...+..+...+..+.|+|++..++.++ .++...+|.++..... ...+ .+.. ....|+|++
T Consensus 279 ~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l-----~~~~--~~~~~SpDG 344 (429)
T PRK01742 279 ANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLV-----GGRG--YSAQISADG 344 (429)
T ss_pred CCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-----cCCC--CCccCCCCC
Confidence 2 122 233455666688999999999766555 5788888876432211 1111 1222 346899999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
+.|+..+.++ +..||...+... .+. ... ......|+|++ +++.++.++...+|.... .++.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~---------~lt--~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~---~~G~ 406 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTE---------VLS--STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVS---ADGR 406 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeE---------Eec--CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEE---CCCC
Confidence 9998887766 445877543211 000 011 12345688887 455555677666664321 0111
Q ss_pred cceeeeeeccCCCCCeeEEEEcCC
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
.......|...+...+|+|-
T Consensus 407 ----~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 ----FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ----ceEEccCCCCCCCCcccCCC
Confidence 12233467778888999984
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-15 Score=109.64 Aligned_cols=255 Identities=18% Similarity=0.234 Sum_probs=161.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|+++.|..+++ |.+|..-|.+.+|+..+.... ..+. .|...|+.+..-|+ ..+.+=+.|..+.+|++..+.
T Consensus 13 ~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~--~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 13 HSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL--PLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred ccchheehhhccchh-hhcccccceEEEEEeecCccc--hhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 566788888887776 668999999999998776533 3445 45678888887776 678899999999999985321
Q ss_pred eeE-----------EeEee---------------------------------------cCCccceeEEEecC-CCC--eE
Q 023500 81 EFE-----------CVSVL---------------------------------------QGHAQDVKMVQWHP-TMD--VL 107 (281)
Q Consensus 81 ~~~-----------~~~~~---------------------------------------~~~~~~v~~v~~~p-~~~--~l 107 (281)
... |...+ .+..+-+.|..|.- .+. ++
T Consensus 89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ll 168 (323)
T KOG0322|consen 89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLL 168 (323)
T ss_pred eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEE
Confidence 100 00000 00011122332211 122 46
Q ss_pred EEEecCCeEEEEeCCCCCCC-CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCccc
Q 023500 108 FSCSYDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186 (281)
Q Consensus 108 ~s~s~d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~ 186 (281)
++|-++|.+-+||+...+-. .....-........|..+|.+++|.+.-..=++|+.+-.+..|+++-...... .
T Consensus 169 laGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq-----~ 243 (323)
T KOG0322|consen 169 LAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ-----I 243 (323)
T ss_pred EEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc-----c
Confidence 78889999999999765210 00000011112235889999999987666667788888888887642111000 0
Q ss_pred ceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEE
Q 023500 187 RHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 265 (281)
+...... ...+..+..-++ .++++++.|+++|+|..+.... +...+.|...|++++|+|+. .++|.
T Consensus 244 ~~e~~lk---npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p---------LAVLkyHsagvn~vAfspd~-~lmAa 310 (323)
T KOG0322|consen 244 RKEITLK---NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP---------LAVLKYHSAGVNAVAFSPDC-ELMAA 310 (323)
T ss_pred cceEEec---CCCccceEEccCCcEEeecccCCcEEEEEeccCCc---------hhhhhhhhcceeEEEeCCCC-chhhh
Confidence 1111111 112223333444 4788999999999998765321 23456799999999999974 58999
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
+|.|+.|-+|++.
T Consensus 311 askD~rISLWkLY 323 (323)
T KOG0322|consen 311 ASKDARISLWKLY 323 (323)
T ss_pred ccCCceEEeeecC
Confidence 9999999999974
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=119.61 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=164.7
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCC-----CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
|...|..++.++ .+.+|+|||.||+|++|+... +...+..++..-...+.++..-+.++.+|.++.||.|.+.+
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 556677777766 459999999999999998532 22222334443457888999999999999999999999998
Q ss_pred ecCCCe--eE--EeE---------------------------e---------------------ecCCccceeEEEecCC
Q 023500 76 VMPGNE--FE--CVS---------------------------V---------------------LQGHAQDVKMVQWHPT 103 (281)
Q Consensus 76 ~~~~~~--~~--~~~---------------------------~---------------------~~~~~~~v~~v~~~p~ 103 (281)
+...+. .. +.+ . .....+.|++++.+|.
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence 864110 00 000 0 0112356889999999
Q ss_pred CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc---CCCEEEEee--CCCcEEEEeCCccccc
Q 023500 104 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA---KGDKLVSCS--DDLTIKIWGADITRMQ 178 (281)
Q Consensus 104 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~--~d~~i~~w~~~~~~~~ 178 (281)
++.+++|+..|.+-+||+.-... +.... -++..++..+..+| .....++++ ..+.+.+|++..+.++
T Consensus 1207 ~~WlviGts~G~l~lWDLRF~~~-----i~sw~---~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRFRVP-----ILSWE---HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred ceEEEEecCCceEEEEEeecCce-----eeccc---CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 99999999999999998865421 11111 12345555555554 233444443 4678999987654322
Q ss_pred cC----CCCcccceeEEee----cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCc-------------------
Q 023500 179 SG----DGYASWRHLCTIS----GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI------------------- 231 (281)
Q Consensus 179 ~~----~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------------------- 231 (281)
.. ++...+....... ......+.+.-..+++.+++|++|..+|.|+.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 11 0111111000000 00112233444456789999999999999975421110
Q ss_pred ----CCccc-------------e-----ee-e-----eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 232 ----DGPSY-------------K-----ML-L-----KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 232 ----~~~~~-------------~-----~~-~-----~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+... . .. . .....|-.+|+++++....+.++++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00000 0 00 0 011346778999998887777999999999999995
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=103.93 Aligned_cols=148 Identities=20% Similarity=0.397 Sum_probs=100.3
Q ss_pred EEEEcCCCCEEEEeeC---C-------CcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEE--ecCCCcEEEE
Q 023500 8 SCAWSPSGKLLATASF---D-------ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLAT--CGRDKSVWIW 74 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~---d-------~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s--~~~d~~v~~w 74 (281)
.+.|+|+|++|+.-.. | +...||....... .+..+. ...++|.+++|+|+|+.++. |..+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4679999997754332 1 2355555432221 122322 23457999999999998644 4567899999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
|+. . +.+..+. ...++.+.|+|++++++.++.+ |.+.+||++.. +.+.+. .| ..+..++|
T Consensus 89 d~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~-----~~-~~~t~~~W 151 (194)
T PF08662_consen 89 DVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTF-----EH-SDATDVEW 151 (194)
T ss_pred cCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeecc-----cc-CcEEEEEE
Confidence 995 2 2334443 4567899999999999988754 56999988743 223222 23 34789999
Q ss_pred ccCCCEEEEeeC------CCcEEEEeCC
Q 023500 152 NAKGDKLVSCSD------DLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~------d~~i~~w~~~ 173 (281)
+|+|++|+++.. |..++||+..
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999999874 6778889765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=121.10 Aligned_cols=235 Identities=19% Similarity=0.253 Sum_probs=149.4
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEE
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIK 117 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~ 117 (281)
-+.+.||.+.|+|+.|+.+|.+|++||+|-.+.|||...-+. ....-.+|...|.+++|-|. ..++++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 457789999999999999999999999999999999763332 22344689999999999995 44799999999999
Q ss_pred EEeCCCCCCCC-ceeeeeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCcc--ccccCCCCcccceeEEee
Q 023500 118 VWWAEDTDSDN-WHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADIT--RMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 118 ~w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~ 193 (281)
++|+.+..... -...........-|...|..++--|.+ ..+-+++.||+++=+|++-. ..+...........+.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-- 198 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-- 198 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch--
Confidence 99987531110 000111111223588899999998887 68999999999999987531 1110000000000000
Q ss_pred cccCcceEEEEeCCCceeeecCCCCcEEEEecccCC-------CcCCccce---eeeeeccCCC--------CC---eeE
Q 023500 194 GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD-------LIDGPSYK---MLLKKEKAHD--------MD---VNS 252 (281)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~h~--------~~---v~~ 252 (281)
..-+.....|+.+...+++.|++|...++|+.+... .......+ .......+|. .. .+-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 001112233444556789999999999999833210 00111000 0011111221 12 456
Q ss_pred EEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 253 VQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+|+|..+|++-+. ..|.++++..
T Consensus 279 vtfnpNGtElLvs~~g-EhVYlfdvn~ 304 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGG-EHVYLFDVNE 304 (758)
T ss_pred EEECCCCcEEEEeeCC-eEEEEEeecC
Confidence 8899999888877653 4688888764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-13 Score=116.60 Aligned_cols=249 Identities=18% Similarity=0.314 Sum_probs=158.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC---CCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC-
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG---HENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG- 79 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~- 79 (281)
-..+.|+|=...++++..--.|++||...++. +..|.. ....|..+.+-. |..++++|+.||.||+|+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCce--eccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34567888778888877667899999876642 333332 234677887743 4567999999999999974322
Q ss_pred -CeeEEeEee---cCC----ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 80 -NEFECVSVL---QGH----AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 80 -~~~~~~~~~---~~~----~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+..+.+..+ .++ .+.-..+.|.....+|++++.-..|+|||..... ++..+. .+....|+++.=
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~-----~~~diP---~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ-----VVADIP---YGSSTLVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce-----eEeecc---cCCCccceeecc
Confidence 222222222 111 1112455788877788888888999999887542 222221 223344555543
Q ss_pred c-cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc--eEEEEeCCCc--eeeecCCCCcEEEEecc
Q 023500 152 N-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT--IFSVHWSREG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 152 ~-~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~--~~~~~~~d~~~~~~~~~ 226 (281)
+ +.|..++.|..||.+++||.++..+... .+. ..-|... |..+++.++| .+++|+.||.+++|+++
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~--------v~~-~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSL--------VCV-YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCcccc--------cee-ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 3 3468999999999999999876443211 111 1123333 7777776655 58999999999999876
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... .+...... ....+.++++..|+..+ ++|||+. +.|+||++.-
T Consensus 1288 ~~~~e---~~~~iv~~-~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1288 MSSKE---TFLTIVAH-WEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred cCccc---ccceeeec-cccCccceeeeeccCCC-eeeecCc-ceEEEEecCh
Confidence 53111 11111111 11123589999999765 7899988 9999999753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=107.73 Aligned_cols=194 Identities=19% Similarity=0.344 Sum_probs=138.2
Q ss_pred CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee
Q 023500 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 60 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
..++++-..++|+++|...++. +..++++.+.++.++|.. ....+.+|+.||+|++||+....... .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-----~~~- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-----RIS- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-----hee-
Confidence 4678888889999999876543 556778888888888876 45679999999999999987653221 111
Q ss_pred ccCCcc-ccEEEEEEccCCCEEEEee----CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ce
Q 023500 138 SNNGHS-STIWALSFNAKGDKLVSCS----DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GI 210 (281)
Q Consensus 138 ~~~~h~-~~v~~~~~~~~~~~l~s~~----~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 210 (281)
..+++ .+-.+++.+..+..+++|. .+..+.+||.+..+.. +..+...|...|+++.|+|+ .+
T Consensus 112 -~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 112 -WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----------LRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred -ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch----------hhhhhhhccCcceeEEecCCCCCe
Confidence 12333 4456777666666777765 4668899998754321 22333458889999999985 58
Q ss_pred eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 211 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|+.||.+.+|+.+.++..+ . +...-.|...|..+.|..++..-+.+-+..+...+|++.-
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeD--a----L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEED--A----LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred EEeecccceEEeeecCCCcchh--h----HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 9999999999999987652211 1 1112246677999999987743477888999999999753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=106.80 Aligned_cols=160 Identities=18% Similarity=0.276 Sum_probs=117.9
Q ss_pred cceeEEEEcC-CCC--EEEEeeCCCcEEEEecCCCce--------eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 4 RTVRSCAWSP-SGK--LLATASFDATTCIWEDVGGDY--------ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 4 ~~i~~~~~~~-~~~--~l~tg~~d~~i~lw~~~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
+.+.+..+.. .+. +++.|-++|.+.+||..+++. +.......|..+|.++.+.+.-..=++||.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3456666444 233 567888999999999877521 11223456999999999988766778999999999
Q ss_pred EEEecCC-CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 73 IWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 73 ~w~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+|++... ...+......-....|..+..-||++.++++++|+.|++|...+.+ .+. -.+-|.+.|++++|
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--------pLA-VLkyHsagvn~vAf 301 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--------PLA-VLKYHSAGVNAVAF 301 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC--------chh-hhhhhhcceeEEEe
Confidence 9998754 2222112222234568889999999999999999999999554432 221 12358899999999
Q ss_pred ccCCCEEEEeeCCCcEEEEeC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~ 172 (281)
+|+...++.++.|+.|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999964
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=110.62 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=114.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeee-eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVA-TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFE 83 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~-~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~ 83 (281)
..+.+++.|++....-++ .+.+|....+.. .+.. .-..|...++|.+++|+++++++|..||.|.+|.=.. .....
T Consensus 164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 457788888877665544 466776654321 1111 1124778899999999999999999999999997432 22222
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
....+.=|...|.++.|+++|.+|+||+.++.+-+|..++.. .+.+.++ .+++..+.++||+++.+.+..
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---kqfLPRL-------gs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---KQFLPRL-------GSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC---ccccccc-------CCeeEEEEEcCCCCeEEEEec
Confidence 234455588899999999999999999999999999877653 2222222 377899999999999999999
Q ss_pred CCcEEEEeC
Q 023500 164 DLTIKIWGA 172 (281)
Q Consensus 164 d~~i~~w~~ 172 (281)
|..|.+...
T Consensus 313 DNqI~li~~ 321 (792)
T KOG1963|consen 313 DNQIHLIKA 321 (792)
T ss_pred CceEEEEec
Confidence 999988754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-15 Score=127.67 Aligned_cols=160 Identities=25% Similarity=0.428 Sum_probs=117.7
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
++.+.+|...|+|+.|...|+++++|++|..++||...+. .+.....||...|+.++.+.....++++|.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 4456689999999999999999999999999999996443 4678889999999999999988899999999999999
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
....... + .-..+|++.|++++|+|-. +.+.||++++||.+.......- ++. .......
T Consensus 260 rl~~~~p-----v----svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p-----rp~---~~~~~~~ 318 (1113)
T KOG0644|consen 260 RLPDGAP-----V----SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP-----RPL---KFTEKDL 318 (1113)
T ss_pred ecCCCch-----H----HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCC-----CCC---Ccccccc
Confidence 7655421 1 1224899999999999975 6788999999998632211110 000 0001233
Q ss_pred eEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 200 IFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 200 v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
+.++.+...+ -+++++.|+..+.|
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~ 343 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNH 343 (1113)
T ss_pred eeeeeccccccccccccCCcccccc
Confidence 4445554444 36777777766665
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-12 Score=99.14 Aligned_cols=156 Identities=16% Similarity=0.227 Sum_probs=114.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCCCCEEEE-e-cCCCcEEEEEecCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGTLLAT-C-GRDKSVWIWEVMPG 79 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s-~-~~d~~v~~w~~~~~ 79 (281)
+|.++.++ .++|+.+-++. |.|||..+-+ .++++. .+...+.++++++.+.+++- + -.-|.|.+||+.+-
T Consensus 89 ~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRMN--RKRLVVCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEEc--cceEEEEEccc-EEEEecccce--eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45555554 44666655554 9999987653 455544 35556767777766677763 2 24589999998644
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE-EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI-KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
++...+.+|.+.+-+++|+|+|.++|++|+.|+| ||+.+.+.. .+.++.... -...+.+++|+|++++|
T Consensus 164 ---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~-----kl~eFRRG~--~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 164 ---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-----KLYEFRRGT--YPVSIYSLSFSPDSQFL 233 (391)
T ss_pred ---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-----EeeeeeCCc--eeeEEEEEEECCCCCeE
Confidence 3467788999999999999999999999999976 899876542 334443222 14568899999999999
Q ss_pred EEeeCCCcEEEEeCCcc
Q 023500 159 VSCSDDLTIKIWGADIT 175 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~ 175 (281)
.+.+..++|.+|.++..
T Consensus 234 ~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKV 250 (391)
T ss_pred EEecCCCeEEEEEeccc
Confidence 99999999999977643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-12 Score=93.38 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=128.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce----eeeeee--cCC-----CCCeeEEEEcCCCCEEEEecCCCc
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY----ECVATL--EGH-----ENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~----~~~~~~--~~h-----~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
|..+|..++|+ .++|++|+ ||.++=|....... +.+-.. --| .-.|+++...|..+-++.++.|+.
T Consensus 61 hdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~ 137 (325)
T KOG0649|consen 61 HDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV 137 (325)
T ss_pred cCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE
Confidence 78899999998 55666665 69999887543211 000000 012 246889999998777777779999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc-----CCcc-c
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN-----NGHS-S 144 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~-----~~h~-~ 144 (281)
+.-||+..++ ..+++++|.+.+.++.--.....+++|++||++++||..+.. ++..+.... +.|. .
T Consensus 138 ~y~~dlE~G~---i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k-----~v~~ie~yk~~~~lRp~~g~ 209 (325)
T KOG0649|consen 138 IYQVDLEDGR---IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK-----HVSMIEPYKNPNLLRPDWGK 209 (325)
T ss_pred EEEEEecCCE---EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc-----eeEEeccccChhhcCcccCc
Confidence 9999998775 467899999999999886666789999999999999876542 343333221 2222 2
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
.+-+++- +.+.|+.|+ ...+.+|.+... ...+.++ -..++..+.|..+ .+++++..+-++-|.
T Consensus 210 wigala~--~edWlvCGg-Gp~lslwhLrss-----------e~t~vfp--ipa~v~~v~F~~d-~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 210 WIGALAV--NEDWLVCGG-GPKLSLWHLRSS-----------ESTCVFP--IPARVHLVDFVDD-CVLIGGEGNHVQSYT 272 (325)
T ss_pred eeEEEec--cCceEEecC-CCceeEEeccCC-----------CceEEEe--cccceeEeeeecc-eEEEeccccceeeee
Confidence 3444443 455676554 557999987532 2223332 2345666666544 455566666677775
Q ss_pred cc
Q 023500 225 ES 226 (281)
Q Consensus 225 ~~ 226 (281)
..
T Consensus 273 l~ 274 (325)
T KOG0649|consen 273 LN 274 (325)
T ss_pred ec
Confidence 44
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-13 Score=112.45 Aligned_cols=212 Identities=15% Similarity=0.198 Sum_probs=128.0
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEe
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW 100 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~ 100 (281)
+..|.+||..+.. ...+..|...+...+|+|+|++|+..+.+ ..|++||+..+.. ..+..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCceeE
Confidence 4689999876543 23456678889999999999999887654 3699999865532 233334444 346899
Q ss_pred cCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccc
Q 023500 101 HPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQ 178 (281)
Q Consensus 101 ~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~ 178 (281)
+|+++.|+.++ .++.+.||.++.... ....+. .+...+....|+|+++.|+..+ .++..++|+++.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGG----TPSQLT----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCC----CeEeec----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99999877654 688776664322110 112221 3445577899999999766544 6788999976432110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
.... . +.. ....|+|++. ++..+.++ +..|+...+. . .. +. ..+ ......|+|
T Consensus 328 ----------~~~l-~-~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~-----~-~~-lt--~~~--~~~~~~~sP 381 (429)
T PRK01742 328 ----------ASLV-G-GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS-----T-EV-LS--STF--LDESPSISP 381 (429)
T ss_pred ----------eEEe-c-CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC-----e-EE-ec--CCC--CCCCceECC
Confidence 0011 1 111 2356788764 44444444 4446543321 1 11 11 111 234578999
Q ss_pred CCCeeEEEeCCCCeEEEEEc
Q 023500 258 GERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~~ 277 (281)
+++ +|+.++.++..++|.+
T Consensus 382 dG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 382 NGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCC-EEEEEEcCCCceEEEE
Confidence 986 4666777888888775
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-14 Score=114.03 Aligned_cols=138 Identities=20% Similarity=0.366 Sum_probs=99.8
Q ss_pred ccceeEEEEcCCC-CEEEEeeCCCcEEEEecCC---------------Ccee-----------eeeeecCCCCCeeEEEE
Q 023500 3 TRTVRSCAWSPSG-KLLATASFDATTCIWEDVG---------------GDYE-----------CVATLEGHENEVKSVSW 55 (281)
Q Consensus 3 ~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~---------------~~~~-----------~~~~~~~h~~~v~~v~~ 55 (281)
+..|+|+.|-|-+ ..++.+-.+|.+.+||..- ..+. ++..+.--.+.|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4679999999954 4566677889999996321 0111 11111112357889999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 56 ~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
+|||++||+.|+||.+|||+..... .+.+.+..-....||+|+||+++|++|++|.-|.||-+.+.+ .+.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR-----VVA-- 368 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR-----VVA-- 368 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHH---HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce-----EEE--
Confidence 9999999999999999999985332 223333445678999999999999999999999999766432 222
Q ss_pred eeccCCccccEEEEEEc
Q 023500 136 SESNNGHSSTIWALSFN 152 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~ 152 (281)
...+|+..|..++|.
T Consensus 369 --RGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 369 --RGQGHKSWVSVVAFD 383 (636)
T ss_pred --eccccccceeeEeec
Confidence 224899999999987
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-12 Score=113.23 Aligned_cols=231 Identities=14% Similarity=0.175 Sum_probs=141.4
Q ss_pred eeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC----CeeEEeEeecCCccceeEEEecCCCCeEEEEec
Q 023500 38 ECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG----NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
..++++..|...|..++.++. +.+++|||.||+||+|+++.- ....+..++..-...+.++...+.++.+|.++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 457888899999999988774 599999999999999998632 122233334334567889999999999999999
Q ss_pred CCeEEEEeCCCCCCCCceee-------------eeeee------c---------------------------cCCccccE
Q 023500 113 DNTIKVWWAEDTDSDNWHCV-------------QTISE------S---------------------------NNGHSSTI 146 (281)
Q Consensus 113 d~~v~~w~~~~~~~~~~~~~-------------~~~~~------~---------------------------~~~h~~~v 146 (281)
||.|.+..++........+. ..... . .....+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998876211100000 00000 0 00113679
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--C--c-eeeecC-CCCcE
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E--G-IIASGA-ADDSV 220 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~-~~~~~~-~d~~~ 220 (281)
++++.+|.+..+++|...|.+.+||++.+-+. .+| ...+..++..+...+ . . .+.++. ..+.+
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i-----~sw------~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-----LSW------EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCcee-----ecc------cCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 99999999999999999999999998754321 112 111234444443332 1 2 344444 56777
Q ss_pred EEEecccCCCcC----C---ccceeeeeec---cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 221 QFFVESKDDLID----G---PSYKMLLKKE---KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 221 ~~~~~~~~~~~~----~---~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+|....+.... + +......... +.+......+.+...+ .++.+|+.|..||.||...+
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCc
Confidence 788554431100 0 0000000000 0122223334444433 46789999999999998764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-11 Score=95.79 Aligned_cols=149 Identities=28% Similarity=0.539 Sum_probs=103.0
Q ss_pred ccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCC----c------eee--eeeecCCCCCeeEEEEcCCCCEEEEecC-C
Q 023500 3 TRTVRSCAWSPS-GKLLATASFDATTCIWEDVGG----D------YEC--VATLEGHENEVKSVSWNASGTLLATCGR-D 68 (281)
Q Consensus 3 ~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~----~------~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d 68 (281)
++.|++++|-|- ++-|+.|+..| |+||..... . --+ +....|| -+|++++|++||..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 478999999994 56788888655 889974321 0 001 1222344 68999999999999999884 6
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
..|++||...+... ++. ...-+.+.-++|+|++.++++++-|+..++|..... |.+.+... -.+.|+.
T Consensus 218 ssi~iWdpdtg~~~-pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~----wt~erw~l-----gsgrvqt 285 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKI-PLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS----WTKERWIL-----GSGRVQT 285 (445)
T ss_pred ceEEEEcCCCCCcc-ccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhccc----ceecceec-----cCCceee
Confidence 79999998765432 111 123456889999999999999999999999944322 22222221 1347999
Q ss_pred EEEccCCCE-EEEeeCCC
Q 023500 149 LSFNAKGDK-LVSCSDDL 165 (281)
Q Consensus 149 ~~~~~~~~~-l~s~~~d~ 165 (281)
..|+|.|.. |++++.+.
T Consensus 286 acWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSP 303 (445)
T ss_pred eeecCCCCEEEEEEcCCc
Confidence 999999985 44555443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=113.42 Aligned_cols=94 Identities=27% Similarity=0.404 Sum_probs=79.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+..|+..+|+|||++||+.+.||.++|++..+.. .+..++.+=+...|++|||||++|++||.|.-|.||.+...
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--- 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence 3578899999999999999999999999876543 34555666788999999999999999999999999998543
Q ss_pred EEeEeecCCccceeEEEec
Q 023500 83 ECVSVLQGHAQDVKMVQWH 101 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~ 101 (281)
..+..-.+|.+.|..|+|.
T Consensus 365 RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEeccccccceeeEeec
Confidence 3455567899999999987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=97.79 Aligned_cols=109 Identities=24% Similarity=0.514 Sum_probs=82.1
Q ss_pred cceeEEEEcCCCCEEEE--eeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLAT--ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMP 78 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~t--g~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~ 78 (281)
.+|.+++|+|+|+.||. |..++.+.|||... +.+..+. ...++.+.|+|+|++|+.+|.+ |.|.+||+..
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 46999999999997654 44667999999853 3345543 5677899999999999988754 5799999973
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEec------CCeEEEEeCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAE 122 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~------d~~v~~w~~~ 122 (281)
. +.+... +...++.++|+|++.++++++. |+.++||+..
T Consensus 135 ~---~~i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 135 K---KKISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred C---EEeecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3 233332 2335789999999999988775 6788888664
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-12 Score=97.91 Aligned_cols=181 Identities=20% Similarity=0.343 Sum_probs=122.3
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCee-
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEF- 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~- 82 (281)
.+..++|++--.-||.+.+|-.|++|+.+......++. .-...|+|++|.|. +.-|+.|+..| |.+|........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks--~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS--VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc--hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 46778999865667899999999999876532221222 23478999999994 56777777754 889987532111
Q ss_pred E--------E--eEeecCCccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 83 E--------C--VSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 83 ~--------~--~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
. + +....+| ..|++++|++++..++++|.+ ..|.+||++.....+ ... ...+.+.-+.|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-----L~~----~glgg~slLkw 246 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-----LIP----KGLGGFSLLKW 246 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-----ccc----cCCCceeeEEE
Confidence 0 1 1223455 469999999999999998876 588999887654211 111 11355788999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 210 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (281)
|||+++|....-|+..++|.... .|....-. .....+...+|+|+|.
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q----------~wt~erw~--lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQ----------SWTKERWI--LGSGRVQTACWSPCGS 293 (445)
T ss_pred cCCCCEEEEecccceeeeehhcc----------cceeccee--ccCCceeeeeecCCCC
Confidence 99999999999999999995321 11111111 1234678889999884
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=104.43 Aligned_cols=129 Identities=13% Similarity=0.237 Sum_probs=100.3
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC---CeeEEeEeec-CCccceeEEEecCCCCeEEEEecCC
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG---NEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~---~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
+.+.+.+|.+.|+++.|+.++++|++||+|..+++|.+..- +..+++.... .|.+.|.|++|......+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 44566789999999999999999999999999999997421 1112333322 3568999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+|...|+++... +.-.. ....++.|..+..+|....|++.+.++.+.+||..-
T Consensus 128 ~VI~HDiEt~qs-----i~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 128 TVIKHDIETKQS-----IYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred eeEeeeccccee-----eeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 999999887532 11111 012345899999999988999999999999998763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-11 Score=96.74 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=155.9
Q ss_pred ceeEEEEcCCCC--EEEEeeCCCcEEEEecCCCceee----eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 5 TVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYEC----VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 5 ~i~~~~~~~~~~--~l~tg~~d~~i~lw~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.|..++|.-+++ ++...+.|..+..++........ +.+.....+.|..++. ....|++|-.+|.+.+|....
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEeccC
Confidence 455666766554 56555567667666543332111 1122334455555443 234678888889999999874
Q ss_pred CCee-EEeEeecCCccceeEEEecCCCCe-EEEEecC--CeEEEEeCCCCCCCCceeeeeeeecc-CCccccEEEEEEcc
Q 023500 79 GNEF-ECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD--NTIKVWWAEDTDSDNWHCVQTISESN-NGHSSTIWALSFNA 153 (281)
Q Consensus 79 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d--~~v~~w~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~ 153 (281)
+..- .....+..+ +.+..+.-+|.... +++|+.. ..+++|+.+.. ...|..---..... -.-+-.++.+.|-+
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecC
Confidence 4310 112223222 44666666676655 5568888 78999988754 11110000000000 01134456888887
Q ss_pred C--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 154 K--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 154 ~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
. ...|++|+.-+.+++||+.-.. ++...+ .+.+.++.++...|++ .+.++..-+.+..|+.+..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qR----------RPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-- 279 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQR----------RPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-- 279 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccC----------cceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCc--
Confidence 6 7899999999999999986322 333333 3457788888888875 5677777788888865442
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.......+-.+.|+++..+|.. +++++||.|..|||+|+.+
T Consensus 280 ------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 280 ------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 22333355667889999999975 4799999999999999876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=96.95 Aligned_cols=270 Identities=15% Similarity=0.243 Sum_probs=162.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCC---CceeeeeeecCCC------------CCeeEEEEcCCCC--EEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVG---GDYECVATLEGHE------------NEVKSVSWNASGT--LLATCG 66 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~---~~~~~~~~~~~h~------------~~v~~v~~~~~~~--~l~s~~ 66 (281)
+.|.++.|..+|.+||||..+|-+.++.... +++.....++.|. +.|+.+.|.+++. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 6789999999999999999999999997532 2222333444444 4578889987654 466777
Q ss_pred CCCcEEEEEecCCCeeE--------------------------------EeEee-cCCccceeEEEecCCCCeEEEEecC
Q 023500 67 RDKSVWIWEVMPGNEFE--------------------------------CVSVL-QGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~--------------------------------~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
.|++|++|.+....... |.+++ .+|..-|+++.++.+...+++ +.|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-ADD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-ccc
Confidence 89999999986322110 11111 368888999999999998888 457
Q ss_pred CeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCcccc-c----cCCCCccc
Q 023500 114 NTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRM-Q----SGDGYASW 186 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~-~----~~~~~~~~ 186 (281)
=.|.+|.++-.+. .+. +..+.. ....-+..|++..|+|.. ..|+-.+..|+|++.|++.... . ..+....
T Consensus 185 LRINLWnlei~d~-sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped- 261 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ-SFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED- 261 (433)
T ss_pred eeeeeccccccCC-cee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC-
Confidence 7999998765431 111 111100 000114567889999964 5677778899999998862210 0 0000000
Q ss_pred ceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCc-CCccceeee----eeccCC--CCCeeEEEEcCCC
Q 023500 187 RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI-DGPSYKMLL----KKEKAH--DMDVNSVQWSPGE 259 (281)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~h--~~~v~~~~~~~~~ 259 (281)
.....+...-...|..+.|+.+|.++..=.-.++.+|+...+... .....+... +..... -..--.+.|+-++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 000000001134566788999987766555578999988543211 000000000 000000 1122357898776
Q ss_pred CeeEEEeCCCCeEEEEEcc
Q 023500 260 RRLLASASDDGMIKIWELA 278 (281)
Q Consensus 260 ~~~~~s~~~Dg~v~iw~~~ 278 (281)
. .++|||.....++++..
T Consensus 342 ~-~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 342 S-YVMTGSYNNVFRVFNLA 359 (433)
T ss_pred c-eEecccccceEEEecCC
Confidence 5 57899999999999854
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=115.77 Aligned_cols=148 Identities=21% Similarity=0.379 Sum_probs=119.5
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ 89 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~ 89 (281)
.++++.=++++|+.-+.|.+|+..... .+. .+.||++.+..+.|+-||+++++.|+|+++|+|++.+.+... .+.-
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~f 215 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGF 215 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccc
Confidence 345555588999999999999987333 223 578999999999999999999999999999999997665422 3566
Q ss_pred CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 90 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 90 ~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
+|...+..+.|+|. .++++++|.++++|..+... ++.. .+| ...++.++..++.-..+|++.||.++
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~---------l~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ---------LEVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccce---------ehhh-hhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 89999999999998 99999999999999655432 1111 233 35689999999988999999999999
Q ss_pred EEeCC
Q 023500 169 IWGAD 173 (281)
Q Consensus 169 ~w~~~ 173 (281)
+|+..
T Consensus 284 ~~~l~ 288 (967)
T KOG0974|consen 284 LWDLN 288 (967)
T ss_pred hhhhh
Confidence 99864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=105.06 Aligned_cols=222 Identities=15% Similarity=0.217 Sum_probs=148.8
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceee-------------------------------------eeeecCCCCC
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYEC-------------------------------------VATLEGHENE 49 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~-------------------------------------~~~~~~h~~~ 49 (281)
..+.++.+|++|+.|+.-|.+..+|..+...-+ ++-++. ...
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~-~~~ 211 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR-HIR 211 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh-cCc
Confidence 357788899999999988988888765542111 111111 134
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc
Q 023500 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129 (281)
Q Consensus 50 v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~ 129 (281)
|..+.|-|..-+|++++..|-++.-|+..++. +..+......+...+-+|-...+-.|...|+|.+|......
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske---- 284 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE---- 284 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc----
Confidence 66678889888899999999999999977653 34444555667777888988899999999999999554322
Q ss_pred eeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
.+..+ -.|+++|.++++.++|.+++|.+.|..++|||++.... +.++. ...+...++++..|
T Consensus 285 -PLvKi----LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----------l~t~~--tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 285 -PLVKI----LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----------LHTYR--TPHPASNLSLSQKG 346 (545)
T ss_pred -hHHHH----HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-----------cceee--cCCCcccccccccc
Confidence 12222 26999999999999999999999999999999875431 11111 12344556778888
Q ss_pred eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 210 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
+++.+-. ..+.+|....... +......+... -..+|..+.|+|-.
T Consensus 347 lLA~~~G-~~v~iw~d~~~~s--~~~~~pYm~H~--~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 347 LLALSYG-DHVQIWKDALKGS--GHGETPYMNHR--CGGPVEDLRFCPYE 391 (545)
T ss_pred ceeeecC-CeeeeehhhhcCC--CCCCcchhhhc--cCcccccceeccHH
Confidence 8776544 4678884322110 00000111111 13478888999854
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-11 Score=103.58 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~ 77 (281)
+...+...+|+|||+.|+..+.+ ..|.+||..+++...+. ...+.+.+.+|+|||+.|+ +.+.++...+|.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 34567889999999998877643 35899998777543333 2345566889999999876 66788887787764
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.... ....+..+........|+|++..++.++. ++...+|.+..... . ...+.. .+ .......|+|+++
T Consensus 271 ~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~---~~~lt~--~g--~~~~~~~~SpDG~ 340 (427)
T PRK02889 271 ADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-A---AQRVTF--TG--SYNTSPRISPDGK 340 (427)
T ss_pred CCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-c---eEEEec--CC--CCcCceEECCCCC
Confidence 3211 12334445555667889999998776664 46667775532211 1 111111 11 1223568999999
Q ss_pred EEEEeeCCC---cEEEEeCCcc
Q 023500 157 KLVSCSDDL---TIKIWGADIT 175 (281)
Q Consensus 157 ~l~s~~~d~---~i~~w~~~~~ 175 (281)
+++..+.++ .|.+||...+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCC
Confidence 988776554 5888887543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-11 Score=100.30 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=124.9
Q ss_pred cceeEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCC--cEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC-GRDK--SVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~--~v~~w~~~ 77 (281)
..+...+|+|||+.||..+. +..+.+|+..+++...+..+.++ +....|+|||++|+.. +.++ .|.+||+.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 46788999999998886542 35788998877765444444443 4468999999987754 4444 58888886
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC-CeEEEEe--CCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWW--AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+.. ..+..+...+....|+|+++.|+.++.+ +...+|. +.... ...+.. +........|+|+
T Consensus 276 tg~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~------~~~lt~----~~~~~~~~~~SpD 341 (429)
T PRK03629 276 SGQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA------PQRITW----EGSQNQDADVSSD 341 (429)
T ss_pred CCCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC------eEEeec----CCCCccCEEECCC
Confidence 5532 2233344567889999999988776654 4555654 33221 112211 1223456889999
Q ss_pred CCEEEEeeCC-C--cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCc---EEEEeccc
Q 023500 155 GDKLVSCSDD-L--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDS---VQFFVESK 227 (281)
Q Consensus 155 ~~~l~s~~~d-~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~---~~~~~~~~ 227 (281)
++.++..+.+ + .|.+||.+.+... .+ ... .......|+|+|. ++..+.++. +.++....
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~---------~L---t~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQ---------VL---TDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE---------Ee---CCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 9988776543 2 4666776543211 11 110 1122456788874 443343432 33332211
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
. .......|...+...+|+|
T Consensus 408 ------~----~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 ------R----FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ------C----CeEECccCCCCcCCcccCC
Confidence 1 1122335677788888987
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=104.48 Aligned_cols=263 Identities=18% Similarity=0.268 Sum_probs=170.7
Q ss_pred CccceeEEEEcCC--CCEEEEeeCCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~--~~~l~tg~~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w~~~ 77 (281)
|...|....|-|. .+-+++++.||.+++=... ++..+..+.+..|.++|.-++.-|+. .-|.|+|.|+.++-.|+.
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 5556666777773 3568899999999987653 34444456677899999999999964 569999999999999998
Q ss_pred CCCeeEEeEeecCCcc---ceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCC------ceeeeeeeeccCCccccEE
Q 023500 78 PGNEFECVSVLQGHAQ---DVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDN------WHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~---~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~------~~~~~~~~~~~~~h~~~v~ 147 (281)
...+......-..+.. ....++.+|... .+++++.|--+++||........ ..|...+. ....-.|+
T Consensus 264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---~d~~v~IT 340 (559)
T KOG1334|consen 264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---EDDPVNIT 340 (559)
T ss_pred cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc---ccCcccce
Confidence 6654333322222333 457888888765 78899999999999876543221 11111111 12245689
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccc-eeEE-eecc-cCcceEEEEeC-C-CceeeecCCCCcEEE
Q 023500 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR-HLCT-ISGY-HDRTIFSVHWS-R-EGIIASGAADDSVQF 222 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~v~~~~~~-~-~~~~~~~~~d~~~~~ 222 (281)
+++|+.++.-|++...|-.|.++.-..+.-.........+ .... +++. ...+|..+.|- | ..++++|+.=|.|-+
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 9999987776667777878888854332221111111000 1111 2221 24567777665 3 567888888899999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
|+.+...++ +++.-. -| -|+|+.-+|--+ +|||+|-|.-||||-.
T Consensus 421 W~K~t~eii------~~MegD-r~--VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 421 WDKKTGEII------RFMEGD-RH--VVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred EecchhHHH------HHhhcc-cc--eEeccCCCCCCc-hhhccCCccceeeecC
Confidence 966543221 222211 12 689999999765 8999999999999976
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-11 Score=101.56 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=100.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEV 76 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~ 76 (281)
...+...+|+|||+.|+..+.+ ..|.+|+..+++...+. .+.+...+.+|+|+|+.|+ +.+.++ .|.+||+
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 3467788999999998887744 36899998776544333 3344455789999999765 555555 5888888
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+. ...+..+......+.|+|++..++.++. ++. |.++++.... ...+.. +.......+|+|
T Consensus 280 ~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~------~~~lt~----~g~~~~~~~~Sp 345 (433)
T PRK04922 280 GSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS------AERLTF----QGNYNARASVSP 345 (433)
T ss_pred CCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC------eEEeec----CCCCccCEEECC
Confidence 6553 2234445445567899999998876664 444 4444443321 111211 112234689999
Q ss_pred CCCEEEEeeCCC---cEEEEeCCcc
Q 023500 154 KGDKLVSCSDDL---TIKIWGADIT 175 (281)
Q Consensus 154 ~~~~l~s~~~d~---~i~~w~~~~~ 175 (281)
+++.++..+.++ .|.+||...+
T Consensus 346 DG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 346 DGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCCEEEEEECCCCceeEEEEECCCC
Confidence 999887765433 5788887543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=95.00 Aligned_cols=163 Identities=19% Similarity=0.426 Sum_probs=121.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec-CCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-PGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~ 80 (281)
.+++++++++..++|..|-..|++.=+.... ++...+.....|...|..+-|+-...++++.+.|..+. |-.. .+.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~ 147 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGN 147 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCC
Confidence 5678889999999999998888877664321 12223455667999999999988888999988887644 5322 110
Q ss_pred --------------------------------------eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 81 --------------------------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 81 --------------------------------------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
....+..+.+|...+++++|.|....+++|+.|..+.+||+.
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 001234567899999999999999999999999999999886
Q ss_pred CCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
.... + .-...+|...|..+..-+.-+.|.+++.||.|.+|+.+..
T Consensus 228 g~~g-----~---~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 228 GRKG-----T---AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CCcc-----e---eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 5421 1 1112378888988888887789999999999999998643
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=98.78 Aligned_cols=144 Identities=18% Similarity=0.300 Sum_probs=91.5
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..+..+.|+|||+. |.+...|-.|.+|...+.....+ .--+..+..++|+|||++.+.++.........+...+.+
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 56788999999964 55667778899999877643222 222346789999999999888765322122222222222
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeE--EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI--KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v--~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
..++.+.-..-..+.+.|+|+++.++. .|+.+ +++ ..+ -.-.+..++|+|.+++|+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV--wd~~Leykv~--------------aYe-----~~lG~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV--WDNVLEYKVY--------------AYE-----RGLGLKFVEWSPCNQFLAV 227 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE--ecchhhheee--------------eee-----eccceeEEEeccccceEEe
Confidence 222233333445788899999887776 33321 111 011 0134778999999999999
Q ss_pred eeCCCcEEEEe
Q 023500 161 CSDDLTIKIWG 171 (281)
Q Consensus 161 ~~~d~~i~~w~ 171 (281)
|+.|+++|+-+
T Consensus 228 GsyD~~lrvln 238 (447)
T KOG4497|consen 228 GSYDQMLRVLN 238 (447)
T ss_pred eccchhhhhhc
Confidence 99999998743
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=108.69 Aligned_cols=151 Identities=17% Similarity=0.302 Sum_probs=114.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCe-----eEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV-----KSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
....+....+.++.+..++.+.|||...+.. +... .+.+.. .-+.++++.-++++|+.-+.|.+|+....+.
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccCce--ehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455667788889999999999866532 2222 233322 1223467778899999999999999863221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+. .+.+|...|..+.|+-++.+++++|+|.++++|.+++.+... ...-+|+++|+.+.|+|. .++++
T Consensus 168 --p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~~~n--~i~t~ 234 (967)
T KOG0974|consen 168 --PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCFLPN--RIITV 234 (967)
T ss_pred --cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEeccc--eeEEe
Confidence 12 478999999999999999999999999999999998764321 112379999999999999 89999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
+.|-++++|+.+
T Consensus 235 gedctcrvW~~~ 246 (967)
T KOG0974|consen 235 GEDCTCRVWGVN 246 (967)
T ss_pred ccceEEEEEecc
Confidence 999999999654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=98.77 Aligned_cols=154 Identities=12% Similarity=0.146 Sum_probs=101.4
Q ss_pred CccceeEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCc--EEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~~w~ 75 (281)
|...+...+|+|||+.|+..+. +..|.+||..++... .+..+.+.+...+|+|||+.|+ +.+.++. |.+||
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 4567889999999998887763 457999998776543 3344566778899999998765 5566665 66667
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+..+. ...+..+........|+|++..++..+. ++ .|++++..... .+.+.. +...+....|+
T Consensus 277 ~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~------~~~lt~----~~~~~~~~~~S 342 (435)
T PRK05137 277 LRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN------PRRISF----GGGRYSTPVWS 342 (435)
T ss_pred CCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC------eEEeec----CCCcccCeEEC
Confidence 65443 2334455555678899999998876664 33 56666654321 122221 12335567899
Q ss_pred cCCCEEEEeeCC-C--cEEEEeC
Q 023500 153 AKGDKLVSCSDD-L--TIKIWGA 172 (281)
Q Consensus 153 ~~~~~l~s~~~d-~--~i~~w~~ 172 (281)
|+++.|+....+ + .|.+|+.
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEEC
Confidence 999988776543 2 3445554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=89.77 Aligned_cols=160 Identities=17% Similarity=0.306 Sum_probs=106.4
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEE--EecCCeEEEEeCCCC
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS--CSYDNTIKVWWAEDT 124 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s--~s~d~~v~~w~~~~~ 124 (281)
..+|.+|.++- ++|+.+-.+ .|.++|+...+....+.....+...+..+..++.+++++- .-.-|.|.+||....
T Consensus 87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45666777654 566666554 4999999866544444444455566777777777778763 334589999987654
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE-EEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI-KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
. .+..+ .+|.+.+.+++|+++|.+|||++..|+| |+|.+..++
T Consensus 164 ~-----~v~~I----~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~--------------------------- 207 (391)
T KOG2110|consen 164 Q-----PVNTI----NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ--------------------------- 207 (391)
T ss_pred e-----eeeEE----EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc---------------------------
Confidence 2 22223 3799999999999999999999999964 555432110
Q ss_pred EeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 204 HWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 204 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++..+. . .--..|.+++|+|+++ +|++.|.-++|.||++..
T Consensus 208 -----------------kl~eFRR---------------G-~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 -----------------KLYEFRR---------------G-TYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----------------EeeeeeC---------------C-ceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 1111110 0 0023478899999876 677888889999998764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-12 Score=100.20 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=117.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec--CCCCCeeEEEEcCCC---C--EEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE--GHENEVKSVSWNASG---T--LLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~---~--~l~s~~~d~~v~~w 74 (281)
|.+.|.++.|+|||++|++-+.| ..++|+..++- +++... +-+.....+.|+.++ . .++.-..-+.|+.|
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~ 261 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC 261 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence 67899999999999999999999 89999988773 233322 344566788888776 2 23344455677877
Q ss_pred EecCCCe--eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 75 EVMPGNE--FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 75 ~~~~~~~--~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
++..-.. .-..+........|.+++.++++++++.|+.||.|.+++..+. +.+.....+|..-|+.+.|+
T Consensus 262 ~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 262 DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEc
Confidence 7642211 0011111122345899999999999999999999999966543 33344456899999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCC
Q 023500 153 AKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~ 173 (281)
|+.+++++.+.|....+..+.
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcCcccccccCCceeEEEEe
Confidence 999999999988888887554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-08 Score=83.57 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=153.7
Q ss_pred eeEEEEcCCCCEEEEeeC----CCcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecC
Q 023500 6 VRSCAWSPSGKLLATASF----DATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMP 78 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~----d~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~ 78 (281)
-..++++|++++|.+..+ ++.|..|.... +....+.........-..++++|++++|+++. .+++|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 356789999998877766 46888887654 45555554442233445689999999988876 589999999976
Q ss_pred CCeeEEe-Eee----------cCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 79 GNEFECV-SVL----------QGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 79 ~~~~~~~-~~~----------~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
....... ... ..-.....++.++|+++++++... ...|.+|+++..... ......+. .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~~~~~---~~~G~GP 194 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPVDSIK---VPPGSGP 194 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEEEEEE---CSTTSSE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEeeccc---cccCCCC
Confidence 4332222 111 112345678999999998776544 358888888654311 11111121 1223457
Q ss_pred EEEEEccCCCEEEE-eeCCCcEEEEeCCccccccCCCCcccceeEEeec----cc-CcceEEEEeCCCc--eeeecCCCC
Q 023500 147 WALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG----YH-DRTIFSVHWSREG--IIASGAADD 218 (281)
Q Consensus 147 ~~~~~~~~~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~v~~~~~~~~~--~~~~~~~d~ 218 (281)
..+.|+|++++++. +-.++.|.+++..... + .++....... .. ......+.++|++ ++++.-..+
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-----g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-----G--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTT-----T--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccC-----C--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 78999999987655 4567889998765110 0 1111211111 11 1245667778876 455555677
Q ss_pred cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++.+|.+.... +.. ..+..........+.++++|+++.++++...++.|.+|++.
T Consensus 268 sI~vf~~d~~~---g~l--~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 268 SISVFDLDPAT---GTL--TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEECTTT---TTE--EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEecCC---Cce--EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 88888773211 111 11222222334578999999999888888889999999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-10 Score=95.95 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=119.4
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+..+.. ..+ ......+....|+|
T Consensus 177 ~L~~~D~dG~~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l---~~~~g~~~~~~~SP 249 (427)
T PRK02889 177 QLQISDADGQN---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVV---ANFKGSNSAPAWSP 249 (427)
T ss_pred EEEEECCCCCC---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEe---ecCCCCccceEECC
Confidence 56666654332 23344577889999999999998876643 3599999976543 222 22223456889999
Q ss_pred CCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccccC
Q 023500 103 TMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSG 180 (281)
Q Consensus 103 ~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~ 180 (281)
+++.++ +.+.++...+|.++.... ....+. .+........|+||++.|+..+ .++...+|..+...-
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~----~~~~lt----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--- 318 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGS----GLRRLT----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--- 318 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC----CcEECC----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---
Confidence 998765 667888877776532211 111221 2333445678999999877555 456778886532110
Q ss_pred CCCcccceeEEeecccCcceEEEEeCCCce-eeecC-CCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGA-ADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
..+.+. . .........|+|+|. ++..+ .++ .+.+|+..... ...+ . .........|+
T Consensus 319 ----~~~~lt-~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~------~~~l-t----~~~~~~~p~~s 379 (427)
T PRK02889 319 ----AAQRVT-F---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ------VTAL-T----DTTRDESPSFA 379 (427)
T ss_pred ----ceEEEe-c---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC------eEEc-c----CCCCccCceEC
Confidence 001111 1 111223456788774 33222 333 46666553321 1111 1 11123567899
Q ss_pred CCCCeeEEEeCCCCeEEEE
Q 023500 257 PGERRLLASASDDGMIKIW 275 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw 275 (281)
|+++.++.+....|.-.++
T Consensus 380 pdg~~l~~~~~~~g~~~l~ 398 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLA 398 (427)
T ss_pred CCCCEEEEEEecCCCEEEE
Confidence 9998766666555543333
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=112.07 Aligned_cols=191 Identities=17% Similarity=0.253 Sum_probs=142.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|.++.=+|...+.+||+.||.+++|...-++........|. ..|+.+.|+..|+.+..+..||.+-+|.+.+ .
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p----k 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP----K 2283 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCC----c
Confidence 5677888899999999999999999998765554333333444 8899999999999999999999999998752 3
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEE---ecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSC---SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~---s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+....+.|........|-. ..++++ +.++.+.+||.....+.. ++. ..|...++++++-|..+.|++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~------~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVH------TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eee------eecCCCceEEEEcCcceEEEe
Confidence 4566778887777777765 445544 356799999876544322 121 468899999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCC
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (281)
|+++|.+.+||++-++. + |.-+. ++...++++++..|.+++|....-.+
T Consensus 2354 ggr~G~v~l~D~rqrql---------~--------h~~~~----~~~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQL---------R--------HTFQA----LDTREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred cCCcCcEEEeehHHHHH---------H--------HHhhh----hhhhheeeccCcccceEEEEccccch
Confidence 99999999999864332 1 11111 23456888999999999998765433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.2e-10 Score=92.41 Aligned_cols=243 Identities=14% Similarity=0.227 Sum_probs=145.6
Q ss_pred cceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeec--------------------------CCC--C-----C
Q 023500 4 RTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLE--------------------------GHE--N-----E 49 (281)
Q Consensus 4 ~~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~--------------------------~h~--~-----~ 49 (281)
..-+.+..+|||+| +|||-+--.|++||......+.-..+. -|. + .
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R 131 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR 131 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee
Confidence 34578899999997 578888999999997653221111110 000 0 0
Q ss_pred ----eeEEEEc-CCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 50 ----VKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 50 ----v~~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
-..++++ |...+++.|+ ...|.=.++..+.- +..+....+.++++..+|-..+|++|+.||.|-.||....
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrf---L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRF---LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred cCcCCccccccCCCccEEEeec-CcceEEEEcccccc---ccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0122222 2223333333 23444455544432 3334445578999999999999999999999999987653
Q ss_pred CCCCceeeeeeeeccCCccc-----cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc
Q 023500 125 DSDNWHCVQTISESNNGHSS-----TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
..-. ..........|+. .|+++.|+.+|-.++.|..+|.+.|||+....+.. ..-....-+
T Consensus 208 srv~---~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-----------~kdh~~e~p 273 (703)
T KOG2321|consen 208 SRVG---TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-----------VKDHGYELP 273 (703)
T ss_pred hhhe---eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-----------ecccCCccc
Confidence 2110 1111111122333 49999999999999999999999999987654321 111123456
Q ss_pred eEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 200 IFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 200 v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
|..+.|.+. +-.+.......+++|+...+ ..+ .... -..+++.+.+-|++ .++.++.++..+..|
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~G-----k~~---asiE--pt~~lND~C~~p~s-Gm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTG-----KPM---ASIE--PTSDLNDFCFVPGS-GMFFTANESSKMHTY 340 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccC-----Cce---eecc--ccCCcCceeeecCC-ceEEEecCCCcceeE
Confidence 777777654 22333345567788955432 211 1112 23458899998965 478888887776554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-09 Score=80.57 Aligned_cols=178 Identities=14% Similarity=0.263 Sum_probs=113.9
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCC--ccceeEEEecC
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH--AQDVKMVQWHP 102 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~v~~v~~~p 102 (281)
+++-|||.... .++.+++ ...+|.+|.++++ +|+..- .+.|.||...... +.+..+... ...+++++=+-
T Consensus 75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecCCC
Confidence 46899996544 3566665 6789999999875 444443 4789999986332 122222221 12233332222
Q ss_pred CCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cEEEEeCCccccccC
Q 023500 103 TMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWGADITRMQSG 180 (281)
Q Consensus 103 ~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~~w~~~~~~~~~~ 180 (281)
...+|+- |-.-|.|+|-++....... .....+|...+.|++++.+|..+||++..| .|||||...+.....
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~-------p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNA-------PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCC-------ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 3334443 3345889998876543211 112348999999999999999999999999 578999875532110
Q ss_pred CCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEeccc
Q 023500 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESK 227 (281)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 227 (281)
.--+.....+.+++|+|+.. ++..+..|++.+|....
T Consensus 220 ----------~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 ----------LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ----------eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 11133567899999999875 55555667999997654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-09 Score=82.66 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=106.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee--cCCCCCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL--EGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~ 80 (281)
.+|.++.+.++ +++..- .+.|.+|...++. ..+..+ ......+.++.-..+...||- |-.-|.|++-|+....
T Consensus 95 ~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 95 SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred cceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 45666666544 444433 5779999765332 122222 223344444432223344443 3356899999986554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE-EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI-KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v-~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.. ....+.+|...|.|++.+-+|..+||+|..|++ |||+..+.. .+.++... ..++.+.+++|||+..+|+
T Consensus 171 ~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~-----~l~E~RRG--~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 171 PN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT-----LLQELRRG--VDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred cC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc-----EeeeeecC--CchheEEEEEeCCCccEEE
Confidence 31 235678999999999999999999999999976 899876653 33334322 2357799999999999999
Q ss_pred EeeCCCcEEEEeCCc
Q 023500 160 SCSDDLTIKIWGADI 174 (281)
Q Consensus 160 s~~~d~~i~~w~~~~ 174 (281)
..+..|++.+|.++.
T Consensus 243 vsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRD 257 (346)
T ss_pred EEcCCCeEEEEEeec
Confidence 999999999997653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-10 Score=93.81 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=121.0
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.+||..+.. ...+..+...+.+.+|+|||+.|+..+.+ ..|.+|++..+.. .. +.........+.|+|
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~---l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL---VASFRGINGAPSFSP 257 (433)
T ss_pred EEEEECCCCCC---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE---eccCCCCccCceECC
Confidence 58888875443 23445577789999999999998877643 4699999865542 22 222333345789999
Q ss_pred CCCeE-EEEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccc
Q 023500 103 TMDVL-FSCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQ 178 (281)
Q Consensus 103 ~~~~l-~s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~ 178 (281)
+++.+ ++.+.++ .|++|++.... ...+. .+.......+|+|+++.|+..+ .+|...+|..+....
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~------~~~lt----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g- 326 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQ------LTRLT----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG- 326 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCC------eEECc----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence 99866 4556666 58888776532 11221 2333445689999999877665 456655554332110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-ee-ecCCCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IA-SGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
..+.+. ..........|+|+|. ++ +...++ .+.+|+..... . . .+. +........
T Consensus 327 ------~~~~lt----~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-----~-~-~Lt----~~~~~~~p~ 385 (433)
T PRK04922 327 ------SAERLT----FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-----V-R-TLT----PGSLDESPS 385 (433)
T ss_pred ------CeEEee----cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC-----e-E-ECC----CCCCCCCce
Confidence 001111 1122233567888774 22 222333 46666543221 1 1 111 112234568
Q ss_pred EcCCCCeeEEEeCCCC--eEEEEEcc
Q 023500 255 WSPGERRLLASASDDG--MIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg--~v~iw~~~ 278 (281)
|+|+++.++.+....+ .|.++++.
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECC
Confidence 9999986655554433 46666653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-08 Score=77.67 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=157.5
Q ss_pred cceeEEEEcCCCCEEEEeeCC---CcEEEEecC--CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD---ATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~ 77 (281)
...+-++|+|++++|-++..+ |.|.-|... .+....+........+-.-++++++|++++++.. -+.|.++.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 457789999999988877655 567766544 3554443332222223367899999999988865 5789999887
Q ss_pred CCCeeEEeEeecCCccc----------eeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 78 PGNEFECVSVLQGHAQD----------VKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~----------v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
.............|... +.++.+.|++++++++.-. ..|.+|++++........ ..+ ......
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~-~~v-----~~G~GP 193 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP-AEV-----KPGAGP 193 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc-ccc-----CCCCCc
Confidence 64432222122223333 7889999999998887654 478899888553322111 111 112445
Q ss_pred EEEEEccCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEEeec-c-cCcceEEEEeCCCceeeecCC--CCcEE
Q 023500 147 WALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISG-Y-HDRTIFSVHWSREGIIASGAA--DDSVQ 221 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~--d~~~~ 221 (281)
..+.|+|++++..... -+++|.+|..+.... .+..+..+..+.. + .....-.|..+++|.++=.+. ..++.
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g----~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG----KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc----eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 6799999999766654 588999997653210 0011111111111 1 123445567778775443332 34677
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|.+.... +. ..+......+....+...|+|.++.|+++.-....|.+|.+..
T Consensus 270 ~f~V~~~~---g~--L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 270 VFSVDPDG---GK--LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEcCCC---CE--EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 77654321 11 2233344455556789999999887776666667799988654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=98.98 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=136.7
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH 130 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~ 130 (281)
+.+.++.+|++|+.||.-|.|-.+|..+..-. ..+. -...|..+.|--+.+++|. ....-++|||-...+ -+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---~Ei~-v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~GtE---lH 204 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---FEIN-VMETVRDVTFLHNEQFFAV-AQKKYVYVYDNNGTE---LH 204 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceee---eeee-hhhhhhhhhhhcchHHHHh-hhhceEEEecCCCcE---Ee
Confidence 46788889999999999999999998765421 1111 2345778888776665554 567788998654332 23
Q ss_pred eeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-Cc
Q 023500 131 CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG 209 (281)
Q Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 209 (281)
|+.+ ...|..+.|-|-.-+|++++..|.++.-|+..++....- . .....+..++..| +.
T Consensus 205 Clk~--------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~----t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 205 CLKR--------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------R----TGAGRTDVMKQNPYNA 264 (545)
T ss_pred ehhh--------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------H----ccCCccchhhcCCccc
Confidence 3322 255888999999889999999999999888766532110 0 0123445555565 55
Q ss_pred eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 210 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+-.|..+|++.+|.++... + +.....|.++|.++++.++|. +++|.|.|..++|||+++.
T Consensus 265 Vih~GhsnGtVSlWSP~ske----P-----LvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKE----P-----LVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred eEEEcCCCceEEecCCCCcc----h-----HHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc
Confidence 77889999999999765421 1 222347999999999999875 6889999999999999864
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=86.37 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=114.7
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
.++.|++.+.-++++..+|.+.+-+......+.++.+++|+-+.+...|+. +.+.+.+||+|+.+..||++..+++ .-
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee
Confidence 467899999888888888988844333334445668899999999999976 5678999999999999999854432 11
Q ss_pred EeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEee
Q 023500 86 SVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCS 162 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~ 162 (281)
..-+-|...|.++.-+|. ..++++|+.|..|++||..... +.+.... -.+.|+-+.++|. +..|++|.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKAK--VGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccCc--cccceEEEEecchhhhHHHHHHH
Confidence 224568888999988875 5689999999999999876432 1122111 2377999999985 34678888
Q ss_pred CCCcEEEEeCC
Q 023500 163 DDLTIKIWGAD 173 (281)
Q Consensus 163 ~d~~i~~w~~~ 173 (281)
..| .++-+..
T Consensus 275 h~G-~ki~~~~ 284 (339)
T KOG0280|consen 275 HNG-AKILDSS 284 (339)
T ss_pred hcC-ceEEEec
Confidence 877 6666543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=92.78 Aligned_cols=223 Identities=17% Similarity=0.341 Sum_probs=133.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
-+.|+|+|+++|+++.- -+.|=|.++-+. .+-+. --..|.-+.|..+..++ .....|+.|.+|++...+ + ..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w--~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-W--YC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-e--EE
Confidence 46799999999998755 455555444321 11111 12345567888877665 456788899999996543 2 23
Q ss_pred eecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 87 VLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.+....+.+.+++|+|++.. +.+...|-.|-+|.+.+.. ...+... ...+..++|+|++++.+.+++-.
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~p----K~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHP----KTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEeccc----ccCceeEEECCCCceeeeeeccc
Confidence 34556778999999999965 5677778899999665431 1112111 23457899999999988877532
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
....+.+-. .+.|.....+ ...+.....+.|+|+|..++ +|+.- . .++.... .
T Consensus 156 Ckdyv~i~~--------c~~W~ll~~f-~~dT~DltgieWsPdg~~la--------Vwd~~----L---eykv~aY---e 208 (447)
T KOG4497|consen 156 CKDYVQISS--------CKAWILLKEF-KLDTIDLTGIEWSPDGNWLA--------VWDNV----L---EYKVYAY---E 208 (447)
T ss_pred HHHHHHHHh--------hHHHHHHHhc-CCCcccccCceECCCCcEEE--------Eecch----h---hheeeee---e
Confidence 211111100 0111111111 11234456788999876553 44211 0 1111111 1
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
-.-.+..++|+|-++ +++.|+.|+.+||-
T Consensus 209 ~~lG~k~v~wsP~~q-flavGsyD~~lrvl 237 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVL 237 (447)
T ss_pred eccceeEEEeccccc-eEEeeccchhhhhh
Confidence 123478899999764 78999999999874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-09 Score=88.38 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=100.6
Q ss_pred cceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~~ 77 (281)
..+...+|+|||++||.+..+ ..|.+|+..++....+ ..+.+.+.+++|+|+|+.|+ +.+.++ .|.+|++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 457788999999999877644 4789999877654333 33556667789999998765 455444 57788876
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC-C--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-N--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+.. ..+..+........|+|+++.++.++.. + .|.+++..... ...+. .+...+....|+|+
T Consensus 267 ~~~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~----~~~~~~~~~~~spd 332 (417)
T TIGR02800 267 GKQL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLT----FRGGYNASPSWSPD 332 (417)
T ss_pred CCCE----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEee----cCCCCccCeEECCC
Confidence 5432 2233444445577899999987766543 3 46666554321 11221 12234567889999
Q ss_pred CCEEEEeeCCC---cEEEEeCCc
Q 023500 155 GDKLVSCSDDL---TIKIWGADI 174 (281)
Q Consensus 155 ~~~l~s~~~d~---~i~~w~~~~ 174 (281)
+++++....++ .|.+||...
T Consensus 333 g~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 333 GDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCEEEEEEccCCceEEEEEeCCC
Confidence 99888877765 666776653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-07 Score=77.11 Aligned_cols=248 Identities=14% Similarity=0.167 Sum_probs=147.3
Q ss_pred EEeeCC----CcEEEEec--CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC----CCcEEEEEecCC-CeeEEeEe
Q 023500 19 ATASFD----ATTCIWED--VGGDYECVATLEGHENEVKSVSWNASGTLLATCGR----DKSVWIWEVMPG-NEFECVSV 87 (281)
Q Consensus 19 ~tg~~d----~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----d~~v~~w~~~~~-~~~~~~~~ 87 (281)
..|+.+ +.|..|+. .+++...+.... -...-..++++|++++|.+... ++.|..|.+... .....+..
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 456655 68888876 455555444433 2344467889999999888765 579999998765 44444444
Q ss_pred ecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeee------ccCCccccEEEEEEccCCCEEEE
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISE------SNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.......-+.++++|++.+++++.. +++|.++++...... ......... ........+.++.|+|+++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l-~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSL-GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEE-EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccc-ceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 4323344567899999999888875 789999988764211 111111100 00112345678999999998777
Q ss_pred eeC-CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccc-
Q 023500 161 CSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY- 236 (281)
Q Consensus 161 ~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~- 236 (281)
... ...|.+|+.+..... +.....+........+.+.|++++ .+++...++.+.++...... +...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~---g~~~~ 230 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD---GSLTE 230 (345)
T ss_dssp EETTTTEEEEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT---TEEEE
T ss_pred EecCCCEEEEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC---CceeE
Confidence 643 347888876532200 111112222234556788888876 45666677888888665211 1100
Q ss_pred eeeee---eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 237 KMLLK---KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 237 ~~~~~---~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..... ...........++++|++++++++....+.|.+|++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 00011 1111122577899999999999988889999999983
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-08 Score=84.87 Aligned_cols=212 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.+||..+.... .+..+.+.+...+|+|||+.|+..+ .+..+.+|++..++. ..+..+.++ +..+.|+|
T Consensus 180 ~l~~~d~dg~~~~---~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~---~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQF---VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRH---NGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCE---EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCC---cCCeEECC
Confidence 5888876554322 3334667889999999999887643 345788999865542 223333333 45689999
Q ss_pred CCCeEEEE-ecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-CCcEEEEeCCccccc
Q 023500 103 TMDVLFSC-SYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGADITRMQ 178 (281)
Q Consensus 103 ~~~~l~s~-s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~~~~~ 178 (281)
++..|+.. +.++ .|++|+++... ...+. .+...+....|+|+++.|+..+. ++..++|..+...-
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~------~~~lt----~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g- 321 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQ------IRQVT----DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG- 321 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCC------EEEcc----CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-
Confidence 99977644 4455 57788775432 11221 12234667899999998776654 45667774332110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCce-e-eecCCCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
..+.+ . ..........|+|+|. + ++...++ .+.+++..... ... +.. .+ ......
T Consensus 322 ------~~~~l---t-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------~~~-Lt~--~~--~~~~p~ 380 (429)
T PRK03629 322 ------APQRI---T-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQV-LTD--TF--LDETPS 380 (429)
T ss_pred ------CeEEe---e-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------eEE-eCC--CC--CCCCce
Confidence 00111 1 1122234567788763 3 3333333 34555443221 111 111 11 223578
Q ss_pred EcCCCCeeEEEeCCCCe---EEEEEc
Q 023500 255 WSPGERRLLASASDDGM---IKIWEL 277 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~---v~iw~~ 277 (281)
|+|+|+.++ .++.|+. +.++++
T Consensus 381 ~SpDG~~i~-~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 381 IAPNGTMVI-YSSSQGMGSVLNLVST 405 (429)
T ss_pred ECCCCCEEE-EEEcCCCceEEEEEEC
Confidence 999987654 4444543 666665
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-08 Score=85.58 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=96.0
Q ss_pred ccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEV 76 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~ 76 (281)
...+...+|+|||+.|+..+.+ ..|.+|+..+++...+.. ..+.+....|+|+|++|+ +.+.++ .|.++|+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 3567788999999988776644 358888887765443333 334455789999999876 455555 5777787
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+.. ..+..+........|+|+++.++..+. ++ .|.++++.... ...+.. .+ .......|+|
T Consensus 275 ~~~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~------~~~lt~--~~--~~~~~~~~Sp 340 (430)
T PRK00178 275 ASRQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR------AERVTF--VG--NYNARPRLSA 340 (430)
T ss_pred CCCCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEeec--CC--CCccceEECC
Confidence 65432 223444445667899999997765554 33 45666554332 111211 11 1223468999
Q ss_pred CCCEEEEeeC-CC--cEEEEeCCc
Q 023500 154 KGDKLVSCSD-DL--TIKIWGADI 174 (281)
Q Consensus 154 ~~~~l~s~~~-d~--~i~~w~~~~ 174 (281)
+++.++.... ++ .|.++|.+.
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCC
Confidence 9998877654 33 355666653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-08 Score=86.00 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=86.1
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..|.+.+.+.+|+|||+.|+..+. +..|.+||+..+.. ..+..+...+....|+|
T Consensus 183 ~l~~~d~dg~~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCC---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECC
Confidence 67788765543 3345567889999999999999887653 46899999965542 22334445667889999
Q ss_pred CCCeE-EEEecCCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCC--cEEEEeCC
Q 023500 103 TMDVL-FSCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDL--TIKIWGAD 173 (281)
Q Consensus 103 ~~~~l-~s~s~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~--~i~~w~~~ 173 (281)
++..+ ++.+.++. |.+|+++... ...+. .+........|+|+++.|+..+ .+| .|.++|..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGT------TTRLT----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCc------eEEcc----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 99876 46666665 5566655432 12221 2334456789999999877665 344 35555543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-08 Score=86.85 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=90.7
Q ss_pred cceeEEEEcCCCCEEEEeeCC-C--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCc--EEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFD-A--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d-~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~~w~~~ 77 (281)
..+....|+|||+.|+..+.+ + .|.+||..+++...+..+. +.....+|+|||+.|+ +.+.++. |.++|+.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 346678999999988866543 3 5778887766544444333 3344689999999776 4566665 6666765
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+. ...+..+........|+|+++.++..+. ++. |.+++++... ...+.. .++ ......|+|+
T Consensus 295 tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~------~~~Lt~--~g~--~~~~~~~SpD 360 (448)
T PRK04792 295 TKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK------VSRLTF--EGE--QNLGGSITPD 360 (448)
T ss_pred CCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEEec--CCC--CCcCeeECCC
Confidence 443 2233444455677899999997765553 444 4444444321 111211 111 1234689999
Q ss_pred CCEEEEeeC-CCcEEEE
Q 023500 155 GDKLVSCSD-DLTIKIW 170 (281)
Q Consensus 155 ~~~l~s~~~-d~~i~~w 170 (281)
++.|+..+. ++..++|
T Consensus 361 G~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCEEEEEEecCCceEEE
Confidence 998766554 4555555
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-07 Score=77.65 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=95.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCCeeEEeE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~~~~~ 86 (281)
.+.|+|||+++..++.|+.|.++|..+.+ .++++.. ...-.++++++||++++++. .++++.++|....+....+.
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 46799999999888999999999998775 3555553 34457899999999988665 68999999986554322221
Q ss_pred ee----cCCccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 87 VL----QGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 87 ~~----~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+. ....+.+..+..+|....++..-.| +.|.+-|...... .....+. .........|+|++++++.+
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~-----~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN---LKVTTIK-----VGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC---EEEEEEE-------TTEEEEEE-TTSSEEEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc---cceeeec-----ccccccccccCcccceeeec
Confidence 11 0133466777778887755554444 7776666554321 1111221 12345678999999987664
Q ss_pred -eCCCcEEEEeCCcc
Q 023500 162 -SDDLTIKIWGADIT 175 (281)
Q Consensus 162 -~~d~~i~~w~~~~~ 175 (281)
-.+..+-++|.+..
T Consensus 190 ~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTG 204 (369)
T ss_dssp EGGGTEEEEEETTTT
T ss_pred ccccceeEEEeeccc
Confidence 45668888887644
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-09 Score=81.96 Aligned_cols=246 Identities=17% Similarity=0.252 Sum_probs=158.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecC-CCcee-eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV-GGDYE-CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~-~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++...-|--+-+.+.+.|.+++||-.. .+++. .++. .-..+++++.+++..++|+.|-..|++.-+.+...
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 34556666666666677899999999999532 22221 1222 23467888999999999999999999998876532
Q ss_pred -CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 -NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 -~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+.....+....|...+..+-|+-....+++.+.|..+. |...+.+.. +..... .....++.+.-. +.
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~----lg~Y~~-----~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNR----LGGYNF-----ETPASALQFDAL--YA 168 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCc----ccceEe-----eccCCCCceeeE--EE
Confidence 22233456778999999999998888999999887764 432221110 000000 011112222111 55
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-CceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
..|...|.+..-...... ...+..+. .|...+.+++|++ ++.+++|..|.++.+|++... +
T Consensus 169 fvGd~~gqvt~lr~~~~~---------~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--------~ 230 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNG---------CQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--------K 230 (404)
T ss_pred EecccccceEEEEEeecC---------CceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------c
Confidence 556666666554332111 12233333 4788999999997 568999999999999977432 1
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
-...+..+|...|..+..-+--+ .+.+++.||.|.+|++...
T Consensus 231 g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 231 GTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccce
Confidence 12334567888888877665444 4679999999999998764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-08 Score=76.56 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=146.6
Q ss_pred CCC-EEEEeeCCCcEEEEecCCCceeeeeeecC---CC---CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE
Q 023500 14 SGK-LLATASFDATTCIWEDVGGDYECVATLEG---HE---NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 14 ~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~---h~---~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
+|. .++-+-.+|.|.+|...... ....+++ -. ....++.|++.+..++++-.+|.+-+-+..... .+...
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~--ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq 159 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDE--SSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQ 159 (339)
T ss_pred CccceeeeccccceEEEEeeccce--eeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecc
Confidence 444 45556677889998643321 1122222 11 123477899999999999999998855443222 23345
Q ss_pred eecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEEeeCC
Q 023500 87 VLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDD 164 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 164 (281)
.++.|.-++..++|+... +++++|+.|+.+..||+..+.. ++ ..-...|...|.++.-+| .+.++++|+-|
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~----~i---~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT----FI---WHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc----ee---eecceeeecceEEEecCCCCCceEEEeccc
Confidence 788899889888887643 5899999999999999874321 11 111235788888888775 56799999999
Q ss_pred CcEEEEeCC-ccccccCCCCcccceeEEeecccCcceEEEEeCCCce---eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 165 LTIKIWGAD-ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI---IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 165 ~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
-.|++||++ ++++.... .-...|..+.++|.-. ++++..+|. ++........ ......
T Consensus 233 e~i~~~DtRnm~kPl~~~-------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~-ki~~~~~~~~----e~~~~~ 294 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKA-------------KVGGGVWRIKHHPEIFHRLLAACMHNGA-KILDSSDKVL----EFQIVL 294 (339)
T ss_pred cceeeeehhcccCccccC-------------ccccceEEEEecchhhhHHHHHHHhcCc-eEEEeccccc----chheee
Confidence 999999987 33332211 1235577777777543 555555553 3333322110 011234
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeC-CCCeEE-EEEc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASAS-DDGMIK-IWEL 277 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~v~-iw~~ 277 (281)
...+.|.+-.....|.... .+++||+ .|..++ +|-.
T Consensus 295 ~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred eccccccceeecccccccc-ceeeeeeccccceeeeeee
Confidence 4556787777777886543 3677765 477755 7753
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-09 Score=83.41 Aligned_cols=225 Identities=18% Similarity=0.293 Sum_probs=135.9
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC--eeEEeEeecCC------------ccceeEEEecCCCC--eEEEE
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--EFECVSVLQGH------------AQDVKMVQWHPTMD--VLFSC 110 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~~~~------------~~~v~~v~~~p~~~--~l~s~ 110 (281)
.+.|.+|.|...|.+|++|..+|.|-++.=.... ++.....++.| ...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578899999999999999999999988532211 22222233333 35688899999876 56777
Q ss_pred ecCCeEEEEeCCCCCCCC----------ceeeeeee-----------------eccCCccccEEEEEEccCCCEEEEeeC
Q 023500 111 SYDNTIKVWWAEDTDSDN----------WHCVQTIS-----------------ESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 111 s~d~~v~~w~~~~~~~~~----------~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
..|.+|++|.+....... ...+..+. ....+|+--++++.++.|.+.++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999876432211 00000000 1124788999999999999888876 4
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccce-ee-
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYK-ML- 239 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~- 239 (281)
|-.|.+|+++....... ....++.. +. -....|++..|+|. .+++=.++.|++++-+.+...+.+..... ..
T Consensus 184 dLRINLWnlei~d~sFn--IVDIKP~n-mE-eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFN--IVDIKPAN-ME-ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ceeeeeccccccCCcee--EEEccccC-HH-HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 77899998765432211 00000000 00 01345566677773 46777788999999987643332211100 00
Q ss_pred -----eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 -----LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 -----~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....+--..|.++.|++.|++ +++-. =-+|+|||+.
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~n 301 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLN 301 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEecc
Confidence 0001111234778999998764 44432 2679999984
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-08 Score=82.92 Aligned_cols=210 Identities=16% Similarity=0.199 Sum_probs=114.2
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+.. ...+..+...+...+|+|+|++|+.++.+ ..|.+|++..+... .+..+...+.++.|+|
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC---CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECC
Confidence 46677664433 23344566778899999999998876543 47999998765431 2223344566789999
Q ss_pred CCCeEE-EEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCc--EEEEeCCccc
Q 023500 103 TMDVLF-SCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLT--IKIWGADITR 176 (281)
Q Consensus 103 ~~~~l~-s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~--i~~w~~~~~~ 176 (281)
+++.++ +.+.++ .|++|++.... ...+. .+........|+|+++.|+..+ .++. |.+++.+..+
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~------~~~l~----~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQ------LTRLT----NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCC------EEECC----CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 998665 555554 57777765432 11121 1223334568999998876654 3444 4444443221
Q ss_pred cccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCC-C--cEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAAD-D--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
. + .+. ..........|++++. ++....+ + .+.+++.... . ...+.. . .....
T Consensus 314 ~---------~---~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------~-~~~l~~---~-~~~~~ 369 (417)
T TIGR02800 314 V---------R---RLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------G-ERVLTD---T-GLDES 369 (417)
T ss_pred E---------E---Eee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------C-eEEccC---C-CCCCC
Confidence 1 1 111 1223345567787763 3333333 3 3444433221 1 111111 1 12334
Q ss_pred EEEcCCCCeeEEEeCCCCe--EEEEE
Q 023500 253 VQWSPGERRLLASASDDGM--IKIWE 276 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~Dg~--v~iw~ 276 (281)
..|+|+++.++.+...++. +.+.+
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 5799998876655554443 44444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-08 Score=81.52 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=129.9
Q ss_pred EEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCC--CcEEEEEecCCCeeEEeEeec--
Q 023500 17 LLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS-GTLLATCGRD--KSVWIWEVMPGNEFECVSVLQ-- 89 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d--~~v~~w~~~~~~~~~~~~~~~-- 89 (281)
.|++|-.+|.+.+|....+. ...+..+..+ ..+..+.-.|. ...+++||.. +.+++||+....+........
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 56678889999999876332 1222233222 45566666664 4566779999 899999997653221111111
Q ss_pred --C--CccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 90 --G--HAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 90 --~--~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+ -.-.++.+.|-|. ...+++++.-+.+++||....+ +.+..+.. -..++.++...|.+..+++|..
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~----~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDF----LENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecc----ccCcceeeeecCCCcEEEEecc
Confidence 0 0123467778776 6789999999999999887432 33443332 1356889999999999999999
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEeccc
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESK 227 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~~~ 227 (281)
-+.+..||...+... .+.+. .....+.++..+|. .++++++-|+.+|+++...
T Consensus 268 ~g~l~~FD~r~~kl~----------g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLL----------GCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cchhheecccCceee----------ccccC-CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999998754321 11122 24677888888888 4788999999999997764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-08 Score=90.70 Aligned_cols=158 Identities=16% Similarity=0.335 Sum_probs=96.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC----C---------Cceeee------------------------------
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV----G---------GDYECV------------------------------ 40 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~----~---------~~~~~~------------------------------ 40 (281)
..|.+++||||+++||....++++.+-... . +..+++
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~ 200 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK 200 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence 579999999999999988888887764311 0 000000
Q ss_pred ---eeecCCCCCeeEEEEcCCCCEEEEecC------CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe
Q 023500 41 ---ATLEGHENEVKSVSWNASGTLLATCGR------DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 41 ---~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
..+. ++..-..|+|..||.++|..+. -+.+|||+=. .... .+-..-..--.+++|.|.|++|++.-
T Consensus 201 ~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~--stSE~v~gLe~~l~WrPsG~lIA~~q 275 (928)
T PF04762_consen 201 VDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQ--STSEPVDGLEGALSWRPSGNLIASSQ 275 (928)
T ss_pred cccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEE--eccccCCCccCCccCCCCCCEEEEEE
Confidence 0011 2334457899999999987764 2578888632 2111 11111122224789999999999877
Q ss_pred c---CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 112 Y---DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 112 ~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
. ...|-+| ++........ .+. .......|..+.|+++++.|+....|. |++|-..
T Consensus 276 ~~~~~~~VvFf--ErNGLrhgeF--~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 276 RLPDRHDVVFF--ERNGLRHGEF--TLR--FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred EcCCCcEEEEE--ecCCcEeeeE--ecC--CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 5 2234444 3333222111 111 112346789999999999999987665 9999653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-08 Score=83.72 Aligned_cols=161 Identities=11% Similarity=0.040 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCE--E-EEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC----cEEEEE
Q 023500 6 VRSCAWSPSGKL--L-ATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK----SVWIWE 75 (281)
Q Consensus 6 i~~~~~~~~~~~--l-~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~----~v~~w~ 75 (281)
+..=+|+|||+. + .+...++ .|.+.+..+++...+..+. +.....+|+|||++|+..+. ++ .+..|+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 344589999974 2 2444444 4666677666544454444 44456899999998775442 23 333466
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
+..+...........+........|+|+++.|+..+ .++...+|.+....... ....+. .+...+....|+|+
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt----~~~~~~~~p~wSPD 337 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLT----KKYRNSSCPAWSPD 337 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEec----cCCCCccceeECCC
Confidence 543211112222222223346789999999776655 46666666432111000 111121 12234567899999
Q ss_pred CCEEEEeeCC---CcEEEEeCCcc
Q 023500 155 GDKLVSCSDD---LTIKIWGADIT 175 (281)
Q Consensus 155 ~~~l~s~~~d---~~i~~w~~~~~ 175 (281)
++.|+..+.+ ..|.+||...+
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCC
Confidence 9988766543 35777877543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=91.81 Aligned_cols=243 Identities=15% Similarity=0.238 Sum_probs=151.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-------------eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-------------YECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
....|++|+....++|+|+.||.+++-...+.. ...-++++||.+.|.-+.|+...+.|-|+..+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456799999999999999999999998643211 1112467899999999999999899999999999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEE
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
|.||-+-.+.-.+. .+-....+.|.+.+|+.+|..+..+-+||.|-+=.++.. +.|- ..+ ++ .....+.
T Consensus 95 IiVWmlykgsW~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN--RIwg--KeL----kg--~~l~hv~ 163 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN--RIWG--KEL----KG--QLLAHVL 163 (1189)
T ss_pred EEEEeeecccHHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc--eecc--hhc----ch--hecccee
Confidence 99999865531111 111234567899999999999999999998876433321 1110 011 11 1234678
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC---------CceeeecCCCCcEE
Q 023500 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR---------EGIIASGAADDSVQ 221 (281)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~d~~~~ 221 (281)
|++|.+.++.+-..|.+.+||... ....+-..................+-.+.|.. ...++.+-.+|.++
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQG-NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccc-cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999998888888999999998642 11111111110000000011122344444432 23567777778777
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
+.....+. .| .++. . ...+..+.|+++|. +++.||.|
T Consensus 243 iMR~eND~---~P---vv~d--t--gm~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDP---EP---VVVD--T--GMKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred hhhhcCCC---CC---eEEe--c--ccEeecceecCCCc-EEEEccCc
Confidence 76322110 11 1111 1 14577889999875 56777655
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-09 Score=85.50 Aligned_cols=213 Identities=16% Similarity=0.268 Sum_probs=127.6
Q ss_pred CCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCe-eE--------EeEe----------------ecCCc------
Q 023500 45 GHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNE-FE--------CVSV----------------LQGHA------ 92 (281)
Q Consensus 45 ~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~-~~--------~~~~----------------~~~~~------ 92 (281)
+|...-+.|..+|||+++ ++|-.--.|++||+.+-.. ++ .... +.-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 477778899999999985 5555677999999853210 00 0000 00010
Q ss_pred -----cceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcE
Q 023500 93 -----QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167 (281)
Q Consensus 93 -----~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 167 (281)
...+.++++.-.+=|+.++....|+=++++.+. .+. +.....+.++++..++...+|++|+.+|.+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-----fL~----P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-----FLN----PFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccc-----ccc----ccccccccceeeeecCccceEEecccCceE
Confidence 011233344334444555555556555665542 111 122234678999999998899999999999
Q ss_pred EEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 168 KIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 168 ~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
.+||...+..-....... .+...++ -....|++++|..+|+ ++.|.++|.+.+|++... ..++...+.
T Consensus 200 EfwDpR~ksrv~~l~~~~--~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--------~pl~~kdh~ 269 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAAS--SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--------KPLLVKDHG 269 (703)
T ss_pred EEecchhhhhheeeeccc--ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--------CceeecccC
Confidence 999986543221111110 0000111 1234588999999775 788889999999977542 123334456
Q ss_pred CCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEc
Q 023500 246 HDMDVNSVQWSPGER-RLLASASDDGMIKIWEL 277 (281)
Q Consensus 246 h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~ 277 (281)
...+|..+.|.+.+. ..++|. +...++|||-
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~ 301 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE 301 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhccc
Confidence 678899999987532 334443 3567999984
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-06 Score=67.42 Aligned_cols=242 Identities=17% Similarity=0.224 Sum_probs=129.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC---CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE-
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE---NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE- 83 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~- 83 (281)
-++.+.+|++||. -.|..|.|=...++=..++....-.. -.=..++||||+..||.+...|+|+++|+....-+.
T Consensus 2 ~~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 3567889999976 45777777543321111222222122 234689999999999999999999999986432110
Q ss_pred -EeEeec-CCccceeEEEecCC------CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 84 -CVSVLQ-GHAQDVKMVQWHPT------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 84 -~~~~~~-~~~~~v~~v~~~p~------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+..... .-...|..+.|-+- ...|+.-..+|.++=+-+....+...+....+... ..++..|.++.|+|..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~-~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS-SHYPHGINSAVYHPKH 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-ccCCCceeEEEEcCCC
Confidence 000011 11234555555332 12466667888887776643333333333333321 2346789999999998
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc------EEEEecccCC
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS------VQFFVESKDD 229 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~------~~~~~~~~~~ 229 (281)
++|+.|+....= +.......-++..||.+.. . |-...+....|+. ..++..
T Consensus 160 ~LLlVgG~~~~~-----~~~s~a~~~GLtaWRiL~~------~--------Pyyk~v~~~~~~~~~~~~~~~~~~~---- 216 (282)
T PF15492_consen 160 RLLLVGGCEQNQ-----DGMSKASSCGLTAWRILSD------S--------PYYKQVTSSEDDITASSKRRGLLRI---- 216 (282)
T ss_pred CEEEEeccCCCC-----CccccccccCceEEEEcCC------C--------CcEEEccccCccccccccccceeec----
Confidence 887777643320 0000011123333332211 1 1111111111111 011100
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
... .+......-...|..+..+|++. +|++...+|.|.+|++.+.
T Consensus 217 ----~~~-~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 217 ----PSF-KFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ----cce-eeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc
Confidence 000 11111222345688999999986 6889999999999998763
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-08 Score=81.90 Aligned_cols=193 Identities=12% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEe------cC--------------CCCeEEEEecCCeE
Q 023500 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW------HP--------------TMDVLFSCSYDNTI 116 (281)
Q Consensus 57 ~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~------~p--------------~~~~l~s~s~d~~v 116 (281)
|...++|....||.+++|+...++..+.......-.+.+++..| +| +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678899999999999998765432211111111223344444 22 22357778888999
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
.++.+..... ...+ ....|.+.|.++.++.+-..|.+++.|..+-.|+.+..+ ..+.. ...
T Consensus 83 ~~ys~~~g~i-----t~~~--st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----------~~~~~-~~~ 143 (541)
T KOG4547|consen 83 LLYSVAGGEI-----TAKL--STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----------IIRIW-KEQ 143 (541)
T ss_pred EEEEecCCeE-----EEEE--ecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----------eeeee-ccC
Confidence 9987665431 1112 224689999999999988899999999999999876432 22222 234
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCC-----CCeeEEEeCCCC
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG-----ERRLLASASDDG 270 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~~s~~~Dg 270 (281)
...+.+++.+|++ ++++++ +.+.+|+... +..+....+|.++|++++|-.. |.+++.+...+.
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 5667788888886 444444 4688997754 2345567799999999999876 667777777777
Q ss_pred eEEEEEccc
Q 023500 271 MIKIWELAN 279 (281)
Q Consensus 271 ~v~iw~~~~ 279 (281)
.+.+|.+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 888998764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=60.90 Aligned_cols=38 Identities=32% Similarity=0.897 Sum_probs=36.0
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-07 Score=76.95 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=78.0
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEecCCCeeEEeEeecCCccceeEEEecCC
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT 103 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 103 (281)
|.++|..+.. ...+..+...+...+|+|||++|+..+.+ ..|.+|++..+.. +.+ ......+....|+|+
T Consensus 181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l---~~~~g~~~~~~~SpD 253 (430)
T PRK00178 181 LQRSDYDGAR---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQI---TNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEECCCCCC---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEc---cCCCCCcCCeEECCC
Confidence 6666665543 23344567788999999999998766543 3688888865542 222 222233456899999
Q ss_pred CCeEE-EEecCC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEE
Q 023500 104 MDVLF-SCSYDN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIW 170 (281)
Q Consensus 104 ~~~l~-s~s~d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w 170 (281)
++.++ +.+.++ .|+++++.... ...+. .+........|+|+++.++..+ .++...+|
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~------~~~lt----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQ------LSRVT----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC------eEEcc----cCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 98765 555555 57777765432 11121 2233445678999998766554 44554444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=81.07 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcCCC---CEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...+.++|+++++|.+..+..+.+++..... .+++...-. ...-+++.|-.+. .....+|+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 3456688899999999888887676654433 222222211 1222334443332 2333455666666665532
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.+...+.||-+-+..|+|+|+++.|+++-.|..|++-+...... +...+-||+.=|..++.-++ +.|++
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------IesfclGH~eFVS~isl~~~-~~LlS 210 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------IESFCLGHKEFVSTISLTDN-YLLLS 210 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------hhhhccccHhheeeeeeccC-ceeee
Confidence 23455679999999999999999999999999999876544321 12223589999998888655 46899
Q ss_pred eeCCCcEEEEeCCcccc
Q 023500 161 CSDDLTIKIWGADITRM 177 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~ 177 (281)
++.|+++++||...++.
T Consensus 211 ~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKL 227 (390)
T ss_pred cCCCCcEEEEecccCCc
Confidence 99999999999876654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-07 Score=84.33 Aligned_cols=244 Identities=18% Similarity=0.256 Sum_probs=150.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEE----ecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIW----EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+.|..+.|-++..-++.+..+|.|.+. +......+.+..+ +..|.+++||||+..|+....++++.+-+-.-.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 568888999999888888999999998 6666666666655 478999999999999888777787776542100
Q ss_pred ------------CeeEEeE---------------------------------eecCCccceeEEEecCCCCeEEEEec--
Q 023500 80 ------------NEFECVS---------------------------------VLQGHAQDVKMVQWHPTMDVLFSCSY-- 112 (281)
Q Consensus 80 ------------~~~~~~~---------------------------------~~~~~~~~v~~v~~~p~~~~l~s~s~-- 112 (281)
++.+.+. .+. +.+.-..++|-.||.+++..+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0000000 001 2334567889999999987764
Q ss_pred -C---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC---CCcEEEEeCCccccccCCCCcc
Q 023500 113 -D---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIWGADITRMQSGDGYAS 185 (281)
Q Consensus 113 -d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~w~~~~~~~~~~~~~~~ 185 (281)
+ ..+|||+-+.. +....+.. .+.-.+++|.|.|.++++.-. ...|.+|.-+..+
T Consensus 232 ~~~~~R~iRVy~ReG~-------L~stSE~v---~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr--------- 292 (928)
T PF04762_consen 232 ETGSRRVIRVYSREGE-------LQSTSEPV---DGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR--------- 292 (928)
T ss_pred CCCceeEEEEECCCce-------EEeccccC---CCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE---------
Confidence 2 47889943311 11111111 222346899999998888764 3456666432111
Q ss_pred cceeEEee-cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 186 WRHLCTIS-GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 186 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
...+.+. ......+..+.|+.++.+++......+++|..+.. ....|+.+.. .....+..+.|+|..+..+.
T Consensus 293 -hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY----HWYLKqei~~--~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 293 -HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY----HWYLKQEIRF--SSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC----EEEEEEEEEc--cCCCCCCceEECCCCCCEEE
Confidence 0111111 12356789999999987666665656999955321 1222222221 12233555999997665555
Q ss_pred EeCCCCeEEEEEc
Q 023500 265 SASDDGMIKIWEL 277 (281)
Q Consensus 265 s~~~Dg~v~iw~~ 277 (281)
....+|.+..+++
T Consensus 366 v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 366 VLTSNGQYEIYDF 378 (928)
T ss_pred EEecCCcEEEEEE
Confidence 6666677666554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-10 Score=102.50 Aligned_cols=144 Identities=17% Similarity=0.339 Sum_probs=112.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~~ 80 (281)
..|+.+.|+.+|.-+..+..||.+.+|.... .+....+.|+.....+.|-. ..+++++ +++++.+||.....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC---cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc
Confidence 3567788999999999999999999998763 34567788999999888865 5666654 67899999965443
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
....+. ++|...++++++-|..+++++|+.+|.|++||+.... + .|.-+. ++ ...++++
T Consensus 2327 ~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq---------l-----~h~~~~----~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ---------L-----RHTFQA----LD-TREYFVT 2385 (2439)
T ss_pred ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH---------H-----HHHhhh----hh-hhheeec
Confidence 333333 7899999999999999999999999999999886532 1 122222 33 5579999
Q ss_pred eeCCCcEEEEeCC
Q 023500 161 CSDDLTIKIWGAD 173 (281)
Q Consensus 161 ~~~d~~i~~w~~~ 173 (281)
|+..|.++||++.
T Consensus 2386 ~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLS 2398 (2439)
T ss_pred cCcccceEEEEcc
Confidence 9999999999875
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-07 Score=78.42 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=112.7
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC--cEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.++|..+... ..+..+...+.+..|+|||++|+..+. ++ .|.+||+..++. ..+.... .......|+|
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECC
Confidence 466666655432 233345678889999999998876543 33 577788765442 2222222 2235789999
Q ss_pred CCCeEE-EEecCCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEE--eCCccc
Q 023500 103 TMDVLF-SCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIW--GADITR 176 (281)
Q Consensus 103 ~~~~l~-s~s~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w--~~~~~~ 176 (281)
+++.|+ +.+.++. |++++++... ...+. .+........|+|+++.++..+ .++...+| +.+.++
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~------~~~lt----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKA------LTRIT----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCC------eEECc----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 999765 5566775 5566654432 11221 2233455678999998776544 45555555 433221
Q ss_pred cccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
. +.+. . .........|+|+|. +++...++..++|..... .+. . ..+... .. .....
T Consensus 342 ~---------~~Lt-~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~---~g~-~-~~lt~~-~~---d~~ps 399 (448)
T PRK04792 342 V---------SRLT-F---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE---TGA-M-QVLTST-RL---DESPS 399 (448)
T ss_pred E---------EEEe-c---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC---CCC-e-EEccCC-CC---CCCce
Confidence 1 1111 1 111123346777763 333334454555543211 111 1 111111 11 12347
Q ss_pred EcCCCCeeEEEeCCCCe--EEEEEc
Q 023500 255 WSPGERRLLASASDDGM--IKIWEL 277 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~--v~iw~~ 277 (281)
|+|+++.++.+...++. +.+++.
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEEC
Confidence 99999877766666665 555554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=78.51 Aligned_cols=221 Identities=16% Similarity=0.259 Sum_probs=135.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---eeeeeeecCCC------------CCeeEEEEcCC-CC-EEEEe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---YECVATLEGHE------------NEVKSVSWNAS-GT-LLATC 65 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~------------~~v~~v~~~~~-~~-~l~s~ 65 (281)
.+.|+++.|...|.||+||...|-+.+|...... .+....+++|. +.|..+.|-.+ ++ .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3679999999999999999999999999765432 22334455555 34677877544 32 46666
Q ss_pred cCCCcEEEEEecCCCee----------------------------------E-----EeEee-cCCccceeEEEecCCCC
Q 023500 66 GRDKSVWIWEVMPGNEF----------------------------------E-----CVSVL-QGHAQDVKMVQWHPTMD 105 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~----------------------------------~-----~~~~~-~~~~~~v~~v~~~p~~~ 105 (281)
..|++|++|.+...... + +.++. .+|..-++++.++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78899999987532100 0 01112 46778889999999988
Q ss_pred eEEEEecCCeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCC
Q 023500 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGY 183 (281)
Q Consensus 106 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 183 (281)
.+++ +.|=.|.+|.++-.+. .+ .+..+.. ....-...+++..|+|.. ..+.-.+..|.|++-|++... ..+..
T Consensus 186 t~lS-aDdLrINLWnl~i~D~-sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a--lcdn~ 260 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDG-SF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA--LCDNS 260 (460)
T ss_pred eeee-ccceeeeeccccccCC-ce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh--hccCc
Confidence 8887 4577999997765431 11 1111100 000113557888999864 456666778999999875211 00100
Q ss_pred cccceeE----Eee--cccCcceEEEEeCCCceeeecCCCCcEEEEecccC
Q 023500 184 ASWRHLC----TIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD 228 (281)
Q Consensus 184 ~~~~~~~----~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 228 (281)
.++-... ... ..-...|..+.|+++|.++..-.-.++.+|+++..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 0000000 000 01134566788999996666556678999987653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=89.49 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=149.7
Q ss_pred eeEEEEcCCC--CE-EEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCC
Q 023500 6 VRSCAWSPSG--KL-LATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~~--~~-l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|-...|+|.. .+ +++-+ ...-.+|+..... ...-..+.||...|+.+.|+|. ...+++++.|-.+..||++...
T Consensus 70 vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 3345666643 33 44433 4445578753321 1122345689999999999994 6689999999999999998665
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~ 159 (281)
. +...+..-......|+|+.....+.+.+..+.|++||...... + + -..++|...|+.++|..- ...+.
T Consensus 149 ~--p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-p------l-~s~K~~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 149 R--PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-P------L-CSLKGHVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred c--ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-c------e-EEecccceeeehHHHhhhhhhhhc
Confidence 3 2344444345578899998777777778889999998865421 1 1 112458888999998753 34688
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCC-CCcEEEEecccCCCcCC-cc
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAA-DDSVQFFVESKDDLIDG-PS 235 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~-d~~~~~~~~~~~~~~~~-~~ 235 (281)
+++.|+++++||.....-. +.. +. ..+.++..-.+.| +|+.++-.. +..+..+.....+.... ..
T Consensus 219 s~~~d~tvkfw~y~kSt~e-------~~~--~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~ 287 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTE-------SKR--TV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD 287 (1081)
T ss_pred ccCCCCceeeecccccccc-------cce--ec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc
Confidence 9999999999986421100 000 00 1233444444444 333332222 22333333322221110 00
Q ss_pred ceeeeeeccCCCCCeeEEEEcC--------CC-CeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSP--------GE-RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~--------~~-~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...-+....+|...|....|-. +. .+.|+|-+.|..||+|-+.+
T Consensus 288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1122344568887776555533 22 23578999999999998754
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-08 Score=80.79 Aligned_cols=163 Identities=19% Similarity=0.214 Sum_probs=111.5
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~~ 78 (281)
||.+.|+-+ +..-.+++.+++.||.++.|.... .-.+.++.+..|-+.|.+++.+.+|..+.|.+. |..++++|+.+
T Consensus 7 mhrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 788888877 445678999999999999997654 334567778889999999999999999999888 99999999976
Q ss_pred CCeeEEeEeecCCccceeEEEecCCC---CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~---~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
..-..-+. +.--...+.+ -.+|.. .+-++.-.++.+.++|-.... |.. .....-|..+|.++.++|.+
T Consensus 86 ~DminmiK-L~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~-----~q~--~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 86 FDMINMIK-LVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDF-----CQD--GYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred cchhhhcc-cccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCc-----Ccc--ceecccccCceEEEEeeccc
Confidence 54211111 1100111111 112221 123344456788888543221 111 11123588999999999999
Q ss_pred CEEEEeeCCCcEEEEeCC
Q 023500 156 DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~ 173 (281)
+.+++....|+|..|..+
T Consensus 157 Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cceeeccccceeEeecCC
Confidence 999999999999999664
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.1e-08 Score=80.25 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=114.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
..++|-|-.-|.|.+|+...++..-...-..|.+.|.++.++.+-..|.|+++|+.+-.|+..... .++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---IIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---eeeeeccCCCc
Confidence 347888889999999998887654333335799999999999988899999999999999986543 45667778888
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-----CCEEEEe-eCCCcEE
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-----GDKLVSC-SDDLTIK 168 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~-~~d~~i~ 168 (281)
+.+++.+|++..++++| +.|++|++++.+ .+.++ .||.++|.++.|--. |.++++. ..+..+.
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~ke-----vv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKE-----VVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCce-----EEEEe----cCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 99999999999999865 799999888653 33333 589999999999765 5666554 4456678
Q ss_pred EEeCC
Q 023500 169 IWGAD 173 (281)
Q Consensus 169 ~w~~~ 173 (281)
+|-++
T Consensus 216 ~w~v~ 220 (541)
T KOG4547|consen 216 VWVVE 220 (541)
T ss_pred EEEEE
Confidence 88543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.8e-06 Score=66.34 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=118.4
Q ss_pred EcCCCCEEEEeeC----------CCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEec-C-CCcE
Q 023500 11 WSPSGKLLATASF----------DATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCG-R-DKSV 71 (281)
Q Consensus 11 ~~~~~~~l~tg~~----------d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~-~-d~~v 71 (281)
++|||+.|..+.. +..|.+||..+.+. +..+.-- ...-..++++|||++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8999997765554 67899999887753 3333311 11223688999999988766 3 6899
Q ss_pred EEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc--CCccccEEEE
Q 023500 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN--NGHSSTIWAL 149 (281)
Q Consensus 72 ~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~ 149 (281)
-+.|+...+....+.+ + .+..-...+++. ...-+.|++......+....... ....+.... .....+
T Consensus 131 ~VvD~~~~kvv~ei~v--p--~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~-~~~~vf~~~~~~v~~rP---- 199 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDV--P--DCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKI-KPTEVFHPEDEYLINHP---- 199 (352)
T ss_pred EEEECCCCcEEEEEeC--C--CCcEEEEecCCc--cEEEeecCceEEEEecCCCceEE-eeeeeecCCccccccCC----
Confidence 9999976653222221 0 001111111111 11223455443333322211000 000010000 000111
Q ss_pred EEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eee-ecCCC--------
Q 023500 150 SFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIA-SGAAD-------- 217 (281)
Q Consensus 150 ~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~-~~~~d-------- 217 (281)
.|.+ +++++..... |+|.+.|+...................-.+.......-+.+++++ +++ +-...
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 3445 7776666555 999999853221111100000000000001111112225666553 222 21111
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEcccC
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWELANT 280 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.+.+++.... +....... ...+..++++|+++ .++++...++.|.+.|..+.
T Consensus 279 ~~V~ViD~~t~--------kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 279 RFLFVVDAKTG--------KRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CEEEEEECCCC--------eEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 34555544321 22222222 34688999999998 66767777899999998653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-07 Score=78.16 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=87.9
Q ss_pred eEEEEcCCCCEEEEeeC-CC--c--EEEEecCCCce-eeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCC
Q 023500 7 RSCAWSPSGKLLATASF-DA--T--TCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPG 79 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~-d~--~--i~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~ 79 (281)
...+|+|||+.||..+. +| . +.+|+...+.. .......++.+.....+|+|||+.|+..+ .++...+|.+...
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 45689999988775542 33 2 33355443211 11111222223445789999999877655 4666666654321
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
........+..+...+....|+|+++.|+..+.+ ..|.+|+++.... ..+.. ....+....|+|+++
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------~~Lt~----~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------YQLTT----SPENKESPSWAIDSL 383 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------EEccC----CCCCccceEECCCCC
Confidence 1101123333444456788999999988766543 3688888765421 11211 122355688999998
Q ss_pred EEEEe-eCC--CcEEEEeCC
Q 023500 157 KLVSC-SDD--LTIKIWGAD 173 (281)
Q Consensus 157 ~l~s~-~~d--~~i~~w~~~ 173 (281)
.|+.. ... ..|.+++++
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EEEEEECCCCCceEEEEECC
Confidence 77643 333 345555554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-06 Score=70.39 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=85.4
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeE
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~ 97 (281)
+++-..++.+.+.|..+.+ .+..+......-..+.|+|||++++.++.|+.|.++|+...+. +..+.. ......
T Consensus 9 ~V~~~~~~~v~viD~~t~~--~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~---v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNK--VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV---VATIKV-GGNPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-S--EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---EEEEE--SSEEEE
T ss_pred EEEecCCCEEEEEECCCCe--EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE---EEEEec-CCCcce
Confidence 3566678999999977654 3566654333334578999999999999999999999987663 333332 234678
Q ss_pred EEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeee---ccCCccccEEEEEEccCCCEEEEeeC-CCcEEEEe
Q 023500 98 VQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISE---SNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWG 171 (281)
Q Consensus 98 v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~ 171 (281)
++++|++++++++. ..+.+.++|.++.+ .+..+.. .......++.++-.+|....++..-. .+.|-+-|
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle-----~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLE-----PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT-------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEecCCCceeEecccccc-----ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 99999999887655 67899999876542 2222221 11113345667766777665554444 35554444
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=55.19 Aligned_cols=38 Identities=37% Similarity=0.776 Sum_probs=35.5
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
+++.++.+|...|++++|+|+++++++++.|++|++|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778899999999999999999999999999999995
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=64.04 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=141.5
Q ss_pred CCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCC-CeeEEeEeecCCccceeE
Q 023500 24 DATTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPG-NEFECVSVLQGHAQDVKM 97 (281)
Q Consensus 24 d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~-~~~~~~~~~~~~~~~v~~ 97 (281)
+..|..|+..+. +...+. +-.+.+..+-++|+|+++.|.++-. ++.|-.+.+... .....+.........-+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567999987633 222222 2346678889999999998887754 577888888643 222222221212223378
Q ss_pred EEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeecc-CCc----cccEEEEEEccCCCEEEEeeC-CCcEEEE
Q 023500 98 VQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESN-NGH----SSTIWALSFNAKGDKLVSCSD-DLTIKIW 170 (281)
Q Consensus 98 v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~-~~h----~~~v~~~~~~~~~~~l~s~~~-d~~i~~w 170 (281)
+++++++++++++... +.|.++.+..... .+..+..+.... ..| ...+....|.|++++|++++. .-.|.+|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCc-cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 9999999999888876 6888987754211 111111111111 112 112778899999999988863 2258889
Q ss_pred eCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCC-CcCCccceeeeeeccCCC
Q 023500 171 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDD-LIDGPSYKMLLKKEKAHD 247 (281)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~ 247 (281)
+.+.+....... . .+ -...-.+.|.|+|++. ++..--++++.+|...... ..........+...-...
T Consensus 173 ~~~dg~L~~~~~------~-~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 173 DLDDGKLTPADP------A-EV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred EcccCccccccc------c-cc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 876433221110 0 01 1234457788899874 4456678888888665421 000000011111122234
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....+|..+|+|+++++|--....|-+|.+.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 4567788999998887776555667676653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-05 Score=72.55 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=143.4
Q ss_pred EEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeeeeecCCC------------CCeeEEEEcCCCCEEEE-ecCCCcEEE
Q 023500 8 SCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHE------------NEVKSVSWNASGTLLAT-CGRDKSVWI 73 (281)
Q Consensus 8 ~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~------------~~v~~v~~~~~~~~l~s-~~~d~~v~~ 73 (281)
.++++++ ++++++-...+.|.++|..+........ .+.. ..-..++++++++.|+. -...+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788874 6677777778889999875432111111 0111 12367889998876544 445678888
Q ss_pred EEecCCCeeEEeEeecC----------C-------ccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeee-
Q 023500 74 WEVMPGNEFECVSVLQG----------H-------AQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT- 134 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~----------~-------~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~- 134 (281)
+|+..+. +.++.+ . -..-..++++| ++.++++.+.++.|++|+....... ....
T Consensus 651 id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~---~~~G~ 723 (1057)
T PLN02919 651 IDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR---VFSGD 723 (1057)
T ss_pred EecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE---EEecC
Confidence 8875432 111111 0 01124789999 5667788888899999987543110 0000
Q ss_pred -eeeccC------CccccEEEEEEccCCCE-EEEeeCCCcEEEEeCCccccccCCCCcc-c-ceeEEee---c----ccC
Q 023500 135 -ISESNN------GHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYAS-W-RHLCTIS---G----YHD 197 (281)
Q Consensus 135 -~~~~~~------~h~~~v~~~~~~~~~~~-l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~-~~~~~~~---~----~~~ 197 (281)
...... ..-..+..++++|+++. +++-..++.|++||.+........+... . .....+. + ..-
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 000000 11234678999999884 4555567899999976432110000000 0 0000000 0 001
Q ss_pred cceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee-ee---eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeE
Q 023500 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM-LL---KKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272 (281)
Q Consensus 198 ~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v 272 (281)
.....+.++++| ++++-..++.+++|+.............. -. ....+.-.....++++++|. ++++.+.++.|
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~I 882 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLI 882 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEE
Confidence 123466777766 56777788899999765321110000000 00 00011223567899999875 78888889999
Q ss_pred EEEEccc
Q 023500 273 KIWELAN 279 (281)
Q Consensus 273 ~iw~~~~ 279 (281)
++||+..
T Consensus 883 rvid~~~ 889 (1057)
T PLN02919 883 RYLDLNK 889 (1057)
T ss_pred EEEECCC
Confidence 9999864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-06 Score=66.13 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=102.4
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCC--CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccce
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHEN--EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v 95 (281)
+..++.|+++++.+...+..... -|.. .++.+.++|+++++++.|+...|..+.+....++-....+..-.+.-
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~----~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA----VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred eeeccCCcceeEEEEecCcccce----eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 45678888888887655432211 1332 37889999999999999999999999997665432221222334445
Q ss_pred eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC--CEEEEeeCCCcEEEEeCC
Q 023500 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG--DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 96 ~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~~w~~~ 173 (281)
.+..|+.....+|++..||++.|||+..... ...........|.+.+..+.|++-| ++|...-.=+.+.+.|++
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMAT----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEeccccc----chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 7889999999999999999999999976532 1122222233588899999999754 344444445567787775
Q ss_pred c
Q 023500 174 I 174 (281)
Q Consensus 174 ~ 174 (281)
.
T Consensus 283 ~ 283 (344)
T KOG4532|consen 283 N 283 (344)
T ss_pred c
Confidence 4
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-06 Score=69.03 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=86.6
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----------CcEEEEE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----------KSVWIWE 75 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----------~~v~~w~ 75 (281)
+.+.|||-|.||+|=-.- .|.||-- .++..++.+. |. .|.-+.|||..++|+|-|.. ..+.+||
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG--~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGG--ESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecC--ccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 568899999999886544 4889942 2233344443 54 47889999999999986632 5889999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+.++.....-.++.+....---..|+.++.++|--.. .+|.|++..+-.. .....-....|....|+|.+
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---------ld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---------LDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---------ecccccCCccccCcccCCCc
Confidence 9988643322222333333345689999888875444 7788885543211 11111112345566677766
Q ss_pred CEEEEe
Q 023500 156 DKLVSC 161 (281)
Q Consensus 156 ~~l~s~ 161 (281)
..||--
T Consensus 359 ~llAYw 364 (698)
T KOG2314|consen 359 NLLAYW 364 (698)
T ss_pred ceEEEE
Confidence 555543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=77.55 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=92.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC---ceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG---DYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~---~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
..|.++.|...++++..|+-.|.|...|.... ...+.+.+. |+..|+++..-. ++.+|++++.+|+|++||++..
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 45777888888999999999999999997432 334455554 999999998866 7889999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEE--ecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 80 NEFECVSVLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~--~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
+-...+..+.+|...-.-+. .+|....+++++.|...++|.+.+.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 44344778888854333332 3456678999999999999976654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-06 Score=64.27 Aligned_cols=175 Identities=13% Similarity=0.030 Sum_probs=113.9
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc-
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ- 93 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~- 93 (281)
.+||.|+.-|...+|...+++. ..+....|...|.-+.=..+ ...+..++.|.++++.++..+..... -|..
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~-----~h~~~ 158 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA-----VHNQN 158 (344)
T ss_pred cEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-----eeccc
Confidence 4889999999999998876542 34444445544433322222 23477888999999999865432211 2333
Q ss_pred -ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 94 -DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 94 -~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+.++.++|++.+.++.+....|..|.+.+... ........ .....=.+..|+.....+|++..||++.|||+
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENIYEA---PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccc---eeeeeEec---ccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 378899999999999999999999998765421 11121111 12233467889998899999999999999998
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
+.-...... .......|.+.+..+.|++.|
T Consensus 233 R~~~tpm~~-------~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 233 RNMATPMAE-------ISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred cccccchhh-------hcccCCCCCCceEEEEecCCC
Confidence 632211110 111112377888888888755
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-07 Score=72.49 Aligned_cols=160 Identities=13% Similarity=0.179 Sum_probs=97.9
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCe-eEEe--EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECV--SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 127 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~--~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~ 127 (281)
..+..+|.+++++.+-.+....+++.....+ .+.. .........++.+...-.....-.++....+.+|.+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---- 141 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---- 141 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc----
Confidence 4445677788888777777666666543332 1111 11111222233333333322333444555666664332
Q ss_pred CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC
Q 023500 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207 (281)
Q Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (281)
+.+. ..-||-..+..++|+||+++++++.+|..|++-... .. -.+..+.-.|..-|..++..+
T Consensus 142 -~~~~-----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp----a~-------f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 142 -GRCE-----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP----AT-------FVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred -cCcc-----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC----cc-------cchhhhccccHhheeeeeecc
Confidence 1111 223899999999999999999999999999984221 00 011122224777788888888
Q ss_pred CceeeecCCCCcEEEEecccCCCc
Q 023500 208 EGIIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 208 ~~~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+..+++++.|+++++|+...+...
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 888999999999999988765443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=69.43 Aligned_cols=148 Identities=15% Similarity=0.273 Sum_probs=88.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-----CCcEEEEEecCCCeeEEeEee
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~~w~~~~~~~~~~~~~~ 88 (281)
.++.+++++.||.+.+++... .+........-.....+.+.-..+..+.+++. -+..+.|++++.......
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--- 175 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--- 175 (319)
T ss_pred cCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence 457889999999999987543 11111111100111112222233455555432 123455655433221110
Q ss_pred cCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEEeeCCCc
Q 023500 89 QGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLT 166 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~ 166 (281)
..-...|.+++-||..+ +++.|+.||.+-+||.....+ . .....+|.+.++.+-|+| +++.|++|++||.
T Consensus 176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----P---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----h---HHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 01123488999999765 567888899999998765421 1 112247899999999998 4679999999999
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
+-.||..
T Consensus 248 lw~wdas 254 (319)
T KOG4714|consen 248 LWHWDAS 254 (319)
T ss_pred EEEEcCC
Confidence 9999764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=81.45 Aligned_cols=212 Identities=17% Similarity=0.346 Sum_probs=136.3
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.|+.+.|+|+. ..+|+++.|..+..||...... ++............|+|+.-...+.+.+..+.|++||++.+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 67889999999965 5899999999999999865543 355555556667889998844444555666889999998776
Q ss_pred eeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. ++..+++|...|+.+.|+.. ...+.+++.|++|+.|+.+.......+.+ ....+++.-+|-|-++-..
T Consensus 192 ~--pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--------tt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 192 T--PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--------TTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred c--ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec--------cccCcceeccccccCceeE
Confidence 4 45677889888999888764 33688999999999998776533222111 1234567677777554222
Q ss_pred E--eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC-----------CCceeeecCCCCcEEEEecc
Q 023500 160 S--CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-----------REGIIASGAADDSVQFFVES 226 (281)
Q Consensus 160 s--~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~~d~~~~~~~~~ 226 (281)
+ --.+.++-+++-+...... ......+++..+.+ |+..|..+.|- .+..+++=+.|..+++|-+.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~-n~~~~~~pVh~F~G-H~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEW-NVFDLNTPVHTFVG-HDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eccccCCeeeeeccccchhhhh-ccccCCcceeeecC-cchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2 1112233333222110000 00112245566654 66666554442 13468889999999999654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=73.23 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=86.4
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEE----ecCCCcEE----EEEecCCCeeEEeEeec-CCcccee
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLAT----CGRDKSVW----IWEVMPGNEFECVSVLQ-GHAQDVK 96 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s----~~~d~~v~----~w~~~~~~~~~~~~~~~-~~~~~v~ 96 (281)
+.++.....+.+.+..+..-..+ .++.||- ++..+.| .+.++.+. +|++...+ .+++.+.. .....+.
T Consensus 186 l~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVI 263 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcce
Confidence 34443333343333333322233 5777876 4555544 34445433 34443322 23332222 3566799
Q ss_pred EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 97 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 97 ~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
|++++|+...++.|+.||+|.+||....- .... ...-.++.++|||+|..+++|+.-|.+.+||+.+..
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLA----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCe-------eeee----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999999999999999875431 1111 122346789999999999999999999999987654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=79.46 Aligned_cols=176 Identities=14% Similarity=0.314 Sum_probs=113.5
Q ss_pred eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC----eeEEeEeecCCccceeEEEecCCCCeEEEEecCCe
Q 023500 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 40 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
+..+.||...|..++--.+.+-+++++.|++|++|.+++.. ...|..++++|...|..+.|-.+..++++ .|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 45678999999888665566779999999999999998642 23477889999999999999888777766 7999
Q ss_pred EEEEeCCCCCCCCceeeeeee-eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 116 IKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
|.+||.=... .+.+.. .+..+....|.|+.--...-.++.|+...+++++|.+...... +|+ .|..+
T Consensus 806 iHlWDPFigr-----~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~-----E~k-Vcna~- 873 (1034)
T KOG4190|consen 806 IHLWDPFIGR-----LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC-----ELK-VCNAP- 873 (1034)
T ss_pred ceeecccccc-----hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee-----eEE-eccCC-
Confidence 9999753221 011111 1112223445554321222245556889999999876432210 011 11111
Q ss_pred ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCC
Q 023500 195 YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 195 ~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 229 (281)
..+..+.++..-+.| .++++-++|.+...+.+.+.
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 234567777777665 46667788888887665543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-08 Score=80.04 Aligned_cols=169 Identities=21% Similarity=0.373 Sum_probs=111.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-----CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|+..|+.++--.+.+-+++++.|.++++|.... +...|..+++.|+.+|.++.|-.+-+.++++ |+-|.+||-
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 455566554333455678999999999998532 2233677889999999999998887777765 678999996
Q ss_pred cCCCeeEEeEeecCC--ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 77 MPGNEFECVSVLQGH--AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
..++....+.--..| ...|.|+.=-...-+++.++...+||++|...- .|.+..++... .+..+.+.+++..+.
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVcna-~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC---EWTCELKVCNA-PGPNALTRAIAVADK 887 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc---cceeeEEeccC-CCCchheeEEEeccC
Confidence 555432111111112 223344321111224455588899999976543 35444443321 234567889999999
Q ss_pred CCEEEEeeCCCcEEEEeCCccc
Q 023500 155 GDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
|..++.+-..|+|.+.|.+.++
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCc
Confidence 9999999999999999887554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00013 Score=60.41 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=92.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCC-cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDA-TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~-~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|....+..+++-++.|..|| .+-|||..+++ ++.+++.-+.|.+++.+|+|++++.+.....+.+.|+.+++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 345577778888888889999999 89999987764 45667777899999999999999999999999999998876
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCC----eEEEEeCCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAED 123 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----~v~~w~~~~ 123 (281)
.. ..-+....-|+...|||++..+|-+=-+| .|+++|++.
T Consensus 435 v~---~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 435 VR---LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ee---EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 42 22334456789999999999988665555 788998765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=73.76 Aligned_cols=248 Identities=17% Similarity=0.283 Sum_probs=147.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+..|..+.|+.+.+-|-|...+|.|.+|-...+++-.--.=.-.+..|.+++|+.+|..|...-.||.|.|=.+...+.
T Consensus 70 H~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 70 HNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred CcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 78899999999999999999999999999877765421111123456788999999999998888888877665543221
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC--CceeeeeeeeccCCccccEEEEEEc-------
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD--NWHCVQTISESNNGHSSTIWALSFN------- 152 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~------- 152 (281)
+. ..+++. ....+.|+|+...++.+-..|.+.++|.+..-.. ...|.....-.....+..+..+.|.
T Consensus 150 wg--KeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v 225 (1189)
T KOG2041|consen 150 WG--KELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV 225 (1189)
T ss_pred cc--hhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence 11 111221 2346789999998888888899999976543111 0111111111111112234455553
Q ss_pred -cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeee-cCCCC---------cEE
Q 023500 153 -AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS-GAADD---------SVQ 221 (281)
Q Consensus 153 -~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d~---------~~~ 221 (281)
|+...|+.|-..|.+++.-... +. .+.... ..-.+....|+++|-+++ ++.+. .+.
T Consensus 226 ~pdrP~lavcy~nGr~QiMR~eN------D~----~Pvv~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 226 PPDRPRLAVCYANGRMQIMRSEN------DP----EPVVVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred CCCCCEEEEEEcCceehhhhhcC------CC----CCeEEe---cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 4667899999999988762211 00 111111 123456678888875444 33332 222
Q ss_pred EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+|. ++...+...+.-...|++++|-..|-+ ++ -+-|+.|.+=+++
T Consensus 293 Fys----------p~G~i~gtlkvpg~~It~lsWEg~gLr-iA-~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 293 FYS----------PYGHIVGTLKVPGSCITGLSWEGTGLR-IA-IAVDSFIYFANIR 337 (1189)
T ss_pred Eec----------cchhheEEEecCCceeeeeEEcCCceE-EE-EEecceEEEEeec
Confidence 221 111223334445677999999866543 33 3347777765554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-07 Score=69.69 Aligned_cols=226 Identities=18% Similarity=0.330 Sum_probs=130.3
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC--eeEEeEeecCC------------ccceeEEEecCCCC--eEEEE
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--EFECVSVLQGH------------AQDVKMVQWHPTMD--VLFSC 110 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~~~~~~~~~~~------------~~~v~~v~~~p~~~--~l~s~ 110 (281)
.+.|+++.|...|.++++|...|.|.++.=.... ++.....+++| ...|..+.|..+.+ .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999988632211 11112223333 34677888876543 56777
Q ss_pred ecCCeEEEEeCCCCCC----------------C----Cce--------------eeeeeeeccCCccccEEEEEEccCCC
Q 023500 111 SYDNTIKVWWAEDTDS----------------D----NWH--------------CVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 111 s~d~~v~~w~~~~~~~----------------~----~~~--------------~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+.|.+|++|.+..... . +.+ +.........+|+-.++++.|+.+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999998754310 0 000 00000011246888899999999988
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
.++++ .|-.|.+|+++....... ....++.. +. -....|++..|+|. ..++=.++.|.+.+-+.+...+.+.+
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFn--IVDiKP~n-me-eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFN--IVDIKPHN-ME-ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeec-cceeeeeccccccCCceE--EEeccCcc-HH-HHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 77765 577899997754321100 00000000 00 01234566677774 35666677889998877643332222
Q ss_pred cc--eeee-----eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 235 SY--KMLL-----KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 235 ~~--~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.. .... ....+-.+.|..+.|++.|+ ++++-. =-+|+|||+..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvnm 310 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVNM 310 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEeccc
Confidence 11 0000 00111234577899999876 454433 36799999864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-05 Score=61.58 Aligned_cols=164 Identities=16% Similarity=0.291 Sum_probs=101.0
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-------CCCCeeEEEEcCC------CCEEEEecCCCcEEE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-------HENEVKSVSWNAS------GTLLATCGRDKSVWI 73 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~------~~~l~s~~~d~~v~~ 73 (281)
+.++|+||+.+||.+...|+|++||..+.. +..+.+ -...|..+.|-+. ...|+.-..+|.++-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~---lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSE---LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccce---eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 468999999999999999999999976542 112211 2245666667432 124666667777777
Q ss_pred EEecCC--CeeEEe--EeecCC-ccceeEEEecCCCCeEEEEec-CC----------eEEEEeCCCCC----------CC
Q 023500 74 WEVMPG--NEFECV--SVLQGH-AQDVKMVQWHPTMDVLFSCSY-DN----------TIKVWWAEDTD----------SD 127 (281)
Q Consensus 74 w~~~~~--~~~~~~--~~~~~~-~~~v~~v~~~p~~~~l~s~s~-d~----------~v~~w~~~~~~----------~~ 127 (281)
+-+..+ +.++.. ..+..| ...|+++.++|..++|+.|+. .. -+..|.+-+.. ..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 765332 222222 223333 567999999999987665543 22 24456543210 00
Q ss_pred C-----ceeeeeee-----eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 128 N-----WHCVQTIS-----ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 128 ~-----~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
. ......+. .....-...|..+..||+++.|++...+|.|.+|++-
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 0 00111110 0011224668899999999999999999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-05 Score=76.16 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeee------eecCCC------CCeeEEEEcCCCC-EEEEecCCCcEE
Q 023500 7 RSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVA------TLEGHE------NEVKSVSWNASGT-LLATCGRDKSVW 72 (281)
Q Consensus 7 ~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~------~~~~h~------~~v~~v~~~~~~~-~l~s~~~d~~v~ 72 (281)
+.++|+| ++.++++...++.|.+|+..++...... ...++. ..-..++++|++. ++++.+.++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 4689999 5677788888899999987665322110 001111 1235689999988 456667789999
Q ss_pred EEEecCCCeeEEeE----------eecCC--------ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 73 IWEVMPGNEFECVS----------VLQGH--------AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 73 ~w~~~~~~~~~~~~----------~~~~~--------~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
+||+..+....... .+..+ -..-..+++.|+++++++-+.++.|++|+.+... +.+
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~------v~t 839 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR------VTT 839 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe------EEE
Confidence 99987543211000 00000 0123578899999999999999999999876432 111
Q ss_pred eee----------ccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 135 ISE----------SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 135 ~~~----------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
+.. ...++-..+..++++++++.+++-+.++.|++||.+.+
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 110 00122235678999999998888889999999998644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.9e-05 Score=68.49 Aligned_cols=200 Identities=14% Similarity=0.218 Sum_probs=120.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe--cC--C
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV--MP--G 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~--~~--~ 79 (281)
+.|..+.|..++.-++.+..+|.|.+-|+.+...+++... ...|.+.+||||+..++-...++++.+-+- .. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 4688888998888888888999999988888777666554 478999999999998877766666654432 00 0
Q ss_pred Cee--------EEeE--------eecC---------------------CccceeEEEecCCCCeEEE-----EecCCeEE
Q 023500 80 NEF--------ECVS--------VLQG---------------------HAQDVKMVQWHPTMDVLFS-----CSYDNTIK 117 (281)
Q Consensus 80 ~~~--------~~~~--------~~~~---------------------~~~~v~~v~~~p~~~~l~s-----~s~d~~v~ 117 (281)
+.. +.+. .+.+ ..+.=++|.|-.++++++. .....+++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 000 0000 0110 1112245889999998876 33337999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee---CCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
+|+-+..- ..... .....=.+++|-|.|..+++-. .|+.|.+|..+..... .....-
T Consensus 226 V~drEg~L-------ns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg----------~f~l~~ 285 (1265)
T KOG1920|consen 226 VYDREGAL-------NSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG----------EFVLPF 285 (1265)
T ss_pred Eecccchh-------hcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc----------ccccCC
Confidence 99765211 11111 1112235799999998888753 4567888854321110 000000
Q ss_pred -ccCcceEEEEeCCCceeeec----CCCCcEEEEecc
Q 023500 195 -YHDRTIFSVHWSREGIIASG----AADDSVQFFVES 226 (281)
Q Consensus 195 -~~~~~v~~~~~~~~~~~~~~----~~d~~~~~~~~~ 226 (281)
....++..++|..++-++++ ..+..+++|..+
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 12233778899887654443 344458999553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-07 Score=68.14 Aligned_cols=73 Identities=23% Similarity=0.465 Sum_probs=61.3
Q ss_pred cceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEec
Q 023500 4 RTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~ 77 (281)
+.|.+++-+|.. .++++|+.||.+-|||...... ++..++.|+.+++-+-|+| ++..|++++.||.+..||-.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 347888889954 5778899999999999866542 4667789999999999999 78999999999999999863
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=73.49 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=79.2
Q ss_pred eEEEEcCCC-CEEEEe----eCCCc----EEEEecCCCceeeeeee-cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 7 RSCAWSPSG-KLLATA----SFDAT----TCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 7 ~~~~~~~~~-~~l~tg----~~d~~----i~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.++.|+... ..+.|. +.+|. -++|+...++...+... -.....|.|++++|+...++.|+.||+|.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 456676633 333222 23443 35677766555444322 246788999999999999999999999999998
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
..+-. ......=..+.++|||++..++.|+..|.+.+||+.-.
T Consensus 289 ~~~~t-----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 289 TRGVT-----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCCee-----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 64422 11122234588999999999999999999999998644
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=68.00 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=99.4
Q ss_pred EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
++.|.+-.|.+-++..+.. ..+. ..+.|.+++|+..+++++.|+..|.|...|+.....+...+...+. |
T Consensus 228 fs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-----h 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-----H 297 (425)
T ss_pred ecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-----c
Confidence 5556666777777654431 1222 3567888999999999999999999999999776555444555553 7
Q ss_pred cccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc---ceEEEEeCCCceeeecCCCC
Q 023500 143 SSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR---TIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 143 ~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~ 218 (281)
...|+++..-. ++.+|++.+.+|+|++||.+..+.. ..+.++.+ |-. .+...--..+|.+++++.|-
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~--------~~V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK--------KSVMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcc--------cceeeeec-ccccccccccccccccceEEEccCee
Confidence 78888887766 6778999999999999998754431 11112221 111 11111112367899999999
Q ss_pred cEEEEecccCC
Q 023500 219 SVQFFVESKDD 229 (281)
Q Consensus 219 ~~~~~~~~~~~ 229 (281)
..|+|....+-
T Consensus 369 ytRiWsl~~gh 379 (425)
T KOG2695|consen 369 YTRIWSLDSGH 379 (425)
T ss_pred EEEEEecccCc
Confidence 99999876543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-06 Score=69.19 Aligned_cols=112 Identities=22% Similarity=0.468 Sum_probs=83.1
Q ss_pred ccceeEEEEcCCCCEEEEe--eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg--~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~ 77 (281)
.++|.++.|+|+|+-++.+ -+=-.+.|||.... ++..+. .++=+++-|+|.|++|+.+|.+ |.+-+||+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 4789999999999876543 34468899987553 344443 5777899999999999888765 689999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec------CCeEEEEeCCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAEDT 124 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~------d~~v~~w~~~~~ 124 (281)
+. +++..+. ....+-..|+|+|.++++++. |+.++||+....
T Consensus 345 n~---K~i~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NR---KLIAKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ch---hhccccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 53 2344443 345677899999999988775 578889976543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-07 Score=77.77 Aligned_cols=205 Identities=14% Similarity=0.204 Sum_probs=122.5
Q ss_pred ceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEec----CCCcEEEEEec
Q 023500 5 TVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCG----RDKSVWIWEVM 77 (281)
Q Consensus 5 ~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~----~d~~v~~w~~~ 77 (281)
.+.|++++- +..+++.|..+|.|.+-.....-........+|....++++|++ |...||+|- .|-.+++||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456666554 33589999999999887543222121223456888999999999 566677663 24589999997
Q ss_pred CC--CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-C
Q 023500 78 PG--NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-K 154 (281)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 154 (281)
.. .+++...-..+--....+++|-.+..++++|.....+.++|+...... .. .-.+..+..+..+| .
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~----~~------svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS----VS------SVNTKYVQGITVDPFS 207 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----hh------hhhhhhcccceecCCC
Confidence 55 221111101112334568888888889999999999999877632110 00 11234456677777 6
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCC-CcEEEEecc
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAAD-DSVQFFVES 226 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d-~~~~~~~~~ 226 (281)
+.++++-. ||.+.+||.. .+.. ..+ ..+..-.......+..++|.| .|.+++...| +.++++++.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~-rnie--npl---~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTY-RNIE--NPL---QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccch-hhhc--cHH---HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 66787655 8999999942 1110 000 000000000122466777776 5777777765 577888654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-05 Score=64.33 Aligned_cols=145 Identities=19% Similarity=0.354 Sum_probs=93.9
Q ss_pred EEEcCCCC-E--EEEeeCCC---------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEE--ecCCCcEEEE
Q 023500 9 CAWSPSGK-L--LATASFDA---------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT--CGRDKSVWIW 74 (281)
Q Consensus 9 ~~~~~~~~-~--l~tg~~d~---------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~d~~v~~w 74 (281)
..|++-|+ + |++..-|. ++.+.+..+. .+...+. -.++|.++.|+|+|+.++. |-+=-.+.++
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~--s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE--SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc--eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 45777665 3 33444443 3445444422 2233332 4689999999999987654 3445578888
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
|+.-. .+..+ ....=+++-|+|.+++++.++.+ |.+-+||+... +++..+.. ...+-.+|
T Consensus 300 nlr~~----~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i~~~~a------~~tt~~eW 362 (566)
T KOG2315|consen 300 NLRGK----PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLIAKFKA------ANTTVFEW 362 (566)
T ss_pred cCCCC----EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhcccccc------CCceEEEE
Confidence 87522 23333 23445788999999999888876 58999988753 23333321 22345799
Q ss_pred ccCCCEEEEeeC------CCcEEEEeCC
Q 023500 152 NAKGDKLVSCSD------DLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~------d~~i~~w~~~ 173 (281)
+|||++++|+.. |..++||+..
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999999874 5678899865
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00021 Score=60.22 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=133.9
Q ss_pred cceeEEEEcCCCCEEEEeeC-----------CCcEEEEecCCCceeeeeeecC--CCCCee-EEEEcCCCCEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASF-----------DATTCIWEDVGGDYECVATLEG--HENEVK-SVSWNASGTLLATCGRDK 69 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~-----------d~~i~lw~~~~~~~~~~~~~~~--h~~~v~-~v~~~~~~~~l~s~~~d~ 69 (281)
..|..+.|||.-+||+|=+. ...|+|||..++.. ...+.. -...++ -+.||.|+.++|-... .
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l--krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL--KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-N 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch--hcceeccCCCccccceEEeccCCceeEEecc-c
Confidence 45788999999999998652 25799999988753 233332 122333 3589999999987766 5
Q ss_pred cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC--C---eEEEEeCCCC-------------------C
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--N---TIKVWWAEDT-------------------D 125 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d--~---~v~~w~~~~~-------------------~ 125 (281)
+|-+++.......+ .+.+ .-+.|....|+|.+++||--+.. . .+-+-.+.+. .
T Consensus 327 sisIyEtpsf~lld-~Ksl--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 327 SISIYETPSFMLLD-KKSL--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred eEEEEecCceeeec-cccc--CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 68888764322111 1111 23457778899987776532211 0 1112111110 0
Q ss_pred CCCceeeeeeeecc------------------------CCccccEEEEEEccCCCEEEEee---CCCcEEEEeCCccccc
Q 023500 126 SDNWHCVQTISESN------------------------NGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQ 178 (281)
Q Consensus 126 ~~~~~~~~~~~~~~------------------------~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~~w~~~~~~~~ 178 (281)
++.+-|+..-.... ..-...|...+|-|.|+.+++-+ ...++.+|.++..
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~--- 480 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN--- 480 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC---
Confidence 11111111000000 01135577788889888766544 2347777865421
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCCcee----eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGII----ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
...++.+.. ........+.|+|.|.+ +.++..+.+.+++..-.+... .....|. .-+.+.
T Consensus 481 ----~~~~~lVk~---~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~--------~~~~eh~-~at~ve 544 (698)
T KOG2314|consen 481 ----IKKPSLVKE---LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD--------TASPEHF-AATEVE 544 (698)
T ss_pred ----CCchhhhhh---hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh--------ccCcccc-ccccce
Confidence 011111111 12234467889998842 234467888998764321111 1112332 356789
Q ss_pred EcCCCCeeEEEeCC------CCeEEEEEcc
Q 023500 255 WSPGERRLLASASD------DGMIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~------Dg~v~iw~~~ 278 (281)
|.|.|++ +++++. |..-+||.+.
T Consensus 545 WDPtGRY-vvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 545 WDPTGRY-VVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ECCCCCE-EEEeeehhhhccccceEEEEee
Confidence 9999875 455543 4445666654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0005 Score=58.50 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=81.8
Q ss_pred ceeEEEEcCCCCE-EEEeeCC---CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCC--cEEEEEec
Q 023500 5 TVRSCAWSPSGKL-LATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWEVM 77 (281)
Q Consensus 5 ~i~~~~~~~~~~~-l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~~w~~~ 77 (281)
.+..-.|+|||+. ++..+.. ..|.++|..+++...+.. ..+......|+|||+.|+ +.+.++ .|.++++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 3456789999984 6644443 467788887776554443 345566778999998765 444444 56666664
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+. .. .+..+........|+|+++.++-.+. .+ .|.+.+++... .+.+.. .+. ....|+|+
T Consensus 266 ~g~-~~---~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~------~~rlt~--~g~----~~~~~SPD 329 (419)
T PRK04043 266 TKT-LT---QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS------VEQVVF--HGK----NNSSVSTY 329 (419)
T ss_pred CCc-EE---EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC------eEeCcc--CCC----cCceECCC
Confidence 443 22 22333322345689999987665553 34 45555554332 111211 111 12489999
Q ss_pred CCEEEEeeCC
Q 023500 155 GDKLVSCSDD 164 (281)
Q Consensus 155 ~~~l~s~~~d 164 (281)
++.++-....
T Consensus 330 G~~Ia~~~~~ 339 (419)
T PRK04043 330 KNYIVYSSRE 339 (419)
T ss_pred CCEEEEEEcC
Confidence 9987766543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00011 Score=64.85 Aligned_cols=196 Identities=11% Similarity=0.176 Sum_probs=120.5
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCC-eeEEEEcCCCCEEEEecCCCc-----EEEEEecCC--Ce
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNASGTLLATCGRDKS-----VWIWEVMPG--NE 81 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~--~~ 81 (281)
.|++.+..+|.|++||.|.+.+ ..+.....++++... |..+..-....+|++-+.|+. +++|++..- +.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln---~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN---SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec---ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4788999999999999998875 334455777777777 433333333467888777654 899998643 12
Q ss_pred -eEEe---Eeec----CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 82 -FECV---SVLQ----GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 82 -~~~~---~~~~----~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
++++ +.+. ....++.+++.+.+-+.++.|=.+|.|.++.-+-.+....+. ... ..-..+|+.+.+..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~---~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYS---HRGKEPITGLALRS 181 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eee---ccCCCCceeeEEec
Confidence 3444 2221 134578899999998899999999999988433221111111 111 11257899999988
Q ss_pred CCCE-EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecc
Q 023500 154 KGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVES 226 (281)
Q Consensus 154 ~~~~-l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~ 226 (281)
++.. +.... ...|.+|.+..+.+ ..+. ...+..++.|..+++... ++. +...-+.+|+..
T Consensus 182 d~~s~lFv~T-t~~V~~y~l~gr~p----------~~~~-ld~~G~~lnCss~~~~t~qfIc-a~~e~l~fY~sd 243 (933)
T KOG2114|consen 182 DGKSVLFVAT-TEQVMLYSLSGRTP----------SLKV-LDNNGISLNCSSFSDGTYQFIC-AGSEFLYFYDSD 243 (933)
T ss_pred CCceeEEEEe-cceeEEEEecCCCc----------ceee-eccCCccceeeecCCCCccEEE-ecCceEEEEcCC
Confidence 8775 33333 44588887752211 0111 123556677777766544 333 334457777554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=68.92 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=117.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
+.+.|++++ +++|+-|..+|.+.+++..... .+...|... ..+|.+++|||.||+|.+-.+-++++.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~- 106 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI- 106 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc-
Confidence 455666665 6799999999999999765432 222224333 558999999999999999988766542
Q ss_pred EeEeecCCccceeEEEecCC-----CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 84 CVSVLQGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~-----~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
..+. -...+.+++++|+ ...+++|+.-| +.++.-. -.+.+..+ .+. .-.+.|.++.|.. .++
T Consensus 107 --~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~--wlgnk~~v-~l~----~~eG~I~~i~W~g--~lI 173 (846)
T KOG2066|consen 107 --TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN--WLGNKDSV-VLS----EGEGPIHSIKWRG--NLI 173 (846)
T ss_pred --eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh--hhcCccce-eee----cCccceEEEEecC--cEE
Confidence 1122 2346899999998 34789999888 6665211 01111111 111 2247899999963 356
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
|=...+| +++||+..+++......+.... ..+.-...+.|.++..++.|-.| ++++..++
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCCC------CcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 5555555 9999987665443322221000 01222345778888777776655 56777665
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=59.23 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 1 MHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
+|...|..++|+|..+ ++..++-++.|+|.|..+.. .+..+..| ..+++++|.-+ .++|..|-.+|.|.++|++.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3667899999999887 78889999999999988764 35566666 88999999875 46789999999999999986
Q ss_pred CC
Q 023500 79 GN 80 (281)
Q Consensus 79 ~~ 80 (281)
..
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 54
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=66.80 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=89.6
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-----CCEEEEecCCCcEEEEEecCCCeeEEeEee
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-----GTLLATCGRDKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~ 88 (281)
+|++++||+.||++.|-...+.+..+... ...++.+|+++|+ .+++++||..| +.+..=.=-+....+ .+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l 156 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL 156 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee
Confidence 59999999999999998776655433333 5589999999998 56899999988 665531101111111 34
Q ss_pred cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccC--CccccEEEEEEccCCCEEEEeeCCCc
Q 023500 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN--GHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
....+.|.+++|..+ ++|-++ |--|+++|..... .+..++.+.. ....-...+.|.++.++++..+ .+
T Consensus 157 ~~~eG~I~~i~W~g~--lIAWan-d~Gv~vyd~~~~~-----~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~--d~ 226 (846)
T KOG2066|consen 157 SEGEGPIHSIKWRGN--LIAWAN-DDGVKVYDTPTRQ-----RLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG--DS 226 (846)
T ss_pred ecCccceEEEEecCc--EEEEec-CCCcEEEeccccc-----eeeccCCCCCCCCcccCCCceEecCCCeEEEecC--Ce
Confidence 455678999999864 566655 4457899876542 1111211110 0011234678877765444333 35
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
|++..++
T Consensus 227 v~i~~I~ 233 (846)
T KOG2066|consen 227 VKICSIK 233 (846)
T ss_pred EEEEEEe
Confidence 8888765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00044 Score=63.50 Aligned_cols=209 Identities=14% Similarity=0.320 Sum_probs=119.9
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC----
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE---- 122 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~---- 122 (281)
++.|.++.|..++..++.+..+|.|.+-|..... .+.+. .-...|.+.+|+|+.++++-.+.+.++.+-.-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 3578899999998888888888999888764332 22222 235679999999999999888888887665321
Q ss_pred -CCCC----C--------Cc-eeeeeeeec--------c----C--C---ccccEEEEEEccCCCEEEEe-----eCCCc
Q 023500 123 -DTDS----D--------NW-HCVQTISES--------N----N--G---HSSTIWALSFNAKGDKLVSC-----SDDLT 166 (281)
Q Consensus 123 -~~~~----~--------~~-~~~~~~~~~--------~----~--~---h~~~v~~~~~~~~~~~l~s~-----~~d~~ 166 (281)
.... . .| +....+.-. . + + ....=..+.|..||+++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0000 0 00 000000000 0 0 0 00112358999999998883 23379
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec----CCCCcEEEEecccCCCcCCccceeeeee
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG----AADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
|++||.+ +..+.... .....-.+++|-|.|.+++. .+|+.+.+|-.++ +..+. +.-.
T Consensus 224 irV~drE-g~Lns~se------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG--L~hg~----f~l~ 284 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSE------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG--LRHGE----FVLP 284 (1265)
T ss_pred EEEeccc-chhhcccC------------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCC--ccccc----cccC
Confidence 9999877 32221111 11223345677777654432 2455677774432 22211 1111
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEE---eCCCCeEEEEEccc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLAS---ASDDGMIKIWELAN 279 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s---~~~Dg~v~iw~~~~ 279 (281)
...-..++..++|+.++. ++|. +.....|++|=+.|
T Consensus 285 ~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CcccccchheeeecCCCC-ceeeeecccccceEEEEEecC
Confidence 122233489999999875 5665 55555699997654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00048 Score=61.07 Aligned_cols=201 Identities=19% Similarity=0.264 Sum_probs=118.9
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc-eeEEEecCCCCeEEEEecCCe-----EEEEeCCCCC-CC
Q 023500 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQWHPTMDVLFSCSYDNT-----IKVWWAEDTD-SD 127 (281)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~s~s~d~~-----v~~w~~~~~~-~~ 127 (281)
|++.+..++.|+.+|.|.+.+- ..+....+.++... |..+..--..+.|++.++|.. +++|+++..+ +.
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~----s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNS----SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EcCCCceEEEeeccccEEEecc----cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 5788899999999998866642 22233556666555 343333333468888888864 8999998763 23
Q ss_pred Cceeeeeee--e-ccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE
Q 023500 128 NWHCVQTIS--E-SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 128 ~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
+-.|+.... . .....+.++.+++.+.+-..++.|-.+|.|..+.-+.. ...+. + ..+......+|+.+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~---RDrgs---r--~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL---RDRGS---R--QDYSHRGKEPITGLA 178 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch---hcccc---c--eeeeccCCCCceeeE
Confidence 244552221 1 11223567788999988889999999999998843321 11111 1 112222456777777
Q ss_pred eCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 205 WSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 205 ~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+-.++. +.++ +-..+.+|...... +. ......|...++|.++++....++ +++ +..|.+|+..
T Consensus 179 ~~~d~~s~lFv~-Tt~~V~~y~l~gr~----p~----~~~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 179 LRSDGKSVLFVA-TTEQVMLYSLSGRT----PS----LKVLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSD 243 (933)
T ss_pred EecCCceeEEEE-ecceeEEEEecCCC----cc----eeeeccCCccceeeecCCCCccEE-Eec-CceEEEEcCC
Confidence 665442 2222 33456777665321 11 122345778899999998654444 443 4577787754
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0016 Score=51.28 Aligned_cols=224 Identities=12% Similarity=0.133 Sum_probs=123.7
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc-CCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 8 SCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
...|.+ ++.++.+--..+.|..|+..++... ...+. . ...+.+. +++.++++. .+ .+.++|...+. .+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~---~-~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~-~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLP---G-PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGK-VTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESS---S-EEEEEEECTTSEEEEEE-TT-CEEEEETTTTE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecC---C-CceEEEEccCCEEEEEE-cC-ceEEEecCCCc-EEEE
Confidence 467888 7777877777888999998776532 22222 2 5677787 665555554 43 34555876543 2333
Q ss_pred Eee--cC-CccceeEEEecCCCCeEEEEecC--------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 86 SVL--QG-HAQDVKMVQWHPTMDVLFSCSYD--------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 86 ~~~--~~-~~~~v~~v~~~p~~~~l~s~s~d--------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
... .. .....+.+++.|+++++++.... +.+..++.. .. +..+.. .-...+.++|+|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~------~~~~~~----~~~~pNGi~~s~d 144 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK------VTVVAD----GLGFPNGIAFSPD 144 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE------EEEEEE----EESSEEEEEEETT
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce------EEEEec----CcccccceEECCc
Confidence 332 12 34567899999999988886655 345555433 11 111111 1234678999999
Q ss_pred CCEEE-EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC--cceEEEEeCCCce-eeecCCCCcEEEEecccCCC
Q 023500 155 GDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD--RTIFSVHWSREGI-IASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 155 ~~~l~-s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~ 230 (281)
++.|+ +-+..+.|..++.+.... .+.....+..... .....++.+.+|. +++....+.+.+++...
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--- 214 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGG-------ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--- 214 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTC-------CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS---
T ss_pred chheeecccccceeEEEecccccc-------ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc---
Confidence 98765 556677777776542110 0011111111111 2355677777664 44444667777776542
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEc-CCCCeeEEEeC
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWS-PGERRLLASAS 267 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~s~~ 267 (281)
..... +. .. ...+++++|. ++...|++|.+
T Consensus 215 ---~~~~~-i~--~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 ---KLLRE-IE--LP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ---CEEEE-EE---S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred ---cEEEE-Ec--CC-CCCEEEEEEECCCCCEEEEEeC
Confidence 11111 11 12 2368999994 55567777764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.2e-07 Score=75.15 Aligned_cols=208 Identities=14% Similarity=0.212 Sum_probs=124.5
Q ss_pred CCeeEEEEcCCC--CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEe----cCCeEEEEe
Q 023500 48 NEVKSVSWNASG--TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCS----YDNTIKVWW 120 (281)
Q Consensus 48 ~~v~~v~~~~~~--~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s----~d~~v~~w~ 120 (281)
..+.|++++.+- ..++.|..+|.|-+-.+..... ....+..+|...+++++|++-.. .|++|- .|..++|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456788776543 3578889999999988765431 12445678889999999999644 555542 345899999
Q ss_pred CCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcce
Q 023500 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 200 (281)
+.+.-..+.... .++. +......+++|..+.+++.+|+...++.++|++...- +.....+..+
T Consensus 136 i~s~ltvPke~~-~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------------~~~svnTk~v 198 (783)
T KOG1008|consen 136 INSLLTVPKESP-LFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------------SVSSVNTKYV 198 (783)
T ss_pred cccccCCCcccc-cccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhh-------------hhhhhhhhhc
Confidence 987522221111 1111 1123345788888888999999998999998752110 0001122233
Q ss_pred EEEEeCC-C-ceeeecCCCCcEEEEec-ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC-CeEEEEE
Q 023500 201 FSVHWSR-E-GIIASGAADDSVQFFVE-SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD-GMIKIWE 276 (281)
Q Consensus 201 ~~~~~~~-~-~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D-g~v~iw~ 276 (281)
.-+..+| . +++++ ..|+.+.+|+. ... +.+ ...+......-...+..++|+|....++++...| ++|++++
T Consensus 199 qG~tVdp~~~nY~cs-~~dg~iAiwD~~rni---enp-l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCS-NSDGDIAIWDTYRNI---ENP-LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ccceecCCCCCceec-cccCceeeccchhhh---ccH-HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 3333344 2 34444 45889999973 211 111 1111111122223588999999877788888776 5799998
Q ss_pred cc
Q 023500 277 LA 278 (281)
Q Consensus 277 ~~ 278 (281)
+.
T Consensus 274 i~ 275 (783)
T KOG1008|consen 274 IC 275 (783)
T ss_pred cc
Confidence 75
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00067 Score=56.70 Aligned_cols=235 Identities=16% Similarity=0.280 Sum_probs=128.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---------------C
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---------------K 69 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------------~ 69 (281)
++..+.|||-|++|++... ..|.+|.-.... . +..+. ...|.-+.|+|.+.+|.+=+.. +
T Consensus 34 p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~-~-l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHA-AGVECWGGPSKA-K-LVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred chhheeecCcchheehhhc-cceEEccccchh-h-eeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 5678899999999987553 458899654333 2 33333 3568899999999999985443 3
Q ss_pred cEEEEEecCCCeeEEeEeecCCccc--ee-EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQD--VK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~--v~-~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
.+.+||+..+.. +..+...... .. -++|+-+..+++=. -...++++++.. +.. ......+ ....+
T Consensus 109 ~~~vwd~~sg~i---v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~-n~~-~~p~~~l------r~~gi 176 (561)
T COG5354 109 NVFVWDIASGMI---VFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITD-NIE-EHPFKNL------RPVGI 176 (561)
T ss_pred ceeEEeccCcee---EeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCC-ccc-cCchhhc------cccce
Confidence 589999976642 3444333222 33 67888887766543 345678887522 111 0000111 12446
Q ss_pred EEEEEccCC--CEEEE-----eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-----ec
Q 023500 147 WALSFNAKG--DKLVS-----CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-----SG 214 (281)
Q Consensus 147 ~~~~~~~~~--~~l~s-----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~ 214 (281)
....|+|.+ ..|+. ...++++++|.+-.... +.+. .+....-+.+.|.+.|..+ +-
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-----------l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-----------LVTK-NLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-----------eeee-eeEeecccEEEEecCCceEEEEEEEe
Confidence 677777764 23433 24567788886542111 1110 0111222345555544211 10
Q ss_pred C-CC------CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE-EeCCCCeEEEEEcc
Q 023500 215 A-AD------DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA-SASDDGMIKIWELA 278 (281)
Q Consensus 215 ~-~d------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-s~~~Dg~v~iw~~~ 278 (281)
. ++ ..++++.....+ +.....-.++|...+|.|.+.++.+ +|--+..+.++|+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~----------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERS----------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eecccceeccceEEEEeecccc----------cceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 0 11 233444333211 1111234678999999998876533 33457777777764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=68.13 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---------CcEEEEEecCCCeeEE
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---------KSVWIWEVMPGNEFEC 84 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------~~v~~w~~~~~~~~~~ 84 (281)
+++++.+|..-|+|.|-|++.. +.++++.+|.+.|.+ |.-.|+.|+++|.. .=|+|||++.-+...+
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred cCcEEEeecccceEEeecCCcC--ceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 5688999999999999887654 468899999999865 45578999998864 4568899875543333
Q ss_pred eEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
+.. +.. -..++|+|.-. .++.+|..|...+-|.....+... .+.-+. .-...+.+++++++++.|+.|..
T Consensus 262 I~~---~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~----p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 262 IQF---PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVN----PNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred ccc---ccC-chhhhhcccccceEEEEecccceeeccccccCCCcc-ceeEEc----cCCCcceeEEecCCCceEEEecc
Confidence 221 222 26778899754 577788889888876332211100 011111 11344889999999999999999
Q ss_pred CCcEEEEe
Q 023500 164 DLTIKIWG 171 (281)
Q Consensus 164 d~~i~~w~ 171 (281)
+|.|.+|-
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999995
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0015 Score=54.45 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=105.1
Q ss_pred EcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-cEEEEEecCCCeeEEeEee
Q 023500 11 WSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-SVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 11 ~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~v~~w~~~~~~~~~~~~~~ 88 (281)
|++ +|+++|..|- |+.-|.+...+.. ..-+|.+.|.-..+..++.-++.|-.|+ .+-++|...+. +..+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~ 397 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRI 397 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEe
Confidence 444 6788877763 4555655443322 1235788898888888888888888888 88899976543 3344
Q ss_pred cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC---
Q 023500 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL--- 165 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--- 165 (281)
.+.-..|..++.+|++..++.+.....+-+.|++... ++.+.+ ...+.++..+|||+++.+|-+-.+|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn------v~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN------VRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC------eeEecc---cccceeEEEEEcCCceeEEEecCcceee
Confidence 5556789999999999999998887888888887653 121221 2246789999999999998877665
Q ss_pred -cEEEEeCCccc
Q 023500 166 -TIKIWGADITR 176 (281)
Q Consensus 166 -~i~~w~~~~~~ 176 (281)
.|+++|+..++
T Consensus 469 q~Iklydm~~~K 480 (668)
T COG4946 469 QSIKLYDMDGGK 480 (668)
T ss_pred eeEEEEecCCCe
Confidence 68889876433
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=42.00 Aligned_cols=37 Identities=32% Similarity=0.677 Sum_probs=32.8
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
+...+.+|...|.++.|+|.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556678899999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0014 Score=55.79 Aligned_cols=138 Identities=7% Similarity=0.050 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCEEE-EeeCC--CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC--cEEEEEecCC
Q 023500 6 VRSCAWSPSGKLLA-TASFD--ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPG 79 (281)
Q Consensus 6 i~~~~~~~~~~~l~-tg~~d--~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~~w~~~~~ 79 (281)
....+|+|||+.++ +.+.+ ..|.+++..++....+. .+......-.|+|||+.|+-.+. .+ .|.+.++..+
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 44678999998654 44434 35666676666543333 23332334579999987765543 33 5666666544
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecC---------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
... +.... .. ....|+|++..++..+.. ..|.+.+++... .+.+... + ......
T Consensus 312 ~~~---rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~------~~~LT~~--~---~~~~p~ 374 (419)
T PRK04043 312 SVE---QVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY------IRRLTAN--G---VNQFPR 374 (419)
T ss_pred CeE---eCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC------eEECCCC--C---CcCCeE
Confidence 321 11111 11 124899999987765543 255666654432 1222211 1 122468
Q ss_pred EccCCCEEEEeeC
Q 023500 151 FNAKGDKLVSCSD 163 (281)
Q Consensus 151 ~~~~~~~l~s~~~ 163 (281)
|+|+|+.++-...
T Consensus 375 ~SPDG~~I~f~~~ 387 (419)
T PRK04043 375 FSSDGGSIMFIKY 387 (419)
T ss_pred ECCCCCEEEEEEc
Confidence 9999987666554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=58.70 Aligned_cols=137 Identities=16% Similarity=0.307 Sum_probs=92.7
Q ss_pred ccceeEEEEcCCCCEEEEee--CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---CcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATAS--FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~--~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~~w~~~ 77 (281)
.++|...+|.|.++.+++.+ .+-.+.++|..++ .... .....=+.+.|+|.+++++.+|-| |.+-+|+..
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccc---eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 46889999999988776554 6778888887654 2222 233444678899999999998876 588889864
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEe------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
..+.++..+.+ ...+-+.|+|+++.+.+.. .|+.+++|++..... ...+.+.|
T Consensus 349 --~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------fel~~~~W 407 (561)
T COG5354 349 --GRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------FELTNITW 407 (561)
T ss_pred --CceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh-----------------hhhhhccc
Confidence 22334434433 3466778999999876643 467899998765421 12345777
Q ss_pred ccCCCEEEEeeCCC
Q 023500 152 NAKGDKLVSCSDDL 165 (281)
Q Consensus 152 ~~~~~~l~s~~~d~ 165 (281)
.|.+++..+.+.+.
T Consensus 408 ~p~~~~~ttsSs~~ 421 (561)
T COG5354 408 DPSGQYVTTSSSCP 421 (561)
T ss_pred cCCcccceeeccCC
Confidence 77776666655544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=9e-05 Score=63.33 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=61.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCee-EEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|..+.|+|...++|++..+|.+.+...+- ..+.++.-|..++. +++|.|||+.|+.|-.||+|++.|+..+.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 467789999999999999999998887652 33556665777777 99999999999999999999999997664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0007 Score=60.20 Aligned_cols=108 Identities=20% Similarity=0.365 Sum_probs=82.0
Q ss_pred EEEEcCCCCEEEEeeC----CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGKLLATASF----DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~----d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
-+.|+|.-.+||.++- .|++.||-. +++ +-.... ..-.+.++.|+|..-.|+.|=.-|.+.+|..... +
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tGE--Pqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TGE--PQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---E 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEec-CCC--CCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---e
Confidence 3569999999988874 478899843 332 111111 3344667999998888888888899999986543 2
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
...+...|..+|..+.|+|+|..++++..=|.|.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345567899999999999999999999999999999765
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=63.39 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=89.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|.--+++..+++++.|+.-|.+.+|+..++... .....+-.+.+..+..+++..++|.|++.+.|-++-++...+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34555567888999999999999999988776432 22223344556666789999999999999999999887644333
Q ss_pred EeEee---cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 84 CVSVL---QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 84 ~~~~~---~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
..... ..|...|++++|++++..+++|...|+|.+-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22222 23678899999999999999999999998776554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0086 Score=47.20 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=95.4
Q ss_pred eeEEEEc-CCCCEEEEeeCCCcEEEEecCCCceeeeeeec--C-CCCCeeEEEEcCCCCEEEEecCCCc------EEEEE
Q 023500 6 VRSCAWS-PSGKLLATASFDATTCIWEDVGGDYECVATLE--G-HENEVKSVSWNASGTLLATCGRDKS------VWIWE 75 (281)
Q Consensus 6 i~~~~~~-~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~l~s~~~d~~------v~~w~ 75 (281)
...+++. ++++++++ ..+ .+.++|..+++...+.... . .....+.+++.|+|++.++...... =.+|.
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 4456677 67666655 444 4566688887766555542 2 3346789999999998887654421 24555
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
+........ ....-...+.++|+|+++.| ++-+..+.|..+++...... ......+... ..-...+-.+++..+
T Consensus 120 ~~~~~~~~~---~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-~~~~~~~~~~-~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPDGKVTV---VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-LSNRRVFIDF-PGGPGYPDGLAVDSD 194 (246)
T ss_dssp EETTSEEEE---EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-EEEEEEEEE--SSSSCEEEEEEEBTT
T ss_pred ECCCCeEEE---EecCcccccceEECCcchheeecccccceeEEEeccccccc-eeeeeeEEEc-CCCCcCCCcceEcCC
Confidence 544432211 12223446899999999865 56677788888877543210 0011111111 111133667899999
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q 023500 155 GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~ 173 (281)
|.+.++....+.|.+++.+
T Consensus 195 G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp S-EEEEEETTTEEEEEETT
T ss_pred CCEEEEEcCCCEEEEECCC
Confidence 9888877788899999876
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00024 Score=58.38 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=108.5
Q ss_pred CccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-C--CEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-G--TLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~--~~l~s~~~d~~v~~w~~~ 77 (281)
|...|..++.+-+|.+++|++. |+.++++|...-+......+.--.+.+.++ .+|. . ..-++.-.++.+.++|-.
T Consensus 52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCc
Confidence 3455677888889999999887 999999987654322111111122332222 2232 1 223344567888888854
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC----CC-CCceee-eeeeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT----DS-DNWHCV-QTISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~----~~-~~~~~~-~~~~~~~~~h~~~v~~~~~ 151 (281)
.... +....-.-|..+|.++.++|.++..++....|.|..|..+.. +. ..+... .+..-..........++.|
T Consensus 131 ~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 131 GDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred CCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 3321 112233458899999999999999999999999999976531 00 001000 0000000112345678999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
+|++..+.+-..|..|+++..+.++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccCcccccCcccEEEEEEeccch
Confidence 9999999999999999999877554
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=38.54 Aligned_cols=37 Identities=38% Similarity=0.532 Sum_probs=32.0
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
+...+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455667888899999999999999999999999983
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0038 Score=50.91 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=62.9
Q ss_pred eecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEE
Q 023500 42 TLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVW 119 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w 119 (281)
.+-+|...|..++|+|..+ ++..++.++.|++.|+.... +...+..+ ..+.+++|.-+.. +|.+|-..|.|.++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce---eeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3446778899999999765 78899999999999996543 23444555 5689999988754 68888899999999
Q ss_pred eCCCCC
Q 023500 120 WAEDTD 125 (281)
Q Consensus 120 ~~~~~~ 125 (281)
|+....
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 987653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.03 Score=47.21 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=106.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
+..++.++.++.+..+|..+++......+. +.+.+.... .+..++.++.++.+..+|..+++..... ......
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~ 177 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS---SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPA 177 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC---ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCc
Confidence 455566677777777777666532222211 222111111 3456677778899999998776532211 111110
Q ss_pred e-----eEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc--ccEEEEEEcc--CCCEEEEeeCCC
Q 023500 95 V-----KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS--STIWALSFNA--KGDKLVSCSDDL 165 (281)
Q Consensus 95 v-----~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~ 165 (281)
. .+... .+..++.++.++.+..++.++... .|+. ..... .+.. ..+..+.-+| .+..++.++.+|
T Consensus 178 ~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~-~W~~--~~~~~-~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g 251 (377)
T TIGR03300 178 LTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP-LWEQ--RVALP-KGRTELERLVDVDGDPVVDGGQVYAVSYQG 251 (377)
T ss_pred eeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeee--ccccC-CCCCchhhhhccCCccEEECCEEEEEEcCC
Confidence 0 00011 124667778888888888765431 1211 01000 0000 0000000011 245777888899
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
.+..+|.+.++.. |+.. .. ....+ .. .++.+..+..++.+..++...+.. +......
T Consensus 252 ~l~a~d~~tG~~~-------W~~~--~~-~~~~p----~~-~~~~vyv~~~~G~l~~~d~~tG~~--------~W~~~~~ 308 (377)
T TIGR03300 252 RVAALDLRSGRVL-------WKRD--AS-SYQGP----AV-DDNRLYVTDADGVVVALDRRSGSE--------LWKNDEL 308 (377)
T ss_pred EEEEEECCCCcEE-------Eeec--cC-CccCc----eE-eCCEEEEECCCCeEEEEECCCCcE--------EEccccc
Confidence 9999987654321 1111 00 00011 11 245666667888888886643321 1111000
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
........... +. .+..++.||.|.++|...
T Consensus 309 ~~~~~ssp~i~--g~-~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 309 KYRQLTAPAVV--GG-YLVVGDFEGYLHWLSRED 339 (377)
T ss_pred cCCccccCEEE--CC-EEEEEeCCCEEEEEECCC
Confidence 00111111121 33 355778899999988653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.027 Score=46.54 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEEecCCCeeEEeEeecC-C--
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVMPGNEFECVSVLQG-H-- 91 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~~~-~-- 91 (281)
+.+.+.|..+.+. +.++..-..+- .+ ++|||+.|+.+. .+..|.+||....+....+..-.. +
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7899999877653 34443222222 24 899999876654 478999999976654322211000 1
Q ss_pred -ccceeEEEecCCCCeEEEEec--CCeEEEEeCCCC
Q 023500 92 -AQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDT 124 (281)
Q Consensus 92 -~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~ 124 (281)
...-....++|++++++.... +..|-+.|++..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 222347789999998887663 579999988764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=65.61 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=103.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-C-cEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-K-SVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~-~v~~w~~~~~ 79 (281)
|+..-+|++|+-+.++|+.|+-.|.|++|+..++.. ....++|..+|+-+.-+-+|..+++.+.- . -..+|++...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 445678999999999999999999999999988754 45678999999999888888876665442 2 4568987542
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. .....+ ..-.+++|+-..+.-+.|.......+||++... ...++.....+....-++..|+|+.++++
T Consensus 1178 ~--~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1178 G--GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred c--Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEe
Confidence 1 222222 345678888775554555555677889887642 12221111112222336788999887664
Q ss_pred EeeCCCcEEEEeCCc
Q 023500 160 SCSDDLTIKIWGADI 174 (281)
Q Consensus 160 s~~~d~~i~~w~~~~ 174 (281)
+||. +||.+.
T Consensus 1247 ---ndGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1247 ---NDGV--LWDVRI 1256 (1516)
T ss_pred ---eCce--eeeecc
Confidence 5663 688753
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=57.74 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
...|.--+++..+.+++-|+.-|.+.+++=.. +... .....+....+.....|++..+.|+|+..|.|.++.+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-GEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCc-hhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455455667789999999999999887422 2211 112222344456678899988999999999999886655321
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
..-.. +......|...|++++|++++..+++|...|.|..-.++.
T Consensus 111 ~~~~~---~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDY---VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Cccee---eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11111 1112234788999999999999999999999988765543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0051 Score=55.35 Aligned_cols=182 Identities=16% Similarity=0.248 Sum_probs=102.6
Q ss_pred CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 60 ~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
..++-||--..+...|+....+... ..+. .+.|.- ...++..+++|...|+|.+-|..+- +.+.++
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~-~~v~--a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~-----~~iht~---- 213 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT-TNVS--ASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSF-----ETIHTF---- 213 (1118)
T ss_pred cceeecchhhheeeeecccceeeee-eecc--CCceEE--EEecCcEEEeecccceEEeecCCcC-----ceeeee----
Confidence 4455565555666677765443211 1111 112322 2345678999999999999865432 233333
Q ss_pred CCccccEEEEEEccCCCEEEEeeC---------CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--C
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSD---------DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E 208 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~---------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 208 (281)
.+|.+.+. +|+-.|..|++|+. |..|++||+++-+......+ +..+ .-+.+.| .
T Consensus 214 ~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------------~~~P-~flrf~Psl~ 278 (1118)
T KOG1275|consen 214 DAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------------PYGP-QFLRFHPSLT 278 (1118)
T ss_pred ecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc------------ccCc-hhhhhccccc
Confidence 47888885 55567789999984 56778888764321111110 1111 1122233 3
Q ss_pred ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 209 GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 209 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
..++.++.-|..++.+...- ..+.....+. ......+.+..+++.+. .++-+..+|.|.+|.
T Consensus 279 t~~~V~S~sGq~q~vd~~~l---sNP~~~~~~v--~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATL---SNPPAGVKMV--NPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEEecccceeecccccc---CCCccceeEE--ccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence 35666666677777653211 1121112221 22344588899999764 688899999999997
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00033 Score=62.20 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=75.2
Q ss_pred EEEcCCCCEEEEecC----CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC
Q 023500 53 VSWNASGTLLATCGR----DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN 128 (281)
Q Consensus 53 v~~~~~~~~l~s~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~ 128 (281)
.+|+|...+++.++- .|+|.++-=. +.+ + ..+. ..-.+++++|||..-+|+.|.+-|.+.+|......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadt-GEP-q-r~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--- 92 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADT-GEP-Q-RDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--- 92 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecC-CCC-C-cccc--cceehhhhccChHHHHHhhccccceeEEEecCCce---
Confidence 467887777766542 4677776322 211 1 1111 11125679999999899999999999999655432
Q ss_pred ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 129 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
..+ ....|+.++..++||++|..|+++.+-|.+.+|..+
T Consensus 93 ---~ht---v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 ---THT---VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---eee---eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 112 234689999999999999999999999999999654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.066 Score=47.79 Aligned_cols=151 Identities=17% Similarity=0.346 Sum_probs=96.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC------------CEEEEecCCCcEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG------------TLLATCGRDKSVW 72 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~------------~~l~s~~~d~~v~ 72 (281)
.-.++.|+|.| ++|-|+. ..|.+-|..+- +.+..++-|...|+.+.|.|-. .+|+++.-.|.|.
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 34567888876 4555552 35666665543 3467788899999999997631 2567777889999
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCC---C-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPT---M-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~---~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+||..... .+.-+..|.+.+..++|-|. . ..+++-..-.++.+|+..++. .-| +...+ .....|
T Consensus 93 l~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~W-------k~~ys-~~iLs~ 160 (1062)
T KOG1912|consen 93 LVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFW-------KYDYS-HEILSC 160 (1062)
T ss_pred EEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc-eee-------ccccC-Ccceee
Confidence 99986443 23345667777888887663 3 466776777899999665542 111 11112 244566
Q ss_pred EEEcc-CCCEEEEeeCCCcEEEEe
Q 023500 149 LSFNA-KGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 149 ~~~~~-~~~~l~s~~~d~~i~~w~ 171 (281)
+.+.| |.+.+..-+..|.+-+-+
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEe
Confidence 77777 445665556666665554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.02 Score=50.89 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=76.4
Q ss_pred CccceeEEEEcCCC------------CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC---CC-CEEEEe
Q 023500 2 HTRTVRSCAWSPSG------------KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA---SG-TLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~------------~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~-~~l~s~ 65 (281)
|+..|+.+.|.|-. -+||++.-.|.|.|||...... +..++.|.+++..+.|-| +. ..|+.-
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~--~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV--INWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh--hhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 67889999998842 2567777779999999866543 345677889999999865 34 356655
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeC
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~ 121 (281)
..-..+-+|+...++... ..........|..+.|-. ..+..-+..|.+.+.+.
T Consensus 132 h~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 666789999987776432 222223345678888843 34444445566655543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00025 Score=63.21 Aligned_cols=125 Identities=13% Similarity=0.149 Sum_probs=85.7
Q ss_pred ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-
Q 023500 36 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN- 114 (281)
Q Consensus 36 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~- 114 (281)
.+....++..|+...+|++|+-+.++|+.|+..|.|+++++.++.. .....+|.+.|+-+.=+-++...++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccC
Confidence 3445677888999999999999999999999999999999987753 345688999999888777888665544333
Q ss_pred -eEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccc
Q 023500 115 -TIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176 (281)
Q Consensus 115 -~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~ 176 (281)
-..+|+..+... ..|. ..-.++.|+.....-+.|..-....+||+.+..
T Consensus 1167 PlsaLW~~~s~~~-------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1167 PLSALWDASSTGG-------------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred chHHHhccccccC-------------ccccccccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 457887654310 0121 224567887653322222222357789987543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.058 Score=42.38 Aligned_cols=167 Identities=11% Similarity=0.160 Sum_probs=92.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-e
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-E 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~ 81 (281)
+.+..++|+|+.+ ++|.....+.|.-++.. ++......+.+ .+....|++..++.++++.-.++.+.+.++.... .
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 4588999999755 67777777777666654 44333334454 3456788888888777777678899999884321 1
Q ss_pred --eEEeE--e---ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeee---eeeeccCCccccEEEEEE
Q 023500 82 --FECVS--V---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ---TISESNNGHSSTIWALSF 151 (281)
Q Consensus 82 --~~~~~--~---~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~ 151 (281)
..... . ...+...+..++|.|..+.|+.+-+..-.+++.+..........+. .+.. .......+.++.+
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-DKLFVRDLSGLSY 178 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS---EEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc-ccceeccccceEE
Confidence 11111 1 1124556899999999888888888877777765431100000000 0000 1122345788999
Q ss_pred ccCC-CEEEEeeCCCcEEEEeCC
Q 023500 152 NAKG-DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~-~~l~s~~~d~~i~~w~~~ 173 (281)
+|.. .+++....+..+..+|.+
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT
T ss_pred cCCCCeEEEEECCCCeEEEECCC
Confidence 9864 456666677788888754
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.09 Score=44.30 Aligned_cols=220 Identities=10% Similarity=0.087 Sum_probs=108.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEE--EcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecC
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS--WNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~--~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~ 90 (281)
+..++.++.++.+..||..+++... .+......+ .+. -+| .+..++.+..++.+..+|..+++.......-..
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W--~~~~~~~~~-~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLW--TYSRVTPAL-TLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceee--EEccCCCce-eecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 3455567778999999987765422 222111111 000 011 134677788889999999877653221110000
Q ss_pred Cc-cc---eeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 91 HA-QD---VKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 91 ~~-~~---v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
.. .. ...+.-+| .+..++.++.++.+..++.++.. ..|.. . ..... ... ..+..++.++.|
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-~~W~~----~--~~~~~----~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-VLWKR----D--ASSYQ----GPA--VDDNRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-EEEee----c--cCCcc----Cce--EeCCEEEEECCC
Confidence 00 00 00000112 24577888889999999886542 11211 0 00111 111 245678888889
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
|.+..+|...++..... . .... ....++. .++.++.++.++.+.+++...+.. ....
T Consensus 289 G~l~~~d~~tG~~~W~~-------~-~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~~---------~~~~ 346 (377)
T TIGR03300 289 GVVVALDRRSGSELWKN-------D-ELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGSF---------VARL 346 (377)
T ss_pred CeEEEEECCCCcEEEcc-------c-cccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCCCE---------EEEE
Confidence 99999987654332111 0 0000 0011111 245777788899998886543211 1122
Q ss_pred cCCCCCeeE-EEEcCCCCeeEEEeCCCCeEEEE
Q 023500 244 KAHDMDVNS-VQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 244 ~~h~~~v~~-~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
..+...+.. -.+ .++ .+ ..++.||.|..|
T Consensus 347 ~~~~~~~~~sp~~-~~~-~l-~v~~~dG~l~~~ 376 (377)
T TIGR03300 347 KTDGSGIASPPVV-VGD-GL-LVQTRDGDLYAF 376 (377)
T ss_pred EcCCCccccCCEE-ECC-EE-EEEeCCceEEEe
Confidence 223322222 122 223 44 467779988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.074 Score=42.72 Aligned_cols=186 Identities=15% Similarity=0.237 Sum_probs=102.1
Q ss_pred EEcCCCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-------CCcEEE----
Q 023500 10 AWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-------DKSVWI---- 73 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-------d~~v~~---- 73 (281)
.|+|||++|.+.-+| |.|-+||.. ..+..+..+..|.-.=..+.+.|||..|+.+-. .+..++
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 699999998876544 679999987 344556677666544467788999966655421 123332
Q ss_pred -------EEecCCCeeEEeEee--cCCccceeEEEecCCCCeEEEEecCCe-------EEEEeCCCCCCCCceeeeeeee
Q 023500 74 -------WEVMPGNEFECVSVL--QGHAQDVKMVQWHPTMDVLFSCSYDNT-------IKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 74 -------w~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~d~~-------v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
-|..++...+. ..+ .-|.-.|+-+++.+++..++..-+.+. +-++.-... ...+..
T Consensus 136 M~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-------~~~~~~ 207 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-------LRLLPA 207 (305)
T ss_pred cCCceEEEecCCCceeee-eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-------ceeccC
Confidence 12222221111 112 224555777777777776666554442 222211110 000100
Q ss_pred c---cCCccccEEEEEEccCCCEE-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeee
Q 023500 138 S---NNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS 213 (281)
Q Consensus 138 ~---~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (281)
. ...-...+=++++++++..+ +|+=+-+.+.+||...+...... .-..++.+...+++++++
T Consensus 208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--------------~l~D~cGva~~~~~f~~s 273 (305)
T PF07433_consen 208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--------------PLPDACGVAPTDDGFLVS 273 (305)
T ss_pred ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--------------ccCceeeeeecCCceEEe
Confidence 0 01123567799999998766 55557789999987755432111 112344555566676666
Q ss_pred cCCCC
Q 023500 214 GAADD 218 (281)
Q Consensus 214 ~~~d~ 218 (281)
.+...
T Consensus 274 sG~G~ 278 (305)
T PF07433_consen 274 SGQGQ 278 (305)
T ss_pred CCCcc
Confidence 55543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.032 Score=37.44 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=59.4
Q ss_pred eeEEEEcC---CC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 6 VRSCAWSP---SG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 6 i~~~~~~~---~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|+++++.. +| +.|+.|+.|..|++|+-. +.+..+..+ +.|.++.-.+. .+++-+-.+|+|-+++-.. +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-R- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc-e-
Confidence 55565444 44 368899999999999632 345666644 44555554433 6688888888888886421 1
Q ss_pred eEEeEeecCCccceeEEEe-cCCC--C-eEEEEecCCeEE
Q 023500 82 FECVSVLQGHAQDVKMVQW-HPTM--D-VLFSCSYDNTIK 117 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~-~p~~--~-~l~s~s~d~~v~ 117 (281)
+-..+... .++++.+ ..++ . -|++|..+|.|-
T Consensus 74 ---lWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ---LWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11122222 2444443 3332 2 588888888774
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.092 Score=41.59 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=86.3
Q ss_pred ceeEEEEcCCCCEEEEee--CC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe-cCCC
Q 023500 5 TVRSCAWSPSGKLLATAS--FD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~--~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~-~~~~ 80 (281)
.+...+++++|+.+|... .+ ..+.++..... ... .+.+ ..+..-+|++++...+....+...+++.. ..+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~--~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRP--VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-cee--eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 577889999999776554 33 34444433222 111 1122 36677789999877766666666676642 2222
Q ss_pred eeEEeEee-cCCccceeEEEecCCCCeEEEEe---cCCeEEEEeCCCCCCC-CceeeeeeeeccCCccccEEEEEEccCC
Q 023500 81 EFECVSVL-QGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 81 ~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s---~d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
. .....- ..-...|..++++|++..++... .++.|.+=-+...... ........ .........+..+.|.+++
T Consensus 100 ~-~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~-~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 G-EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR-RVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred c-eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce-EecccccCcceeeeecCCC
Confidence 1 111111 11111799999999999765544 3567776655543332 11111111 1111223568899999998
Q ss_pred CEEEEeeCCC
Q 023500 156 DKLVSCSDDL 165 (281)
Q Consensus 156 ~~l~s~~~d~ 165 (281)
.+++.+...+
T Consensus 178 ~L~V~~~~~~ 187 (253)
T PF10647_consen 178 TLVVLGRSAG 187 (253)
T ss_pred EEEEEeCCCC
Confidence 8766665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.04 Score=37.01 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=59.4
Q ss_pred eeEEEEc---CCC-CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCC
Q 023500 50 VKSVSWN---ASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 50 v~~v~~~---~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~ 125 (281)
|+++++. .+| +.|+.||+|..||+|+-. +.+..+.. .+.|+++.-.+. ..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc---
Confidence 4455543 344 469999999999999732 22333333 345666665555 568888899999998432
Q ss_pred CCCceeeeeeeeccCCccccEEEEEEcc---CC-CEEEEeeCCCcEE
Q 023500 126 SDNWHCVQTISESNNGHSSTIWALSFNA---KG-DKLVSCSDDLTIK 168 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~~~d~~i~ 168 (281)
.+-|+. ... ..+.++.+.. +| ..|++|-.+|.|-
T Consensus 72 ~RlWRi-------KSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRI-------KSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeee-------ccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122221 111 2245555432 33 2688888888763
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=57.01 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
.+..++.|+..|.+-+.|..++ ..+...=+.-.++|++++|+.+|.+++.|-.+|.|.+||+...+... .+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~---~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK---VITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee---eeeecCC
Confidence 4556778887888888776553 11111112234799999999999999999999999999998765433 3333333
Q ss_pred ---ceeEEEecCCCCeEEEEecCCe
Q 023500 94 ---DVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 94 ---~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
.+-.+.+..++..++++...|+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 3334444455557777666665
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0049 Score=53.14 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=62.4
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcccee-EEEecCCCCeEEEEecCCeEEEEeCCCCC
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~l~s~s~d~~v~~w~~~~~~ 125 (281)
-.+.-+.|+|.-..||.+-.+|.|.+..+. ++.+.++..|..+++ +++|.|+|+.++.|=.||+|++.|++...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 457788999998999999999999988875 344566666777777 99999999999999999999999998764
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=35.28 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=27.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV 33 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~ 33 (281)
..|.+++|+|..+++|.|..||.|.+|..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 468999999999999999999999999763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.14 Score=42.12 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=70.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.++|++++-- .+.++++. .+.|.+|+....+ ......+. .++..++....+++|+.|..-+.+.++.......
T Consensus 88 ~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~---~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 88 KGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD---SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp SS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE
T ss_pred cCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheec---ceEEEEEEeccccEEEEEEcccCEEEEEEEccCC
Confidence 4667777655 44444333 4789999987766 54444433 2223444444567999999889999887654332
Q ss_pred -eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 82 -FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 82 -~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
...+.. ......++++.+-++++.++.+..+|.+.++...
T Consensus 162 ~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 222222 1224457888888676789999999999988765
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.17 Score=42.35 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCC----------------CCCeeEEEEcCCCCEEEEecC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH----------------ENEVKSVSWNASGTLLATCGR 67 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h----------------~~~v~~v~~~~~~~~l~s~~~ 67 (281)
..+....|+|+|+.+|-.. +++|.+++..++....+. ..|- -+.-..+-|||||++|+....
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3567789999999998765 678999876555332222 2220 012246789999999887643
Q ss_pred -CCcEEEEEe
Q 023500 68 -DKSVWIWEV 76 (281)
Q Consensus 68 -d~~v~~w~~ 76 (281)
+..|+.+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 344444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.2 Score=43.09 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE-ecCCCeeEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE-VMPGNEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~-~~~~~~~~~ 84 (281)
...+.++|+|++++. +.||.-.||....... .. .+.-....|.++++ +|+-....+|.++. +....
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~---- 101 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--KA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV---- 101 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--EE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T----
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--cc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc----
Confidence 568899999999887 5588888886433221 11 23445688988555 55555578899874 32111
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
...+.-. ..+..+ .+ |.+|+..+. +.|.+||.++.. .+.++. -..|..+-|++++++++..+.+
T Consensus 102 ~k~i~~~-~~~~~I--f~-G~LL~~~~~-~~i~~yDw~~~~-----~i~~i~------v~~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 102 VKSIKLP-FSVEKI--FG-GNLLGVKSS-DFICFYDWETGK-----LIRRID------VSAVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp T-----S-S-EEEE--E--SSSEEEEET-TEEEEE-TTT-------EEEEES------S-E-EEEEE-TTSSEEEEE-S-
T ss_pred ceEEcCC-cccceE--Ec-CcEEEEECC-CCEEEEEhhHcc-----eeeEEe------cCCCcEEEEECCCCEEEEEeCC
Confidence 0111111 012221 22 666666554 489999887653 344443 1237899999999999888866
Q ss_pred CcEEEEeCCcccc--ccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 165 LTIKIWGADITRM--QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 165 ~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.+.+++.+.... ...++... ..+... -....|.+..|..+-++.+... .+..+ +..+ . .. +.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~--~f~~~~-E~~~~IkSg~W~~d~fiYtT~~--~lkYl-~~Ge------~-~~-i~- 229 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVED--AFELIH-EISERIKSGCWVEDCFIYTTSN--HLKYL-VNGE------T-GI-IA- 229 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GG--GEEEEE-EE-S--SEEEEETTEEEEE-TT--EEEEE-ETTE------E-EE-EE-
T ss_pred -eEEEEEecchhcccccccCchh--ceEEEE-EecceeEEEEEEcCEEEEEcCC--eEEEE-EcCC------c-ce-EE-
Confidence 577776543211 11112211 111111 1146778888887744444333 55553 2211 0 01 11
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.-+.++.=+...|.... +...-.|+.+..+.+.
T Consensus 230 --~ld~~~yllgy~~~~~~-ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 --HLDKPLYLLGYLPKENR-LYLIDRDGNVISYELD 262 (443)
T ss_dssp --E-SS--EEEEEETTTTE-EEEE-TT--EEEEE--
T ss_pred --EcCCceEEEEEEccCCE-EEEEECCCCEEEEEEC
Confidence 11345555666665444 4456677777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=41.97 Aligned_cols=102 Identities=19% Similarity=0.404 Sum_probs=60.3
Q ss_pred cCCCCEEEEee---------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 12 SPSGKLLATAS---------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 12 ~~~~~~l~tg~---------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
|||+++++... ..+.+.|||..++....+.. ....+....|+|+|+.++-... +.|.++++..+.+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEec-CceEEEECCCCCeE
Confidence 68888776632 23567888888775443332 2567889999999999887764 78888876544221
Q ss_pred EEeEeecC-------C---------ccceeEEEecCCCCeEEEEecC-CeEEEE
Q 023500 83 ECVSVLQG-------H---------AQDVKMVQWHPTMDVLFSCSYD-NTIKVW 119 (281)
Q Consensus 83 ~~~~~~~~-------~---------~~~v~~v~~~p~~~~l~s~s~d-~~v~~w 119 (281)
.+. ..+ - -..-..+-|+|+++.|+....| ..|+.+
T Consensus 77 -~lT-~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 77 -QLT-TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp -ESE-S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred -Eec-cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 111 111 0 0122467799999987765544 445444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.12 Score=46.15 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=82.8
Q ss_pred ceeEEEEcCCCCEEEEee------CCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc-EEEEEe
Q 023500 5 TVRSCAWSPSGKLLATAS------FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-VWIWEV 76 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~------~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-v~~w~~ 76 (281)
.+...+++|+|+.+|..- .|..-.||-.. ++....+ ..+. ....-.|+|+|..|.+.+.... +++.+-
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 567889999999776554 34444555321 2222222 2232 3677899999988777654322 222221
Q ss_pred cCCCeeEEeEe----ec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 77 MPGNEFECVSV----LQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 77 ~~~~~~~~~~~----~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
....+...+.. .. .....|..+.|+|++..++... ++.|.+=-+........ .+........+-...+..++|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~-~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY-ALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce-eecccEEeecccCCccccceE
Confidence 11111100000 00 1234699999999999877655 47776633333222221 111111111112233577899
Q ss_pred ccCCCEEEEeeCCCcEEEEeC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+++.+ +.+..++.-.+|-+
T Consensus 505 ~~~~~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGDSL-VVGRSDPEHPVWYV 524 (591)
T ss_pred ecCCEE-EEEecCCCCceEEE
Confidence 998874 45555555556644
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.16 Score=39.51 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 24 DATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
++.|..||..+++......+.. ....+ +. ..+++..+++++.++.+..||...++...... +.+. +.... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~~---~~~~~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPGP---ISGAP-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSSC---GGSGE-EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee-cccc---cccee-ee
Confidence 5778888887765433333321 12222 11 23466777777899999999987775432222 2211 11111 12
Q ss_pred CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccc
Q 023500 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 103 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~ 177 (281)
.+..++.++.++.+..++..+... .|+....... ... ..........+..++.+..++.+..+|.+.++.
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKV-LWSIYLTSSP---PAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCE-EEEEEE-SSC---TCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred cccccccccceeeeEecccCCcce-eeeecccccc---ccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 345666666888898888665431 2221111100 011 111122222367788888899999999876554
|
... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0055 Score=34.29 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=27.1
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
...|.+++|+|..+++|.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 346899999999999999999999999965
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.27 Score=43.98 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CCCCeeEEEEcCCCCEEEEec------CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe-EEE
Q 023500 46 HENEVKSVSWNASGTLLATCG------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKV 118 (281)
Q Consensus 46 h~~~v~~v~~~~~~~~l~s~~------~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~-v~~ 118 (281)
....+...+++|+|+.++..- .|..-.+|-...+..... .+.+. ....-.|+|++..+++.+.... +++
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 334677889999999876544 345445565433332222 22332 3788899999888877764423 233
Q ss_pred EeCCCCCCCCceeeeeee--eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 119 WWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
..-.... ..+ +..+. .........|..+.|||||..++... ++.|.+=-+. . ...+...+.....+....
T Consensus 424 ~~~~~~g-ql~--~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv--r--~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 424 IRDPATG-QLA--RTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE--Q--TEDGQYALTNPREVGPGL 495 (591)
T ss_pred eccCCCc-eEE--EEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE--e--CCCCceeecccEEeeccc
Confidence 2111100 000 00000 00001235699999999999877655 4655542111 0 011111111111111112
Q ss_pred CcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 197 DRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
...+.++.|..++.++.+..+....+|.+.
T Consensus 496 ~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 496 GDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CCccccceEecCCEEEEEecCCCCceEEEe
Confidence 334577889998877666665555566543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.081 Score=45.17 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=79.7
Q ss_pred eeEEEEcCCCCEEEEee---CC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEE--EecC
Q 023500 6 VRSCAWSPSGKLLATAS---FD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIW--EVMP 78 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~---~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w--~~~~ 78 (281)
+..-+|+|+++.++-.. .. ..+.+++..+++.+.+..+.++.. .-+|+|||++|+ +...|+...+| |+..
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 44457889887654432 22 347788887776555555554443 468999998754 55667765555 4443
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEE-EecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
... ..+..-...-+.-.|+|+|..++- .+..|.-.||-....... ...+.... ..-..-.|+|+|++
T Consensus 272 ~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~----~~riT~~~----~~~~~p~~SpdG~~ 339 (425)
T COG0823 272 KNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ----VTRLTFSG----GGNSNPVWSPDGDK 339 (425)
T ss_pred Ccc----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc----eeEeeccC----CCCcCccCCCCCCE
Confidence 331 112222222236679999997654 444555555543322211 11121111 11125678899998
Q ss_pred EEEeeC
Q 023500 158 LVSCSD 163 (281)
Q Consensus 158 l~s~~~ 163 (281)
++..+.
T Consensus 340 i~~~~~ 345 (425)
T COG0823 340 IVFESS 345 (425)
T ss_pred EEEEec
Confidence 887764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.21 Score=45.69 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=85.3
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC-------CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
.....|.-.|+..++ .+..+..|... .-..+.|+ ....+.|-.++.+..||..-.. .+.+..-. .
T Consensus 501 ~~~~~ly~mDLe~GK---VV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~~~~-k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK---VVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVDSQS-K 572 (794)
T ss_pred CCCCceEEEecCCCc---EEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceeeccc-c
Confidence 345667667776654 34556555432 23345553 2345667778899999876433 11221111 1
Q ss_pred cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCC
Q 023500 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~ 218 (281)
.........|++-+.+| ++|.|+.+|.||+||. ++. +-...++ ....+|..+..+.+|..+.+.-+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~----------~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGK----------RAKTALP-GLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cch----------hhhhcCC-CCCCCeeEEEecCCCcEEEEeecc
Confidence 11223456777777776 8999999999999984 221 1111222 246899999999999877777777
Q ss_pred cEEEEec
Q 023500 219 SVQFFVE 225 (281)
Q Consensus 219 ~~~~~~~ 225 (281)
.+.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7777754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.36 Score=40.90 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=72.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-----------------------------------------ceeeeeee
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------------------------DYECVATL 43 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-----------------------------------------~~~~~~~~ 43 (281)
.|+.+.|+++..-||.|...|.+.||....+ .+.+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999853211 01122233
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecC------CccceeEEEecC-----C---CCeEEE
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG------HAQDVKMVQWHP-----T---MDVLFS 109 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~------~~~~v~~v~~~p-----~---~~~l~s 109 (281)
+...++|++++.| +=.+++.|.++|++.|.|++...- -....+.. ....++++.|.. + .-.++.
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPav-I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAV-IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEE-EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeE-EeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4456889999886 445889999999999999953321 11122222 244677787752 2 236888
Q ss_pred EecCCeEEEEeCC
Q 023500 110 CSYDNTIKVWWAE 122 (281)
Q Consensus 110 ~s~d~~v~~w~~~ 122 (281)
|...|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 8899999998764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.3 Score=39.65 Aligned_cols=155 Identities=12% Similarity=0.227 Sum_probs=76.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~ 82 (281)
..+..+..+++|++++.++..+...-||.-...+.+.. ..-...|..+.|+|++...+.+ ..+.|+.=+... ..++
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 35778888999999988776666677876544443322 2345789999999998875554 667777655211 1111
Q ss_pred EE-eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 EC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~-~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.. +..+......+..++|.++....++|+ .|++.+= .+ .-..|+...... .-+.....+.|.+..+-++.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S-~D--gGktW~~~~~~~----~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVS-TD--GGKTWQKDRVGE----NVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEE-SS--TTSS-EE-GGGT----TSSS---EEEEEETTEEEEE-
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEe-CC--CCccceECcccc----CCCCceEEEEEcCCCceEEE-
Confidence 11 111222334578889998876666554 5555442 11 122344332221 22455778888766555554
Q ss_pred eCCCcEEEE
Q 023500 162 SDDLTIKIW 170 (281)
Q Consensus 162 ~~d~~i~~w 170 (281)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 567766444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.046 Score=46.66 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=56.4
Q ss_pred EEEEcCCCCEEE-EeeCCCcEEEE--ecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe-cCCCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGKLLA-TASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~~l~-tg~~d~~i~lw--~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~~w~~~~~~~~~ 83 (281)
.-+|+|||+.|| +...|+...|| |..++... .+..-.+.-..=.|+|||+.|+-. +..|.-.+|-........
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 347999998655 55677766665 44444322 233222222244689999987644 455665666554332211
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEec
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
..+......-....|+|++..++..+.
T Consensus 319 --~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 319 --TRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred --eEeeccCCCCcCccCCCCCCEEEEEec
Confidence 112222222237789999998877664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=44.31 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCee-EEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc-
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA- 92 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~- 92 (281)
+.-++.|..+|.|.+|..+....-+-....+ ...|- .|.--.++.+..+++.|+.|+.|++++.+. ......|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCce---eeeeccccC
Confidence 3457789999999999765211000000001 11221 222222456788999999999999976643 22233444
Q ss_pred cceeEEEecCCCCeEEEE--ecCCeEEEEeCC
Q 023500 93 QDVKMVQWHPTMDVLFSC--SYDNTIKVWWAE 122 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~--s~d~~v~~w~~~ 122 (281)
..+........+..+.++ |.|..++.|+++
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 334444444445555555 666666666554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.2 Score=44.39 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=50.4
Q ss_pred CCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCCee-----E----Ee-EeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 48 NEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEF-----E----CV-SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~-----~----~~-~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
..-+.+.++|||++++. +..+.+|.|.|+...... + .. .+..+- .-.-.+|.++++.+.|---|..|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl--GPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL--GPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC--CcceEEECCCCCEEEeEeeccee
Confidence 45578899999998655 556999999998753320 0 01 111111 12345688888888888899999
Q ss_pred EEEeCCC
Q 023500 117 KVWWAED 123 (281)
Q Consensus 117 ~~w~~~~ 123 (281)
-.|+++.
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 9998865
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.32 Score=43.17 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.1
Q ss_pred eeEEEecCCCCeEE-EEecCCeEEEEeCCCCCC------CCceee-eeeeeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 95 VKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDS------DNWHCV-QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 95 v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~------~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
...+.++|++++++ ++..+++|.|.|++.... ....++ .++.. + ......+|.++|....|..-|+.
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev---G--lGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---G--LGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc---C--CCcceEEECCCCCEEEeEeecce
Confidence 46788999999865 455588999999876421 111111 11111 1 22345789999888888888999
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
|..|+++
T Consensus 398 v~kwn~~ 404 (635)
T PRK02888 398 IVKWNIE 404 (635)
T ss_pred eEEEehH
Confidence 9999875
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.68 Score=41.40 Aligned_cols=223 Identities=16% Similarity=0.222 Sum_probs=106.8
Q ss_pred CCCEEEEeeCCC------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-C-----cEEEEEecCCCe
Q 023500 14 SGKLLATASFDA------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-K-----SVWIWEVMPGNE 81 (281)
Q Consensus 14 ~~~~l~tg~~d~------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~-----~v~~w~~~~~~~ 81 (281)
.+.+++.||.++ .+..||+.++.+.....+.. ...-.+++.. ++...++||.| + ++..+|.....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 356778888774 57789988887766666552 3333444443 45677888888 3 55566654332
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCe-----EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-----IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~-----v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+.....+.......-.+ .-.+.+.+.|+.||. +-.||... ..|..+...... +...-... -++.
T Consensus 361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~---~~W~~va~m~~~----r~~~gv~~--~~g~ 429 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVT---NKWTPVAPMLTR----RSGHGVAV--LGGK 429 (571)
T ss_pred eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCC---CcccccCCCCcc----eeeeEEEE--ECCE
Confidence 32222222111111111 124567888888873 44554432 234333322211 11111111 2566
Q ss_pred EEEEeeCCCc------EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc-----EEEEec
Q 023500 157 KLVSCSDDLT------IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS-----VQFFVE 225 (281)
Q Consensus 157 ~l~s~~~d~~------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~-----~~~~~~ 225 (281)
..+.|+.++. +..||..... |+....+.. .+.-..+....+.+++.|+.|+. +..|++
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~---------W~~~~~M~~--~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNT---------WTLIAPMNT--RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCc---------eeecCCccc--ccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 7777776653 4456554332 332222211 11112233345567777877653 444544
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
..+ . ...+.........+-.+.+ +..+++.|+.||.
T Consensus 499 ~~~------~-W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 499 ETN------Q-WTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred CCC------c-eeEcccCccccccccEEEE---CCEEEEEecccCc
Confidence 321 1 1111111112222222333 3457888988875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.55 Score=40.14 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=76.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eee---eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YEC---VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+.|..+.|+.+.++ +.-..||.+++||..+.. +.. +....-....+....+..+|-.+++++ +.+ +-+.+.
T Consensus 81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~--~~~--~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN--NRF--YVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECCC--CeE--EEEeCc
Confidence 46778888875444 456789999999875432 000 111111112233334444565555543 333 333322
Q ss_pred CeeEEeEee---cC-------CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEE
Q 023500 80 NEFECVSVL---QG-------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 80 ~~~~~~~~~---~~-------~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
.+....+.+ .. +........+..+....+....++.+.+.+-... ..+ ...+++..+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i-----~~~~~i~~i 222 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--------KQI-----DSDGPIIKI 222 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--------ccc-----cCCCCeEEE
Confidence 211000000 00 0000000223334444444455555553221110 000 113578999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
+.||++++++.-..+|.+.+...+..
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECccc
Confidence 99999999999999999988876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.47 Score=39.05 Aligned_cols=146 Identities=6% Similarity=0.133 Sum_probs=86.7
Q ss_pred CCEEEEeeC----------CCcEEEEecCCC-----ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 15 GKLLATASF----------DATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 15 ~~~l~tg~~----------d~~i~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
.++++.|.. .|-|.+++.... +.+.++.. ...++|+++.-- .++++++.+ +.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~lv~~~g--~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGRLVVAVG--NKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTEEEEEET--TEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCEEEEeec--CEEEEEEccCc
Confidence 357776652 277889987663 44444443 357889888654 444333333 78999999876
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
........+..+. .+.++... +++++.|..-..+.++...... +.+..+.. ...+..+.++.|-++++.++
T Consensus 118 ~~l~~~~~~~~~~-~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~----~~l~~va~--d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 118 KTLLKKAFYDSPF-YITSLSVF--KNYILVGDAMKSVSLLRYDEEN----NKLILVAR--DYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SSEEEEEEE-BSS-SEEEEEEE--TTEEEEEESSSSEEEEEEETTT----E-EEEEEE--ESS-BEEEEEEEE-SSSEEE
T ss_pred ccchhhheecceE-EEEEEecc--ccEEEEEEcccCEEEEEEEccC----CEEEEEEe--cCCCccEEEEEEecCCcEEE
Confidence 6333333333322 45555444 5588888877888777443311 11222221 12345688888886667999
Q ss_pred EeeCCCcEEEEeCC
Q 023500 160 SCSDDLTIKIWGAD 173 (281)
Q Consensus 160 s~~~d~~i~~w~~~ 173 (281)
.++.+|.+.++...
T Consensus 189 ~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 189 VGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTSEEEEEEE-
T ss_pred EEcCCCeEEEEEEC
Confidence 99999999998654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.26 Score=42.33 Aligned_cols=138 Identities=19% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC--------CeeEEeE
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG--------NEFECVS 86 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~--------~~~~~~~ 86 (281)
|.+|+..+.+ .|.+||..+++. +..+.- .+|..|.|+++|.+++-.+.+ ++.+.+.... +......
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~--i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKL--IRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--E--EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred CcEEEEECCC-CEEEEEhhHcce--eeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceE
Confidence 7777766544 799999987753 555542 348999999999998888765 6677765322 0000112
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
.+..-...|.+..|..+ ..+++... .++.+ +. + ..-.+..+ ..++.-+.+.+....+....+|+.
T Consensus 191 ~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl-~~-G---e~~~i~~l-------d~~~yllgy~~~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED-CFIYTTSN--HLKYL-VN-G---ETGIIAHL-------DKPLYLLGYLPKENRLYLIDRDGN 255 (443)
T ss_dssp EEEEE-S--SEEEEETT-EEEEE-TT--EEEEE-ET-T---EEEEEEE--------SS--EEEEEETTTTEEEEE-TT--
T ss_pred EEEEecceeEEEEEEcC-EEEEEcCC--eEEEE-Ec-C---CcceEEEc-------CCceEEEEEEccCCEEEEEECCCC
Confidence 22222456888888877 44555332 77664 11 1 11112222 245667778887778888999998
Q ss_pred EEEEeCC
Q 023500 167 IKIWGAD 173 (281)
Q Consensus 167 i~~w~~~ 173 (281)
+..+.++
T Consensus 256 v~~~~ld 262 (443)
T PF04053_consen 256 VISYELD 262 (443)
T ss_dssp EEEEE--
T ss_pred EEEEEEC
Confidence 8888654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.49 Score=38.18 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=62.4
Q ss_pred EEEEcC-CCCEEEEeeCCC-cEEEEecCCCceeeeeeecCCCCCee--EEEEcCCCCEEEEe-----cCCCcEEEEEecC
Q 023500 8 SCAWSP-SGKLLATASFDA-TTCIWEDVGGDYECVATLEGHENEVK--SVSWNASGTLLATC-----GRDKSVWIWEVMP 78 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~-~i~lw~~~~~~~~~~~~~~~h~~~v~--~v~~~~~~~~l~s~-----~~d~~v~~w~~~~ 78 (281)
.++.+| .+..++.+---| -..+||..+++. ...+....+.-+ =..|+|||++|++. ...|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~- 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA- 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-
Confidence 467788 445566665555 356777766643 222222222111 14689999999875 345799999986
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 110 (281)
..+..+..+..|.-.-..+.+.|++..|+.+
T Consensus 86 -~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 86 -RGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred -CCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3345566677766556677899999776663
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.6 Score=39.29 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=56.4
Q ss_pred ceeEEEEcCCCCEEEEee-----------CCC-cEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 5 TVRSCAWSPSGKLLATAS-----------FDA-TTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~-----------~d~-~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
....++|.++|+++++-. ..+ .|.+++..+ +.......+-..-.....+++.++| ++++ ... .
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence 345789999999887642 223 676776532 2222223333223345788998988 5554 333 3
Q ss_pred EEEE-EecCCC----eeE-EeEeecC----CccceeEEEecCCCCeEEEEe
Q 023500 71 VWIW-EVMPGN----EFE-CVSVLQG----HAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 71 v~~w-~~~~~~----~~~-~~~~~~~----~~~~v~~v~~~p~~~~l~s~s 111 (281)
|..+ +..... +.+ .+..+.. +......+.|.|++.++++.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3333 332111 111 1122222 134477899999998777655
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.26 Score=43.93 Aligned_cols=106 Identities=15% Similarity=0.351 Sum_probs=69.3
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE--cCCCCEEEEecCCCcEEEEEecC------CCeeE
Q 023500 12 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWEVMP------GNEFE 83 (281)
Q Consensus 12 ~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~~~d~~v~~w~~~~------~~~~~ 83 (281)
+.-++..+.-+.-..+.|||...+..+--..+ ...+.|.+++| .|+|+.+++.|..+.|.++.-.. +..+.
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 33344333333334789999877765444455 35788999999 46899999999999999996532 11222
Q ss_pred EeEe--ecCCc-cceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 84 CVSV--LQGHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 84 ~~~~--~~~~~-~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
.++. +..|. .+|....|.++|.+++++ ++.+.|++
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 2222 23333 568899999998877763 56777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.45 Score=36.98 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=63.3
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCC-c
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH-A 92 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~-~ 92 (281)
++..+.+++.++.|..||..+++......+. +.+.... ...+..++.+..|+.+..+|...++........... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP---GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS---SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc---cccccee-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 5666667789999999998888654434432 2221111 224556666667789999998777654332111110 1
Q ss_pred cceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
...........++.++.+..++.+..++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 11122222233677888888999999987765
|
... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.6 Score=41.67 Aligned_cols=63 Identities=5% Similarity=0.038 Sum_probs=36.3
Q ss_pred CCCEEEEeeCC------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEecC
Q 023500 14 SGKLLATASFD------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMP 78 (281)
Q Consensus 14 ~~~~l~tg~~d------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~ 78 (281)
++.+++.||.+ ..+..||+.++.+..+..+.........+ .-+|...+.||.++ ++..||...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56777888854 23667887777665444433222222122 23667778888764 467787653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.51 Score=42.18 Aligned_cols=147 Identities=15% Similarity=0.251 Sum_probs=77.4
Q ss_pred CCCEEEEeeCC-C-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc-----EEEEEecCCCee
Q 023500 14 SGKLLATASFD-A-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-----VWIWEVMPGNEF 82 (281)
Q Consensus 14 ~~~~l~tg~~d-~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-----v~~w~~~~~~~~ 82 (281)
.+.++++||.| | ++..||+.++++..+..+.......-... -+|...+.||.||. +-.||... +++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~-~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVT-NKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCC-Ccc
Confidence 46788999999 3 46788888887766666554433332222 26778899999864 44455432 222
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCe------EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT------IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~------v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
..+..........-. -.-.+.++++|+.++. +..+|.. .+.|+.+........+|. ++. -++.
T Consensus 409 ~~va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~---t~~W~~~~~M~~~R~~~g-----~a~-~~~~ 477 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPE---TNTWTLIAPMNTRRSGFG-----VAV-LNGK 477 (571)
T ss_pred cccCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCC---CCceeecCCcccccccce-----EEE-ECCE
Confidence 222111111111111 1224567788886663 4555443 344655554443222222 221 2456
Q ss_pred EEEEeeCCCc-----EEEEeCCc
Q 023500 157 KLVSCSDDLT-----IKIWGADI 174 (281)
Q Consensus 157 ~l~s~~~d~~-----i~~w~~~~ 174 (281)
..+.|+.|+. +..||...
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEECCccCCCccceEEEEcCCC
Confidence 7777777762 55566543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.77 Score=36.60 Aligned_cols=169 Identities=14% Similarity=0.201 Sum_probs=98.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|..+.|+|+.+.|.+..+...-.++=...++..-...+.+..+ -..|.+..++.+.++-=.++.+.++.+.......
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 348899999998877666655555565444555433333444322 2456777777777777778888888776543211
Q ss_pred Ee-------EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeee-eeeeccCCccccEEEEEEccC-
Q 023500 84 CV-------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ-TISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 84 ~~-------~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~- 154 (281)
.. ............++|.|....++.+-+-.-+.|+.+....+.-..... .......-.-..|..+.|++.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~ 244 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT 244 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence 11 111222556789999999999999888888877766543211000000 000000001233667788764
Q ss_pred CCEEEEeeCCCcEEEEeCC
Q 023500 155 GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~ 173 (281)
+.+|+-+..++.+...|.+
T Consensus 245 ~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 245 NSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CcEEEEecCCceEEEEecC
Confidence 4566666667776666554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.07 Score=49.35 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=51.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE---EEEcCCCCEEEEecCCCcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS---VSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~---v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
+.+|++++|+.+|++++.|-.+|.|.+||...++. ++.+..|..+... +.+..++..++++..-|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 36899999999999999999999999999877653 4444444444333 344445567888877776 67764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.1 Score=38.01 Aligned_cols=180 Identities=10% Similarity=0.100 Sum_probs=83.3
Q ss_pred EEEEecCCCcEEEEEecCCCeeEEeEeecC---Cc-cceeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeee
Q 023500 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQG---HA-QDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 61 ~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~---~~-~~v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 134 (281)
.++.++.++.+...|..+++.......... +. .....+.-+| .+..++.++.++.+...|..+.. ..|+. .
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W~~--~ 283 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVWKR--E 283 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEEee--c
Confidence 455566677777777765543211110000 00 0001111123 24566777788988888776542 11211 1
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG 214 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (281)
+ +. ...+. ..+..++.++.+|.+..+|.+.++........ .......++. .++.+..+
T Consensus 284 ~-----~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-------~~~~~~sp~v-----~~g~l~v~ 341 (394)
T PRK11138 284 Y-----GS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-------LHRLLTAPVL-----YNGYLVVG 341 (394)
T ss_pred C-----CC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-------CCCcccCCEE-----ECCEEEEE
Confidence 1 10 00111 23456777788888888887654322111000 0000011111 25677778
Q ss_pred CCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE-EEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 215 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..++.+..++...+ .. +.. .......+.+ -.. . +.. |..++.||.|..+++
T Consensus 342 ~~~G~l~~ld~~tG-----~~---~~~-~~~~~~~~~s~P~~-~-~~~-l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 342 DSEGYLHWINREDG-----RF---VAQ-QKVDSSGFLSEPVV-A-DDK-LLIQARDGTVYAITR 393 (394)
T ss_pred eCCCEEEEEECCCC-----CE---EEE-EEcCCCcceeCCEE-E-CCE-EEEEeCCceEEEEeC
Confidence 88888888755432 11 111 1111112221 112 2 334 446788999887764
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.84 Score=39.97 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=65.0
Q ss_pred CCCeeEEEEcCCC----CEEEEecCCCcEEEEEecCCCee--EEe----EeecCCcc-ceeEEEecCCCCeEEEEecCCe
Q 023500 47 ENEVKSVSWNASG----TLLATCGRDKSVWIWEVMPGNEF--ECV----SVLQGHAQ-DVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 47 ~~~v~~v~~~~~~----~~l~s~~~d~~v~~w~~~~~~~~--~~~----~~~~~~~~-~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
=+.|..+.|.|-+ ..|++.-.-+.|.||-+...... +.. ..+...-+ --..+-|||....|+.-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3568899998852 35677777899999998743211 111 11111101 1135679999887654443333
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeC
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGA 172 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~ 172 (281)
--+..+.... .+....+ ...+.|.|.+|.+||..|+.+- ..-.-.+||-
T Consensus 136 SV~~sV~~d~---srVkaDi-----~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 136 SVLPSVHCDS---SRVKADI-----KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEeeeeeeCC---ceEEEec-----cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 2233332211 1111112 2347799999999998766543 3445567874
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.56 Score=41.88 Aligned_cols=147 Identities=9% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-------------------
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK------------------- 69 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~------------------- 69 (281)
+|++.+.||.++ ++..||+.++.+..+..+.........+. -+|...+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 678888898764 37789988877765544432222222222 2677777787653
Q ss_pred ----cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 70 ----SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 70 ----~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
++..||.... .+..+..+.........+ .-++.+++.|+.+ ..+..||.+. ...|..+..+...
T Consensus 429 ~~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~--~~~W~~~~~m~~~- 502 (557)
T PHA02713 429 HSSNKVIRYDTVNN-IWETLPNFWTGTIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNT--YNGWELITTTESR- 502 (557)
T ss_pred cccceEEEECCCCC-eEeecCCCCcccccCcEE--EECCEEEEEeCCCCCCccceeEEEecCCC--CCCeeEccccCcc-
Confidence 3555655432 232222221111111111 1234566666654 2356676553 1246555444321
Q ss_pred CCccccEEEEEEccCCCEEEEeeCCC--cEEEEeCC
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSDDL--TIKIWGAD 173 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~~w~~~ 173 (281)
+.....+.+ ++...+.|+.|+ .+..||..
T Consensus 503 ---r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 503 ---LSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ---cccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 122222222 567888888888 55556554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.5 Score=37.25 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=86.9
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC------CCCCeeEEEEcC-----CC---CEEEEecCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG------HENEVKSVSWNA-----SG---TLLATCGRD 68 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~-----~~---~~l~s~~~d 68 (281)
+++|++++.+ +=-++|.|..+|.+.|.|..+.....-..+.. ....++++.|.. |+ -.|+.|-..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999987 66789999999999999987665433333333 334678888852 22 367888888
Q ss_pred CcEEEEEecCC--Cee--EEeEeecCCccceeEEE-ecCC--------------------CCeEEEEecCCeEEEEeCCC
Q 023500 69 KSVWIWEVMPG--NEF--ECVSVLQGHAQDVKMVQ-WHPT--------------------MDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 69 ~~v~~w~~~~~--~~~--~~~~~~~~~~~~v~~v~-~~p~--------------------~~~l~s~s~d~~v~~w~~~~ 123 (281)
|++.+|.+... ..+ +.......+.+.+..+. ++.+ -+.++....+..+|++....
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99999998632 212 12222223445554443 3211 12344555688889985543
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEc-----cCCCEEEEeeCCCcEEEEeC
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFN-----AKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~d~~i~~w~~ 172 (281)
.. ...+.. .....+..+.+- ..+..|++-..+|.+++|.+
T Consensus 245 ~k-----~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 245 SK-----GAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -------EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred Cc-----ccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 22 111111 111223334442 24557888889999999976
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.4 Score=39.53 Aligned_cols=118 Identities=12% Similarity=0.266 Sum_probs=72.7
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEec--CCCCeEEEEecCCeEEEEeCCCC--
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH--PTMDVLFSCSYDNTIKVWWAEDT-- 124 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~d~~v~~w~~~~~-- 124 (281)
....+.-+.-++..+.-+...++.+||...+. .+....+ ...+.|..+.|. |+++.+++.+..+.|.++--.+-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33444444445555555556689999997554 3333334 345679999885 67889999999999999854211
Q ss_pred --CCCCceeeeeeeeccCCc-cccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 125 --DSDNWHCVQTISESNNGH-SSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 125 --~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
....|..++.+... .| +.+|....|.++|..++.++ ..+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~--~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDIS--SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEee--cCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 12234444444221 22 24678899999986555443 24777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.85 Score=36.13 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEe-cCCCceeeeee-ecCCCCCeeEEEEcCCCCEEEEec---CCCcEEEEEecCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPG 79 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~-~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~~w~~~~~ 79 (281)
.++.-.|++++.+.+....+...+++. ...+....+.. ..+-.+.|..+++||||.+++.-. .++.|.+=.+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 345557888888777666666666663 22222221111 111112899999999999865433 4577777766543
Q ss_pred Cee------EEeEeecCCccceeEEEecCCCCeEEEEecCC
Q 023500 80 NEF------ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 80 ~~~------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
... ............+..+.|.++..+++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 322 11122223345789999999988766555443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.3 Score=35.32 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=82.1
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE------
Q 023500 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS------ 86 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~------ 86 (281)
..++.|+.|.++| +.+++..... ...... +...|..+...|.-+.|+.-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4678889999888 7787762111 112221 234489999888766665554 3999999986433211000
Q ss_pred -----eecCCccceeEEE--ecCCCCeEEEEecCCeEEEEeCCCCCCCCc-eeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 87 -----VLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 87 -----~~~~~~~~v~~v~--~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
........+...+ -.+.+...+.+....+|.+|...... ..+ +...++. -+..+.+++|. ++.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-~~f~~~~ke~~-----lp~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-NSFSKLLKEIS-----LPDPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-ccccceeEEEE-----cCCCcEEEEEe--CCEE
Confidence 0011122233333 12334444455556688888765531 112 2233332 23667888888 4467
Q ss_pred EEeeCCCcEEEEeCCc
Q 023500 159 VSCSDDLTIKIWGADI 174 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~ 174 (281)
+.|..++ ..+.|+..
T Consensus 152 ~v~~~~~-f~~idl~~ 166 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLNT 166 (275)
T ss_pred EEEeCCc-eEEEecCC
Confidence 7777665 66677663
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.5 Score=40.47 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=79.6
Q ss_pred CCCcEEEEecCCCceeeeeeecCCCCC-eeEEEEcCC-------CCEEEEecCCCcEEEEEecCCCeeEEeEe-e--cCC
Q 023500 23 FDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNAS-------GTLLATCGRDKSVWIWEVMPGNEFECVSV-L--QGH 91 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~-------~~~l~s~~~d~~v~~w~~~~~~~~~~~~~-~--~~~ 91 (281)
..+.|.-.|+..++. +..++.|... |..+ .|+ ...-+.|=.++.+..||.+.... ..+.. . ...
T Consensus 502 ~~~~ly~mDLe~GKV--V~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 502 NPNKLYKMDLERGKV--VEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSS 576 (794)
T ss_pred CCCceEEEecCCCcE--EEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccccccc
Confidence 345666667777653 5566655543 5444 343 23456676778899999875432 11110 1 112
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
....+|++-..+ .+||.||.+|.||+|+-.. .+ ..+.. .+-..+|..|+.+.||++++.-+. -++-+++
T Consensus 577 ~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g-----~~-AKT~l---p~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 577 KNNFSCFATTED-GYIAVGSNKGDIRLYDRLG-----KR-AKTAL---PGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred CCCceEEEecCC-ceEEEEeCCCcEEeecccc-----hh-hhhcC---CCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 334556555544 3789999999999996221 11 11121 133478999999999997665543 3577777
Q ss_pred CC
Q 023500 172 AD 173 (281)
Q Consensus 172 ~~ 173 (281)
+.
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.1 Score=35.54 Aligned_cols=155 Identities=13% Similarity=0.172 Sum_probs=82.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEE-EEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTC-IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~-lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..+..+.+.|++.+++.|. .|.+. .++.....+..+. .+-...++++.+.|+++.++.+ ..|.+++=+...+..+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3577889999988877655 44432 2332223343322 2345688999999988876664 4566543222233333
Q ss_pred EEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...... ......+..+.+.|++.. +.++.+|.+..= .+ .-..|+.+... .+-+...+.+.|..+++.++ .
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~S-~d--~G~tW~~~~~~----~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLVS-KD--GGKTWEKDPVG----EEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEEe-CC--CCCCCeECCcC----CCCCcceEEEEEeCCCceEE-E
Confidence 321111 111234678888887664 455667766542 11 11234332111 11123566777776665555 4
Q ss_pred eCCCcEEEEe
Q 023500 162 SDDLTIKIWG 171 (281)
Q Consensus 162 ~~d~~i~~w~ 171 (281)
+..|.|--|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677776653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.7 Score=34.32 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=67.7
Q ss_pred eeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 41 ATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
+.+.+-...+..++|+|+.. +++.....+.|.-.+. .++.. ....+.+ ......|++..++.++++.-.++.+.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vl-r~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVL-RRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EE-EEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEE-EEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 34555566799999999755 5555666666655554 23322 1222333 3457888888777666665457888888
Q ss_pred eCCCCCC-CCceeeeeeeecc-CCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 120 WAEDTDS-DNWHCVQTISESN-NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 120 ~~~~~~~-~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
++..... ......+.+.... ..+...+-.++|++.+..|+.+-...-.++|.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 7743221 1111122222111 1244557789999987777766666566677554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.3 Score=36.60 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=58.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeeeee----cCCCCCeeEEEEcCC----CCEEEEecC------CC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATL----EGHENEVKSVSWNAS----GTLLATCGR------DK 69 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~~~------d~ 69 (281)
.-+.++|.|+|++|++ ...|.|.+++. .+.. ..+..+ .........++++|+ +.+.+.... +.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3468999999999876 55999999983 3332 223222 234467789999994 333333331 12
Q ss_pred --cEEEEEecCC-Cee---E-EeEeecC---CccceeEEEecCCCCeEEEEecCCe
Q 023500 70 --SVWIWEVMPG-NEF---E-CVSVLQG---HAQDVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 70 --~v~~w~~~~~-~~~---~-~~~~~~~---~~~~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
.|.-|..... ... + .+..+.. .......+.|.|++.++++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 3333444333 111 1 1111121 2334567999999987777665543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.7 Score=37.69 Aligned_cols=143 Identities=12% Similarity=0.066 Sum_probs=80.6
Q ss_pred EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-------eEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-------VLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-------~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
.+++.-..+.--|+..++ .+..+.-+.. |+-+.+.|+.. .-+.|=.|+.|.-||+.-.... .....+.
T Consensus 350 ~~~~~~~~l~klDIE~GK---IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~ 424 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGK---IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS 424 (644)
T ss_pred eCCCCcCcceeeecccce---eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec
Confidence 344444455555665553 3555665555 88888888743 1244556777777876532211 0000011
Q ss_pred eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
.+. .......|.+-..+| +++.|+.+|.||+||.-.. ...+.......+|..+..+.+|..+.+.
T Consensus 425 kqy--~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~------------~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 425 KQY--STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR------------RAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred ccc--ccccccceeeecCCc-eEEEeecCCcEEeehhhhh------------hhhhcccccCCceeeEEeeccCcEEEEe
Confidence 111 112234455554454 8999999999999986221 1111112346788888888888766666
Q ss_pred CCCcEEEEec
Q 023500 216 ADDSVQFFVE 225 (281)
Q Consensus 216 ~d~~~~~~~~ 225 (281)
-+..+.+.+.
T Consensus 490 c~tyLlLi~t 499 (644)
T KOG2395|consen 490 CKTYLLLIDT 499 (644)
T ss_pred cccEEEEEEE
Confidence 6777666643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.18 Score=27.47 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=25.4
Q ss_pred CeeEEEEcCCCC--eeEEEeCCCCeEEEEEccc
Q 023500 249 DVNSVQWSPGER--RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 249 ~v~~~~~~~~~~--~~~~s~~~Dg~v~iw~~~~ 279 (281)
.++++.|+|... .+|+-+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999998654 5788888889999999884
|
It contains a characteristic DLL sequence motif. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.7 Score=38.63 Aligned_cols=76 Identities=32% Similarity=0.514 Sum_probs=52.2
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCC-----------CeeEEeEe-------ecCCccceeEEEecCCC---Ce
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-----------NEFECVSV-------LQGHAQDVKMVQWHPTM---DV 106 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-----------~~~~~~~~-------~~~~~~~v~~v~~~p~~---~~ 106 (281)
-.|..|.+||+|++++-.|..+ |.|-.+... .+..|... ...+...|..+.|||.+ .+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4578889999999998888754 555555321 01122211 12345678899999974 67
Q ss_pred EEEEecCCeEEEEeCCCC
Q 023500 107 LFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~ 124 (281)
|+.-..|+++++|++...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999998643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.1 Score=35.51 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=32.8
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe----ecCCccceeEEEecCC
Q 023500 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV----LQGHAQDVKMVQWHPT 103 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~----~~~~~~~v~~v~~~p~ 103 (281)
+.++|.|+|+++++-- .|.|++.+ ..+.....+.. ..........++++|+
T Consensus 5 ~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred eEEEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 5799999998877654 89998888 33332122222 2234556789999995
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.26 Score=37.64 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=53.7
Q ss_pred CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
+.-++.|+.|+.|.+|.......... ....+-....+.+.--.++.+..++++|+.|+.|.+.-.. .+ -.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d-~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-----~~----g~ 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD-RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-----VL----GY 139 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH-hhhcccccceeccccccccceeEEeccCCceeeeccccCc-----ee----ee
Confidence 45688899999999998652221100 0011111111222222334578899999999999654321 00 01
Q ss_pred cCCcc-ccEEEEEEccCCCEEEEe--eCCCcEEEEeCC
Q 023500 139 NNGHS-STIWALSFNAKGDKLVSC--SDDLTIKIWGAD 173 (281)
Q Consensus 139 ~~~h~-~~v~~~~~~~~~~~l~s~--~~d~~i~~w~~~ 173 (281)
...|. .+...+..+..++.++.. +.|..++.|+++
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 12343 333333344444555555 556666666553
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.9 Score=34.32 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 252 SVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 252 ~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...|+|+++.+|.++...|.-.||=+.
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCccCCCCCEEEEECCCCCCccEEEEe
Confidence 478999999998888889987777554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.8 Score=33.48 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=105.4
Q ss_pred EcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe-eEEeEee
Q 023500 11 WSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVL 88 (281)
Q Consensus 11 ~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~ 88 (281)
|.++.. ++.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+.+|+++.. -+.+++...+.. .......
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~---~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK---RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce---EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 455544 333444445666666654432 1222 3344444444444555665543 345566643432 1111112
Q ss_pred cCC-ccceeEEEecCCCCeEEEEecC---------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 89 QGH-AQDVKMVQWHPTMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 89 ~~~-~~~v~~v~~~p~~~~l~s~s~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
.+. ...-+.+...|++.+.++.... ..-.+|.+.-.. . ..++ ...+-...+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g----~-~~~l---~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG----G-VVRL---LDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC----C-EEEe---ecCcEEecCceEECCCCCEE
Confidence 222 1334677788998877765540 111344333110 0 0111 11223445789999999877
Q ss_pred EEeeCC-CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCC-cEEEEecccCCCcCCcc
Q 023500 159 VSCSDD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADD-SVQFFVESKDDLIDGPS 235 (281)
Q Consensus 159 ~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~-~~~~~~~~~~~~~~~~~ 235 (281)
+..... +.|.-|+.+... +...-+.............-.++.+.+|.+- ++..++ .+..|+...
T Consensus 178 y~aDT~~~~i~r~~~d~~~-----g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG-------- 244 (307)
T COG3386 178 YVADTPANRIHRYDLDPAT-----GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG-------- 244 (307)
T ss_pred EEEeCCCCeEEEEecCccc-----CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC--------
Confidence 766543 566666554200 0000011111111122333344555565544 333333 677775431
Q ss_pred ceeeeeeccCCCCCeeEEEEcC-CCCeeEEEeCCC
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDD 269 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~s~~~D 269 (281)
.+..........+++++|-- +...|++|++..
T Consensus 245 --~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 --KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred --cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 11122222225577788763 335677776665
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.2 Score=42.04 Aligned_cols=147 Identities=11% Similarity=-0.044 Sum_probs=86.0
Q ss_pred eeEEEEcCCCCEEE--EeeCCCcEEEEecCCCc------eeeee---eecCCCCCeeEEEEcCC-CCEEEEecCCCcEEE
Q 023500 6 VRSCAWSPSGKLLA--TASFDATTCIWEDVGGD------YECVA---TLEGHENEVKSVSWNAS-GTLLATCGRDKSVWI 73 (281)
Q Consensus 6 i~~~~~~~~~~~l~--tg~~d~~i~lw~~~~~~------~~~~~---~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~ 73 (281)
|......+|++..+ ..+++-.|..||...-. ..+++ +......-..++.|+|. ....+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 44556667776543 33444467788864321 11111 11112234467889995 445677788999998
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
..+..... .... ..-....++++|+|.+..++.|-..|++.-|...-. ..+.+.... ..-...|.+++|-.
T Consensus 183 ~~~~~~~~--~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---ik~~ip~Pp---~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 183 KSTKQLAQ--NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---IKSEIPEPP---VEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhh--hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc---eeecccCCC---cCCCcceeEEEEec
Confidence 87643211 1111 123456799999999999999999999988854322 011111111 11146789999987
Q ss_pred CCCEEEEe
Q 023500 154 KGDKLVSC 161 (281)
Q Consensus 154 ~~~~l~s~ 161 (281)
...+++.-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 76665553
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.43 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.4
Q ss_pred CCeeEEEEcCC-C--CEEEEecCCCcEEEEEecC
Q 023500 48 NEVKSVSWNAS-G--TLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 48 ~~v~~v~~~~~-~--~~l~s~~~d~~v~~w~~~~ 78 (281)
+.|.+++|+|. + .+|+-+-.-+.|-++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999985 4 5888888888999999874
|
It contains a characteristic DLL sequence motif. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=4.9 Score=34.16 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=73.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA 92 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~ 92 (281)
+..+..++.++.+.-+|..+++......+. +.+.+ +| .+..++.+..++.+..+|..+++....... ..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA---GEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL---DV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC---Cceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecC---CC
Confidence 345556778888988998777643333322 22221 12 245566677788899899877764322211 00
Q ss_pred ccee-EEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEcc--CCCEEEEeeCCCc
Q 023500 93 QDVK-MVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNA--KGDKLVSCSDDLT 166 (281)
Q Consensus 93 ~~v~-~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~~~d~~ 166 (281)
.... ...-+| .+..++.++.++.+...+.++... .|+. .+......+. .....+.-+| .+..++.++.+|.
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~-~W~~--~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL-IWQQ--RISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh-hhee--ccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 0000 000012 123566677788888777655421 1211 0100000000 0000011112 2456777778888
Q ss_pred EEEEeCCccc
Q 023500 167 IKIWGADITR 176 (281)
Q Consensus 167 i~~w~~~~~~ 176 (281)
+.-+|.+.++
T Consensus 268 l~ald~~tG~ 277 (394)
T PRK11138 268 LVALDLRSGQ 277 (394)
T ss_pred EEEEECCCCC
Confidence 8888876543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.7 Score=31.10 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=24.3
Q ss_pred cceeEEEecCCC------CeEEEEecCCeEEEEeC
Q 023500 93 QDVKMVQWHPTM------DVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 93 ~~v~~v~~~p~~------~~l~s~s~d~~v~~w~~ 121 (281)
..+..++|+|.| ++|+..+.++.|.+|..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 478999999963 47899999999999944
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.46 E-value=3.6 Score=37.47 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=71.6
Q ss_pred eeEEEEcC--CCCEEEEeeCCCcEEEEecCC-------C----c-------eeeeeeecCCCCCeeEEEEc--CCCCEEE
Q 023500 6 VRSCAWSP--SGKLLATASFDATTCIWEDVG-------G----D-------YECVATLEGHENEVKSVSWN--ASGTLLA 63 (281)
Q Consensus 6 i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~-------~----~-------~~~~~~~~~h~~~v~~v~~~--~~~~~l~ 63 (281)
|+.+...- ..++|+.|..||.+.+|.... . + ..+-..+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 45454433 346889999999999995310 0 0 01112222 23478999998 6777888
Q ss_pred EecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC---C---eEEEEecCCeEEEEeC
Q 023500 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM---D---VLFSCSYDNTIKVWWA 121 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~---~l~s~s~d~~v~~w~~ 121 (281)
.++....|.||-+....+.........|...|-+|+|-++. . .+++++-.|.+-+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888654322111111111356678888887753 2 6788899998887766
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.27 E-value=5.4 Score=32.53 Aligned_cols=237 Identities=11% Similarity=0.144 Sum_probs=97.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC-CeeEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~-~~~~~ 84 (281)
...+.|.. .+.++.| ..+.|..-......++.+..-..-.+....+....++..++. +..+. +|....+ ..++.
T Consensus 64 l~~I~f~~-~~g~ivG-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~--iy~T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDG-NEGWIVG-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGA--IYRTTDGGKTWQA 138 (302)
T ss_dssp EEEEEEET-TEEEEEE-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT----EEEESSTTSSEEE
T ss_pred EEEEEecC-CceEEEc-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCc--EEEeCCCCCCeeE
Confidence 44566653 3444444 445433322233334333211122333444444344433333 34454 3444443 44443
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
+. ..-...+..+.-.+++.+++.++......-|+.... .|+...+ .-..++.++.|.|++.+.+.. +.
T Consensus 139 ~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r------~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 139 VV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNR------NSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp EE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--------SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred cc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEcc------CccceehhceecCCCCEEEEe-CC
Confidence 22 233455788888899988877766555567754322 2322221 224679999999998765544 78
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
|.|++=+... ....|.....-.......+..+.+.+++.+-+++..+.+..-... +...+. .....
T Consensus 207 g~~~~s~~~~-------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg------GktW~~-~~~~~ 272 (302)
T PF14870_consen 207 GQIQFSDDPD-------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDG------GKTWQK-DRVGE 272 (302)
T ss_dssp TEEEEEE-TT-------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESST------TSS-EE--GGGT
T ss_pred cEEEEccCCC-------CccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCC------CccceE-Ccccc
Confidence 8777654110 001111100000012334678888876655545555544332111 111111 11111
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
.-...++.+.|.++++. ++ .+.||.|.=|
T Consensus 273 ~~~~n~~~i~f~~~~~g-f~-lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKG-FV-LGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEE-EE-E-STTEEEEE
T ss_pred CCCCceEEEEEcCCCce-EE-ECCCcEEEEe
Confidence 22345778888765543 43 4558876544
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.27 E-value=7 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=37.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-----CCCCCeeEEEEcCCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-----GHENEVKSVSWNASG 59 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~ 59 (281)
.-+.++|.|||++|++--..|.|++++..+.....+..+. .-.+....|+|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3467899999999987665688998876544322222111 125678899999873
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.97 E-value=7.3 Score=33.40 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=42.6
Q ss_pred EEEcCCCCEEEEeeCC----------C-cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 9 CAWSPSGKLLATASFD----------A-TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d----------~-~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
++.+|.|..+|....+ . .|.||+..+.... ...++. +.+.++.|+.+. .|+.-..||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~-~i~w~~--~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLS-SIPWDS--GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeE-EEEECC--CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4667777666665444 1 4888876654322 223333 788899998754 45555688999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=2.5 Score=36.68 Aligned_cols=108 Identities=9% Similarity=0.113 Sum_probs=68.1
Q ss_pred ceeEEEEcCCCCE-------EEEeeCCCcEEEEecCCCceeeeeeecCCC----CCeeEEEEcCCCCEEEEecCCCcEEE
Q 023500 5 TVRSCAWSPSGKL-------LATASFDATTCIWEDVGGDYECVATLEGHE----NEVKSVSWNASGTLLATCGRDKSVWI 73 (281)
Q Consensus 5 ~i~~~~~~~~~~~-------l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~l~s~~~d~~v~~ 73 (281)
.|+-+.+.|+.+. =+.|-.|+.|.-||+.-.....+...++|. ....|.+-. ...+|+.||.+|.||+
T Consensus 377 di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 377 DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRL 455 (644)
T ss_pred CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEe
Confidence 3677778887541 135778888999997532221122223332 233454433 3458999999999999
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
+|= .+. .....+.+-..+|..|..+.+|..|+..+...-+
T Consensus 456 Ydr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 456 YDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILATCKTYLL 495 (644)
T ss_pred ehh-hhh--hhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence 984 222 1223456677889999999999988776644433
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.72 E-value=7.7 Score=33.16 Aligned_cols=157 Identities=12% Similarity=0.214 Sum_probs=68.0
Q ss_pred cCCCCEEEEee--CC----CcEEEEecCCCceeeeeeecCC---CCCeeEEEEcCCCCEEEEecC---------------
Q 023500 12 SPSGKLLATAS--FD----ATTCIWEDVGGDYECVATLEGH---ENEVKSVSWNASGTLLATCGR--------------- 67 (281)
Q Consensus 12 ~~~~~~l~tg~--~d----~~i~lw~~~~~~~~~~~~~~~h---~~~v~~v~~~~~~~~l~s~~~--------------- 67 (281)
-|+|++++++- .+ |.+.+.|-.+. +.....+.. ..--+.+-|.|..+.++|+..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf--~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETF--EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccc--cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 46888887763 22 34667665443 333443322 223456777888888888643
Q ss_pred -----CCcEEEEEecCCCeeEEeEeecCCccceeEEEe--cCCCCe-EEEEecCCeEEEEeCCCCCCCCceee--eeeee
Q 023500 68 -----DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW--HPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCV--QTISE 137 (281)
Q Consensus 68 -----d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~--~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~--~~~~~ 137 (281)
-.++.+||+...+..+.+. +.......--|+| .|+..+ ++.+.-.++|..|.-.. ...|... .++..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~id-Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~--~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTID-LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD--DGEWAAEKVIDIPA 292 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEE-S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E--TTEEEEEEEEEE--
T ss_pred hcccccCeEEEEECCCCcEeeEEe-cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC--CCCeeeeEEEECCC
Confidence 3689999997654333222 2111112233444 455554 55555566666554322 2223222 22211
Q ss_pred c-------------cCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCC
Q 023500 138 S-------------NNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGAD 173 (281)
Q Consensus 138 ~-------------~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~ 173 (281)
. ..+-+..++.+..|.|.++|.... ..|.++-||+.
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 1 011145678999999988776654 68999999975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.3 Score=36.48 Aligned_cols=125 Identities=12% Similarity=0.168 Sum_probs=64.7
Q ss_pred cccEEEEEEccCC----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCC
Q 023500 143 SSTIWALSFNAKG----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218 (281)
Q Consensus 143 ~~~v~~~~~~~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~ 218 (281)
-..|..+.|.|-+ ..|+..-....|.+|-+.......... ...+.|.+.....--..-+-|+|+.-+++.-...
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~--l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL--LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc--eeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 3558899998842 256666778899999664222111110 0111121110001111235677776544443333
Q ss_pred cEE-EEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 219 SVQ-FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 219 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+. ++.+..++ . +..... ...+.|.|..|..+|+++++..+.-=--+|||-
T Consensus 134 dvSV~~sV~~d~----s---rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDS----S---RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCC----c---eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 332 33222211 1 111112 234679999999999988777665555778874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=7.9 Score=32.83 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=88.8
Q ss_pred eEEEEcCCCCEEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCCee
Q 023500 7 RSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~ 82 (281)
..++++|+++.+..+.. ++.+.+.|..+...... ...+- .+ ..++++|+|.++.. -..++.|.+.|.......
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 46789999975544443 67888888776654322 22322 33 78999999996554 457889999996533221
Q ss_pred E-EeEeecCCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 83 E-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 83 ~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. .......-...-..+.+.|+++.+...-.. +.+...+..... +..... ..+.. ....+.++|++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~-~~~~~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDL-PVGSG-APRGVAVDPAGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEecc-ccccC-CCCceeECCCCCEE
Confidence 0 000001112233567889999865443333 477666554431 111100 01111 34567888999877
Q ss_pred EEee-CCCcEEEEeCC
Q 023500 159 VSCS-DDLTIKIWGAD 173 (281)
Q Consensus 159 ~s~~-~d~~i~~w~~~ 173 (281)
.... ..+.+.+.|..
T Consensus 268 yv~~~~~~~V~vid~~ 283 (381)
T COG3391 268 YVANSQGGTVSVIDGA 283 (381)
T ss_pred EEEecCCCeEEEEeCC
Confidence 7763 34677777654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.29 E-value=4.5 Score=37.28 Aligned_cols=79 Identities=18% Similarity=0.320 Sum_probs=53.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecC---------CC--ceeeeee------e-cCCCCCeeEEEEcCC---CCEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDV---------GG--DYECVAT------L-EGHENEVKSVSWNAS---GTLL 62 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~---------~~--~~~~~~~------~-~~h~~~v~~v~~~~~---~~~l 62 (281)
-.|..+.++|+|+++|..|..+...+.=+. .+ ...|-.. + ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358889999999999988887755443211 01 1112111 1 234567889999996 4778
Q ss_pred EEecCCCcEEEEEecCCCee
Q 023500 63 ATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~ 82 (281)
+.-..|+++|+||+......
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEecCCEEEEEecCCCCCC
Confidence 88888999999999755433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=12 Score=33.41 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCCEEEEeeCCC------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEec
Q 023500 14 SGKLLATASFDA------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVM 77 (281)
Q Consensus 14 ~~~~l~tg~~d~------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~ 77 (281)
++.+++.||.++ .+..||..++++..+..+.........+. -++..++.||.++ ++..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 456777887653 46678877776644433322222222222 2567777787653 45566654
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.2 Score=23.45 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.0
Q ss_pred CCeeEEEEcCCCCeeEEEeCCC--CeEEEE
Q 023500 248 MDVNSVQWSPGERRLLASASDD--GMIKIW 275 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~D--g~v~iw 275 (281)
..-....|+|+|+.++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999888888877 777766
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.51 Score=43.35 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEE-----------EEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 11 WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV-----------SWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 11 ~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v-----------~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|-+..-++..+-.++.++|-..+.-.. ..+.+|...+..+ ..+|||..++.++.||.++.|.+.-.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 333455677777778888765433221 2233455444333 36899999999999999999987543
Q ss_pred C--eeEEeEeecCCc--cceeEEEecCC---------CCeEEEEecC-CeEEEEeCCCCCCCCceee
Q 023500 80 N--EFECVSVLQGHA--QDVKMVQWHPT---------MDVLFSCSYD-NTIKVWWAEDTDSDNWHCV 132 (281)
Q Consensus 80 ~--~~~~~~~~~~~~--~~v~~v~~~p~---------~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~ 132 (281)
. ...|...++.|. ..++.+ ++-+ ..++++++.- ..+++| ....|+|.
T Consensus 268 g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w-----~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFW-----AEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEe-----eccchhhh
Confidence 3 223444555565 233333 3332 1244555544 467888 44557666
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.64 E-value=3.9 Score=39.46 Aligned_cols=148 Identities=12% Similarity=0.184 Sum_probs=82.2
Q ss_pred eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE-cCC-------CCEEEEecCCCcEEEEEecCCCeeEEe------Ee
Q 023500 22 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NAS-------GTLLATCGRDKSVWIWEVMPGNEFECV------SV 87 (281)
Q Consensus 22 ~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~-~~~-------~~~l~s~~~d~~v~~w~~~~~~~~~~~------~~ 87 (281)
+.|+.+.+|+.+++. ....+.+-...|..|.. .|. =++++.-+.--.|.+.-+.-....... ..
T Consensus 96 TiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 458999999987632 13344554555555543 332 234444444455666665422211011 11
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce---e-------------eeeeeeccCCccccEEEEEE
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH---C-------------VQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~---~-------------~~~~~~~~~~h~~~v~~~~~ 151 (281)
+......|+|+....+|+.+++|-.| .+|.+.-...+.|. | +.++......+..+|..+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 22224567888877777777776554 34433211111221 0 11111111245678889999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCc
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
......+.+=+..|+++.|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 88888999999999999998753
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=7.9 Score=30.60 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
..+++.|+..+.+.--|...++...-+.+. ..+.+-+.- -|++++.|...+.+.+-+...+........+. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---TV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh---hh
Confidence 357778888887777777766543322222 333333322 57889999999999988887774332211111 11
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
-......+++.++..++.|+..+..|..+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccc
Confidence 12334568899999999999998887654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.17 E-value=7.9 Score=30.59 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=58.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE-EEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS-VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
|++++.|++.|.+.+-+.++++.-..... .+.|.+ ....+++..|..|+.|++...-|.... .++...+....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~---~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~ 136 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI---LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGG 136 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee---hhhhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCc
Confidence 56788999999998888887753222221 133332 234678999999999999998887533 34444443333
Q ss_pred ceeEEEecCCCCeEEEEecCCeE
Q 023500 94 DVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
.-.+-...|-...|+.+...|.+
T Consensus 137 ~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eeccceecCCCceEEEEeccceE
Confidence 33344455533444444555544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.21 Score=45.70 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=68.0
Q ss_pred ecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecC--CCee--EEeEeecCCccceeEEEecC---CCCeEEEEecCC
Q 023500 43 LEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMP--GNEF--ECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDN 114 (281)
Q Consensus 43 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~--~~~~--~~~~~~~~~~~~v~~v~~~p---~~~~l~s~s~d~ 114 (281)
++|..+.|-.+.|-. +..++. -.-|.+.||++.. ++.. -.+.........+.-|.|.| ..-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 356677787888733 222222 2335788998743 2210 11223333344456677776 344555556667
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEE-----------EEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA-----------LSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-----------~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
.+++...++... ....+|...+.. -..+|||+.|+....||.+++|.+.+
T Consensus 206 ~i~lL~~~ra~~----------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 206 EIRLLNINRALR----------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ceeEeeechHHH----------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 888775544311 111123222222 23689999999999999999997643
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.35 E-value=3.4 Score=35.25 Aligned_cols=102 Identities=16% Similarity=0.294 Sum_probs=67.8
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.++|.++.|++|.+.+|.--.|..|.+......+... ..+.+..+..|....|+.+ .-+|--...| +-++-+.+..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 4689999999999999999999999999864332211 1222333456888888765 3344333333 4666654332
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLF 108 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~ 108 (281)
..++..+.|...|+.-.|.|+.+.++
T Consensus 144 --rslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 144 --RSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred --hhhhhhhhcccCccEEEEccccceEe
Confidence 23455667888899999999887543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.13 E-value=14 Score=32.05 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=36.0
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE----eec-CCccceeEEEecCCC
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS----VLQ-GHAQDVKMVQWHPTM 104 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~----~~~-~~~~~v~~v~~~p~~ 104 (281)
.-+.++|.|+|++|++--..|.|++++-..... ..+. ... ........++++|+.
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCc
Confidence 347899999998888876678898887433221 1111 111 124567899999986
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.09 E-value=4 Score=34.85 Aligned_cols=77 Identities=8% Similarity=0.095 Sum_probs=42.5
Q ss_pred EEEecCCCCeEEEEecCCeEEE---EeCCCCC-CCCceeeeeeeeccCCccccEEEEEEcc-----------CCCEEEEe
Q 023500 97 MVQWHPTMDVLFSCSYDNTIKV---WWAEDTD-SDNWHCVQTISESNNGHSSTIWALSFNA-----------KGDKLVSC 161 (281)
Q Consensus 97 ~v~~~p~~~~l~s~s~d~~v~~---w~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------~~~~l~s~ 161 (281)
.++.+|++++++.+..+..+.+ |+..+.. ......+.............|+++.+-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4567888888888777766554 4332221 1111111111110001114566665533 45789999
Q ss_pred eCCCcEEEEeCC
Q 023500 162 SDDLTIKIWGAD 173 (281)
Q Consensus 162 ~~d~~i~~w~~~ 173 (281)
..+|.+++|...
T Consensus 86 ~ssG~vrfyte~ 97 (415)
T PF14655_consen 86 TSSGYVRFYTEN 97 (415)
T ss_pred ecccEEEEEecc
Confidence 999999999754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.74 E-value=11 Score=30.06 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCC--eeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 46 HENE--VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 46 h~~~--v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
|+.. ...+.|..+|.++-+.|.-| .|+.+|+..++.... ..+.. ..--..+.... +.++.-.-.++...+||.
T Consensus 41 Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP-RYFGEGITILG-DKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp --TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT-T--EEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc-cccceeEEEEC-CEEEEEEecCCeEEEEcc
Confidence 5543 34677777888888888877 677777766653222 12221 11112233332 233444467788899976
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+.- +.+.++.-. ..=+.++ .+++.|+....+..+.++|.+.
T Consensus 118 ~tl-----~~~~~~~y~-----~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 118 NTL-----KKIGTFPYP-----GEGWGLT--SDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp TTT-----EEEEEEE-S-----SS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred ccc-----eEEEEEecC-----CcceEEE--cCCCEEEEECCccceEEECCcc
Confidence 542 334444322 2235566 4566676666677888888653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=88.17 E-value=16 Score=31.38 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc--CCCCE-EEEecCCCcEEEEEecCCCeeEEeEeec--C-------
Q 023500 23 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQ--G------- 90 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~~--~------- 90 (281)
..+.+.+||..+.+......+........-|.|. |+..+ ++.+.-..+|..|--.....+....++. .
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 3467999999887643333332212234567774 44555 3333334445444332333333322221 0
Q ss_pred ----------CccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCC
Q 023500 91 ----------HAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 91 ----------~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~ 125 (281)
-..-|+.+..+.+.++| +++-.+|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 02346888999999865 566778999999998754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.96 E-value=22 Score=32.91 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=39.3
Q ss_pred cEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc
Q 023500 145 TIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 219 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~ 219 (281)
+-..+.|.|+|..+++-..|| .+.++..+... + +-...+ -..+...+..+|.-...+++.+..+.
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-H---Gef~lr------~~~dEk~~~~~wn~~s~vlav~~~n~ 317 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-H---GEFDLR------VGCDEKAFLENWNLLSTVLAVAEGNL 317 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccCCcc-c---CCcccc------CCchhhhhhhhhhHHHHHHHHhhcce
Confidence 334589999999999977555 45555322110 0 000000 01233445556665556666777788
Q ss_pred EEEEec
Q 023500 220 VQFFVE 225 (281)
Q Consensus 220 ~~~~~~ 225 (281)
+++|-.
T Consensus 318 ~~lwtt 323 (1243)
T COG5290 318 LKLWTT 323 (1243)
T ss_pred EEEEEc
Confidence 888843
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.77 E-value=4.3 Score=30.04 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=25.3
Q ss_pred CeeEEEEcCCC-----CeeEEEeCCCCeEEEEEcc
Q 023500 249 DVNSVQWSPGE-----RRLLASASDDGMIKIWELA 278 (281)
Q Consensus 249 ~v~~~~~~~~~-----~~~~~s~~~Dg~v~iw~~~ 278 (281)
.+..++|||.| +.+|+....++.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 5689999999999999854
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.65 E-value=13 Score=29.93 Aligned_cols=128 Identities=12% Similarity=0.163 Sum_probs=77.5
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCC
Q 023500 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 122 (281)
Q Consensus 43 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~ 122 (281)
+.|-...+.++.|+|+.+.|++........||=-..++-.. ...+.+ -..-..+.+...+++.++-=.+..+.+..++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir-tiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR-TIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEE-Eecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 44556679999999999988887777776777554444221 122233 2335667777777777777777788777665
Q ss_pred CCCCC--CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 123 DTDSD--NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 123 ~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
..... .......+.....+ +...-.++|+|....|...-.-.-+++|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 33111 01101112111111 3445679999988877777766667887654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.62 E-value=11 Score=32.30 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=55.5
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+.+.-|-+...+...++.......++|.+++|+||.+.++.-=.|++|.++.....+. .+.....+......+..
T Consensus 43 ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-----~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 43 GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-----QLEYTQECKTKNANILG 117 (657)
T ss_pred CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-----hhHHHHHhccCcceeEE
Confidence 3345566554332222333333455899999999999999999999998886521110 11111122233455777
Q ss_pred EEEccCCCEEEEeeCCCcEEEEe
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
..|+.+ .-++.....| +.+|-
T Consensus 118 F~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred EEEecC-eeEEEEecCC-eEEEE
Confidence 788766 3455555555 55664
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.55 E-value=17 Score=35.44 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+..+|..++... .+.++.+-++.|+|++|++..
T Consensus 240 ~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 5677899998876 467888899999999999864
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=21 Score=31.82 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEEEecC
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMP 78 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~~~~ 78 (281)
++++++.||.++ .+..||+.++++.....+...... .+++ .-++...+.||.+ +.+..||...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 577888888663 466788877766544433211111 1222 2356667777732 3566777653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=20 Score=31.49 Aligned_cols=104 Identities=9% Similarity=0.031 Sum_probs=52.7
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeE
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVS 86 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~ 86 (281)
++.+++.||.++ .+..||+.++.+..+..+.........+ .-++...+.||.++ ++..||... +.+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-AAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC-CeEEECC
Confidence 456778888653 4667888777665555443222222222 23667777787643 566677532 2233222
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCC---eEEEEeCC
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDN---TIKVWWAE 122 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~---~v~~w~~~ 122 (281)
.+.........+ .-++.+++.|+.++ ++..||.+
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCC
Confidence 222111111111 22456677777554 45566554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.07 E-value=18 Score=34.82 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=67.7
Q ss_pred CeeEEEEcCCCCEE--EEecCCCcEEEEEecCCCeeE--EeE------eecCCccceeEEEecCCCC-eEEEEecCCeEE
Q 023500 49 EVKSVSWNASGTLL--ATCGRDKSVWIWEVMPGNEFE--CVS------VLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIK 117 (281)
Q Consensus 49 ~v~~v~~~~~~~~l--~s~~~d~~v~~w~~~~~~~~~--~~~------~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~ 117 (281)
++..+..++|+... +..+.+-.|..+|+....+.. ... +......-.-++.|+|.-. ..+.+..|..|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44445556776543 334445578889986432110 011 1111122335778988744 456677888888
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
+.-+.... ..+..+ .-...+++++|+|.|..++.|...|++.=|...
T Consensus 182 V~~~~~~~----~~v~s~-----p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLA----QNVTSF-----PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhh----hhhccc-----CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 76443211 011111 124567899999999999999999998877543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.06 E-value=21 Score=30.56 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCEEEEe-eCCC----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----------C
Q 023500 6 VRSCAWSPSGKLLATA-SFDA----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----------K 69 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg-~~d~----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----------~ 69 (281)
+....++|+|+++|-+ +..| .+++.|..+++... ..+..- ....+.|.++++.|+-...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3467899999988744 4444 48899988875422 122211 11239999998765544322 2
Q ss_pred cEEEEEecCCCeeEEeEeecCCccc--eeEEEecCCCCeEEEEe-cCCe---EEEEeCCC
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQD--VKMVQWHPTMDVLFSCS-YDNT---IKVWWAED 123 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~--v~~v~~~p~~~~l~s~s-~d~~---v~~w~~~~ 123 (281)
.|+.|.+-..... ...++...... ...+..++++++++..+ ...+ +.+.+...
T Consensus 203 ~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3566665433321 12334333322 56788899999765433 3333 44444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.74 E-value=4.3 Score=36.26 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred CCCCEEEEeeCCCcEEEEecCC-----CceeeeeeecC--------------------CCCCeeEEEEcC----CCCEEE
Q 023500 13 PSGKLLATASFDATTCIWEDVG-----GDYECVATLEG--------------------HENEVKSVSWNA----SGTLLA 63 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~--------------------h~~~v~~v~~~~----~~~~l~ 63 (281)
++...++.+..||.+...+... ..+.. ..+.. -...+..++.++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-ELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEE-EEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 3566777788888877665432 11111 01111 123455666666 678999
Q ss_pred EecCCCcEEEEEecCCCe
Q 023500 64 TCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~ 81 (281)
+.+.|+++|+||+.....
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999976653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.69 E-value=11 Score=32.91 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=52.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.|..+..++.|..+|-.|-+|.+..+=+. .+..-..++..+..|+|=.|. -+..|++.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~--rwG~~s~~eDgk~~v~CRt~~-i~~~~ftss~----------------- 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK--RWGKNSEFEDGKSTVNCRTTP-VAERFFTSST----------------- 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh--hcCccceecCCCceEEEEeec-ccceeeccCC-----------------
Confidence 46778889999999888888876654211 111122333223334443332 2222222211
Q ss_pred eEeecCCccceeEEEecCCC---CeEEEEecCCeEEEEeCCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~---~~l~s~s~d~~v~~w~~~~ 123 (281)
.-.+..++|||+. .++..-+.|+++++|+...
T Consensus 165 -------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 165 -------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred -------ceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 1125567788875 3566667888999987754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.60 E-value=22 Score=30.41 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred eEEEEcCCCCEEEEe-cCC----CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-----------
Q 023500 51 KSVSWNASGTLLATC-GRD----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----------- 114 (281)
Q Consensus 51 ~~v~~~~~~~~l~s~-~~d----~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----------- 114 (281)
....++|+|++++-+ +.. .++++.|+..+.... ..+. ......+.|.++++.++-...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 356889999987632 332 469999998764322 1111 11123489999988766555333
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.|+.|.+.+..... .. +.... ........+..++++++|+...
T Consensus 203 ~v~~~~~gt~~~~d-~l---vfe~~-~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 203 QVYRHKLGTPQSED-EL---VFEEP-DEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EEEEEETTS-GGG--EE---EEC-T-TCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEEEEECCCChHhC-ee---EEeec-CCCcEEEEEEecCcccEEEEEE
Confidence 36777665543211 11 11111 1112245678889998766543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.2 Score=29.86 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred ecCCCCeEEEEecCCeEEEEeCCCCCCCCce-eeeeeeec----cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 100 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH-CVQTISES----NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 100 ~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~-~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+...++++++.+.+|.+++||+......-.. .+..+... .......|..+.++.+|.-+++-+ +|....|+.++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4456778999999999999998764211000 00011100 002446678888888887666654 57788888765
Q ss_pred c
Q 023500 175 T 175 (281)
Q Consensus 175 ~ 175 (281)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.71 E-value=20 Score=33.69 Aligned_cols=156 Identities=11% Similarity=0.165 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCCeeEEeEeecCCccceeEEE-ecCCCC-------eEEEEecCCeEEEEeCCCCC-CCCceee-eeee
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ-WHPTMD-------VLFSCSYDNTIKVWWAEDTD-SDNWHCV-QTIS 136 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~-~~p~~~-------~l~s~s~d~~v~~w~~~~~~-~~~~~~~-~~~~ 136 (281)
.|+.+.+|+..++++++++..+. | .|..|+ +-|..+ .++..++...+.++-+...+ ....... ..+.
T Consensus 100 ~dnkLiLWnynn~neyq~idd~s-h--tIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~ 176 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFS-H--TILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLV 176 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhh-h--heeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceE
Confidence 36889999999888776654332 2 233332 233322 12222233334444332111 0000000 0011
Q ss_pred eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccc------------ccCCCCcccceeEEeecccCcceEEEE
Q 023500 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM------------QSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 137 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
. ....-.|.|+.-+-+|+.+.+|-.| ..+|...-... .+...+..+-+.....+.+..+|..+.
T Consensus 177 v--svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~ 252 (1263)
T COG5308 177 V--SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLA 252 (1263)
T ss_pred E--eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhhee
Confidence 1 1122457777777789999988887 66774321000 000000111111122223455566665
Q ss_pred eCC-CceeeecCCCCcEEEEecccCC
Q 023500 205 WSR-EGIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 205 ~~~-~~~~~~~~~d~~~~~~~~~~~~ 229 (281)
.++ .|.+.+-.....++-|.+.+..
T Consensus 253 vDqsRg~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 253 VDQSRGLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred ecccccceeeecccceeeeEeeeccc
Confidence 554 3555555555666666665543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=84.34 E-value=11 Score=29.09 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=40.0
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeee-----eec-------CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 11 WSPSGKLLATASFDATTCIWEDVGGDYECVA-----TLE-------GHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 11 ~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~-----~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
+...+++|+.-..+|.+.+||..+.+..... .+. .....|..+.++.+|.-|++-+. |....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence 5567889988999999999998765421100 011 23455666666666665555443 45566654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.29 E-value=25 Score=29.88 Aligned_cols=155 Identities=12% Similarity=0.165 Sum_probs=88.1
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCCCeeE
Q 023500 8 SCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFE 83 (281)
Q Consensus 8 ~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~ 83 (281)
.+++++.+. .+++...++.+.+.|........... .+. .-..++++|++..+..+.. ++++.+.|-......
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~-vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~- 153 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP-VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT- 153 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee-ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE-
Confidence 567888777 56666667889998855543221111 222 4457899999877665544 566666665433321
Q ss_pred EeEeecCCccceeEEEecCCCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.....+-.+ ..+.+.|+++.++ +-..++.+.+.+....... + ...... ..-......+.++|++.++....
T Consensus 154 -~~~~vG~~P--~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~--~--~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 154 -ATIPVGNTP--TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV--R--GSVGSL-VGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred -EEEecCCCc--ceEEECCCCCeEEEEecCCCeEEEEeCCCccee--c--cccccc-cccCCCCceEEECCCCCEEEEEe
Confidence 222233222 7889999999554 4457889999875443210 0 000000 01112345688899998555443
Q ss_pred C-C--CcEEEEeCCc
Q 023500 163 D-D--LTIKIWGADI 174 (281)
Q Consensus 163 ~-d--~~i~~w~~~~ 174 (281)
. + +.+...|...
T Consensus 226 ~~~~~~~v~~id~~~ 240 (381)
T COG3391 226 DGSGSNNVLKIDTAT 240 (381)
T ss_pred ccCCCceEEEEeCCC
Confidence 3 2 4777776653
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.53 E-value=23 Score=28.90 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=65.8
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecC-----CCceeeeeeecC-----CCCCeeEEEEcCCCC------------EEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDV-----GGDYECVATLEG-----HENEVKSVSWNASGT------------LLA 63 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~-----~~~~~~~~~~~~-----h~~~v~~v~~~~~~~------------~l~ 63 (281)
-+-++++|.+.+-++....+...+||.. .-....+.++-. -....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999988888888999999976 112122223221 123566777775433 357
Q ss_pred EecCCCcEEEEEecCCCee--EEeEeec-CCccce-eEEEecC--CCCeEEEEe-cCCeEEEEeC
Q 023500 64 TCGRDKSVWIWEVMPGNEF--ECVSVLQ-GHAQDV-KMVQWHP--TMDVLFSCS-YDNTIKVWWA 121 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~~--~~~~~~~-~~~~~v-~~v~~~p--~~~~l~s~s-~d~~v~~w~~ 121 (281)
.+++||+|.-|.-...... ....++. .....| ..+++.. .++.|+.+- ..++|.++|-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 7889999999984333220 0111111 111223 3444443 345555443 4568888754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.28 E-value=5.3 Score=31.97 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=42.3
Q ss_pred EEcCCCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec
Q 023500 10 AWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG 66 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 66 (281)
.|||||++|...-+| |.|=|||.. ..+..+..+..|.-.=..+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999988655444 568899875 44556777777777677889999999887764
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.75 E-value=26 Score=32.26 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCEEEEecCCCcEEEEEecC-------C----Ce------eEEeEeecCCccceeEEEec--CCCCeEEEEecCCeEEEE
Q 023500 59 GTLLATCGRDKSVWIWEVMP-------G----NE------FECVSVLQGHAQDVKMVQWH--PTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~-------~----~~------~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~d~~v~~w 119 (281)
...|+.+.+||.|.+|.+.. . .. ..+-..+.- ..-+.+++++ ....+||.++....|-||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45788999999999997631 0 00 001111221 2346788888 777788888888888888
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC---C---EEEEeeCCCcEEEEeC
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---D---KLVSCSDDLTIKIWGA 172 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~---~l~s~~~d~~i~~w~~ 172 (281)
.+...+.... ... ...|...|.++.|-++. . .+++++=.|.+-+|++
T Consensus 193 af~l~~~r~~-~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFY-HVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccc-ccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6654311110 000 01244568889997643 2 6777888998888876
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=35 Score=30.05 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=37.2
Q ss_pred CCCCEEEEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC---cEEEEEec
Q 023500 13 PSGKLLATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK---SVWIWEVM 77 (281)
Q Consensus 13 ~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---~v~~w~~~ 77 (281)
-++.+.+.||.++ .+..||+.++++..+..+.........+ .-+|+..+.||.++ ++..||..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCC
Confidence 3677888888643 5778888777665555443222222222 23677777777653 45667754
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=82.00 E-value=23 Score=30.41 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=44.1
Q ss_pred EEEEcCCCCEEEEeeCCCcEEE---EecC-----CCceee--eeeecCCC-CCeeEEEEc-----------CCCCEEEEe
Q 023500 8 SCAWSPSGKLLATASFDATTCI---WEDV-----GGDYEC--VATLEGHE-NEVKSVSWN-----------ASGTLLATC 65 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~l---w~~~-----~~~~~~--~~~~~~h~-~~v~~v~~~-----------~~~~~l~s~ 65 (281)
.++.+|++++||.+..+..+.+ |+.. .+.+.. ...+..-. +.|+++.+- ||...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988886665 6331 122211 12222111 466666543 345678999
Q ss_pred cCCCcEEEEEe
Q 023500 66 GRDKSVWIWEV 76 (281)
Q Consensus 66 ~~d~~v~~w~~ 76 (281)
-.+|.|+++..
T Consensus 86 ~ssG~vrfyte 96 (415)
T PF14655_consen 86 TSSGYVRFYTE 96 (415)
T ss_pred ecccEEEEEec
Confidence 99999999986
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.60 E-value=37 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEEEccCC---CEEEEeeCCCcEEEEeCC
Q 023500 146 IWALSFNAKG---DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 146 v~~~~~~~~~---~~l~s~~~d~~i~~w~~~ 173 (281)
+..++|+|+. ..|..-+.|..||+|+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecC
Confidence 4557888865 577788889999999864
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.22 E-value=30 Score=28.71 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=23.0
Q ss_pred CeeEEEEcCCCCeeEE-EeCCCCeEEEEEccc
Q 023500 249 DVNSVQWSPGERRLLA-SASDDGMIKIWELAN 279 (281)
Q Consensus 249 ~v~~~~~~~~~~~~~~-s~~~Dg~v~iw~~~~ 279 (281)
++.+++.+.+.+.+|. ....++.|.+||..+
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 5778999887765554 456689999999765
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.21 E-value=0.23 Score=42.28 Aligned_cols=143 Identities=16% Similarity=0.358 Sum_probs=91.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEe
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
..|.|.+.-++.++.+..+..||..+... -... .++....++|..+|..+ +.+-..+.+.+||+..... +.+.
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~---le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE- 113 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVI---LELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE- 113 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhccee---cccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh-
Confidence 45778776688888899999998654321 1111 34555677888877764 4556678999999965432 1111
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC-ccccEEEEEEccCCCEEEEeeCCCc
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
.+....-.-+.|++....++.+-..+.+.++.....+. .. ..| |..++.++++.+.+ +.+.++.|.+
T Consensus 114 -~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~--------ii--v~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 114 -SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR--------II--VMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred -ccCcchHHHHhhccCCccccccccccceEEEeccchhh--------hh--hhcccccceeEEEecccc-eeeecCcHHH
Confidence 11122223367888888888888889999985443321 11 124 88889999999886 5556666655
Q ss_pred EEE
Q 023500 167 IKI 169 (281)
Q Consensus 167 i~~ 169 (281)
+.+
T Consensus 182 L~v 184 (615)
T KOG2247|consen 182 LSV 184 (615)
T ss_pred HHH
Confidence 543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=80.96 E-value=11 Score=33.82 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=39.1
Q ss_pred CCCCEEEEecCCCcEEEEEecC----CCeeEEeE--------eec-----------CCccceeEEEecC----CCCeEEE
Q 023500 57 ASGTLLATCGRDKSVWIWEVMP----GNEFECVS--------VLQ-----------GHAQDVKMVQWHP----TMDVLFS 109 (281)
Q Consensus 57 ~~~~~l~s~~~d~~v~~w~~~~----~~~~~~~~--------~~~-----------~~~~~v~~v~~~p----~~~~l~s 109 (281)
++...++.+..||.+....... +....... .+. .-......+..++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777788888888777653 11111100 000 0123345566666 6678999
Q ss_pred EecCCeEEEEeCCCCC
Q 023500 110 CSYDNTIKVWWAEDTD 125 (281)
Q Consensus 110 ~s~d~~v~~w~~~~~~ 125 (281)
.+.|+++|+|++.+..
T Consensus 236 l~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQ 251 (547)
T ss_dssp EETTSEEEEEETTTTC
T ss_pred EeCCCeEEEEECCCCe
Confidence 9999999999987653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.20 E-value=37 Score=29.08 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=77.5
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE--E
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--C 84 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~--~ 84 (281)
..+..+++|.+++.|.....++-||.-..-+..+. ..-...+..+.|.+++..++.+ .+|.+. |....+...+ .
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 34556778887776654433334433211122222 2334678899999998887766 445543 4433332111 0
Q ss_pred eEeec--CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 85 VSVLQ--GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 85 ~~~~~--~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..... .....+..+.|.+++.. +.++..|.+..... .-..|+..... ..-....+.+.|.++++-+++|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~D---~G~tW~~~~~~----~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRSTD---GGKSWKRDKGA----DNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeCC---CCcceeEcccc----CCCCcceeEEEEcCCCceEEEe-
Confidence 11111 11234788888877655 45566787766421 11223322111 1123456788887776666554
Q ss_pred CCCcEEE
Q 023500 163 DDLTIKI 169 (281)
Q Consensus 163 ~d~~i~~ 169 (281)
.+|.|--
T Consensus 389 ~~G~il~ 395 (398)
T PLN00033 389 NDGVLLR 395 (398)
T ss_pred CCcEEEE
Confidence 5666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 281 | ||||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-74 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 4e-08 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-47 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-27 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-18 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-18 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-18 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-18 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-18 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-18 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-18 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-18 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-18 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-18 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-18 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-18 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-18 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-18 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-18 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-18 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-18 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-14 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-14 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-13 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-13 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 5e-12 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 6e-12 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 6e-12 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-12 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-10 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-09 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-09 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-09 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-09 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-09 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-09 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-08 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-08 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 5e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-08 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 7e-08 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 8e-08 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 8e-08 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 1e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 9e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-07 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 5e-07 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 7e-07 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 8e-07 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 9e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-06 | ||
| 3ewe_A | 349 | Crystal Structure Of The Nup85SEH1 COMPLEX Length = | 5e-06 | ||
| 3ewe_A | 349 | Crystal Structure Of The Nup85SEH1 COMPLEX Length = | 5e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 5e-06 | ||
| 3f3f_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 5e-06 | ||
| 3f3f_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 5e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-06 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 5e-06 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 5e-06 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 6e-06 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 6e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-06 | ||
| 3f3p_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 8e-06 | ||
| 3f3p_A | 351 | Crystal Structure Of The Nucleoporin Pair Nup85-Seh | 6e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 2e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 6e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-04 | ||
| 1k8k_C | 372 | Crystal Structure Of Arp23 COMPLEX Length = 372 | 8e-05 | ||
| 3dxk_C | 372 | Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN | 1e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-04 |
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349 | Back alignment and structure |
|
| >pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351 | Back alignment and structure |
|
| >pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351 | Back alignment and structure |
|
| >pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372 | Back alignment and structure |
|
| >pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 328 bits (843), Expect = e-113
Identities = 135/283 (47%), Positives = 182/283 (64%), Gaps = 12/283 (4%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H RTVR AWSP G LA+ASFDATTCIW+ D+ECV TLEGHENEVKSV+W SG L
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LATC RDKSVW+WEV +E+ECVSVL H QDVK V WHP+ ++L S SYD+T+K++
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY-- 177
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ D+W C T+ GH ST+W+L+F+ G +L SCSDD T++IW + + G
Sbjct: 178 -REEEDDWVCCATLE----GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232
Query: 182 GYA----SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236
+ SW+ +CT+SG+H RTI+ + W + +A+ DD+++ F E + P++
Sbjct: 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ +AH DVN V W+P E LLAS SDDG + W+
Sbjct: 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 9e-59
Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 30/288 (10%)
Query: 2 HTR-TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASG 59
H AW+P+G LLA+ D IW G + C + EGH+ V+ V+W+ G
Sbjct: 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
LA+ D + IW+ +FECV+ L+GH +VK V W P+ ++L +CS D ++ VW
Sbjct: 74 NYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 120 WAEDTDSDN-WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
+ D ++ + CV + N H+ + + ++ + L S S D T+K++ +
Sbjct: 133 ---EVDEEDEYECVSVL----NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE----- 180
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV-------QFFVESKDDL 230
D W T+ G H+ T++S+ + G +AS + D +V +
Sbjct: 181 EDD----WVCCATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
PS+K + H + + W LA+A D I++++
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQED 282
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 5e-44
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 26/245 (10%)
Query: 38 ECVATLEGH-ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 96
+ + H ++ ++WN +GTLLA+CG D+ + IW + + +GH + V+
Sbjct: 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR 65
Query: 97 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156
V W P + L S S+D T +W + D++ CV T+ GH + + ++++ G+
Sbjct: 66 KVAWSPCGNYLASASFDATTCIW---KKNQDDFECVTTL----EGHENEVKSVAWAPSGN 118
Query: 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA 215
L +CS D ++ +W D D Y + ++ H + + V W ++AS +
Sbjct: 119 LLATCSRDKSVWVWEVD-----EEDEY---ECVSVLNS-HTQDVKHVVWHPSQELLASAS 169
Query: 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
DD+V+ + E +DD + + H+ V S+ + P +R LAS SDD ++IW
Sbjct: 170 YDDTVKLYREEEDDWV-------CCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
Query: 276 ELANT 280
Sbjct: 222 RQYLP 226
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-21
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-------YECVATLEGHENEVKSVS 54
H+RT+ AW LATA D ++++ + H +V V+
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 55 WN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH 91
WN LLA+C D V W+ E + H
Sbjct: 311 WNPKEPGLLASCSDDGEVAFWKYQRP---EGLHHHHHH 345
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 185 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243
S L + + D + + W+ G ++AS D ++ + S+
Sbjct: 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW-----GTEGD-SWICKSVLS 57
Query: 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ H V V WSP LASAS D IW+
Sbjct: 58 EGHQRTVRKVAWSPCGNY-LASASFDATTCIWKKN 91
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 1e-99
Identities = 104/286 (36%), Positives = 149/286 (52%), Gaps = 24/286 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWN 56
H + +RS AW P LLA SFD+T IW D + + +A +EGHENEVK V+W+
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
G LATC RDKSVWIWE E +EC+SVLQ H+QDVK V WHP+ +L S SYD+T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD--KLVSCSDDLTIKIWGAD 173
+++W D+W CV + NGH T+W+ F+ +L S SDD T+++W
Sbjct: 177 VRIW---KDYDDDWECVAVL----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233
W + H R +++V W G+IAS AD + + + +DG
Sbjct: 230 GDDED---DQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY-----EEVDG 281
Query: 234 PSYKMLLKKEKAHDMDVNSVQW-SPGERRLLASASDDGMIKIWELA 278
+ ++N V+W + +LA+ DDG++ W L
Sbjct: 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 6e-60
Identities = 65/286 (22%), Positives = 119/286 (41%), Gaps = 28/286 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASG 59
+ + S +S +LAT S D + D+ V H+ ++SV+W
Sbjct: 13 YKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT 70
Query: 60 TLLATCGRDKSVWIWEVMPG----NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
+LLA D +V IW E + +++++GH +VK V W L +CS D +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
+ +W D + + C+ + HS + + ++ L S S D T++IW
Sbjct: 131 VWIWET-DESGEEYECISVL----QEHSQDVKHVIWHPSEALLASSSYDDTVRIW----- 180
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESKDDLID 232
+ D W + ++G H+ T++S + + + SG+ D +V+ + DD D
Sbjct: 181 KDYDDD----WECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ H V +V W +AS DG++ ++E
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNGL--IASVGADGVLAVYEEV 279
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 5e-45
Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF-ECVSVLQGHAQDVK 96
+ +L+ ++ ++ S + S +LAT D+ + + V + V H + ++
Sbjct: 5 NLIKSLKLYKEKIWSFDF--SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 97 MVQWHPTMDVLFSCSYDNTIKVWWAED--TDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V W P +L + S+D+T+ +W E+ + + I GH + + ++++
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE----GHENEVKGVAWSND 118
Query: 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213
G L +CS D ++ IW D + + + + H + + V W ++AS
Sbjct: 119 GYYLATCSRDKSVWIWETD-------ESGEEYECISVLQE-HSQDVKHVIWHPSEALLAS 170
Query: 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMI 272
+ DD+V+ + D + H+ V S + L S SDD +
Sbjct: 171 SSYDDTVRIW-----KDYDDDWE--CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 273 KIWELAN 279
++W+
Sbjct: 224 RVWKYMG 230
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 7e-34
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 19/198 (9%)
Query: 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141
+ L+ + + + + +L + S D IK+ D++ + + E
Sbjct: 4 INLIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLV---SVKYDDFTLIDVLDE--TA 56
Query: 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201
H I ++++ L + S D T+ IW + +S D L I G H+ +
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE----ESADRTFEMDLLAIIEG-HENEVK 111
Query: 202 SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260
V WS +G +A+ + D SV + + + + + H DV V W P E
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIW-----ETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 261 RLLASASDDGMIKIWELA 278
LAS+S D ++IW+
Sbjct: 167 L-LASSSYDDTVRIWKDY 183
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-80
Identities = 47/281 (16%), Positives = 94/281 (33%), Gaps = 17/281 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ A++ T + ++E G ++ T H+ V V W
Sbjct: 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR 69
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ TC +D++ +++E P ++ VL + V+W P D S I V +
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ ++D W STI +L ++ L + D + A + + +
Sbjct: 130 -EQENDWWVSKHLK----RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184
Query: 182 GYASWR-----HLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
+ W + + +V +S G +A D SV
Sbjct: 185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIA-----YPSAPEQ 239
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
L K + + S+ W+ E ++A+ + I +
Sbjct: 240 PPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPILLQG 279
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-42
Identities = 44/247 (17%), Positives = 75/247 (30%), Gaps = 25/247 (10%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
L ++N+ T T V ++E GN ++ H + V V W
Sbjct: 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQ-DGNGWKHARTFSDHDKIVTCVDWA 64
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
P + + +CS D V+ E W + + + ++ DK
Sbjct: 65 PKSNRIVTCSQDRNAYVY--EKRPDGTWKQTLVL----LRLNRAATFVRWSPNEDKFAVG 118
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S I + + W TI S+ W ++A+G AD
Sbjct: 119 SGARVISVCYFE-------QENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCADRKA 170
Query: 221 QFFVESKDDLIDGPSYKM--------LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272
D+ P + + E V++V +SP LA A D +
Sbjct: 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAGHDSSV 229
Query: 273 KIWELAN 279
I +
Sbjct: 230 TIAYPSA 236
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-41
Identities = 38/295 (12%), Positives = 88/295 (29%), Gaps = 35/295 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASG 59
R WSP+ A S + E + + + S+ W+ +
Sbjct: 99 LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158
Query: 60 TLLATCGRDKSVWIWEVMPGNE--------------FECVSVLQGHAQDVKMVQWHPTMD 105
LLA D+ ++ + F V V V + P+ +
Sbjct: 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN 218
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
L +D+++ + + + T+ + +L + + + + +
Sbjct: 219 ALAYAGHDSSVTIAYP-SAPEQPPRALITVK----LSQLPLRSLLWANESAIVAAGYNYS 273
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225
I + G + + W H + +T F+ +
Sbjct: 274 PILLQGNE----------SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQW---SPGERRLLASASDDGMIKIWEL 277
++ + G S + + H + +++ +PG S+ DG + +W L
Sbjct: 324 FRNMDLKG-SSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-29
Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 23/191 (12%)
Query: 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145
VL + ++ + + N ++++ + D + W +T + H
Sbjct: 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELY---EQDGNGWKHARTF----SDHDKI 57
Query: 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
+ + + K +++V+CS D ++ +W+ + +R V W
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--------TWKQTLVLLR-LNRAATFVRW 108
Query: 206 SREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264
S A G+ + + + ++ + S+ W P LA
Sbjct: 109 SPNEDKFAVGSGARVISVC-----YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL-LA 162
Query: 265 SASDDGMIKIW 275
+ D +
Sbjct: 163 AGCADRKAYVL 173
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-17
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 134 TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193
S+ + + +FN++ + V+ + ++++ D W+H T S
Sbjct: 2 ATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN---------GWKHARTFS 52
Query: 194 GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252
HD+ + V W+ + I + + D + + + ++K L +
Sbjct: 53 D-HDKIVTCVDWAPKSNRIVTCSQDRNAYVY-----EKRPDGTWKQTLVLL-RLNRAATF 105
Query: 253 VQWSPGERRLLASASDDGMIKIW 275
V+WSP E + A S +I +
Sbjct: 106 VRWSPNEDK-FAVGSGARVISVC 127
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 196 HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254
+ + ++ + + A + V+ + + + HD V V
Sbjct: 10 LPKPSYEHAFNSQRTEFVTTTATNQVELY-----EQDGNGW--KHARTFSDHDKIVTCVD 62
Query: 255 WSPGERRLLASASDDGMIKIWELANT 280
W+P R+ + S D ++E
Sbjct: 63 WAPKSNRI-VTCSQDRNAYVYEKRPD 87
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 2e-57
Identities = 74/296 (25%), Positives = 114/296 (38%), Gaps = 44/296 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK +AT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 68 TILASCSYDGKVMIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-------------AKGDKLVSCSDD 164
V + + I + H+ + + S+ + K V+ D
Sbjct: 127 VV---EFKENGTTSPIII----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSV 220
+KIW + ++ T+ G H + V WS +AS + D +
Sbjct: 180 NLVKIWKYN-------SDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIW 275
+ D GP K LLK+EK + WS G +LA + D + +W
Sbjct: 232 IIW---TQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSG--NVLALSGGDNKVTLW 281
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-40
Identities = 54/261 (20%), Positives = 89/261 (34%), Gaps = 43/261 (16%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G +ATC DK++ I+EV + + L GH V V
Sbjct: 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVD 60
Query: 100 WHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKG 155
W +L SCSYD + +W ++ W + + HS+++ ++ + + G
Sbjct: 61 WAHPKFGTILASCSYDGKVMIW---KEENGRWSQIAVHA----VHSASVNSVQWAPHEYG 113
Query: 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG------ 209
L+ S D + + + I H + S W+
Sbjct: 114 PMLLVASSDGKVSVVEFK-------EN--GTTSPIIIDA-HAIGVNSASWAPATIEEDGE 163
Query: 210 --------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP--GE 259
+G AD+ V+ + +L + H V V WSP
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 260 RRLLASASDDGMIKIWELANT 280
R +AS S D IW N
Sbjct: 219 RSYMASVSQDRTCIIWTQDNE 239
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-40
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 23/193 (11%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--- 56
H+ +V S W+P G +L AS D + E ++ H V S SW
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157
Query: 57 ----------ASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMD 105
T G D V IW+ + + S L+GH+ V+ V W PT+
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 106 V---LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+ + S S D T +W D++ +T+ + +W S++ G+ L
Sbjct: 218 LRSYMASVSQDRTCIIW---TQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSG 273
Query: 163 DDLTIKIWGADIT 175
D + +W ++
Sbjct: 274 GDNKVTLWKENLE 286
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-19
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATL---EGHENEVKSVSW 55
H+ VR AWSP+ +A+ S D T IW TL E + + SW
Sbjct: 203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH 91
+ SG +LA G D V +W+ ++E + H
Sbjct: 263 SLSGNVLALSGGDNKVTLWKENLEGKWEP--AGEVH 296
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE 47
+ +WS SG +LA + D +W + + E H+
Sbjct: 253 FPDVLWRASWSLSGNVLALSGGDNKVTLW-KENLEGKWEPAGEVHQ 297
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 239 LLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELANT 280
++ AH+ ++ G + +A+ S D IKI+E+
Sbjct: 1 MVVIANAHNEMIHDAVMDYYG--KRMATCSSDKTIKIFEVEGE 41
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-56
Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 37/281 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT+ V S +SP+G+ LA++S D IW G + T+ GH+ + V+W++ L
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 79
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + DK++ IW+V G +C+ L+GH+ V ++P +++ S S+D ++++W
Sbjct: 80 LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 134
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D C++T+ HS + A+ FN G +VS S D +IW SG
Sbjct: 135 ---DVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----ASG- 181
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ L T+ + + V +S G I + D++++ + D G L
Sbjct: 182 -----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-----DYSKG----KCL 227
Query: 241 KKEKAHDMDVNSVQWSPGER--RLLASASDDGMIKIWELAN 279
K H + + + + + S S+D ++ IW L
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 7e-53
Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 39/281 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + AWS LL +AS D T IW+ G +C+ TL+GH N V ++N L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+SV IW+V G +C+ L H+ V V ++ ++ S SYD ++W
Sbjct: 122 IVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-- 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D+ + C++T+ + + + + F+ G +++ + D T+K+W D
Sbjct: 177 ---DTASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLW----------D 220
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSVQFFVESKDDLIDGPSYK 237
Y+ + L T +G H + + + I SG+ D+ V + +L
Sbjct: 221 -YSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW-----NLQTKE--- 270
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLL-ASASDDGMIKIWEL 277
+++K + H V S P E + A+ +D IK+W+
Sbjct: 271 -IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-45
Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 40/262 (15%)
Query: 19 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78
AT S V +Y TL GH V SV ++ +G LA+ DK + IW
Sbjct: 1 ATQSKPTP------VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 54
Query: 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138
G + + GH + V W ++L S S D T+K+W D + C++T+
Sbjct: 55 G---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL--- 103
Query: 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198
GHS+ ++ +FN + + +VS S D +++IW + + L T+ H
Sbjct: 104 -KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------KTGKCLKTLPA-HSD 150
Query: 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
+ +VH++R+G +I S + D + + D G K L+ + V+ V++SP
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLI---DDDNPPVSFVKFSP 202
Query: 258 GERRLLASASDDGMIKIWELAN 279
+ + +A+ D +K+W+ +
Sbjct: 203 -NGKYILAATLDNTLKLWDYSK 223
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-35
Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-EGHENEVKSVSWNASGT 60
H+ V + ++ G L+ ++S+D IW+ G +C+ TL + V V ++ +G
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD---VLFSCSYDNTIK 117
+ D ++ +W+ G +C+ GH + + + ++ + S S DN +
Sbjct: 206 YILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS--DDLTIKIWGAD 173
+W + VQ + GH+ + + + + + + S + +D TIK+W +D
Sbjct: 263 IW-----NLQTKEIVQKL----QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 5e-56
Identities = 75/296 (25%), Positives = 114/296 (38%), Gaps = 44/296 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASG 59
H + GK LAT S D T I+E G ++ + TL GHE V V W G
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 70 TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-------------AKGDKLVSCSDD 164
V + + I + H+ + + S+ + K V+ D
Sbjct: 129 VV---EFKENGTTSPIII----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSV 220
+KIW + ++ T+ G H + V WS +AS + D +
Sbjct: 182 NLVKIWKYN-------SDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIW 275
+ D GP K LLK+EK + WS G +LA + D + +W
Sbjct: 234 IIW---TQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSG--NVLALSGGDNKVTLW 283
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-42
Identities = 59/286 (20%), Positives = 93/286 (32%), Gaps = 55/286 (19%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--- 56
H+ +V S W+P G LL AS D + E ++ H V S SW
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159
Query: 57 ----------ASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMD 105
T G D V IW+ + + S L+GH+ V+ V W PT+
Sbjct: 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219
Query: 106 V---LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+ L S S D T +W D++ +T+ + +W S++ G+ L
Sbjct: 220 LRSYLASVSQDRTCIIW---TQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSG 275
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQF 222
D + +W ++ VH SG + +
Sbjct: 276 GDNKVTLWKENLEG-------------------KWEPAGEVHQGG---GGSGGGGATSK- 312
Query: 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASAS 267
DGP + + + D ERR AS +
Sbjct: 313 -------EFDGPC-QNEIDLLFSECNDEIDNAKLIMKERRFTASYT 350
|
| >3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-40
Identities = 56/263 (21%), Positives = 88/263 (33%), Gaps = 43/263 (16%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
V H + + G LATC DK++ I+EV + + L GH V
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWR 60
Query: 98 VQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NA 153
V W +L SCSYD + +W ++ W + HS+++ ++ + +
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIW---KEENGRWSQIAVH----AVHSASVNSVQWAPHE 113
Query: 154 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---- 209
G L+ S D + + + I H + S W+
Sbjct: 114 YGPLLLVASSDGKVSVVEFK-------EN--GTTSPIIIDA-HAIGVNSASWAPATIEED 163
Query: 210 ----------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-- 257
+G AD+ V+ + +L + H V V WSP
Sbjct: 164 GEHNGTKESRKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 258 GERRLLASASDDGMIKIWELANT 280
R LAS S D IW N
Sbjct: 219 LLRSYLASVSQDRTCIIWTQDNE 241
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 7e-56
Identities = 68/301 (22%), Positives = 98/301 (32%), Gaps = 50/301 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASG 59
H + G LAT S D + I++ G +A L GHE V V+W G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIK 117
+LA+C D+ V IW G +E GH V V W P +L S D I
Sbjct: 72 NILASCSYDRKVIIWREENG-TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-----------------AKGDKLVS 160
+ T W + N H+ A+S+ + S
Sbjct: 131 LL--TYTGEGQWEVKKIN----NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS----REG-IIASGA 215
D IK+W + W+ + H + V W+ IAS +
Sbjct: 185 GGCDNLIKLWKEEEDG--------QWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCS 235
Query: 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKI 274
D V + D S K + V V WS +LA + D + +
Sbjct: 236 QDGRVFIW-----TCDDASSNTWSPKLLHKFNDVVWHVSWSITA--NILAVSGGDNKVTL 288
Query: 275 W 275
W
Sbjct: 289 W 289
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-42
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 37/226 (16%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNAS 58
H +V S W+P G +LA S D + G +E H +VSW +
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 59 GT-----------------LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
A+ G D + +W+ +++ L+ H+ V+ V W
Sbjct: 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221
Query: 102 PTMDVLF----SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
P++ + SCS D + +W +D S+ W + + + + +W +S++ +
Sbjct: 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-SPKLL----HKFNDVVWHVSWSITANI 276
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203
L D + +W + W + ++ SV
Sbjct: 277 LAVSGGDNKVTLWKESVDG--------QWVCISDVNKGQGSVSASV 314
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 8e-39
Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 48/263 (18%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
HE+ + + GT LATC D+SV I++V G + ++ L+GH V V W
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWA 66
Query: 102 PTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDK 157
M +L SCSYD + +W ++ W GH S++ ++ + + G
Sbjct: 67 HPMYGNILASCSYDRKVIIW---REENGTWEKSHEH----AGHDSSVNSVCWAPHDYGLI 119
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-------- 209
L S D I + G W + H +V W+
Sbjct: 120 LACGSSDGAISLLTY--------TGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDH 170
Query: 210 ----------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-- 257
ASG D+ ++ + + +K +K +AH V V W+P
Sbjct: 171 PSGQKPNYIKRFASGGCDNLIKLW-----KEEEDGQWK-EEQKLEAHSDWVRDVAWAPSI 224
Query: 258 -GERRLLASASDDGMIKIWELAN 279
+AS S DG + IW +
Sbjct: 225 GLPTSTIASCSQDGRVFIWTCDD 247
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-29
Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 44/217 (20%)
Query: 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143
+V H + Q L +CS D ++K++ D + + + GH
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIF---DVRNGGQILIADLR----GHE 57
Query: 144 STIWALSF--NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201
+W +++ G+ L SCS D + IW R ++G +W +G HD ++
Sbjct: 58 GPVWQVAWAHPMYGNILASCSYDRKVIIW-----REENG----TWEKSHEHAG-HDSSVN 107
Query: 202 SVHWS--REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP- 257
SV W+ G I+A G++D ++ G + K AH + N+V W+P
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLT------YTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 258 ---------------GERRLLASASDDGMIKIWELAN 279
+ AS D +IK+W+
Sbjct: 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE 198
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-18
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 132 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191
V I+ + H I + G +L +CS D ++KI+ +G +
Sbjct: 2 VSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-----NG----GQILIAD 52
Query: 192 ISGYHDRTIFSVHWS--REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM 248
+ G H+ ++ V W+ G I+AS + D V + +G K + HD
Sbjct: 53 LRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIW-----REENGTWEK--SHEHAGHDS 104
Query: 249 DVNSVQWSPGER-RLLASASDDGMIKIWELAN 279
VNSV W+P + +LA S DG I +
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 4e-55
Identities = 79/297 (26%), Positives = 128/297 (43%), Gaps = 57/297 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT +V+ ++ SGKLLA+ S D T +W D +EC+ T+ GH++ V SVS +G
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLW-DFQ-GFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + RDK++ +WEV G CV GH + V+MV+ + ++ SCS D T++VW
Sbjct: 207 IVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW-- 261
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSF--------------------NAKGDKLVSC 161
C + H + +S+ G L+S
Sbjct: 262 ---VVATKECKAELR----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220
S D TIK+W ++ L T+ G HD + V + G I S A D ++
Sbjct: 315 SRDKTIKMWDV-----------STGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + D + +K AH+ V S+ + + + S D +K+WE
Sbjct: 363 RVW-----DYKNKR----CMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC 409
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 5e-55
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 57/299 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V + P ++ +AS DAT +W+ G + TL+GH + V+ +S++ SG L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKL 164
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LA+C D ++ +W+ FEC+ + GH +V V P D + S S D TIK+W
Sbjct: 165 LASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-- 219
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ +CV+T + GH + + N G + SCS+D T+++W
Sbjct: 220 ---EVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSNDQTVRVWVV--------- 263
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG---------------------IIASGAADDSV 220
A+ + H + + W+ E + SG+ D ++
Sbjct: 264 --ATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ + D+ G M L HD V V + G + + S +DD +++W+ N
Sbjct: 321 KMW-----DVSTG----MCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKN 369
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 6e-43
Identities = 60/282 (21%), Positives = 111/282 (39%), Gaps = 56/282 (19%)
Query: 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77
W L GH + V V ++ +++ + D ++ +W+
Sbjct: 82 GGPLGQKRDPKEWIPRPP---EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
Query: 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137
G + L+GH V+ + + + +L SCS D TIK+W D + C++T+
Sbjct: 139 TG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-----DFQGFECIRTM-- 188
Query: 138 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197
+GH + ++S GD +VS S D TIK+W ++ + + T +G H
Sbjct: 189 --HGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--EV---------QTGYCVKTFTG-HR 234
Query: 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
+ V +++G +IAS + D +V+ + + L + H V + W+
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVW-----VVATKECKAEL----REHRHVVECISWA 285
Query: 257 PGER-------------------RLLASASDDGMIKIWELAN 279
P L S S D IK+W+++
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 26/130 (20%)
Query: 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-I 210
+ K W +SG H + V + +
Sbjct: 76 KEEFTSGGPLGQKRDPKEW------------IPRPPEKYALSG-HRSPVTRVIFHPVFSV 122
Query: 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDD 269
+ S + D +++ + D G + L K H V + + G +LLAS S D
Sbjct: 123 MVSASEDATIKVW-----DYETGDFERTL----KGHTDSVQDISFDHSG--KLLASCSAD 171
Query: 270 GMIKIWELAN 279
IK+W+
Sbjct: 172 MTIKLWDFQG 181
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-54
Identities = 51/282 (18%), Positives = 100/282 (35%), Gaps = 26/282 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ AW+ +A + I+E G + V L+ H +V V W
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 66
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ TCG D++ ++W + ++ V+ + + V+W P S I + +
Sbjct: 67 IVTCGTDRNAYVWTLKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
E ++D W C ST+ +L ++ L + S D +I+ A I ++
Sbjct: 126 E-QENDWWVCKHIK----KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 182 GYASW-------RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233
W + S + V +S G +A + D +V D
Sbjct: 181 APTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLA-----DADKK 234
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+ L + + + +V + E L+A+ D ++
Sbjct: 235 MAVATL----ASETLPLLAVTFIT-ESSLVAAGHDC-FPVLF 270
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 6e-47
Identities = 41/289 (14%), Positives = 82/289 (28%), Gaps = 33/289 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V W+P + T D +W G ++ + + V W +
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 62 LATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
A + + I N+ + C + + V + WHP +L + S D +++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 121 AEDTDSDNWHCVQTISESN---------NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
A + + + + + F+A G ++ S D T+ +
Sbjct: 171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230
A + T++ + +V + E ++A+G V F
Sbjct: 231 A-----DKK------MAVATLAS-ETLPLLAVTFITESSLVAAGHDCFPVLFTY------ 272
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D + K+ R D A
Sbjct: 273 -DSAAGKLSFGG---RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 8e-44
Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 51/298 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNASG 59
R R W+P+ K A S I + + C + + V S+ W+ +
Sbjct: 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154
Query: 60 TLLATCGRDKSVWIWEVMPGNEF---------------ECVSVLQGHAQDVKMVQWHPTM 104
LLA D I+ E + V V +
Sbjct: 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164
+ S+D+T+ + D+D V T++ + + A++F + + + D
Sbjct: 215 SRVAWVSHDSTVCLA-----DADKKMAVATLA----SETLPLLAVTFITESSLVAAGHDC 265
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224
++ D S + G D S D
Sbjct: 266 -FPVLFTYD-----------SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA---- 309
Query: 225 ESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL---LASASDDGMIKIWELAN 279
+ L + H V+ + G + + DG + IW++ +
Sbjct: 310 ---SSEGSAAAGAGL---DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-39
Identities = 46/250 (18%), Positives = 81/250 (32%), Gaps = 29/250 (11%)
Query: 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW 100
A + +WN T +A C + V I+E GN++ V L+ H V V W
Sbjct: 2 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDW 60
Query: 101 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160
P + + +C D VW W I + + + K
Sbjct: 61 APDSNRIVTCGTDRNAYVW---TLKGRTWKPTLVI----LRINRAARCVRWAPNEKKFAV 113
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219
S I I + W T+ S+ W ++A+G+ D
Sbjct: 114 GSGSRVISICYFE-------QENDWWVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 220 VQFFVESKDDLIDGPSYKM---------LLKKEKAHDMDVNSVQWSP-GERRLLASASDD 269
+ F ++ + P+ L+ + + V+ V +S G R +A S D
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR--VAWVSHD 223
Query: 270 GMIKIWELAN 279
+ + +
Sbjct: 224 STVCLADADK 233
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-54
Identities = 50/283 (17%), Positives = 110/283 (38%), Gaps = 41/283 (14%)
Query: 2 HTRTVRSCAWSPSGK----LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 57
H + S AW + K + T S D +W+ + +LEGH+ V SV +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
+ + A+ D + +W++ G + + + D + + P L + ++ +
Sbjct: 91 TLPIAASSSLDAHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
++ ++ ++ + I +++++ G L S + D I I+
Sbjct: 148 IF-----GVESGKKEYSL----DTRGKFILSIAYSPDGKYLASGAIDGIINIFDI----- 193
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236
A+ + L T+ G H I S+ +S + ++ + + D ++ + D+
Sbjct: 194 ------ATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIY-----DVQHAN-- 239
Query: 237 KMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
L H V +V + P S+S D +K+W++
Sbjct: 240 --LAGTLSGHASWVLNVAFCPDD--THFVSSSSDKSVKVWDVG 278
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-53
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 37/277 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V S S + + A++S DA +W+ G + + +++ + +++++
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
LAT V I+ V G + L + + + + P L S + D I ++
Sbjct: 137 LATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-- 191
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D + T+ GH+ I +L+F+ LV+ SDD IKI+
Sbjct: 192 ---DIATGKLLHTLE----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV--------- 235
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
T+SG H + +V + + S ++D SV+ + D+
Sbjct: 236 --QHANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVW-----DVGTRTCVHTF- 286
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
H V V+++ + S DD I I++
Sbjct: 287 ---FDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 4e-47
Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 39/267 (14%)
Query: 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW----NASGTLLATCGRDKSVWI 73
+S + + G + H++ + SV+W + + T D V +
Sbjct: 5 HHHSSRENLYFQGTNQYG--ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKV 62
Query: 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ 133
W+ + L+GH V V T+ + S S D I++W D +N ++
Sbjct: 63 WKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW-----DLENGKQIK 116
Query: 134 TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193
+I + W L+F+ L + + + I+G +SG + ++
Sbjct: 117 SI----DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV-----ESG------KKEYSLD 161
Query: 194 GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252
+ I S+ +S +G +ASGA D + F D+ G LL + H M + S
Sbjct: 162 T-RGKFILSIAYSPDGKYLASGAIDGIINIF-----DIATG----KLLHTLEGHAMPIRS 211
Query: 253 VQWSPGERRLLASASDDGMIKIWELAN 279
+ +SP + +LL +ASDDG IKI+++ +
Sbjct: 212 LTFSP-DSQLLVTASDDGYIKIYDVQH 237
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 2e-42
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + S A+SP GK LA+ + D I++ G + + TLEGH ++S++++ L
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQL 220
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L T D + I++V L GHA V V + P S S D ++KVW
Sbjct: 221 LVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW-- 275
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
D CV T H +W + +N G K+VS DD I I+ I
Sbjct: 276 ---DVGTRTCVHTF----FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 5e-54
Identities = 75/297 (25%), Positives = 115/297 (38%), Gaps = 44/297 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
H + GK LAT S D T I+E G ++ + TL GHE V V W G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIK 117
T+LA+C D V IW+ G + ++V H+ V VQW P +L S D +
Sbjct: 68 TILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-------------AKGDKLVSCSDD 164
V + + I + H+ + + S+ + K V+ D
Sbjct: 127 VV---EFKENGTTSPIII----DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSV 220
+KIW + ++ T+ G H + V WS +AS + D +
Sbjct: 180 NLVKIWKYN-------SDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWE 276
+ D GP K LLK+EK + WS G +LA + D + +W+
Sbjct: 232 IIW---TQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSG--NVLALSGGDNKVTLWK 282
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-39
Identities = 56/256 (21%), Positives = 88/256 (34%), Gaps = 43/256 (16%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
V H + + G LATC DK++ I+EV + + L GH V V
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVD 60
Query: 100 WHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKG 155
W +L SCSYD + +W ++ W + HS+++ ++ + + G
Sbjct: 61 WAHPKFGTILASCSYDGKVLIW---KEENGRWSQIAVH----AVHSASVNSVQWAPHEYG 113
Query: 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI----- 210
L+ S D + + + I H + S W+ I
Sbjct: 114 PLLLVASSDGKVSVVEFK-------EN--GTTSPIIIDA-HAIGVNSASWAPATIEEDGE 163
Query: 211 ---------IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP--GE 259
+G AD+ V+ + +L + H V V WSP
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW-----KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218
Query: 260 RRLLASASDDGMIKIW 275
R LAS S D IW
Sbjct: 219 RSYLASVSQDRTCIIW 234
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 3e-27
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 43/213 (20%)
Query: 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144
V + H + + L +CS D TIK++ + + + + T++ GH
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIF---EVEGETHKLIDTLT----GHEG 54
Query: 145 TIW--ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS 202
+W + G L SCS D + IW + ++G W + + H ++ S
Sbjct: 55 PVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENG----RWSQIAVHAV-HSASVNS 104
Query: 203 VHWS--REG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE-KAHDMDVNSVQWSPG 258
V W+ G ++ ++D V +++ AH + VNS W+P
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVS--------VVEFKENGTTSPIIIDAHAIGVNSASWAPA 156
Query: 259 ER------------RLLASASDDGMIKIWELAN 279
R + D ++KIW+ +
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 7e-21
Identities = 44/282 (15%), Positives = 79/282 (28%), Gaps = 29/282 (10%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATL---EGHENEVKSVSW 55
H+ VR AWSP+ LA+ S D T IW TL E + + SW
Sbjct: 203 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
+ SG +LA G D V +W+ ++E + S T
Sbjct: 263 SLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGG--------------SGGGGAT 308
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
K + D + + + N + + + + T +
Sbjct: 309 SKEF-----DGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDI 363
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPS 235
+SG D + I A + + L
Sbjct: 364 VGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEAR---KSNPYPQISESSLLFKDAL 420
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
M + ++S+ + P + +D + + +
Sbjct: 421 DYMEKTSSDYNLWKLSSILFDP-VSYPYKTDNDQVKMALLKK 461
|
| >3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 239 LLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELANT 280
++ AH+ ++ G + LA+ S D IKI+E+
Sbjct: 1 MVVIANAHNELIHDAVLDYYG--KRLATCSSDKTIKIFEVEGE 41
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-53
Identities = 59/281 (20%), Positives = 113/281 (40%), Gaps = 28/281 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V +S G+ +A+ D T +++ G E + ++ HE+EV ++++ +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVW 119
+ATC DK V IW+ G + V H++ V + +L + S D +K+W
Sbjct: 672 IATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQ 178
D + C T+ GH++++ F+ + L SCS D T+++W +
Sbjct: 729 -----DLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237
S + + + + WS +G I A + V L D +
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVL--------LFDIHTSG 830
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+L + H + +SP + A +++W +
Sbjct: 831 LLAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVELWNID 870
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 5e-50
Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 32/278 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + VR ++ GK L ++S D+ +W G + V L+ H+ VK L
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--DYV-FLQAHQETVKDFRLLQDSRL 1058
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ D +V +W V+ G H V S S D T K+W
Sbjct: 1059 -LSWSFDGTVKVWNVITG---RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW-- 1112
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D + + GH+ + +F+ G L + D+ I+IW +++ Q
Sbjct: 1113 ---SFDLLSPLHELK----GHNGCVRCSAFSLDGILLATGDDNGEIRIW--NVSDGQLLH 1163
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
A + H + V +S + + S ++++ ++ G S +
Sbjct: 1164 SCAPISVEEGTAT-HGGWVTDVCFSPDSKTLVSA--GGYLKWW-----NVATGDSSQTF- 1214
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ ++ + SP R + + G++ I ++
Sbjct: 1215 ---YTNGTNLKKIHVSPDFRTY-VTVDNLGILYILQVL 1248
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-49
Identities = 63/280 (22%), Positives = 107/280 (38%), Gaps = 34/280 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
V C SP + +A D I E ++ GH+ V+ + + A G
Sbjct: 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGVGHKKAVRHIQFTADGKT 1017
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWW 120
L + D + +W G + V LQ H + VK + D L S S+D T+KVW
Sbjct: 1018 LISSSEDSVIQVWNWQTG---DYV-FLQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVW- 1070
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
+ + + H T+ + + ++ K S S D T KIW D
Sbjct: 1071 ----NVITGRIERDFT----CHQGTVLSCAISSDATKFSSTSADKTAKIWSFD------- 1115
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239
L + G H+ + +S +G ++A+G + ++ + S L+ + +
Sbjct: 1116 ----LLSPLHELKG-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ H V V +SP + L S G +K W +A
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTL---VSAGGYLKWWNVAT 1207
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 2e-48
Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 42/279 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + + ++ + + E +V +
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRGLQLI-----AGKTGQIDYLPEAQVSCCCLSPHLEY 975
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A D ++ I E+ S GH + V+ +Q+ L S S D+ I+VW
Sbjct: 976 VAFGDEDGAIKIIELPNN---RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW-- 1030
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ V H T+ +L+S S D T+K+W
Sbjct: 1031 ---NWQTGDYVFL-----QAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNV--------- 1072
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ R + H T+ S S + +S +AD + + + L
Sbjct: 1073 --ITGRIERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIW-----SFDLL----SPL 1120
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ K H+ V +S LA+ D+G I+IW +++
Sbjct: 1121 HELKGHNGCVRCSAFSLDGIL-LATGDDNGEIRIWNVSD 1158
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 3e-47
Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 42/278 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V +SP G TAS D T +W + + V + + T+
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVW-ETKK---VCKNSAIVLKQEIDVVFQENETM 936
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + + + G + V P ++ + D IK+
Sbjct: 937 VLAVDNIRGLQLIAGKTGQ------IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII-- 988
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ N + GH + + F A G L+S S+D I++W
Sbjct: 989 ---ELPNNRVFSSG----VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ 1041
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
H T+ ++ + S + D +V+ + ++I G + +
Sbjct: 1042 A-------------HQETVKDFRLLQDSRLLSWSFDGTVKVW-----NVITG----RIER 1079
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H V S S + +S S D KIW
Sbjct: 1080 DFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDL 1116
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-44
Identities = 50/291 (17%), Positives = 96/291 (32%), Gaps = 48/291 (16%)
Query: 2 HTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
H+ V C ++ LLAT S D +W+ EC T+ GH N V ++
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--ECRNTMFGHTNSVNHCRFSPDD 755
Query: 60 TLLATCGRDKSVWIWEVMPGNE----------FECVSVLQGHAQDVKMVQWHPTMDVLFS 109
LLA+C D ++ +W+V NE + VK W D +
Sbjct: 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815
Query: 110 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
+ + + ++ + ++E + GH STI F+ V +++
Sbjct: 816 AAKNKVL-LFDIHTS--------GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 170 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD 228
W D S + G H + V +S +G + + D +++ +
Sbjct: 867 WNID-----------SRLKVADCRG-HLSWVHGVMFSPDGSSFLTASDDQTIRVW----- 909
Query: 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ K V + E + + + +++
Sbjct: 910 ETKKV------CKNSAIVLKQEIDVVFQENETM-VLAVDNIRGLQLIAGKT 953
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 2e-40
Identities = 45/281 (16%), Positives = 100/281 (35%), Gaps = 40/281 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+++ +G+L T + H + V ++ G
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNL--------SRLVVRPHTDAVYHACFSQDGQR 629
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A+CG DK++ +++ G E + ++ H +V + + +CS D +K+W
Sbjct: 630 IASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW-- 684
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK--LVSCSDDLTIKIWGADITRMQS 179
DS V T HS + F K + L + S+D +K+W
Sbjct: 685 ---DSATGKLVHTYD----EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL------- 730
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV----ESKDDLIDGP 234
T+ G H ++ +S + ++AS +AD +++ + + +
Sbjct: 731 ----NQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+ + ++ V WS + + A+ + ++
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDK-IIVAAKNKVLLFD 825
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 47/270 (17%), Positives = 99/270 (36%), Gaps = 48/270 (17%)
Query: 12 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSV 71
S +G LL F + E + + ++++ +G L K++
Sbjct: 549 SLNGHLLGRQPFPNIVQLG-----LCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTI 603
Query: 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC 131
V++ H V + + SC D T++V+ ++
Sbjct: 604 KNL---------SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF-----KAETGEK 649
Query: 132 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191
+ I H + +F++ + +CS D +KIW + A+ + + T
Sbjct: 650 LLDI----KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS-----------ATGKLVHT 694
Query: 192 ISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM 248
H + H++ + ++A+G+ D ++ + DL + H
Sbjct: 695 YDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLW-----DLNQKECRNTM----FGHTN 744
Query: 249 DVNSVQWSPGERRLLASASDDGMIKIWELA 278
VN ++SP + LAS S DG +++W++
Sbjct: 745 SVNHCRFSPDDEL-LASCSADGTLRLWDVR 773
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-51
Identities = 62/284 (21%), Positives = 110/284 (38%), Gaps = 43/284 (15%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE----CVATLEGHENEVKSVSWN 56
M V +CA++PSG +A D ++ E ++ H N + + S+
Sbjct: 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDN 114
S + T D + +W+V G + + GH DV + P+ S D
Sbjct: 164 NSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
VW D + CVQ H S + ++ + GD S SDD T +++ D+
Sbjct: 221 KAMVW-----DMRSGQCVQAFE----THESDVNSVRYYPSGDAFASGSDDATCRLY--DL 269
Query: 175 TRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID 232
+ R + S SV +S G ++ +G D ++ + D++
Sbjct: 270 ---------RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW-----DVLK 315
Query: 233 GPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIW 275
G +L H+ V++++ SP G S S D +++W
Sbjct: 316 GSRVSIL----FGHENRVSTLRVSPDG--TAFCSGSWDHTLRVW 353
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-49
Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 39/284 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V W + + ++S D +W+ + V + ++ SG
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCA 120
Query: 62 LATCGRDKSVWIWEVMPGNEF---ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
+A G D ++ + + H + + + + + S D T +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADITR 176
W D ++ +Q+ +GH + + L + G+ VS D +W D+
Sbjct: 181 W-----DVESGQLLQSF----HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW--DM-- 227
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
+SG + + H+ + SV + G ASG+ D + + + DL
Sbjct: 228 -RSG------QCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLY-----DLRADRE 274
Query: 236 YKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ +++ +SV +S G RLL + +D I +W++
Sbjct: 275 VAIY--SKESIIFGASSVDFSLSG--RLLFAGYNDYTINVWDVL 314
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-43
Identities = 56/287 (19%), Positives = 104/287 (36%), Gaps = 38/287 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-------DYECVATLEGHENEVKSVS 54
+++S A S GKL + + + + TL+GH N+V +
Sbjct: 12 TLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMD 71
Query: 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
W + + +D V +W+ N + V + P+ + DN
Sbjct: 72 WCKDKRRIVSSSQDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
V+ D + +S H++ + A SF ++++ S D T +W
Sbjct: 129 KCSVY---PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-- 183
Query: 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REG-IIASGAADDSVQFFVESKDDLI 231
+SG + L + G H + + + G SG D + D+
Sbjct: 184 ---ESG------QLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVW-----DMR 228
Query: 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
G ++ + H+ DVNSV++ P AS SDD ++++L
Sbjct: 229 SG----QCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLR 270
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-35
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 18/174 (10%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
H V +P +G + D +W+ G +CV E HE++V SV + SG
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETHESDVNSVRYYPSG 252
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGH--AQDVKMVQWHPTMDVLFSCSYDNTIK 117
A+ D + ++++ V++ V + + +LF+ D TI
Sbjct: 253 DAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
VW D V + GH + + L + G S S D T+++W
Sbjct: 310 VW-----DVLKGSRVSILF----GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-32
Identities = 32/250 (12%), Positives = 71/250 (28%), Gaps = 37/250 (14%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIW-----------EVMPGNEFECVSVLQG 90
+G S + L ++ + E + + L+G
Sbjct: 3 ATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG 62
Query: 91 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150
H V + W + S S D + VW DS + ++ + + A +
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVW-----DSFTTNKEHAVT----MPCTWVMACA 113
Query: 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 209
+ G + D ++ +++ H + + ++
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLT-----FDKNENMAAKKKSVAM-HTNYLSACSFTNSDM 167
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASD 268
I + + D + + D+ G + H DV + +P E S
Sbjct: 168 QILTASGDGTCALW-----DVESGQLLQSF----HGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 269 DGMIKIWELA 278
D +W++
Sbjct: 219 DKKAMVWDMR 228
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-14
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 17/144 (11%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIW---GADITRMQSGDGYASWRHLCTISGYHD 197
G S ++ + L ++ K+ + G + T+ G H
Sbjct: 6 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKG-HG 64
Query: 198 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
+ + W ++ I S + D V + D V + ++
Sbjct: 65 NKVLCMDWCKDKRRIVSSSQDGKVIVW-----DSFTT----NKEHAVTMPCTWVMACAYA 115
Query: 257 P-GERRLLASASDDGMIKIWELAN 279
P G +A D ++ L
Sbjct: 116 PSG--CAIACGGLDNKCSVYPLTF 137
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-07
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 196 HDRTIFSVHWSREG------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
E + A V+ ++ G + K H
Sbjct: 7 LHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 250 VNSVQWSPGERRLLASASDDGMIKIWELANT 280
V + W ++R + S+S DG + +W+ T
Sbjct: 67 VLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT 96
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 3e-51
Identities = 57/283 (20%), Positives = 104/283 (36%), Gaps = 39/283 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
VR+ + + S D ++ G E V E H + ++S++ + +
Sbjct: 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW 120
+ + D +V +W + +GH V V ++P S D T+KVW
Sbjct: 112 VLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW- 168
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK--LVSCSDDLTIKIWGADITRMQ 178
T++ G + + + DK +++ SDDLTIKIW Q
Sbjct: 169 ----SLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQ 216
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237
+ + T+ G H + + II SG+ D +++ + + +YK
Sbjct: 217 TK------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLK--------IWNSSTYK 261
Query: 238 MLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
+ K + P G + +AS D+G + L N
Sbjct: 262 -VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-50
Identities = 53/281 (18%), Positives = 105/281 (37%), Gaps = 38/281 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ V+ + P+ + T + IW V +++ E V++ + A
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNW 69
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ D + ++ N E V + H ++ + HPT + S S D T+K+W
Sbjct: 70 IIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-- 124
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSG 180
+ ++ NW QT GH + ++FN K S D T+K+W
Sbjct: 125 -NWEN-NWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESKDDLIDGPSYK 237
T++ +R + V + + + + D +++ + D
Sbjct: 171 ---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVA 222
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
L + H +V+ + P ++ S S+DG +KIW +
Sbjct: 223 TL----EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSS 258
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 34/245 (13%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
+ T + VK + ++ + + T V IW V +Q V+
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRA 60
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
++ + + S D I+V+ + + V H I +++ +
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVF-----NYNTGEKVVDF----EAHPDYIRSIAVHPTKPY 111
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-REG-IIASGA 215
++S SDDLT+K+W ++ W T G H+ + V ++ ++ ASG
Sbjct: 112 VLSGSDDLTVKLWNW-----ENN-----WALEQTFEG-HEHFVMCVAFNPKDPSTFASGC 160
Query: 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKI 274
D +V+ + L L + VN V + P ++ + +ASDD IKI
Sbjct: 161 LDRTVKVW-----SLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 275 WELAN 279
W+
Sbjct: 213 WDYQT 217
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-32
Identities = 47/282 (16%), Positives = 77/282 (27%), Gaps = 43/282 (15%)
Query: 2 HTRTVRSCAWS--PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
R V + P + TAS D T IW+ CVATLEGH + V ++ +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTL 240
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKV 118
++ + D ++ IW + L + + HPT + +DN V
Sbjct: 241 PIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
D +G + + F A D + + ++
Sbjct: 298 LSLG-NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKEL---- 352
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 238
G D S+ S G + D +
Sbjct: 353 ---------------GSVDVFPQSLAHSPNGRFVTVVGDGEYVIY--------------T 383
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
L W P A + G IK ++
Sbjct: 384 ALAWRNKAFGKCQDFVWGPDSNS-YALIDETGQIKYYKNFKE 424
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 30/198 (15%)
Query: 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141
+ + VK + +HPT + + Y +++W + + V++I
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIW-----NYETQVEVRSIQ----V 53
Query: 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201
+ + A F A+ + ++ SDD I+++ Y + + H I
Sbjct: 54 TETPVRAGKFIARKNWIIVGSDDFRIRVF-----------NYNTGEKVVDFEA-HPDYIR 101
Query: 202 SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260
S+ + SG+ D +V+ L + + L + + H+ V V ++P +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVK--------LWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 261 RLLASASDDGMIKIWELA 278
AS D +K+W L
Sbjct: 154 STFASGCLDRTVKVWSLG 171
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 7e-18
Identities = 34/278 (12%), Positives = 73/278 (26%), Gaps = 55/278 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
A P+G+ AS FD + +G D E +L+ + W+
Sbjct: 269 GLERSWCIATHPTGRKNYIASGFDNGFTVL-SLGND-EPTLSLDPV----GKLVWSGGKN 322
Query: 61 LLATCGRDKSVWIWEVMPGNE--FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
A+ + E + +E L + + P + D +
Sbjct: 323 AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVI 381
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
+ A N + + + IK
Sbjct: 382 YTALAWR--------------NKAFGKCQDFVWGPDSNSYALIDETGQIKY--------- 418
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 238
+++ ++ + ++ G + +D V FF D + +
Sbjct: 419 -------YKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFF--------DWDNGTL 463
Query: 239 LLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIW 275
+ + D++ V WS G L+ + +
Sbjct: 464 V----RRIDVNAKDVIWSDNG--ELVMIVNTNSNGDEA 495
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 3e-16
Identities = 36/254 (14%), Positives = 67/254 (26%), Gaps = 43/254 (16%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNA 57
+ V WS A+ F A E+V D L + +S++ +
Sbjct: 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366
Query: 58 SGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHA---------------------QD 94
+G + G + V +C + G
Sbjct: 367 NGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT 426
Query: 95 VKMVQWHPTMDVLFS-----CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149
V H +D LFS D + + D DN V+ I + ++ +
Sbjct: 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFF-----DWDNGTLVRRI----DVNAKDV--- 474
Query: 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209
++ G+ ++ + + + + F V +
Sbjct: 475 IWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSE 534
Query: 210 IIASGAADDSVQFF 223
I SG V F
Sbjct: 535 SITSGKWVGDVFIF 548
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 26/184 (14%)
Query: 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 64
+ SG LL S D ++ G V ++ + K V W+ +G L+
Sbjct: 432 MHSAIDRLFSGALLGVKS-DGFVYFFDWDNG--TLVRRIDVN---AKDVIWSDNGELVMI 485
Query: 65 CGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123
+ + + + DVL+ S T W
Sbjct: 486 VNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKW---V 542
Query: 124 TD-----SDNWHCVQTISESNNGHSSTI-------WALSFNAKGDKLVSCSDDLTIKIWG 171
D + ++ G + + + L + A+ +K+ ++ + +
Sbjct: 543 GDVFIFTTATNR----LNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYE 598
Query: 172 ADIT 175
+
Sbjct: 599 ISLE 602
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 5e-51
Identities = 57/280 (20%), Positives = 99/280 (35%), Gaps = 36/280 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + W +LL +AS D IW+ V + + V + ++ SG
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 62 LATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+A G D I+ + L GH + ++ ++ + S D T +W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALW- 169
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D + T GH+ + +LS VS + D + K+W D+
Sbjct: 170 ----DIETGQQTTTF----TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DV------ 213
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239
T +G H+ I ++ + G A+G+ D + + F DL
Sbjct: 214 ---REGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLF-----DLRADQELMTY 264
Query: 240 LKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ SV +S G RLL + DD +W+
Sbjct: 265 --SHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDAL 300
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-49
Identities = 62/279 (22%), Positives = 110/279 (39%), Gaps = 38/279 (13%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE--CVATLEGHENEVKSVSWNAS 58
+ + V +CA++PSG +A D I+ + L GH + +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
+ T D + +W++ G + + GH DV + P + S + D + K+
Sbjct: 155 NQ-IVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D C QT + GH S I A+ F G+ + SDD T +++ D+
Sbjct: 211 W-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLF--DL---- 255
Query: 179 SGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236
+ + L T S I SV +S+ G ++ +G D + + D +
Sbjct: 256 -----RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-----DALKADRA 305
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+L HD V+ + + + +A+ S D +KIW
Sbjct: 306 GVL----AGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 2e-43
Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 39/278 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
R R + + + D I TL GH ++ ++ W L
Sbjct: 17 QIRDARKACADATLSQIT-NNIDPVGRIQ------MRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + +D + IW+ N V + + V + P+ + + DN ++
Sbjct: 70 LLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ T N + ++ GH+ + F ++V+ S D T +W
Sbjct: 127 K-TREGNVRVSRELA----GHTGYLSCCRFLDDN-QIVTSSGDTTCALWDI--------- 171
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ + T +G H + S+ + + + SGA D S + + D+ +G +
Sbjct: 172 --ETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLW-----DVREGMCRQTF- 222
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
H+ D+N++ + P A+ SDD ++++L
Sbjct: 223 ---TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR 256
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 35/239 (14%)
Query: 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW 100
L+ + + A TL V + L+GH + + W
Sbjct: 12 EQLKNQIRDARKAC--ADATLSQITNNIDPVGRIQ------MRTRRTLRGHLAKIYAMHW 63
Query: 101 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160
+L S S D + +W DS + V I SS + ++ G+ +
Sbjct: 64 GTDSRLLLSASQDGKLIIW-----DSYTTNKVHAIP----LRSSWVMTCAYAPSGNYVAC 114
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 220
D I+ + R ++G H + + + I + + D +
Sbjct: 115 GGLDNICSIYNLK-------TREGNVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ D+ G H DV S+ +P R S + D K+W++
Sbjct: 167 ALW-----DIETGQQTTTF----TGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVRE 215
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ H + ++ W + RLL SAS DG + IW+ T
Sbjct: 52 RGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT 87
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 5e-51
Identities = 57/291 (19%), Positives = 95/291 (32%), Gaps = 51/291 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
T V AWS G + T + +W G + L H + SV WN GT
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG---ALLNVLNFHRAPIVSVKWNKDGTH 163
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-------HPTMDVLFS----- 109
+ + + +W V+ G + + + +DV +
Sbjct: 164 IISMDVENVTILWNVISG---TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220
Query: 110 --CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167
I V+ + GH I L FN L+S SDD T+
Sbjct: 221 VIPGPKGAIFVY-----QITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTL 271
Query: 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227
+IW +G G H ++I S W + + S + D SV+ +
Sbjct: 272 RIW-----HGGNG------NSQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLW---- 315
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
L LL + + + + S + + A A DG + +++L
Sbjct: 316 -SLKQN----TLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLK 360
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 3e-45
Identities = 46/290 (15%), Positives = 93/290 (32%), Gaps = 52/290 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE------------ 49
H + S W+ G + + + T +W + G + E E
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--TVMQHFELKETGGSSINAENHSGD 205
Query: 50 ---VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV 106
V W G +++++++ L GH + +++++ T +
Sbjct: 206 GSLGVDVEWVDDDKF-VIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKL 261
Query: 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166
L S S D T+++W N + GHS +I + S+ K++SCS D +
Sbjct: 262 LLSASDDGTLRIW-----HGGNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMDGS 311
Query: 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225
+++W L IF+ S++G A D V +
Sbjct: 312 VRLWSL-----------KQNTLLALSIV-DGVPIFAGRISQDGQKYAVAFMDGQVNVY-- 357
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
D + + + + P +S +D + +
Sbjct: 358 ------DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 5e-43
Identities = 44/308 (14%), Positives = 98/308 (31%), Gaps = 64/308 (20%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGD------------------YECVAT 42
+ S W+P +LA ++ + V D + A+
Sbjct: 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103
Query: 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102
N+V ++W+ G + T + + +W ++VL H + V+W+
Sbjct: 104 SGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK----TGALLNVLNFHRAPIVSVKWNK 159
Query: 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI-----------SESNNGHSSTIWALSF 151
+ S +N +W + + +Q +E+++G S + +
Sbjct: 160 DGTHIISMDVENVTILW-----NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214
Query: 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-I 210
K V I ++ + G H I + ++ +
Sbjct: 215 VDDD-KFVIPGPKGAIFVYQI-----------TEKTPTGKLIG-HHGPISVLEFNDTNKL 261
Query: 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270
+ S + D +++ + +G H + S W ++ + S S DG
Sbjct: 262 LLSASDDGTLRIW-----HGGNG----NSQNCFYGHSQSIVSASWVGDDK--VISCSMDG 310
Query: 271 MIKIWELA 278
+++W L
Sbjct: 311 SVRLWSLK 318
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-38
Identities = 37/300 (12%), Positives = 92/300 (30%), Gaps = 52/300 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASGT 60
+ +S D + + + + S +WN +
Sbjct: 9 DGASTVERETQEDDTNSIDSSDDLDGFVK---------ILKEIVKLDNIVSSTWNPLDES 59
Query: 61 LLATCGRDKSVWIWEVMPGNE-----------------FECVSVLQGHAQDVKMVQWHPT 103
+LA ++ + ++ ++ F + V + W
Sbjct: 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119
Query: 104 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163
+ + + + +++W + + + N H + I ++ +N G ++S
Sbjct: 120 GNSIVTGVENGELRLW---NKTG---ALLNVL----NFHRAPIVSVKWNKDGTHIISMDV 169
Query: 164 DLTIKIW----GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 219
+ +W G + + + S + SG V W + +
Sbjct: 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSG-DGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ + + + L H ++ ++++ +LL SASDDG ++IW N
Sbjct: 229 IFVY-----QITEKTPTGKL----IGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGN 278
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 14/150 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H++++ S +W K+ + S D + +W +A + + + G
Sbjct: 288 HSQSIVSASWVGDDKV-ISCSMDGSVRLWSLKQN--TLLALSIVDGVPIFAGRISQDGQK 344
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW 120
A D V ++++ N L G+ + P S D + W
Sbjct: 345 YAVAFMDGQVNVYDLKKLN--SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALS 150
+ S ++ A+
Sbjct: 403 NCAGN----KISVAYS----LQEGSVVAIP 424
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 17/155 (10%), Positives = 36/155 (23%), Gaps = 33/155 (21%)
Query: 134 TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193
+ S ++ + SDDL +
Sbjct: 1 SESNKAGEDGASTVERETQEDDTNSIDSSDDLDGFVKILK-------------------E 41
Query: 194 GYHDRTIFSVHWSREG--IIASGAADDSV-----------QFFVESKDDLIDGPSYKMLL 240
I S W+ I+A G + + + L
Sbjct: 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
V + WS + + + ++G +++W
Sbjct: 102 ASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLW 135
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 1e-50
Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 38/277 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+RSC P G L +T IW+ A L +++ + +
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+C D ++ +W++ V QGH + L++ DNT++ W
Sbjct: 156 CFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW-- 210
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D +Q +S I++L + G+ L + +++ D
Sbjct: 211 ---DLREGRQLQQH-----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-----NKPD 257
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
Y + H+ + S+ ++ G S D+ + + G
Sbjct: 258 KY-------QLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAW-----RTPYG-----AS 299
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ V S S ++ + + S D ++E+
Sbjct: 300 IFQSKESSSVLSCDISVDDKY-IVTGSGDKKATVYEV 335
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 9e-45
Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 41/282 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNAS 58
H V + S + + T +W+ + +N ++S
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
G L G ++ IW++ + L A + P V FSC D I V
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D N V+ GH+ + + G KL + D T++ W R
Sbjct: 168 W-----DLHNQTLVRQFQ----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237
IFS+ + G +A G +V+ + Y+
Sbjct: 219 QQHD-------------FTSQIFSLGYCPTGEWLAVGMESSNVEVL-----HVNKPDKYQ 260
Query: 238 MLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ H+ V S++++ G + S D ++ W
Sbjct: 261 L-----HLHESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTP 295
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-41
Identities = 42/282 (14%), Positives = 91/282 (32%), Gaps = 38/282 (13%)
Query: 1 MHTRTVRSCAWSPSGKLLATA-SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
M ++ S + G++ DA + TL H V +V+ +
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTL-NHGEVVCAVTISNPT 63
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
+ T G+ V +W++ VS ++ + P L +T+
Sbjct: 64 RHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
+W D + ++ + +AL+ + SC D I +W
Sbjct: 123 IW---DLAAPTPRIKAELT----SSAPACYALAISPDSKVCFSCCSDGNIAVWDL----- 170
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236
+ + G H + S +G + +G D++V+ + DL +G
Sbjct: 171 ------HNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSW-----DLREG--- 215
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
++ + S+ + P LA + +++ +
Sbjct: 216 --RQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVN 254
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-18
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 29/173 (16%)
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168
D I + + T+ H + A++ + + + +K
Sbjct: 27 PFPPDALIGPG-----IPRHARQINTL-----NHGEVVCAVTISNPTRHVYTGGKG-CVK 75
Query: 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227
+W +S + D I S +G + G ++ +
Sbjct: 76 VWDISHPGNKSPVSQLDCLN-------RDNYIRSCKLLPDGCTLIVGGEASTLSIW---- 124
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
DL + + + ++ SP ++ S DG I +W+L N
Sbjct: 125 -DLAAPT--PRIKAELTSSAPACYALAISPDS--KVCFSCCSDGNIAVWDLHN 172
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 5e-15
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V S ++ GK + D W G + + V S +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQS-KESSSVLSCDISVDDKY 320
Query: 62 LATCGRDKSVWIWEVM 77
+ T DK ++EV+
Sbjct: 321 IVTGSGDKKATVYEVI 336
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 4e-12
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 25/144 (17%)
Query: 141 GHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199
S ++ A G V D I R + T++ H
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------HARQINTLN--HGEV 53
Query: 200 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE-KAHDMDVNSVQWSP 257
+ +V S + +G V+ + D+ + + + + D + S + P
Sbjct: 54 VCAVTISNPTRHVYTGG-KGCVKVW-----DISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 258 -GERRLLASASDDGMIKIWELANT 280
G L + + IW+LA
Sbjct: 108 DG--CTLIVGGEASTLSIWDLAAP 129
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 2e-50
Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 34/289 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+RS +SP GK LAT + D IW+ + V L+GHE ++ S+ + SG
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDK 179
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVW 119
L + D++V IW++ G +C L V V P D + + S D ++VW
Sbjct: 180 LVSGSGDRTVRIWDLRTG---QCSLTLSIE-DGVTTVAVSPG-DGKYIAAGSLDRAVRVW 234
Query: 120 WAEDTDSDNWHCVQTISESNN---GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
DS+ V+ + N GH +++++ F G +VS S D ++K+W
Sbjct: 235 -----DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 177 MQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234
+S S T G H + SV ++ I SG+ D V F+ D G
Sbjct: 290 NKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSGN 343
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGER-----RLLASASDDGMIKIWELA 278
ML + H V SV + G + A+ S D +IW+
Sbjct: 344 PLLML----QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-41
Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 45/301 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH--------------- 46
HT V +S G+ LAT + TT ++ G VA L
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSS 119
Query: 47 ---ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT 103
+ ++SV ++ G LAT D+ + IW++ + V +LQGH QD+ + + P+
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPS 176
Query: 104 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF-NAKGDKLVSCS 162
D L S S D T+++W D C T+S + ++ G + + S
Sbjct: 177 GDKLVSGSGDRTVRIW-----DLRTGQCSLTLS----IEDG-VTTVAVSPGDGKYIAAGS 226
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV- 220
D +++W + ++G H +++SV ++R+G + SG+ D SV
Sbjct: 227 LDRAVRVWDS-----ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 221 --QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ P+ H V SV + + + S S D + W+
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKK 340
Query: 279 N 279
+
Sbjct: 341 S 341
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-36
Identities = 50/283 (17%), Positives = 100/283 (35%), Gaps = 65/283 (22%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSWN 56
H++ + + + A T + + H + V V ++
Sbjct: 14 HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 73
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
G LAT G +K+ ++ V G V+ L +
Sbjct: 74 NDGEYLAT-GCNKTTQVYRVSDG---SLVARLSDDS------------------------ 105
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
+ N + S+ I ++ F+ G L + ++D I+IW DI
Sbjct: 106 ---------AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW--DI-- 152
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
++ + + + G H++ I+S+ + G + SG+ D +V+ + DL G
Sbjct: 153 -ENR------KIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIW-----DLRTG-- 197
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
D V +V SPG+ + +A+ S D +++W+
Sbjct: 198 --QCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--- 58
H V S A + + + + + S D W+ G + L+GH N V SV+
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSSL 366
Query: 59 ---GTLLATCGRDKSVWIWEVMPG 79
+ AT D IW+
Sbjct: 367 GPEYNVFATGSGDCKARIWKYKKI 390
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-50
Identities = 61/286 (21%), Positives = 118/286 (41%), Gaps = 42/286 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V+ C + G +AS+D T +W+ G E GH+++V SV + ++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASM 121
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV------LFSCSYDNT 115
+ + RDK++ +W + G +C++ L GH V V+ P + S D
Sbjct: 122 IISGSRDKTIKVWTIK-G---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
+K W + + + GH+S I L+ + G + S D I +W
Sbjct: 178 VKAW-----NLNQFQIEADFI----GHNSNINTLTASPDGTLIASAGKDGEIMLWNL--- 225
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF-VESKDDLIDG 233
A+ + + T+S D +FS+ +S +A+ ++ F ++ + +
Sbjct: 226 --------AAKKAMYTLSA-QDE-VFSLAFSPNRYWLAAA-TATGIKVFSLDPQYLV--D 272
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
KA + S+ WS G + L + D +I++W++
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADG--QTLFAGYTDNVIRVWQVM 316
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 159 bits (406), Expect = 2e-47
Identities = 71/289 (24%), Positives = 113/289 (39%), Gaps = 48/289 (16%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNA 57
H V S A S LL +AS D T W+ G D V + +GH + V+ + A
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
G + DK++ +W+V G E GH DV V ++ S S D TIK
Sbjct: 76 DGAYALSASWDKTLRLWDVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF------NAKGDKLVSCSDDLTIKIWG 171
VW C+ T+ GH+ + + + ++S +D +K W
Sbjct: 133 VW---TIKG---QCLATL----LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230
++ G H+ I ++ S +G +IAS D + + +L
Sbjct: 183 L-----------NQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLW-----NL 225
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ A D +V S+ +SP R LA+A+ G IK++ L
Sbjct: 226 AAK----KAMYTLSAQD-EVFSLAFSP-NRYWLAAATATG-IKVFSLDP 267
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 7e-36
Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 42/252 (16%)
Query: 38 ECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEF--ECVSVLQGHAQD 94
TLEGH V S++ + LL + RDK++ W++ ++ V +GH+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
V+ S S+D T+++W D Q GH S + ++ + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRF----VGHKSDVMSVDIDKK 118
Query: 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----- 209
++S S D TIK+W I + L T+ G H+ + V
Sbjct: 119 ASMIISGSRDKTIKVW--TIKG----------QCLATLLG-HNDWVSQVRVVPNEKADDD 165
Query: 210 --IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 267
I S D V+ + +L + H+ ++N++ SP + L+ASA
Sbjct: 166 SVTIISAGNDKMVKAW-----NLNQF----QIEADFIGHNSNINTLTASP-DGTLIASAG 215
Query: 268 DDGMIKIWELAN 279
DG I +W LA
Sbjct: 216 KDGEIMLWNLAA 227
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-12
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL--------EGHENEVKSV 53
V S A+SP+ LA A+ ++ V L + E S+
Sbjct: 236 AQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQ--YLVDDLRPEFAGYSKAAEPHAVSL 292
Query: 54 SWNASGTLLATCGRDKSVWIWEVMPGN 80
+W+A G L D + +W+VM N
Sbjct: 293 AWSADGQTLFAGYTDNVIRVWQVMTAN 319
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-49
Identities = 59/334 (17%), Positives = 117/334 (35%), Gaps = 64/334 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN--A 57
H V + G+ +AT S D +++ +E + H++ + ++ W
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE 69
Query: 58 SGTLLATCGRDKSVWIWEVMPGNE------FECVSVLQGHAQDVKMVQWHPTMD--VLFS 109
G ++A+ DK+V +WE P E + + L + V++ P L
Sbjct: 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 129
Query: 110 CSYDNTIKVWWAEDTDS----DNWHCVQTISESNNGHSSTIWALSFN---AKGDKLVSCS 162
D ++++ A + ++ +S H + + LS+ +KL +
Sbjct: 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189
Query: 163 DDLTIKIWGADITRMQSG---DGYASW-----------RHLCTI-SGYHDRTIF------ 201
+ I ++ G+ S R I +G D I
Sbjct: 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249
Query: 202 ---------------SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245
S + + A G +D + + +L + LL +
Sbjct: 250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA----ELQSNLQVE-LLSEHDD 304
Query: 246 HDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
H+ +V SV W+ G +L+SA DDG +++W+
Sbjct: 305 HNGEVWSVSWNLTG--TILSSAGDDGKVRLWKAT 336
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 1e-40
Identities = 49/257 (19%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQW 100
GH++ V V ++ G +ATC D+ + ++++ +E + H + + W
Sbjct: 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW 65
Query: 101 HPTMD--VLFSCSYDNTIKVW----WAEDTDSDNWHCVQTISESNNGHSSTIWALSF--N 152
++ S SYD T+K+W E+ W+ + T++ +++++ F
Sbjct: 66 ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN----DSKGSLYSVKFAPA 121
Query: 153 AKGDKLVSCSDDLTIKIW-GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-- 209
G KL +D ++++ + + ++S + + L H ++ F + W
Sbjct: 122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFS 181
Query: 210 --IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLA 264
+A A + ++ + DG + + K H + S+ W+P R L+A
Sbjct: 182 PEKLAVSALEQAIIYQ-----RGKDGKLH--VAAKLPGHKSLIRSISWAPSIGRWYQLIA 234
Query: 265 SASDDGMIKIWELANTL 281
+ DG I+I+++ L
Sbjct: 235 TGCKDGRIRIFKITEKL 251
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-31
Identities = 36/202 (17%), Positives = 77/202 (38%), Gaps = 27/202 (13%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--- 55
H ++ +W PS + LA ++ + G A L GH++ ++S+SW
Sbjct: 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS 225
Query: 56 -NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSY 112
L+AT +D + I+++ E +S L + + D +
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKIT-----EKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
D+ + E + + + H+ +W++S+N G L S DD +++W
Sbjct: 281 DSNTEEKA-ELQSNLQVELLSEH----DDHNGEVWSVSWNLTGTILSSAGDDGKVRLW-- 333
Query: 173 DITRMQSGDGYASWRHLCTISG 194
+ + ++ + I+
Sbjct: 334 ---KATYSN---EFKCMSVITA 349
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-19
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 2 HTRTVRSCAW--SPSGKLLATASFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNA 57
S + S + A D+ T ++ E ++ + H EV SVSWN
Sbjct: 257 EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH 91
+GT+L++ G D V +W+ NEF+C+SV+
Sbjct: 317 TGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-09
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW-EDVGGDYECVATLEGHE 47
H V S +W+ +G +L++A D +W +++C++ + +
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQQ 351
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-49
Identities = 57/281 (20%), Positives = 116/281 (41%), Gaps = 33/281 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V S G+ + S+D T +W+ G GH +V SV++++
Sbjct: 85 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVW 119
+ + RDK++ +W + + + H++ V V++ P + ++ SC +D +KVW
Sbjct: 143 IVSGSRDKTIKLWNTLGVC--KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ N GH+ + ++ + G S D +W D+
Sbjct: 201 -----NLANCKLKTNHI----GHTGYLNTVTVSPDGSLCASGGKDGQAMLW--DL----- 244
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLIDGPSYKM 238
+HL T+ G D I ++ +S A S++ + +E K ++D ++
Sbjct: 245 ----NEGKHLYTLDG-GD-IINALCFSPNRYWLCAATGPSIKIWDLEGK-IIVDELKQEV 297
Query: 239 LLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ KA S+ WS G + L + D ++++W++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADG--QTLFAGYTDNLVRVWQVT 336
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 8e-45
Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 42/285 (14%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNA 57
H V A +P ++ +AS D T +W+ + L GH + V V ++
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
G + D ++ +W++ G GH +DV V + + S S D TIK
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADIT 175
+W +T C T+ + HS + + F N+ +VSC D +K+W
Sbjct: 154 LW---NTLGV---CKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--- 202
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234
A+ + G H + +V S +G + ASG D + DL +G
Sbjct: 203 --------ANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLW-----DLNEG- 247
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
L D +N++ +SP R L +A+ IKIW+L
Sbjct: 248 ---KHLYTLDGGD-IINALCFSP-NRYWLCAATGP-SIKIWDLEG 286
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-40
Identities = 54/273 (19%), Positives = 98/273 (35%), Gaps = 38/273 (13%)
Query: 15 GKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSV 71
++ T ++ + TL+GH V ++ ++ + RDK++
Sbjct: 4 HHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 72 WIWEVMPGNEF--ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129
+W++ L+GH+ V V S S+D T+++W D
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW-----DLTTG 118
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189
+ GH+ + +++F++ ++VS S D TIK+W
Sbjct: 119 TTTRRF----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY----------T 164
Query: 190 CTISGYHDRTIFSVHWS---REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246
H + V +S II S D V+ + +L + L H
Sbjct: 165 VQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW-----NLANC----KLKTNHIGH 214
Query: 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+N+V SP + L AS DG +W+L
Sbjct: 215 TGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE 246
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-21
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 24/174 (13%)
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTI 167
S T +++ ++ T+ GH+ + ++ D ++S S D TI
Sbjct: 9 SGVDLGTENLYFQ-SMMTEQMTLRGTLK----GHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 226
+W +TR ++ G + G H + V S +G SG+ D +++ +
Sbjct: 64 IMW--KLTRDETNYGIP----QRALRG-HSHFVSDVVISSDGQFALSGSWDGTLRLW--- 113
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
DL G ++ H DV SV +S + R + S S D IK+W
Sbjct: 114 --DLTTG----TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGV 160
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 3e-11
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-------DYECVATLEGHENEVKSVS 54
+ + +SP+ L A+ + IW+ G + + + S++
Sbjct: 255 GGDIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 55 WNASGTLLATCGRDKSVWIWEVMPG 79
W+A G L D V +W+V G
Sbjct: 314 WSADGQTLFAGYTDNLVRVWQVTIG 338
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-49
Identities = 38/291 (13%), Positives = 94/291 (32%), Gaps = 36/291 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + G L A D ++ + D + + +
Sbjct: 55 GVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRADYTAVDTAKLQMRR 111
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + + + + Q H ++ +++ P+ + L S S D +K+W
Sbjct: 112 FILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW-- 166
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW----GADITRM 177
+ +T+ GH +T+ ++ +G ++S S D TI++W G I
Sbjct: 167 ---SVKDGSNPRTL----IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVH--------WSREG-IIASGAADDSVQFFVESKD 228
+ + + DR + + + G + +G +
Sbjct: 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT------- 272
Query: 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ + S + ++ NS+ + + ++GM+ W+L +
Sbjct: 273 -VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 4e-47
Identities = 39/300 (13%), Positives = 82/300 (27%), Gaps = 54/300 (18%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + + + + + H +E+ + + SG
Sbjct: 96 RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSGEA 153
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L + +D + IW V G L GH V + + S S D TI++W
Sbjct: 154 LISSSQDMQLKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW-- 208
Query: 122 EDTDSDNWHCVQTISESNN--------------------GHSSTIWALSFNAKGDKLVSC 161
+ + T + N +S L F G +++
Sbjct: 209 ---ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265
Query: 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDS 219
I + S + + S+ I +G +
Sbjct: 266 HVSGVITVHNV-----------FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 220 VQFF-VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + + S + + +N+V ++ G S+ D IK+ ++
Sbjct: 315 LAQWDLRSPECPVGEF--------LINEGTPINNVYFAAGAL--FVSSGFDTSIKLDIIS 364
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 6e-46
Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 52/306 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + PSG+ L ++S D IW G TL GH V ++ G
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ----------------WHPTMD 105
+ + D ++ +WE G + V +
Sbjct: 196 VLSASLDGTIRLWECGTG---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 106 VLFS--------CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GD 156
+ F I V + + + + + +L+ + +
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVH-----NVFSKEQTIQLPS---KFTCSCNSLTVDGNNAN 304
Query: 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216
+ + ++ + W +S + + I +V+++ + S
Sbjct: 305 YIYAGYENGMLAQWDL-----RSPECPVGE----FLIN-EGTPINNVYFAAGALFVSSGF 354
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIK 273
D S++ + S + ++D V+ + + +L ++
Sbjct: 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN-FCA 413
Query: 274 IWELAN 279
++ L+N
Sbjct: 414 LYNLSN 419
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-39
Identities = 43/306 (14%), Positives = 93/306 (30%), Gaps = 59/306 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD----YECVATLEGHE---NEVKSVS 54
T+T+ K + + + + +V + E + G+ + K +
Sbjct: 4 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63
Query: 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
+ G+ L D +++ + + S + A + M + +
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDG----SKMLKRADYTAVDTAKLQMRRFILGTTEG 119
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174
IKV DS+ + H S I L F G+ L+S S D+ +KIW
Sbjct: 120 DIKVL-----DSNFNLQREIDQ----AHVSEITKLKFFPSGEALISSSQDMQLKIWSV-- 168
Query: 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV------------- 220
+ T+ G H T+ + G + S + D ++
Sbjct: 169 ---------KDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218
Query: 221 -------QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273
V S + + N++++ + + + G+I
Sbjct: 219 FNRKENPHDGVNSIALFVGTDRQLH-----EISTSKKNNLEFGT-YGKYVIAGHVSGVIT 272
Query: 274 IWELAN 279
+ + +
Sbjct: 273 VHNVFS 278
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 5e-19
Identities = 22/190 (11%), Positives = 54/190 (28%), Gaps = 24/190 (12%)
Query: 90 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149
+ + + + + +N + + D + + + + N+
Sbjct: 3 HMTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGN 62
Query: 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209
+F G L D ++ DG + D +
Sbjct: 63 TFEKVGSHLYKARLDGHDFLFNT-----IIRDGSKMLKR-------ADY-TAVDTAKLQM 109
Query: 210 -IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268
G + ++ D ++ +AH ++ +++ P L S+S
Sbjct: 110 RRFILGTTEGDIKVL-----DSNFNLQREID----QAHVSEITKLKFFP-SGEALISSSQ 159
Query: 269 DGMIKIWELA 278
D +KIW +
Sbjct: 160 DMQLKIWSVK 169
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-49
Identities = 57/282 (20%), Positives = 109/282 (38%), Gaps = 47/282 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + VR K+ A+ S D T +W + + + SV +++ L
Sbjct: 17 HDQDVRDVVAVDDSKV-ASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKEL 73
Query: 62 LATCGRDKSV---WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
L G+D + ++ + + L GH +V + + V+ S S+D T KV
Sbjct: 74 LLFGGKDTMINGVPLFATSGE---DPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKV 128
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIW-ALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
W V + H++++W A + +K ++ S D TIK+W
Sbjct: 129 W-------KEGSLVYNLQ----AHNASVWDAKVVSFSENKFLTASADKTIKLW------- 170
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237
Q+ + + T SG H+ + + +G S + D ++ D+ G
Sbjct: 171 QND------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV-----DMHTG---- 215
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+L+ + H+ V ++ P + S +D ++IW N
Sbjct: 216 DVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKEN 255
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 7e-46
Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 47/281 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDAT---TCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
+ S + +LL D ++ G + + TL GH+ V S+S+
Sbjct: 58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE--DPLYTLIGHQGNVCSLSF--Q 113
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTMDVLFSCSYDNTIK 117
++ + DK+ +W E V LQ H V + + + + S D TIK
Sbjct: 114 DGVVISGSWDKTAKVW-----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
+W D ++T S H+ + L+ G +SCS+D IK+ M
Sbjct: 169 LW---QNDK----VIKTFS---GIHNDVVRHLAVVDDG-HFISCSNDGLIKLV-----DM 212
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237
+G L T G H+ ++ + G I S D +V+ + +G
Sbjct: 213 HTG------DVLRTYEG-HESFVYCIKLLPNGDIVSCGEDRTVRIW-----SKENGS--- 257
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
L + + + SV + S D +++I+
Sbjct: 258 -LKQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQE 295
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-32
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 2 HTRTVRSCAW-SPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASG 59
H +V S S TAS D T +W + + T G H + V+ ++ G
Sbjct: 141 HNASVWDAKVVSFSENKFLTASADKTIKLW-QND---KVIKTFSGIHNDVVRHLAVVDDG 196
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+C D + + ++ G + + +GH V ++ P D++ SC D T+++W
Sbjct: 197 HF-ISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIW 251
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+N Q I + +IW++ + GD ++ S D ++I+ + +R S
Sbjct: 252 -----SKENGSLKQVI----TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301
Query: 180 GD 181
D
Sbjct: 302 ED 303
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-14
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V P+G + + D T IW G + + SV ++G +
Sbjct: 224 HESFVYCIKLLPNGDI-VSCGEDRTVRIWSKENG--SLKQVITLPAISIWSVDCMSNGDI 280
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95
+ D V I+ + ++G +
Sbjct: 281 IVGSS-DNLVRIFSQEKS-RWASEDEIKGELRSG 312
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 2e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
ID + L K HD DV V + +AS S DG +++W +
Sbjct: 2 IDPFTGYQLSATLKGHDQDVRDVVAVDDSK--VASVSRDGTVRLWSKDD 48
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-49
Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 46/306 (15%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIW--------EDVGGDYECVATLEGHENEVKS 52
H V + P ++AT + + ++ + G+ + L GH+ E
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 53 VSWNASGT-LLATCGRDKSVWIWEV----MPGNEFECVSVLQGHAQDVKMVQWHPTMDVL 107
+SWN + L + D ++ +W++ + ++ GH V+ V WH + L
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 108 F-SCSYDNTIKVWWAEDT-DSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDD 164
F S + D + +W DT +++ T+ + H++ + LSFN + L + S D
Sbjct: 247 FGSVADDQKLMIW---DTRNNNTSKPSHTV----DAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQF 222
T+ +W D+ ++ L + H IF V WS E I+AS D +
Sbjct: 300 KTVALW--DLRNLKL--------KLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 223 F-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+ +S +D DGP LL H ++ W+P E ++ S S+D ++++W
Sbjct: 349 WDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Query: 276 ELANTL 281
++A +
Sbjct: 407 QMAENV 412
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 58/282 (20%), Positives = 113/282 (40%), Gaps = 33/282 (11%)
Query: 12 SPSGKLLATASFDATTCIWEDVGGDYE--CVATLEGHENEVKSVSWN-ASGTLLATCGRD 68
+ +D + G + HE EV + + ++AT
Sbjct: 91 PSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS 150
Query: 69 KSVWIWEV-------MPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW 120
V +++ P E + L+GH ++ + W+P L S S D+TI +W
Sbjct: 151 SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD 210
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQS 179
T ++ V GH++ + ++++ + L S +DD + IW D +
Sbjct: 211 INATPKEHR--VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW--DTRNNNT 266
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYK 237
+ T+ H + + ++ I+A+G+AD +V + DL + K
Sbjct: 267 S------KPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALW-----DLRNL---K 311
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ L ++H ++ VQWSP +LAS+ D + +W+L+
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 5e-49
Identities = 52/293 (17%), Positives = 106/293 (36%), Gaps = 44/293 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V A S ++S+D T +W+ G GH++EV SV+++
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP----------TMDVLFSCS 111
+ + G ++ + +W ++ +F + + H+ V V++ P S
Sbjct: 133 ILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
+D +KVW +T+ T H S + LS + G + + D + IW
Sbjct: 192 WDGRLKVW---NTNF---QIRYTFK----AHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF-VESK-- 227
+ + TI + ++ + +A G D V+ F + ++
Sbjct: 242 I-----------LNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSK 288
Query: 228 -DDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ +K + S+ W+ G + L + DG+I+ +
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALG--KKLFAGFTDGVIRTFSFE 339
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 9e-43
Identities = 51/299 (17%), Positives = 100/299 (33%), Gaps = 56/299 (18%)
Query: 2 HTRTVRSCAW------SPSGKLLATASFDATTCIW-----EDVGGDYECVATLEGHENEV 50
H+ V S + +L + S D T IW E G L GH + V
Sbjct: 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79
Query: 51 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110
++ + + DK++ +W++ G GH +V V + P + S
Sbjct: 80 SDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF----------NAKGDKLVS 160
+ IK+W + + HS + + + S
Sbjct: 137 GAEREIKLW---NILGECKFSSAEK----ENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219
D +K+W + + T H+ + + S G IA+G D
Sbjct: 190 VGWDGRLKVW--NTNF----------QIRYTFKA-HESNVNHLSISPNGKYIATGGKDKK 236
Query: 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + D+++ ++E +N + ++P + + +A +D +KI+ L
Sbjct: 237 LLIW-----DILNLT----YPQREFDAGSTINQIAFNP-KLQWVAVGTDQ-GVKIFNLM 284
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-33
Identities = 54/280 (19%), Positives = 98/280 (35%), Gaps = 59/280 (21%)
Query: 22 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS------GTLLATCGRDKSVWIWE 75
+ +++ I G LEGH + V S+ S +L + RDK+V IW+
Sbjct: 2 ADNSSLDIQVVKRG------ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWK 55
Query: 76 V----MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC 131
+ G L GH V + S S+D T+++W D
Sbjct: 56 LYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW-----DLRTGTT 110
Query: 132 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 191
+ GH S +++++F+ +++S + IK+W S
Sbjct: 111 YKRF----VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA---------E 157
Query: 192 ISGYHDRTIFSVHWSREG-----------IIASGAADDSVQFF-VESKDDLIDGPSYKML 239
H + V +S AS D ++ + + +
Sbjct: 158 KEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-----------I 205
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
KAH+ +VN + SP + +A+ D + IW++ N
Sbjct: 206 RYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILN 244
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 5e-13
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW-----------EDVGGDYECVATLEGHENEV 50
T+ A++P + +A + D I+ +G +
Sbjct: 254 AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312
Query: 51 KSVSWNASGTLLATCGRDKSVWIWEVMPG 79
S++WNA G L D + +
Sbjct: 313 TSLAWNALGKKLFAGFTDGVIRTFSFETS 341
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 5e-45
Identities = 13/286 (4%), Positives = 42/286 (14%), Gaps = 39/286 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
T I+ G + L+ + ++ +
Sbjct: 24 AADVHLGTKNCDFQMERY-VYKRRTDGIYIINLG--KTWEKLQLAARVIVAIENPQDIIV 80
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + + ++ H Q + +
Sbjct: 81 QSARPYGQRAVLKFAQYTG---AHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQP 137
Query: 122 E--DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQ 178
+ + + A K + + Q
Sbjct: 138 IKESALGNIPTIAFCDT----DSPMRYVDIGIPANNKGKQSIGCLFWLLARM--VL---Q 188
Query: 179 SGDGYASWRHLCTISGY----HDRTIFSVHW-SREG-IIASGAADDSVQFFVESKDDLID 232
+ + + A+ A D + +
Sbjct: 189 MR------GTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGA--------VAE 234
Query: 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ + P + +
Sbjct: 235 YAAPAADTWGGEWGTDAAAQPAAIP-AQAGADWTAAPAPAAGGWDT 279
|
| >3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-34
Identities = 18/246 (7%), Positives = 50/246 (20%), Gaps = 26/246 (10%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
E + + + ++ I+ + G + LQ A+ +
Sbjct: 16 EQDIQMMLAADVHLGTKNCDFQMERY-VYKRRTDGIYIINLG---KTWEKLQLAARVIVA 71
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
++ + V + Y + +A+ T H+ + +
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTG-----AHAIAG----RHTPGTFTNQLQTSFSE 122
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA 215
G+ + + + G
Sbjct: 123 PRLLILTDPRTDHQPI-KESALGNIPTIAF---CDTD-SPMRYVDIGIPANNKGKQSIGC 177
Query: 216 ADDSVQFFVESKDDLIDGPSYKMLLKKE-KAHDMDVNSVQWSPGERRLLASASDDGMIKI 274
+ L + K + + + + A+ +
Sbjct: 178 LFWLLARM-----VLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAV 232
Query: 275 WELANT 280
E A
Sbjct: 233 AEYAAP 238
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 4e-48
Identities = 55/297 (18%), Positives = 108/297 (36%), Gaps = 42/297 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNAS- 58
WS + K++A A + + ++ + +A H + VK+V +NA
Sbjct: 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ 125
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFE------CVSVLQGHAQDVKMVQWHPTM-DVLFSCS 111
+LA+ G + ++IW++ E +V + W+ ++ V S
Sbjct: 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG 185
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNN--GHSSTIWALSFNAKGDKLVSCS----DDL 165
N +W D V +S ++ G + + ++ K V+ + +D
Sbjct: 186 SSNFASIW-----DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFF 223
+I IW D+ + L T++ H + I S+ W E ++ S D++V +
Sbjct: 241 SILIW--DLRNANT--------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
Query: 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ A +++P L A AS D I++ L N
Sbjct: 291 -----NPESAEQLSQF----PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 1e-45
Identities = 44/284 (15%), Positives = 100/284 (35%), Gaps = 25/284 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE--NEVKSVSWNASG 59
H + + + SG + A S D++ +W + D + + ++ + W+ +
Sbjct: 22 HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAAD--SEKPIASLQVDSKFNDLDWSHNN 79
Query: 60 TLLATCGRDKSVWIWEVMPGN-EFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIK 117
++A + S+ ++ N ++ H+ VK V+++ D + S + I
Sbjct: 80 KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITR 176
+W + + + +L++N S IW
Sbjct: 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL---- 195
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADD-SVQFFVESKDDLI 231
++ + SG + + V W + A+G+ +D S+ + DL
Sbjct: 196 -KAKKEVIHLSYTSPNSG-IKQQLSVVEWHPKNSTRVATATGSDNDPSILIW-----DLR 248
Query: 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
+ + L + H + S+ W + LL S+ D + +W
Sbjct: 249 NANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-36
Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 30/269 (11%)
Query: 21 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80
+ + + E H+ VS SGT+ A D S+ +W ++
Sbjct: 1 GAMGSMVKLAEFS----RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA- 55
Query: 81 EFECVSVLQGHAQD--VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138
+ + D + W ++ + +++++ ++ + + S
Sbjct: 56 --DSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTN-EANNAINSMARFS-- 110
Query: 139 NNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197
HSS++ + FNAK + L S ++ I IW D+ + +
Sbjct: 111 --NHSSSVKTVKFNAKQDNVLASGGNNGEIFIW--DMNKCTESPSNYTPLTPGQSMS-SV 165
Query: 198 RTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE--KAHDMDVNSV 253
+ S+ W++ + AS + + + DL L ++ V
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIW-----DLKAKKEVIHLSYTSPNSGIKQQLSVV 220
Query: 254 QWSPGERRLLASAS---DDGMIKIWELAN 279
+W P +A+A+ +D I IW+L N
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDLRN 249
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-18
Identities = 23/177 (12%), Positives = 47/177 (26%), Gaps = 25/177 (14%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG- 59
H + + S W LL ++ D T +W E ++ N +
Sbjct: 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAP 318
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
L A D + + ++ + + ++ W
Sbjct: 319 DLFACASFDNKIEVQ-------------------TLQNLTNTLDEQETETKQQESETDFW 359
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADIT 175
+ ++ + A + A G KLV + D + I I+
Sbjct: 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHW-AFGGKLVQITPDGKGVSITNPKIS 415
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-48
Identities = 52/307 (16%), Positives = 102/307 (33%), Gaps = 45/307 (14%)
Query: 2 HTRTVRSCAWSPSG----KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 57
+CAW+ LLA A I + +C+ GH N + + ++
Sbjct: 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVGHGNAINELKFHP 125
Query: 58 S-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
LL + +D ++ +W + ++GH +V + + + SC D+++
Sbjct: 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 185
Query: 117 KVWWAED-------TDSDNWHCVQTISESN------------NGHSSTIWALSFNAKGDK 157
K+W +S +++ +T + H + + + + GD
Sbjct: 186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWS--REG-II 211
++S S + I W D TI G Y I+ + +S ++
Sbjct: 244 ILSKSCENAIVCWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD--VNSVQWSP-GERRLLASASD 268
A G + + DL +K H + +S +L + D
Sbjct: 303 ALGNQVGKLYVW-----DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS--SILIAVCD 355
Query: 269 DGMIKIW 275
D I W
Sbjct: 356 DASIWRW 362
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-46
Identities = 51/315 (16%), Positives = 115/315 (36%), Gaps = 50/315 (15%)
Query: 2 HTRTVRSCAWSPSGK----LLATASFDATTCIWEDVGGDYECVATLEGHEN-----EVKS 52
H + + ++ K L+ ++E + L+ + + +
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYT 74
Query: 53 VSW----NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVL 107
+W N S LLA G + I + +C+ GH + +++HP ++L
Sbjct: 75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLL 131
Query: 108 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167
S S D+ +++W + +D V GH + + ++ G+K++SC D ++
Sbjct: 132 LSVSKDHALRLW---NIQTDT--LVAIF-GGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 185
Query: 168 KIWGA-----------------DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 210
K+W + T + T H + V W + +
Sbjct: 186 KLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI-HRNYVDCVRWLGD-L 243
Query: 211 IASGAADDSV-----QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLA 264
I S + ++++ + D + S +L + D+ +++S +++LA
Sbjct: 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303
Query: 265 SASDDGMIKIWELAN 279
+ G + +W+L
Sbjct: 304 LGNQVGKLYVWDLEV 318
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-30
Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 59/278 (21%)
Query: 37 YECVATL-EGHENEVKSVSWNASG----TLLATCGRDKSVWIWEVMPGNEFECVSVLQGH 91
++CV +L E H + V +N L+ V ++E + +LQ +
Sbjct: 7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ---GEIRLLQSY 63
Query: 92 A-----QDVKMVQW----HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142
++ W + + +L I++ + C++ GH
Sbjct: 64 VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII-----NPITMQCIKHYV----GH 114
Query: 143 SSTIWALSFN-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201
+ I L F+ + L+S S D +++W Q+ A + + G H +
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNI-----QTDTLVAIFGGV---EG-HRDEVL 165
Query: 202 SVHWSREG-IIASGAADDSVQF-----------------FVESKDDLIDGPSYKML--LK 241
S + G I S D S++ + +K +
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H V+ V+W L+ S S + I W+
Sbjct: 226 TRDIHRNYVDCVRWLG---DLILSKSCENAIVCWKPGK 260
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-47
Identities = 52/282 (18%), Positives = 102/282 (36%), Gaps = 30/282 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ SPSG A+ IW+ + T+ VK +SW++
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 62 LATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKV 118
+A G R++ ++ G L G A+ + V + P+ + S S DNT+ +
Sbjct: 118 IAAVGEGRERFGHVFLFDTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
+ + + T H+ + ++ +N G S D TI ++
Sbjct: 175 F-----EGPPFKFKSTF----GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG-----V 220
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237
G + + H ++F + WS +G IAS +AD +++ + + + K
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK--------IWNVATLK 272
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ ++ + ++ L S S +G I
Sbjct: 273 VEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFVNPEL 313
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 1e-45
Identities = 57/285 (20%), Positives = 103/285 (36%), Gaps = 38/285 (13%)
Query: 2 HTRTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
R + S + PS + + S D T I+E G ++ +T H V SV +N G+
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPPFKFKSTFGEHTKFVHSVRYNPDGS 203
Query: 61 LLATCGRDKSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
L A+ G D ++ ++ + G + + H+ V + W P + S S D TI
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
K+W + +TI G L LVS S + I +
Sbjct: 264 KIW-----NVATLKVEKTIPV---GTRIEDQQLGIIWTKQALVSISANGFINFVNPE--- 312
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
G H++ I ++ S +G + S A+ + + D+ G S
Sbjct: 313 --------LGSIDQVRYG-HNKAITALSSSADGKTLFSADAEGHINSW-----DISTGIS 358
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
++ H + ++ + L + S D +K+ +
Sbjct: 359 NRVFPD---VHATMITGIKTTSKGD--LFTVSWDDHLKVVPAGGS 398
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-45
Identities = 50/279 (17%), Positives = 95/279 (34%), Gaps = 38/279 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGT 60
H+ +V WSP G +A+AS D T IW + T+ G E + + +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATL--KVEKTIPVGTRIEDQQLGIIWTKQ 295
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
L + + + G V GH + + + LFS + I W
Sbjct: 296 ALVSISANGFINFVNPELG---SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW- 351
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D + + H++ I + +KG L + S D +K+ A + + S
Sbjct: 352 ----DISTGISNRVFPD---VHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS 403
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
A+ + S +G IA A + + K L
Sbjct: 404 KAVANK---------LSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-----------LT 443
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ ++ + + V S ++ +A D + +++L+
Sbjct: 444 EVPISY--NSSCVALSNDKQF-VAVGGQDSKVHVYKLSG 479
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-43
Identities = 48/280 (17%), Positives = 88/280 (31%), Gaps = 40/280 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + + L + S + G GH + ++S +A G
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELG--SIDQVRYGHNKAITALSSSADGKT 338
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
L + + + W++ G V HA + ++ LF+ S+D+ +KV
Sbjct: 339 LFSADAEGHINSWDISTG---ISNRVFPDVHATMITGIKTTSK-GDLFTVSWDDHLKVVP 394
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
A + V + N SS L+ +A GD V+ I I+
Sbjct: 395 AGGS------GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-HIAIYS--------- 438
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239
+ Y+ V S + +A G D V + L +
Sbjct: 439 ----HGKLTEVPISYNSS---CVALSNDKQFVAVGGQDSKVHVY-----KLSGA---SVS 483
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
K H ++ SV +S L + + + +AN
Sbjct: 484 EVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVAN 522
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-40
Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 36/278 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE-CVATLEGHENEVKSVSWNASGT 60
H + + G L T S+D + G + A ++ ++ +A G
Sbjct: 366 HATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+ K + I+ + + V + + V + D+ + V+
Sbjct: 425 IAVA-ACYKHIAIY-----SHGKLTEVPISY--NSSCVALSNDKQFVAVGGQDSKVHVY- 475
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
H + I +++F+ G LV+ + + +
Sbjct: 476 --KLSGA-----SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY--SVANNFEL 526
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239
SW +H + V WS + +A+G+ D+SV + ++
Sbjct: 527 AHTNSWT-------FHTAKVACVSWSPDNVRLATGSLDNSVIVW-----NMNKP--SDHP 572
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + AH M + E + SA D IK W +
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 8e-40
Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 42/286 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATAS--FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
T +P+G + + T + + H ++ + SG
Sbjct: 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE-----IYTEHSHQTTVAKTSPSG 71
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--YDNTIK 117
A+ +V IW+ + + + VK + W + + +
Sbjct: 72 YYCASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITR 176
V+ D ++ G + + ++ F +++S SDD T+ I+
Sbjct: 131 VF-----LFDTGTSNGNLT----GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG---- 177
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
++ T H + + SV ++ +G + AS D ++ + + +DG
Sbjct: 178 -------PPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLY-----NGVDGTK 224
Query: 236 YKML---LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ K AH V + WSP + +ASAS D IKIW +A
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVA 269
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-39
Identities = 37/279 (13%), Positives = 77/279 (27%), Gaps = 35/279 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + + + S GK L +A + W D+ + H + + + G L
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSW-DISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
T D + + +V + + D+ + I ++
Sbjct: 382 -FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIY-- 437
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ + S ++ + + D + ++ +
Sbjct: 438 -----SHGKLTEVP------ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV- 485
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
H I SV +S G + + V + + +
Sbjct: 486 ---------KTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPY-----SVANNFE-LAHT 529
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H V V WSP RL A+ S D + +W +
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNK 567
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-10
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 30/141 (21%)
Query: 141 GHSSTIWALSFNAKGDKLVSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198
T L GDK+ C+ T+ + T + + H
Sbjct: 16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE---------------HSH 60
Query: 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE-KAHDMDVNSVQWS 256
S G ASG +V+ + D +LK V + W
Sbjct: 61 QTTVAKTSPSGYYCASGDVHGNVRIW-----DTTQT---THILKTTIPVFSGPVKDISWD 112
Query: 257 PGERRLLASASD--DGMIKIW 275
E + +A+ + + ++
Sbjct: 113 S-ESKRIAAVGEGRERFGHVF 132
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 4e-47
Identities = 68/278 (24%), Positives = 114/278 (41%), Gaps = 35/278 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT +V +++ T S D+T +W+ G E + TL H V + +N +
Sbjct: 172 HTGSVLCLQ--YDERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFN--NGM 225
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ TC +D+S+ +W++ + VL GH V +V + + S S D TIKVW
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVW-- 281
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
++ V+T+ NGH I L + +VS S D TI++W
Sbjct: 282 ---NTSTCEFVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI--------- 323
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
L + G H+ + + + I SGA D ++ + P+ + L+
Sbjct: 324 --ECGACLRVLEG-HEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H V +Q+ + S+S D I IW+ N
Sbjct: 380 TLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWDFLN 414
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-41
Identities = 61/279 (21%), Positives = 124/279 (44%), Gaps = 45/279 (16%)
Query: 2 HTRTVRS-CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ T + + + + D T IW+ EC L GH V + ++
Sbjct: 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYD--ER 184
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
++ T D +V +W+V G E ++ L H + V ++++ M + +CS D +I VW
Sbjct: 185 VIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVW- 238
Query: 121 AEDTDS-DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
D S + + + GH + + + F+ +VS S D TIK+W + + +
Sbjct: 239 --DMASPTDITLRRVLV----GHRAAVNVVDFD--DKYIVSASGDRTIKVW--NTSTCE- 287
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
+ T++G H R I + + ++ SG++D++++ + D+ G ++L
Sbjct: 288 --------FVRTLNG-HKRGIACLQYRDR-LVVSGSSDNTIRLW-----DIECGACLRVL 332
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ H+ V +++ + + S + DG IK+W+L
Sbjct: 333 ----EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLV 364
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-29
Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 39/242 (16%)
Query: 39 CVATLEGHENEVKSV-SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
+ + K V + + RD ++ IW+ EC +L GH V
Sbjct: 122 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLC 178
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
+Q+ + + + S D+T++VW D + + T+ H + L FN
Sbjct: 179 LQYDERV--IITGSSDSTVRVW-----DVNTGEMLNTL----IHHCEAVLHLRFN--NGM 225
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAAD 217
+V+CS D +I +W M S R + G H + V + + I S + D
Sbjct: 226 MVTCSKDRSIAVW-----DMASPTDITLRR---VLVG-HRAAVNVVDFD-DKYIVSASGD 275
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+++ + + + L H + +Q+ RL+ S S D I++W++
Sbjct: 276 RTIKVW-----NTSTCEFVRTL----NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDI 323
Query: 278 AN 279
Sbjct: 324 EC 325
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-12
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW-------EDVGGDYECVATLEGHENEVKSVS 54
H VR + K + + ++D +W C+ TL H V +
Sbjct: 335 HEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 392
Query: 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 95
++ + + D ++ IW+ + +
Sbjct: 393 FD--EFQIVSSSHDDTILIWDFLND---PAAQAEPPRSPSR 428
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 35/187 (18%)
Query: 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW----HCVQTISESNNGHSSTIWALSF 151
K + + + Y I+ + NW H +Q I + S ++ L +
Sbjct: 86 KPPDGNAPPNSFYRALYPKIIQDIETIE---SNWRCGRHSLQRI-HCRSETSKGVYCLQY 141
Query: 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGII 211
+ K+VS D TIKIW + ++G H ++ + + E +I
Sbjct: 142 D--DQKIVSGLRDNTIKIWDK-----------NTLECKRILTG-HTGSVLCLQYD-ERVI 186
Query: 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271
+G++D +V+ + D+ G L H V ++++ ++ + S D
Sbjct: 187 ITGSSDSTVRVW-----DVNTGEMLNTL----IHHCEAVLHLRFNN---GMMVTCSKDRS 234
Query: 272 IKIWELA 278
I +W++A
Sbjct: 235 IAVWDMA 241
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 56
H+ V + + ++S D T IW+ + +
Sbjct: 384 HSGRVFRLQFD--EFQIVSSSHDDTILIWDFLND--PAAQAEPPRSPSRTYTYIS 434
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 3e-46
Identities = 56/290 (19%), Positives = 111/290 (38%), Gaps = 39/290 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ V S G+ + S+D +W+ G GH +V SV+++
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVW 119
+ + RD+++ +W + ++ +GH V V++ P + S S+D T+KVW
Sbjct: 487 IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ N T++ GH+ + ++ + G S D + +W D+
Sbjct: 547 -----NLSNCKLRSTLA----GHTGYVSTVAVSPDGSLCASGGKDGVVLLW--DL----- 590
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKD---------D 229
A + L ++ + I ++ +S A + ++ + +ESK
Sbjct: 591 ----AEGKKLYSLEA-NS-VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLK 644
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELA 278
+ K + S+ WS G L S DG+I++W +
Sbjct: 645 AEAEKADNSGPAATKRKVIYCTSLNWSADG--STLFSGYTDGVIRVWGIG 692
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 3e-45
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 40/285 (14%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNA 57
HT V + A + ++ +AS D + +W+ D L GH + V+ V ++
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
G + D + +W++ G GH +DV V + + S S D TIK
Sbjct: 441 DGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADIT 175
+W +T + C TISE GH + + F N +VS S D T+K+W
Sbjct: 498 LW---NTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL--- 548
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234
+ + T++G H + +V S +G + ASG D V + DL +G
Sbjct: 549 --SNC------KLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLW-----DLAEG- 593
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
L +A+ + ++++ +SP R L +A++ G IKIW+L +
Sbjct: 594 ---KKLYSLEANSV-IHALCFSP-NRYWLCAATEHG-IKIWDLES 632
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-21
Identities = 41/234 (17%), Positives = 75/234 (32%), Gaps = 31/234 (13%)
Query: 45 GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104
+ + +V+ + LA + + G + + V+ +
Sbjct: 294 NKDKPLGAVALKSYEEELAK-DPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAAS 352
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSD 163
+ + A H+ + A++ D +VS S
Sbjct: 353 GRQTVDAALAAAQTNAAAGLVLKGTMR---------AHTDMVTAIATPIDNADIIVSASR 403
Query: 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQF 222
D +I +W G ++G H + V S +G SG+ D ++
Sbjct: 404 DKSIILWKLTKDDKAYG------VAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIW 275
+ DL G + ++ H DV SV +S R + SAS D IK+W
Sbjct: 457 W-----DLAAG----VSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLW 499
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 24/172 (13%)
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ + S + + + E+ ++ + + A++ + ++L
Sbjct: 265 GINAASPNKELAKEFLENYLL-TDEGLEAV-----NKDKPLGAVALKSYEEELAKDPRI- 317
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225
+ A Q G+ ++ +S + +V + G AA + Q
Sbjct: 318 AATMENA-----QKGE---IMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA 369
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ +L +AH V ++ ++ SAS D I +W+L
Sbjct: 370 A---------GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKL 412
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 3e-46
Identities = 61/292 (20%), Positives = 105/292 (35%), Gaps = 40/292 (13%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
H +V + W P + ++SFD T +W+ + E V S + T
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--QTADVF-NFEETVYSHHMSPVST 154
Query: 61 ---LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD---VLFSCSYDN 114
L+A R V + ++ G C +LQGH Q++ V W P +L + S D+
Sbjct: 155 KHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSP--RYDYILATASADS 209
Query: 115 TIKVWWAE-------DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167
+K+W D N Q + +N H+ + L F + G L++ D +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 168 KIWGADITRMQSGDGYASWR-HLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226
++W + +G+ +C S + S S E ++ +
Sbjct: 270 RLWNS-----SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF--VFVPYGSTIAVY--- 319
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
+ G ML K H V+ + + L S S D I W +
Sbjct: 320 --TVYSGEQITML----KGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVPS 364
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 3e-41
Identities = 51/293 (17%), Positives = 91/293 (31%), Gaps = 50/293 (17%)
Query: 2 HTRTVRSCAWSPSGK---LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
TV S SP L+A + + + G C L+GH E+ +VSW+
Sbjct: 140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCSHILQGHRQEILAVSWSPR 197
Query: 59 G-TLLATCGRDKSVWIWEVMPGNEFECV-------------SVLQGHAQDVKMVQWHPTM 104
+LAT D V +W+V + S H V + +
Sbjct: 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNAKGDKLVSCSD 163
L + DN +++W +S N + N + + V
Sbjct: 258 LHLLTVGTDNRMRLW-----NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312
Query: 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQF 222
TI ++ SG + + G H +T+ + + SG+ D ++
Sbjct: 313 GSTIAVYTV-----YSG------EQITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNIL- 359
Query: 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
Y+ + D Q +P +S+ ++G W
Sbjct: 360 -------AWVPSLYEPV----PDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-40
Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 53/294 (18%)
Query: 12 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKS 70
+ L ++T + + H + ++ G + + G D
Sbjct: 10 TGLEDPLRLRRAESTRRVLGLELN--KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGV 67
Query: 71 VWIWEVMPGNE----------FECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
+ ++++ + H V+ VQW+P D + S S+D T+KV
Sbjct: 68 IVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKV 126
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK---LVSCSDDLTIKIWGADIT 175
W D++ T+++ + K + + +++
Sbjct: 127 W-----DTNTLQTADVF-----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL--- 173
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQF-------FVES 226
S + G H + I +V WS I+A+ +AD V+
Sbjct: 174 --------KSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
D +G + + AH+ VN + ++ G L + D +++W +N
Sbjct: 225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSN 276
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-37
Identities = 35/301 (11%), Positives = 92/301 (30%), Gaps = 44/301 (14%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIW-----------EDVGGDYECVATLEGHENE 49
H + + P G+ + + D ++ + H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 50 VKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP---TMD 105
V++V W + + DK++ +W+ + V + V P
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---QTADVF-NFEETVYSHHMSPVSTKHC 157
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDD 164
++ + +++ D + C + GH I A+S++ + D L + S D
Sbjct: 158 LVAVGTRGPKVQLC-----DLKSGSCSHILQ----GHRQEILAVSWSPRYDYILATASAD 208
Query: 165 LTIKIW-----GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD 218
+K+W + + +G S + H+ + + ++ +G + + D+
Sbjct: 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA-HNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 219 SVQFFVESKDDLIDGPSYKMLL-KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
++ + + +G + + K + I ++ +
Sbjct: 268 RMRLW-----NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGSTIAVYTV 321
Query: 278 A 278
Sbjct: 322 Y 322
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-26
Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 37/239 (15%)
Query: 52 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFS 109
S L + + + + + V + H + + P + + S
Sbjct: 6 SARQTGLEDPLRLRRAESTRRVLGLELN---KDRDVERIHGGGINTLDIEPV-EGRYMLS 61
Query: 110 CSYDNTIKVWWAED----TDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDD 164
D I ++ E+ + + + H ++ + + S S D
Sbjct: 62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS----REGIIASGAADDSV 220
T+K+W + + + + T++S H S + ++A G V
Sbjct: 122 KTLKVWDT-----------NTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
Q DL G +L + H ++ +V WSP +LA+AS D +K+W++
Sbjct: 169 QLC-----DLKSGSCSHIL----QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-19
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ ++ + +T ++ G E + L+GH V + ++
Sbjct: 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQE 348
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWW 120
L + RD ++ W + + Q +P + +S S + W
Sbjct: 349 LYSGSRDCNILAWVPSLYEP------VPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402
Query: 121 AED 123
Sbjct: 403 HPQ 405
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
+ D L + T ++ G + H I ++
Sbjct: 4 FLSARQTGLEDPLRLRRAESTRRVLGL-----------ELNKDRDVERI-HGGGINTLDI 51
Query: 206 S-REG-IIASGAADDSVQFF----VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259
EG + SG +D + + + + H V +VQW P +
Sbjct: 52 EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111
Query: 260 RRLLASASDDGMIKIWELA 278
+ S+S D +K+W+
Sbjct: 112 TGMFTSSSFDKTLKVWDTN 130
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-46
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 44/277 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S ++ + S D T +W G EC+ TL GH + V+ +
Sbjct: 158 HTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHL--HEKR 211
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + RD ++ +W++ G +C+ VL GH V+ VQ+ + S +YD +KVW
Sbjct: 212 VVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVW-- 264
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D + C+ T+ GH++ +++L F+ G +VS S D +I++W
Sbjct: 265 ---DPETETCLHTLQ----GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDV--------- 306
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
+ + T++G H + + I+ SG AD +V+ + D+ G L+
Sbjct: 307 --ETGNCIHTLTG-HQSLTSGMELK-DNILVSGNADSTVKIW-----DIKTG-QCLQTLQ 356
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
H V +Q++ + ++SDDG +K+W+L
Sbjct: 357 GPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-46
Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V +C G + + S D T +W V G +C+ TL GH V S +
Sbjct: 117 HDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQM--RDNI 171
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D+++ +W G EC+ L GH V+ + H + S S D T++VW
Sbjct: 172 IISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVW-- 224
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D + C+ + GH + + + ++ G ++VS + D +K+W D
Sbjct: 225 ---DIETGQCLHVLM----GHVAAVRCVQYD--GRRVVSGAYDFMVKVW--DPETET--- 270
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
L T+ G H ++S+ + + SG+ D S++ + D+ G +
Sbjct: 271 ------CLHTLQG-HTNRVYSLQFDGI-HVVSGSLDTSIRVW-----DVETG----NCIH 313
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H + ++ +L S + D +KIW++
Sbjct: 314 TLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKT 348
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 7e-44
Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 47/281 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT TVR K + + S DAT +W+ G +C+ L GH V+ V ++ G
Sbjct: 198 HTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG--QCLHVLMGHVAAVRCVQYD--GRR 251
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + D V +W+ C+ LQGH V +Q+ + S S D +I+VW
Sbjct: 252 VVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVW-- 304
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
D + +C+ T++ GH S + + LVS + D T+KIW
Sbjct: 305 ---DVETGNCIHTLT----GHQSLTSGMELK--DNILVSGNADSTVKIWDI--------- 346
Query: 182 GYASWRHLCTISGY--HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
+ + L T+ G H + + +++ + + + D +V+ + DL G + L
Sbjct: 347 --KTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLW-----DLKTGEFIRNL 398
Query: 240 L-KKEKAHDMDVNSVQWSPGERRLLASASDDG----MIKIW 275
+ + V ++ S + + A S +G + +
Sbjct: 399 VTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVL 438
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 7e-39
Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 44/279 (15%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ R V + S A W G+ + L+GH++ V + G
Sbjct: 74 IKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRR--GELKSPKVLKGHDDHVITC-LQFCGN 130
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+ + D ++ +W + G +C+ L GH V Q +++ S S D T+KVW
Sbjct: 131 RIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW- 184
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
+++ C+ T+ GH+ST+ + + ++VS S D T+++W DI
Sbjct: 185 ----NAETGECIHTL----YGHTSTVRCMHLH--EKRVVSGSRDATLRVW--DI------ 226
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ + L + G H + V + + SGA D V+ + D L
Sbjct: 227 ---ETGQCLHVLMG-HVAAVRCVQYDGR-RVVSGAYDFMVKVW-----DPETETCLHTL- 275
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ H V S+Q+ + S S D I++W++
Sbjct: 276 ---QGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVET 308
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-30
Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT V S + G + + S D + +W+ G C+ TL GH++ + +
Sbjct: 278 HTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMEL--KDNI 331
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQG---HAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
L + D +V IW++ G +C+ LQG H V +Q++ + + + S D T+K+
Sbjct: 332 LVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 119 WWAEDTDSDNWHCVQT-ISESNNGHSSTIWALSFNAKGDKLVSCSDDLT----IKIWGAD 173
W D ++ ++ + G +W + + S + T + + D
Sbjct: 387 W-----DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441
Query: 174 I 174
+
Sbjct: 442 V 442
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-28
Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 40/252 (15%)
Query: 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS 86
+W + + L +V + S A + + W E +
Sbjct: 56 NLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRR---GELKSPK 112
Query: 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146
VL+GH V + + S S DNT+KVW + C++T+ GH+ +
Sbjct: 113 VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVW-----SAVTGKCLRTLV----GHTGGV 162
Query: 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206
W+ + ++S S D T+K+W A + + T+ G H T+ +H
Sbjct: 163 WSSQMR--DNIIISGSTDRTLKVWNA-----------ETGECIHTLYG-HTSTVRCMHLH 208
Query: 207 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 266
E + SG+ D +++ + D+ G +L H V VQ+ R + S
Sbjct: 209 -EKRVVSGSRDATLRVW-----DIETGQCLHVL----MGHVAAVRCVQYDG---RRVVSG 255
Query: 267 SDDGMIKIWELA 278
+ D M+K+W+
Sbjct: 256 AYDFMVKVWDPE 267
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-16
Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 40/213 (18%)
Query: 68 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 127
D +W + E L + V + + W
Sbjct: 55 DNLLWREKCK---EEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNW-----RRG 106
Query: 128 NWHCVQTISESNNGHSSTIW-ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186
+ + GH + L F G+++VS SDD T+K+W A +
Sbjct: 107 ELKSPKVLK----GHDDHVITCLQFC--GNRIVSGSDDNTLKVWSA-----------VTG 149
Query: 187 RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246
+ L T+ G H ++S + II SG+ D +++ + + G L H
Sbjct: 150 KCLRTLVG-HTGGVWSSQMR-DNIIISGSTDRTLKVW-----NAETGECIHTL----YGH 198
Query: 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
V + + + S S D +++W++
Sbjct: 199 TSTVRCMHLHE---KRVVSGSRDATLRVWDIET 228
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 5e-46
Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 46/286 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ V S WS G L+ + I++ + T+ GH+ V +SWN +
Sbjct: 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN--RHV 188
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
L++ R ++ +V N + LQGH+ +V + W L S DN +++W
Sbjct: 189 LSSGSRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW-- 244
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV---SCSDDLTIKIWGADITRMQ 178
D+ + T H++ + A+++ L+ + D I W A
Sbjct: 245 ---DARSSIPKFTK----TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA------ 291
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS--GAADDSVQFFVESKDDLIDGPS 235
A+ + T+ + S+ WS I S G D+++ + S
Sbjct: 292 -----ATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIW--------SYSS 336
Query: 236 YKMLLKKE-KAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
+ + + AHD V SP G L++A+ D +K W + +
Sbjct: 337 SGLTKQVDIPAHDTRVLYSALSPDGRI--LSTAASDENLKFWRVYD 380
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-35
Identities = 51/258 (19%), Positives = 96/258 (37%), Gaps = 40/258 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V +W+ +L++ S DV + TL+GH +EV ++W + G
Sbjct: 175 HQARVGCLSWN--RHVLSSGSRSGAIHHH-DVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDNTIKV 118
LA+ G D V IW+ H VK V W P + + D I
Sbjct: 232 LASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC--SDDLTIKIWGADITR 176
W ++ V T+ + S + +L ++ +++S D + IW +
Sbjct: 289 W-----NAATGARVNTV----DAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235
+ I HD + S +G I+++ A+D++++F+ + DG
Sbjct: 339 LT---------KQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFW-----RVYDG-- 381
Query: 236 YKMLLKKEKAHDMDVNSV 253
+ + +S+
Sbjct: 382 -DHVKRPIPITKTPSSSI 398
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-33
Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 43/280 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGT 60
S + + + +W G A E V SV W+ G+
Sbjct: 90 IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHDGS 147
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
L+ + V I++V + + GH V + W+ VL S S I
Sbjct: 148 FLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHH- 201
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D N H + T+ GHSS + L++ + G +L S +D ++IW A
Sbjct: 202 --DVRIAN-HQIGTLQ----GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA-------- 246
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSVQFFVESKDDLIDGPSY 236
S T + H+ + +V W G D + F+ + G
Sbjct: 247 ---RSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW-----NAATG--- 294
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIKIW 275
+ A V S+ WSP + ++++ D + IW
Sbjct: 295 -ARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-27
Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 36/245 (14%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
E V G ++ + S + +++V++W G+ + V
Sbjct: 82 ERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA--LAETDESTYVAS 139
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
V+W L + + ++ D ++ ++T+ GH + + LS+N
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIY-----DVESQTKLRTM----AGHQARVGCLSWN--RHV 188
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA 216
L S S I I + T+ G H + + W +G +ASG
Sbjct: 189 LSSGSRSGAIHHHDVRIAN----------HQIGTLQG-HSSEVCGLAWRSDGLQLASGGN 237
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA--SDDGMIKI 274
D+ VQ + D S K H+ V +V W P + LLA+ + D I
Sbjct: 238 DNVVQ--------IWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 275 WELAN 279
W A
Sbjct: 289 WNAAT 293
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-19
Identities = 29/191 (15%), Positives = 72/191 (37%), Gaps = 30/191 (15%)
Query: 90 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149
G D + + + + + + + VW ++D+ S+ + ++
Sbjct: 89 GIIDDYYLNLLDWSNLNVVAVALERNVYVW-----NADSGSVSALAET---DESTYVASV 140
Query: 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209
++ G L + + I+ D+ L T++G H + + W+R
Sbjct: 141 KWSHDGSFLSVGLGNGLVDIY--DVESQT---------KLRTMAG-HQARVGCLSWNRH- 187
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269
+++SG+ ++ D+ L+ H +V + W +L AS +D
Sbjct: 188 VLSSGSRSGAIHHH-----DVRIANHQIGTLQ---GHSSEVCGLAWRSDGLQL-ASGGND 238
Query: 270 GMIKIWELANT 280
+++IW+ ++
Sbjct: 239 NVVQIWDARSS 249
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVS 54
H V A SP G++L+TA+ D W G + V + + S++
Sbjct: 348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDG--DHVKRPIPITKTPSSSIT 399
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 4e-45
Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 45/303 (14%)
Query: 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS----- 58
+ A S + LAT F IW ++ V +++GH+ + ++
Sbjct: 69 KCGTFGATSLQQRYLATGDFGGNLHIW-NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE 127
Query: 59 -GTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQD-----VKMVQWHPTMDVLFSCS 111
+ T RD +V +W+ ++ + +QG + ++ V+ +
Sbjct: 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---DKLVSCSDDLTIK 168
+ IK++ D N + + +L F+ K +KLV+ S +
Sbjct: 188 DNGDIKLF-----DLRNMALRWET-----NIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237
Query: 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSV------ 220
++ D+ G+A + H T++ V + + + +
Sbjct: 238 VF--DMRTQHPTKGFA----SVSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290
Query: 221 ----QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ +S+ + LL+ ++S+ WSP +R L +S D +++
Sbjct: 291 YPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350
Query: 277 LAN 279
+
Sbjct: 351 VTK 353
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-41
Identities = 55/300 (18%), Positives = 102/300 (34%), Gaps = 47/300 (15%)
Query: 2 HTRTVRSCAWSPSGKLLAT----ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 57
TV C W P T A ++E GD + + +E +K ++ A
Sbjct: 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-KAKPIKCGTFGA 75
Query: 58 S---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW------HPTMDVLF 108
+ LAT ++ IW + V ++GH + + + +
Sbjct: 76 TSLQQRYLATGDFGGNLHIWNLEAPEM--PVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133
Query: 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-----STIWALSFNAKGDKLVSCSD 163
+ S D T+KVW D E G + + + ++N + + + D
Sbjct: 134 TGSRDGTVKVW-----DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188
Query: 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI----IASGAADDS 219
+ IK++ D+ M L + + S+ + R+ I + + + +
Sbjct: 189 NGDIKLF--DLRNMA----------LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGK 235
Query: 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
F D P+ EKAH V V+ P R L +A G + +W+
Sbjct: 236 FHVF----DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-26
Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 47/258 (18%)
Query: 42 TLEGHENEVKSVSWNASGTLLATCG----RDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
+G V W T G + ++E+ G + + + A+ +K
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-DLKLLR-EIEKAKPIKC 70
Query: 98 VQWH---PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI------WA 148
+ L + + + +W E + S GH I
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAP--------EMPVYSVKGHKEIINAIDGIGG 122
Query: 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT----IFSVH 204
L ++V+ S D T+K+W D ++ + G + R F
Sbjct: 123 LGIGEGAPEIVTGSRDGTVKVW--DPR-----QKDDPVANMEPVQGENKRDCWTVAFGNA 175
Query: 205 WSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP--GERR 261
+++E ++ +G + ++ F DL + L+ E V S+++
Sbjct: 176 YNQEERVVCAGYDNGDIKLF-----DLRNM-----ALRWETNIKNGVCSLEFDRKDISMN 225
Query: 262 LLASASDDGMIKIWELAN 279
L + S +G ++++
Sbjct: 226 KLVATSLEGKFHVFDMRT 243
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 19/98 (19%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIW-----------------EDVGGDYECVATL 43
H TV P + L TA +W V G + +
Sbjct: 258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317
Query: 44 EGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGN 80
+ S+ W+ L C D++V + V N
Sbjct: 318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 30/158 (18%)
Query: 133 QTISESNNGHSSTIWALSFNAKGDKLVSC----SDDLTIKIWGADITRMQSGDGYASWRH 188
Q I+ G + T++ + K V+ I+++ +Q GD +
Sbjct: 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLY-----EIQHGD----LKL 58
Query: 189 LCTISGYHD-RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246
L I + S + +A+G ++ + +L +M + K H
Sbjct: 59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW-----NLEAP---EMPVYSVKGH 110
Query: 247 DMDVNSVQW------SPGERRLLASASDDGMIKIWELA 278
+N++ G + + S DG +K+W+
Sbjct: 111 KEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPR 147
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLAS---ASDDGMIKIWELAN 279
+++ +K + V +W P + + A G+I+++E+ +
Sbjct: 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH 53
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 9e-44
Identities = 64/294 (21%), Positives = 125/294 (42%), Gaps = 50/294 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H +V +C + T + D +++ + + + L GH+ V ++ + A G +
Sbjct: 120 HMTSVITCL-QFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKY-AHGGI 175
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVW 119
L + D++V +W++ G C V +GH V+ + + + + + S DNT+ VW
Sbjct: 176 LVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 120 ----WAEDTDSDNWHCVQTISESNN----------GHSSTIWALSFNAKGDKLVSCSDDL 165
+ D H + + GH +++ +S + G+ +VS S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GNIVVSGSYDN 290
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV 224
T+ +W D+ +M+ L +SG H I+S + E S + D +++ +
Sbjct: 291 TLIVW--DVAQMKC---------LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIW- 337
Query: 225 ESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
DL +G L+ + H V ++ S + L SA+ DG I+ W+
Sbjct: 338 ----DLENG----ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN 380
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 4e-41
Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 65/300 (21%)
Query: 2 HTRTVR--SCAWSPSGKLLATASFDATTCIWE---------------------DVGGDYE 38
H TVR + K + T S D T +W+ +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV 98
V L GH V++VS + G ++ + D ++ +W+V +C+ +L GH +
Sbjct: 262 FVGVLRGHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYST 316
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
+ S S D TI++W D +N + T+ GH++ + L + L
Sbjct: 317 IYDHERKRCISASMDTTIRIW-----DLENGELMYTLQ----GHTALVGLLRLS--DKFL 365
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217
VS + D +I+ W D S +H + I+ SG+ +
Sbjct: 366 VSAAADGSIRGW--DANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGS-E 411
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + +L G K++ + SV + + L +A + E+
Sbjct: 412 NQFNIY-----NLRSG---KLVHANILKDADQIWSVNFKG---KTLVAAVEKDGQSFLEI 460
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-40
Identities = 58/292 (19%), Positives = 98/292 (33%), Gaps = 41/292 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
L+ W + TL GH V +
Sbjct: 77 KLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFV-PQRTTLRGHMTSVITCLQF-EDNY 134
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ T DK + +++ + + + L GH V +++ +L S S D T++VW
Sbjct: 135 VITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW-- 188
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALS--FNAKGDKLVSCSDDLTIKIWGADITRMQS 179
D C GH+ST+ L +V+ S D T+ +W
Sbjct: 189 ---DIKKGCCTHVF----EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 180 GDGYASWRHLCTISGY-----------HDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227
G L + H ++ +V S G I+ SG+ D+++ +
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW---- 295
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D+ +L H + S + ER+ SAS D I+IW+L N
Sbjct: 296 -DVAQMKCLYIL----SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN 341
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-26
Identities = 47/294 (15%), Positives = 95/294 (32%), Gaps = 50/294 (17%)
Query: 6 VRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 64
+ S S + K++ ++ + + + +L ++ L+
Sbjct: 36 INSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSF 95
Query: 65 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124
+ W + L+GH V + + + + D I+V+
Sbjct: 96 LENIFILKNWYNPKFV--PQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVY----- 147
Query: 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184
DS N + +S GH +WAL + A G LVS S D T+++W
Sbjct: 148 DSINKKFLLQLS----GHDGGVWALKY-AHGGILVSGSTDRTVRVWDI-----------K 191
Query: 185 SWRHLCTISGYHDRTI--FSVHWSREG-IIASGAADDSV----------------QFFVE 225
G H+ T+ + + I +G+ D+++ +
Sbjct: 192 KGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ Y + + H V +V S + S S D + +W++A
Sbjct: 251 LVFHTPEENPY--FVGVLRGHMASVRTV--SGHGNI-VVSGSYDNTLIVWDVAQ 299
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-43
Identities = 53/291 (18%), Positives = 101/291 (34%), Gaps = 36/291 (12%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
++ ++P +S + TT + + G A+ + S+ +AS
Sbjct: 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR 222
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVW 119
++ T +V + + + + + L+ H + V V +P D L + S D T+K+W
Sbjct: 223 MVVTGDNVGNVILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW 278
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
D + S H + A F+ G +L++ I+++ A
Sbjct: 279 -----DLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSA------- 325
Query: 180 GDGYASWRHLCTISGYHDR-----TIFSVHWSREG-IIASGAADDSVQFFVESKDD---- 229
+ W + + R T W +I G D +
Sbjct: 326 ----SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQ-WSPGERRLLASASDDGMIKIWELAN 279
+ DG S KM+ + ++S+ ++P LASA I IW
Sbjct: 382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT-LASAMGYH-ILIWSQQE 430
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 2e-40
Identities = 34/290 (11%), Positives = 79/290 (27%), Gaps = 32/290 (11%)
Query: 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-G 59
R S AW P+ +A S +W D G + + +N
Sbjct: 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ + + + GN + + + ++ + + +
Sbjct: 178 NQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQ 178
+ D + + H + ++ N D L + S D T+KIW +
Sbjct: 237 ---NMDG---KELWNL----RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL-----R 281
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV--------QFFVESKDD 229
G AS H + + +S +G + + + +
Sbjct: 282 QVRGKAS---FLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ +K ++ V P + + I +++ +
Sbjct: 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-37
Identities = 38/284 (13%), Positives = 96/284 (33%), Gaps = 40/284 (14%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGD----YECVATLEGHENEVKSVSWNASGT- 60
RS + L AS+ + + Y + + S++W+ +
Sbjct: 74 CRSIVRTLHQHKLGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPS 133
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV 118
+A + + +W ++ G + ++++P + ++ S + T ++
Sbjct: 134 TVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTRL 191
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
D + ++ + S + + +L +A +V+ + + + D
Sbjct: 192 Q---DFKG---NILRVFASS-DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD----- 239
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY 236
G + L + H + + V + +A+ + D +V+ + DL
Sbjct: 240 -G------KELWNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIW-----DLRQV-RG 285
Query: 237 KMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
K H VN+ +SP G L + I+++ +
Sbjct: 286 KASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQ 327
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 8e-12
Identities = 23/201 (11%), Positives = 58/201 (28%), Gaps = 35/201 (17%)
Query: 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW----WAEDTDSDNWHCVQTISESNN 140
+ + + + ++ P L + + + W ++I + +
Sbjct: 23 IVLRPRNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLH 82
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H + + + S T+ S+R L + DR
Sbjct: 83 QHKL---GRASWPSVQQGLQQSFLHTLD----------------SYRILQKAAP-FDRRA 122
Query: 201 FSVHWSREG--IIASGAADDSVQFF-VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
S+ W +A G+ + + KD K K + ++++P
Sbjct: 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--------KPTFIKGIGAGGSITGLKFNP 174
Query: 258 GERRLLASASDDGMIKIWELA 278
++S +G ++ +
Sbjct: 175 LNTNQFYASSMEGTTRLQDFK 195
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-42
Identities = 57/287 (19%), Positives = 103/287 (35%), Gaps = 41/287 (14%)
Query: 8 SCAWSPSGKLLATASFDATTCI---WEDVGGDYECVATLEGHENEVKSVSWN-ASGTLLA 63
CA +P L + + G + V + GH V ++W + ++A
Sbjct: 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA 98
Query: 64 TCGRDKSVWIWEVMPG----NEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKV 118
+ D +V +WE+ G E V L+GH + V +V WHPT +VL S DN I V
Sbjct: 99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
W D V T+ + H TI+++ ++ G + + D +++
Sbjct: 159 W-----DVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP------ 205
Query: 179 SGDGYASWRHLCTISGYHDRT-IFSVHWSREG-IIASGAADDSVQFFVESKDDLI---DG 233
+ H+ T + EG I+ +G F + + D
Sbjct: 206 -----RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG--------FSRMSERQVALWDT 252
Query: 234 PSYKMLLKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ L ++ V + P + D I+ +E+ +
Sbjct: 253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-28
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASG 59
HT+ V AW P+ + +L +A D +W DVG G + H + + SV W+ G
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVW-DVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK--MVQWHPTMDVL---FSCSYDN 114
L+ T RDK V + E G V+ + + + +L FS +
Sbjct: 189 ALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIW 170
+ +W D+ + ++ E SS + F+ + + + D +I+ +
Sbjct: 246 QVALW-----DTKHLEEPLSLQEL--DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-22
Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 36/245 (14%)
Query: 48 NEVKSVSWNASGT---LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104
+ + N A+ G V G + V ++ GH V + W P
Sbjct: 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGK-TGRVDKNVPLVCGHTAPVLDIAWCPHN 93
Query: 105 D-VLFSCSYDNTIKVWWAED--TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVS 160
D V+ S S D T+ VW D V T+ GH+ + ++++ L+S
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE----GHTKRVGIVAWHPTAQNVLLS 149
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADD 218
D I +W D+ + + T+ H TI+SV WSR+G +I + D
Sbjct: 150 AGCDNVILVW--DVGTGAA---------VLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 219 SVQFFVESKDDLIDGPSYKMLLKKEKAHD-MDVNSVQWSPGERRLL--ASASDDGMIKIW 275
V+ +I+ ++ +K++ H+ + + L S + + +W
Sbjct: 199 RVR--------VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 276 ELANT 280
+ +
Sbjct: 251 DTKHL 255
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-21
Identities = 26/175 (14%), Positives = 56/175 (32%), Gaps = 17/175 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS--WNASG 59
H T+ S WS G L+ T+ D + E G VA + + V + + G
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSEG 232
Query: 60 TLLATCG---RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNT 115
+L T ++ V +W+ E + V + + P ++++ D++
Sbjct: 233 KILTTGFSRMSERQVALWDTKHLEE-PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
I+ + + SS + + + + +
Sbjct: 292 IRYFEITSE--------APFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFY 338
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 21/156 (13%)
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRH 188
C + + S S + N K L+ S + T ++
Sbjct: 23 QCYEDVRVSQTTWDSGF--CAVNPKFMALICEASGGGAFLVLPLGKTG-------RVDKN 73
Query: 189 LCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKML---LKKE 243
+ + G H + + W +IASG+ D +V + ++ DG L +
Sbjct: 74 VPLVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVW-----EIPDGGLVLPLREPVITL 127
Query: 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ H V V W P + +L SA D +I +W++
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 5/109 (4%), Positives = 26/109 (23%), Gaps = 10/109 (9%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ V + P + D++ + ++ + + L ++
Sbjct: 266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYF-EITSEAPFLHYLSMFSSKESQRGMGYMPK 324
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 109
+ + +++ + + + L+
Sbjct: 325 RGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLF--------QEDLYP 365
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 1e-41
Identities = 50/274 (18%), Positives = 95/274 (34%), Gaps = 35/274 (12%)
Query: 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 74
G + ++ L GHE + V +N G LL +C +D S +W
Sbjct: 2 GSSHHHHHHSSGENLYFQGSH--MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW 59
Query: 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT 134
+ G E + L GH + + + S D +IK+W D N CV T
Sbjct: 60 YSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW-----DVSNGQCVAT 111
Query: 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITR---MQSGDGYASW 186
+ + F+ G+ ++ D++ +I I+ +I R +
Sbjct: 112 W-----KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY--EIERDSATHELTKVSEE 164
Query: 187 RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245
I+ WS +G I +G D + D + +
Sbjct: 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS--------KYDVSNNYEYVDSIDL 216
Query: 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
H+ ++ +Q+SP + ++S D + +++
Sbjct: 217 HEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST 249
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-41
Identities = 45/305 (14%), Positives = 107/305 (35%), Gaps = 60/305 (19%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H R + ++ G LL + S D++ +W + G E + TL+GH + S+ +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-----YDNTI 116
T D S+ +W+V G +CV+ + VK V++ P + + +I
Sbjct: 89 CVTGSADYSIKLWDVSNG---QCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 117 KVWWAEDTDSDNWHCVQTISE---------SNNGHSSTIWALSFNAKGDKLVSCSDDLTI 167
++ + + D+ +++ + ++ KG +++ D I
Sbjct: 145 NIY---EIERDS--ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199
Query: 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 226
+ + ++ +I H+++I + +S + + + D +
Sbjct: 200 SKYDV-----SNNY-----EYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSFLV--- 245
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GER------------RLLASASDDGMIK 273
D+ +LKK + +N+ +P E ++ +
Sbjct: 246 --DVSTL----QVLKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298
Query: 274 IWELA 278
+
Sbjct: 299 FYHKI 303
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 9e-41
Identities = 49/303 (16%), Positives = 92/303 (30%), Gaps = 54/303 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
HT T+ S K T S D + +W+ G +CVAT + VK V ++ G
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QCVATWKSP-VPVKRVEFSPCGNY 129
Query: 62 LATC-----GRDKSVWIWEVMPGNE--------FECVSVLQGHAQD--VKMVQWHPTMDV 106
S+ I+E+ + E + + H + W
Sbjct: 130 FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY 189
Query: 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 166
+ + D I + + V +I + H +I + F+ ++ S D
Sbjct: 190 IIAGHKDGKISKYDVSNNYE----YVDSI----DLHEKSISDMQFSPDLTYFITSSRDTN 241
Query: 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225
+ ++ + L D + + + I G ++
Sbjct: 242 SFLVDV-----------STLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTT 288
Query: 226 SKD---------DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
S + I + + H +N+V SP AS +DG I++
Sbjct: 289 SANEGKFEARFYHKIFEEEIGRV----QGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHH 343
Query: 277 LAN 279
Sbjct: 344 FEK 346
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 7e-12
Identities = 10/102 (9%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY------------ECVATLEGHENE 49
+ + +P + + + + E + ++GH
Sbjct: 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP 317
Query: 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH 91
+ +V+ + GT A+ G D + +
Sbjct: 318 LNTVAISPQGTSYASGGEDGFIRLHHFEKS---YFDFKYDVE 356
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-41
Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 38/292 (13%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ ++ L +S T + + G + A + + V + S
Sbjct: 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ 176
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVW 119
+LAT + + + + + + H V +++P D L + S D T+K+W
Sbjct: 177 MLATGDSTGRLLLLGL----DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLW 232
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCSDDLTIKIWGADITRMQ 178
D N + + H + A FN KL++ I+++ +
Sbjct: 233 -----DLRNIKDKNSYI-AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS------ 280
Query: 179 SGDGYASWRHLCTISGYHDRT-----IFSVHWSREG-IIASGAADDSVQFFVESKD---D 229
W I + R W +I +G D + + D
Sbjct: 281 -----YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD--QLLLNDKRTID 333
Query: 230 LIDGPSYKMLLKKEKAHDMD-VNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ D S ++ + + ++ ++SP +LAS I IW +T
Sbjct: 334 IYDANSGGLVHQLRDPNAAGIISLNKFSPT-GDVLASGM-GFNILIWNREDT 383
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-39
Identities = 34/292 (11%), Positives = 86/292 (29%), Gaps = 40/292 (13%)
Query: 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASG 59
R V S W P+ +A S +W+ + G + + + +N +
Sbjct: 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT 131
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
L + + + G+ + + V + +L + + +
Sbjct: 132 NQLFVSSIRGATTLRDF-SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQ 178
D H + H + + FN + D L+ + S D T+K+W D+ ++
Sbjct: 191 ---GLDG---HEIFKEK----LHKAKVTHAEFNPRCDWLMATSSVDATVKLW--DLRNIK 238
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY 236
H++ + + +++ + + + ++ + D
Sbjct: 239 DK------NSYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVY-----SSYDWSKP 286
Query: 237 KMLLKKEKAHDMDVN--SVQWSPGERRL--------LASASDDGMIKIWELA 278
++ + W P + +D I I++
Sbjct: 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDAN 338
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-37
Identities = 34/284 (11%), Positives = 83/284 (29%), Gaps = 35/284 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
T + S G+ + I + T + V S+ W+ +
Sbjct: 28 QTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSY--KLHRTASPFDRRVTSLEWHPTH 85
Query: 60 -TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIK 117
T +A + + +W+ N+ G + ++++ + LF S
Sbjct: 86 PTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
+ D + + + L + + + G D +
Sbjct: 145 LR---DFSGSVIQVFAKT----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI 197
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPS 235
H + ++ ++A+ + D +V+ + DL +
Sbjct: 198 FKEKL-------------HKAKVTHAEFNPRCDWLMATSSVDATVKLW-----DLRNIKD 239
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
K E H+ VN+ ++P + L + I+++ +
Sbjct: 240 -KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 18/162 (11%), Positives = 48/162 (29%), Gaps = 23/162 (14%)
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS--CSDDLTIKIWGADITRMQ 178
D + +T + G +S + + ++ G + + I ++
Sbjct: 7 HVDENLYFQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIR-----SLK 61
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY 236
S + + DR + S+ W +A G+ + + D
Sbjct: 62 SYKLHRTAS-------PFDRRVTSLEWHPTHPTTVAVGSKGGDIILW-----DYDVQN-- 107
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
K + + ++++ L +S G + + +
Sbjct: 108 KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-40
Identities = 47/287 (16%), Positives = 91/287 (31%), Gaps = 40/287 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATAS--FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
+ +W G+ L D G + + GH + + S
Sbjct: 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGEVSGHSQRINACHLKQSR 172
Query: 60 -TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIK 117
T G D SV ++ P V+ V++ P + + + + D I
Sbjct: 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
+ D + ++ I + I+ALS+ K + D TI++W
Sbjct: 233 CF-----DGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDV----- 281
Query: 178 QSGDGYASWRHLCTISGY---HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGP 234
+ + + + V + G I S + D ++ F+ +L
Sbjct: 282 ------TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY-----ELGHDE 330
Query: 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
K + H+ + ++ +P L S S DG I W ++
Sbjct: 331 VLKTI----SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH 368
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 43/293 (14%)
Query: 2 HTRTVRSCAWSPSGKLLATASFD-ATTCIWEDVGGDYECVATLEGHE-NEVKSVSW--NA 57
++ P+ +A A +D V GH + V +V +
Sbjct: 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 76
Query: 58 SGTLLATCGRDKSVWIWEVMPG-----NEFECVSVLQGHAQDVKMVQWHP--TMDVLFSC 110
L + V +W E S Q A + + W +
Sbjct: 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKI 169
DN D+ + + +S GHS I A + ++ DD ++
Sbjct: 137 GRDNFGVFI-----SWDSGNSLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGSVVF 187
Query: 170 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESK 227
+ G + T + V +S + + + +D + F
Sbjct: 188 Y--------QGPPFKFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSDRKISCF---- 234
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER--RLLASASDDGMIKIWELA 278
D G K + + V ++ + A+ D I++W++
Sbjct: 235 -DGKSGEFLKYI----EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 7e-37
Identities = 43/293 (14%), Positives = 92/293 (31%), Gaps = 42/293 (14%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGG------DYECVATLEGHENEVKSV 53
+ V + +SP + L + +W + + + + +
Sbjct: 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 122
Query: 54 SWNASGTLLATC--GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSC 110
SW+ G L GRD GN + + GH+Q + + + +
Sbjct: 123 SWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTV 179
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKI 169
D ++ + + + + S + + F+ G+ +++ D I
Sbjct: 180 GDDGSVVFY-----QGPPFKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 170 WGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREGIIASGAADDSVQFFVES 226
+ DG S L I IF++ W A+ AD +++ +
Sbjct: 234 F----------DG-KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW--- 279
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D+ + ++ V + R + S S DG + +EL +
Sbjct: 280 --DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR--IISLSLDGTLNFYELGH 328
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 45/281 (16%), Positives = 88/281 (31%), Gaps = 54/281 (19%)
Query: 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
V+ ++ S + AT DAT +W+ TL+ + + V A+
Sbjct: 248 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307
Query: 59 G-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
G + + D ++ +E+ E + + GH + + + +P L S SYD I
Sbjct: 308 GNGRIISLSLDGTLNFYELGHD---EVLKTISGHNKGITALTVNP----LISGSYDGRIM 360
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
W + HS+ I +L +K + S S D T+K+ G
Sbjct: 361 EWSSSSMHQ--------------DHSNLIVSLDN-SKAQEYSSISWDDTLKVNGIT---- 401
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237
+ +G A DD + ++ +
Sbjct: 402 ---------------KHEFGSQPKVASANNDGFTAVLTNDDDLL--------ILQSFTGD 438
Query: 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
++ S+ + L + + K+ +L
Sbjct: 439 IIKSVRLNSPGSAVSLSQNYVAVG-LEEGNTIQVFKLSDLE 478
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 1e-35
Identities = 33/288 (11%), Positives = 83/288 (28%), Gaps = 63/288 (21%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + + +P L + S+D W + H N + S+ +
Sbjct: 338 HNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDN-SKAQE 385
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
++ D ++ + + K+ + + D+ + + +
Sbjct: 386 YSSISWDDTLKVNGITKH----------EFGSQPKVASANND-GFTAVLTNDDDLLILQS 434
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
++++ + +LS N L + K+ +++
Sbjct: 435 FT-----GDIIKSVRL---NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF----- 481
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
+ + S IA+G + + D S ++
Sbjct: 482 ---------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLY--------DLQSREVKT 524
Query: 241 KKEKAHDMDVNSVQWSPGERR---------LLASASDDGMIKIWELAN 279
+ +N++ W P E+ L+A+ S D I I+ +
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-31
Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 58/288 (20%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ + S S + ++ S+D T + T ++ K S N G
Sbjct: 371 HSNLIVSLDNSK-AQEYSSISWDDTLKVNG---------ITKHEFGSQPKVASANNDGFT 420
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQWHPTMDVLFSCSYDNTIKVWW 120
D + I + G + + ++ ++ + + L + K+
Sbjct: 421 AVLTN-DDDLLILQSFTG---DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS- 475
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D + ++T + +S + + + I ++
Sbjct: 476 ----DLEVSFDLKT------PLRAKPSYISISPSETYIAAGDVMGKILLYDL-------- 517
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-----------IIASGAADDSVQFFVESKDD 229
S + + I ++ W ++A+G+ D ++ +
Sbjct: 518 ---QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY-----S 569
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ ++K AH VN++ W L S+ D IK W +
Sbjct: 570 VKRPMK---IIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV 612
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 7e-31
Identities = 43/244 (17%), Positives = 78/244 (31%), Gaps = 32/244 (13%)
Query: 45 GHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQWHP 102
N +S++ + +A G+ V + ++ V GH V V++ P
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 103 TMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-- 158
L S + VW D ++ + + I +S++ +G +L
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWT-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAA 216
V D D S L +SG H + I + H + +
Sbjct: 134 VGEGRDNFGVFISWD-----------SGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGD 181
Query: 217 DDSVQFFVESKDDLIDGPSYK--MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274
D SV F+ GP +K + V V++SP + + D I
Sbjct: 182 DGSVVFY--------QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Query: 275 WELA 278
++
Sbjct: 234 FDGK 237
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-36
Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 40/290 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--G 59
HT V WS G + TAS D T +W D+ + + H+ VK++ W +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMW-DLSSN--QAIQIAQHDAPVKTIHWIKAPNY 141
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ + T DK++ W+ N + VLQ + +P M V+ + +
Sbjct: 142 SCVMTGSWDKTLKFWDTRSSN---PMMVLQLPERCYCADVIYP-MAVVATAERGLIVYQL 197
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSF----NAKGDKLVSCSDDLTIKIWGADIT 175
+ + + S ++ K S + + I +
Sbjct: 198 ENQPS-----EFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN-P 247
Query: 176 RMQSGDGYA----SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230
+ D + T + + + + +A+ +D F+
Sbjct: 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW------- 300
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
D + + LK + D +++ ++ G + A AS K E N
Sbjct: 301 -DKDA-RTKLKTSEQLDQPISACCFNHNG--NIFAYASSYDWSKGHEFYN 346
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-34
Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 43/294 (14%)
Query: 2 HTRTVRSCAWSP---SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
++ ++SP G L S+ WE + H V V W+
Sbjct: 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD 97
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTI 116
G+ + T DK+ +W++ + H VK + W + + + S+D T+
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQA----IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
K W D+ + + + + + + + L + +
Sbjct: 154 KFW-----DTRSSNPMMVL----QLPER-CYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-----IIASGAADDSVQF-FVESKDDL 230
+ S V ++ A G+ + V ++ +
Sbjct: 204 FRR-----------IESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251
Query: 231 IDGPSYK-----MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D ++K VN + + P LA+ DG W+
Sbjct: 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDA 304
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 51/283 (18%)
Query: 3 TRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW---NAS 58
+ + + SG + +A+ D + + + ++ + +S+
Sbjct: 2 SLFGTTSGFGTSGTSMFGSATTDNHNPMKD--------IEVTSSPDDSIGCLSFSPPTLP 53
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
G L V WEV + Q H V V W +F+ S D T K+
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPK-AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITR 176
W D S+ I+ H + + + + +++ S D T+K W
Sbjct: 113 W---DLSSNQ---AIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW-----D 157
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD-DLIDGPS 235
+S + + +R + ++A+ V +
Sbjct: 158 TRSS------NPMMVLQL-PERCYCADVIYPMAVVATAERGLIV------YQLENQPSE- 203
Query: 236 YKMLLKKEKAHDMDVNSVQWSP---GERRLLASASDDGMIKIW 275
+ E V + A S +G + I
Sbjct: 204 ---FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 42/180 (23%)
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF---NAKGDKLVSCS 162
+ S + DN + E + +I LSF G+ L++ S
Sbjct: 17 MFGSATTDNHNPMKDI---------------EVTSSPDDSIGCLSFSPPTLPGNFLIAGS 61
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQ 221
++ W + H + V WS +G + + + D + +
Sbjct: 62 WANDVRCWEVQDSGQTIPK---------AQQM-HTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW--SPGERRLLASASDDGMIKIWELAN 279
+ DL + ++ HD V ++ W +P + + S D +K W+ +
Sbjct: 112 MW-----DLSSNQAIQI-----AQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRS 160
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 20/153 (13%)
Query: 2 HTRTVRSCAWSPSGK----LLATASFDATTCIWE-DVGGDYECVATLEGHENE------- 49
R A + A S + I + + T + H +
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270
Query: 50 -----VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104
V ++++ LAT G D W+ + + Q + ++
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISACCFNHNG 327
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137
++ S + K + N+ ++ +E
Sbjct: 328 NIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE 360
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
V A+ P LAT D W+ + T E + + + +N +G +
Sbjct: 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--TKLKTSEQLDQPISACCFNHNGNI 329
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 96
A E + + L+ A+++K
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYI-FLRNAAEELK 363
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 19/83 (22%)
Query: 202 SVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-- 257
+ + G + S D+ KD ++ + D + + +SP
Sbjct: 7 TSGFGTSGTSMFGSATTDNHNP----MKD-----------IEVTSSPDDSIGCLSFSPPT 51
Query: 258 GERRLLASASDDGMIKIWELANT 280
L + S ++ WE+ ++
Sbjct: 52 LPGNFLIAGSWANDVRCWEVQDS 74
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-31
Identities = 41/286 (14%), Positives = 107/286 (37%), Gaps = 27/286 (9%)
Query: 5 TVRSCAWSPSGKLLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNA-SGTL 61
+ PS LL S+D + +++ + + + +L +++ + ++ +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQ 71
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTMDVLFSCSYDNTIKVWW 120
+ + +++ L + ++ + + D L + S+D I+V
Sbjct: 72 IYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI- 127
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIW--ALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
D N+ ++ N +++ + + + +L+ ++ ++ + + +
Sbjct: 128 ----DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF--RLPLCE 181
Query: 179 SGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYK 237
+ + Y R + + +EG +S +V+FF + DD +
Sbjct: 182 D----DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 238 MLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ D + VNS+++SP + L +A DG+I W L
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQT 282
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-20
Identities = 33/290 (11%), Positives = 79/290 (27%), Gaps = 31/290 (10%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NASG 59
+ + C + + + + + +G L +E +
Sbjct: 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS--PSFQALTNNEANLGICRICKYGD 112
Query: 60 TLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDV----LFSCSYDN 114
L D + + + G+ V L + VK + TMD L ++
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF--TMDTNSSRLIVGMNNS 170
Query: 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD- 173
++ + E + + + S D + + D
Sbjct: 171 QVQWF-----RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225
Query: 174 -ITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230
S +A H + + + S+ +S + + +D + +
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW------- 278
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ + K + K ++ V + S +L A+ D K +
Sbjct: 279 -NLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATSDDTFKTNAAIDQ 324
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 9e-13
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 20/141 (14%)
Query: 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196
+ I + L+ S D ++ ++ D + ++ D S R+
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRY-------- 55
Query: 197 DRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254
+ ++ I G + DLI PS++ L ++ ++ +
Sbjct: 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKV-----DLIGSPSFQALTN----NEANLGICR 106
Query: 255 WSPGERRLLASASDDGMIKIW 275
L +AS DG+I++
Sbjct: 107 ICKYGDDKLIAASWDGLIEVI 127
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
I + ++ + D S+ + D + + L + + + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVY------KFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 258 GERRLLASASDDGMIKIWELANT 280
+ + G I +L +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGS 89
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-28
Identities = 44/326 (13%), Positives = 90/326 (27%), Gaps = 76/326 (23%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWE----DVGGDYECVATLEGHENEVKSVSWN 56
++ S A SP L T S IW VG Y T + V ++
Sbjct: 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI 120
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSV-------------LQGHAQDVKMVQWHP- 102
+ A +D + + +V + V + V+M +
Sbjct: 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180
Query: 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+L + + + + ++ D +Q I N+ + ++ + + L+ +
Sbjct: 181 EKSLLVALTNLSRVIIF-----DIRTLERLQII--ENSPRHGAVSSICIDEECCVLILGT 233
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-----IIASGAAD 217
I IW DI + + S I V + I+ G++
Sbjct: 234 TRGIIDIW--DIRFNVL---------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL--------------- 262
+ + + + G D + + P E+ L
Sbjct: 283 TFLTIW-----NFVKG----HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333
Query: 263 ---------LASASDDGMIKIWELAN 279
L + I ++ L
Sbjct: 334 TISVSNDKILLTDEATSSIVMFSLNE 359
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-24
Identities = 45/338 (13%), Positives = 94/338 (27%), Gaps = 73/338 (21%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW--------------EDVGGDYECVATLEGHE 47
+ TV P+ A +S D + + +E
Sbjct: 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169
Query: 48 NEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQG--HAQDVKMVQWHPTM 104
V+ ++ +LL V I+++ E + +++ V +
Sbjct: 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL---ERLQIIENSPRHGAVSSICIDEEC 226
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSD 163
VL + I +W D +++ S ++ + + F K +V S
Sbjct: 227 CVLILGTTRGIIDIW-----DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281
Query: 164 DLTIKIWGADITRMQ---------------------------SGDGYASWRHLCT----- 191
+ IW + + + G S L T
Sbjct: 282 KTFLTIW--NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSN 339
Query: 192 ----ISGYHDRTI--FSVHWSREGIIASGAADDSVQF----FVESKDDLI--DGPSYKML 239
++ +I FS++ + S F + L+ +
Sbjct: 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS 399
Query: 240 LKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWE 276
+ H +NS+ E LL + + G+I I++
Sbjct: 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 7e-21
Identities = 35/251 (13%), Positives = 81/251 (32%), Gaps = 28/251 (11%)
Query: 42 TLEGHENEVK----SVSWNASGTLLATCGRDKSVWIWEVMPGN-EFECVSVLQGHAQD-V 95
EG ++ + G + + + GN + ++ L + + +
Sbjct: 8 HGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEI-VRSPNMGNLRGKLIATLMENEPNSI 66
Query: 96 KMVQWHPTMDVLF-SCSYDNTIKVW-WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153
P + S IK+W E + + T SST+ ++
Sbjct: 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSSTVTQITMIP 121
Query: 154 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS----GYHDRTIFSVHWSREG 209
D S D I + + + +S + + + I+ G ++ + + E
Sbjct: 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181
Query: 210 --IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 267
++ + V F D+ +++ + V+S+ E +L +
Sbjct: 182 KSLLVALTNLSRVIIF-----DIRTLERLQII--ENSPRHGAVSSICIDE-ECCVLILGT 233
Query: 268 DDGMIKIWELA 278
G+I IW++
Sbjct: 234 TRGIIDIWDIR 244
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-28
Identities = 43/322 (13%), Positives = 98/322 (30%), Gaps = 60/322 (18%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------DYE 38
H + S + + S D +W++ +
Sbjct: 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 72
Query: 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV 98
+ V + S++ D++ + S ++ H+ +
Sbjct: 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWA--L 127
Query: 99 QWHPTMDVLF-----SCSYDNTIKVW---------WAEDTDSDNWHCVQTISESNNGHSS 144
+W + D L + T +W + + +Q ES S
Sbjct: 128 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187
Query: 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204
++ + +G + + ++ T++I + + ++ ++ + +I SV
Sbjct: 188 FATSVDISERG-LIATGFNNGTVQIS-----ELSTLRPLYNFESQHSMIN-NSNSIRSVK 240
Query: 205 WSREG-IIASGAADDSVQF-------FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
+S +G ++A +S F E L E AH V S+ ++
Sbjct: 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300
Query: 257 PGERRLLASASDDGMIKIWELA 278
L SA DG ++ W++
Sbjct: 301 D-SGETLCSAGWDGKLRFWDVK 321
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 39/268 (14%)
Query: 40 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
+ H+ ++ SVS + +C D + +W+ + + ++ V
Sbjct: 9 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHKSG 64
Query: 100 WH--PTMDVLFSCSYDNTIKVWWAED-----TDSDNWHCVQTISESNNG------HSSTI 146
H + + +++ + + + + +
Sbjct: 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 124
Query: 147 WALSFNAKGDK-----LVSCSDDLTIKIWGADITRMQSGDGYASW-------RHLCTISG 194
WAL + A D+ LV+ T IW +S +W + +
Sbjct: 125 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 184
Query: 195 YHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLIDGPSYKMLLKKEKAHDMDVNSV 253
+ SV S G+IA+G + +VQ + + L + S + + + SV
Sbjct: 185 -PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSM----INNSNSIRSV 239
Query: 254 QWSPGERRLLASASDD---GMIKIWELA 278
++SP LLA A D G I ++E
Sbjct: 240 KFSPQ-GSLLAIAHDSNSFGCITLYETE 266
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 40/304 (13%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW---NAS 58
V + ++S D T + + + ++ H
Sbjct: 80 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLD--LLDSDMKKHSFWALKWGASNDRLL 137
Query: 59 GTLLATCGRDKSVWIWEVMPGNE---------------FECVSVLQGHAQDVKMVQWHPT 103
L + +IW+ P + V +Q V
Sbjct: 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE- 196
Query: 104 MD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
++ + + T+++ + + S +S++I ++ F+ +G L
Sbjct: 197 -RGLIATGFNNGTVQIS---ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252
Query: 163 DDLT---IKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD 217
D + I ++ + R+ S H + S+ ++ G + S D
Sbjct: 253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG---MIKI 274
++F+ D+ L +++ + + LA + K
Sbjct: 313 GKLRFW-----DVKTKERITTLNMHCDDIEIEEDILAVDEHGDS-LAEPGVFDVKFLKKG 366
Query: 275 WELA 278
W
Sbjct: 367 WRSG 370
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-25
Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 41/222 (18%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWN 56
++ S S G L+AT + T I ++ ++E ++ + N ++SV ++
Sbjct: 185 PSQFATSVDISERG-LIATGFNNGTVQIS-ELSTLRPLYNFESQHSMINNSNSIRSVKFS 242
Query: 57 ASGTLLATCGRDKS---VWIWEV----------MPGNEFECVSVLQGHAQDVKMVQWHPT 103
G+LLA S + ++E +P + + H+ V + ++ +
Sbjct: 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302
Query: 104 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW----ALSFNAKGDKLV 159
+ L S +D ++ W D + T+ N H I L+ + GD L
Sbjct: 303 GETLCSAGWDGKLRFW-----DVKTKERITTL----NMHCDDIEIEEDILAVDEHGDSLA 353
Query: 160 SCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
D+ G SG G LC + DR+I
Sbjct: 354 EPGVFDVKFLKKGWR-----SGMGADLNESLCCVC--LDRSI 388
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-19
Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 49/189 (25%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATT---CIWEDVGGDYECVATLE-------------G 45
++ ++RS +SP G LLA A + ++E G E + +L
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFA 289
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM----VQWH 101
H + V S+S+N SG L + G D + W+V E ++ L H D+++ +
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVD 346
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
D L + + + + L
Sbjct: 347 EHGDSLAEPGVFDVKFLKKGWRSG------------------------MGADLNESLCCV 382
Query: 162 SDDLTIKIW 170
D +I+ +
Sbjct: 383 CLDRSIRWF 391
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 95.2 bits (236), Expect = 2e-22
Identities = 38/292 (13%), Positives = 76/292 (26%), Gaps = 45/292 (15%)
Query: 6 VRSCAWSPSGKLLATA------SFDATT-------CIWEDVGGDYECVATLEGHENEVKS 52
+++ S G L+ SF + W D + E + +S
Sbjct: 7 LQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQS 66
Query: 53 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCS 111
L + D +P ++ ++ L
Sbjct: 67 SENENENKKLKSNKGDSIKRTAAKVPSPG----LGAPPIYSYIRNLRLTSDESRLIACAD 122
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
D ++ V+ D D + + ++ S A+S ++ +
Sbjct: 123 SDKSLLVF---DVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDTTVIIADKFGDVYSI- 176
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----IIASGAADDSVQFFVESK 227
I G H + VH ++ I + D+ ++
Sbjct: 177 ------DINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIK------ 223
Query: 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ P ++ K H V+S+ L SA D I W+
Sbjct: 224 --ISHYPQCFIVDKWLFGHKHFVSSICCGKDYL--LLSAGGDDKIFAWDWKT 271
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 8e-19
Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 24/224 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-T 60
+ +S K L + D+ V + ++++ +
Sbjct: 60 KEQQGQSSENENENKKLKSNKGDSIKRTAAKVPS---PGLGAPPIYSYIRNLRLTSDESR 116
Query: 61 LLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
L+A DKS+ +++V ++ + ++ + + +
Sbjct: 117 LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK---LVSCSDDLTIKIWGADITR 176
D ++ + E GH S + + D +++ D IKI
Sbjct: 177 -----DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS------ 225
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 220
+ + G H + S+ ++ ++ S DD +
Sbjct: 226 ----HYPQCFIVDKWLFG-HKHFVSSICCGKDYLLLSAGGDDKI 264
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 9e-19
Identities = 29/241 (12%), Positives = 66/241 (27%), Gaps = 27/241 (11%)
Query: 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM----D 105
++++ + G+L+ + ++ N +E + D +Q
Sbjct: 7 LQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAG---KWSDDFDKIQESRNTTAKEQ 62
Query: 106 VLFSCSYDNTIKVWWAEDTDS--DNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCS 162
S +N K + DS V + S I L + +L+
Sbjct: 63 QGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD 122
Query: 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQ 221
D ++ ++ D T + + ++ + + + V
Sbjct: 123 SDKSLLVFDVDKTSKNVLKLRKRF--------CFSKRPNAISIAEDDTTVIIADKFGDVY 174
Query: 222 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP--GERRLLASASDDGMIKIWELAN 279
D+ P K + H + V + + ++ D IKI
Sbjct: 175 SI-----DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229
Query: 280 T 280
Sbjct: 230 C 230
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 2e-13
Identities = 29/206 (14%), Positives = 61/206 (29%), Gaps = 35/206 (16%)
Query: 2 HTRTVRSCAWSPSG---KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 58
H + + + T+ D I + L GH++ V S+
Sbjct: 194 HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKWLFGHKHFVSSICCGKD 252
Query: 59 GTLLATCGRDKSVWIWEVMPGNE---FECVSVLQGHAQDV-------------------- 95
LL + G D ++ W+ G F+ S+++ + D
Sbjct: 253 Y-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311
Query: 96 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155
K+++ V F I + + + Q I+ N + +LS +
Sbjct: 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN-----VISLSAH--N 364
Query: 156 DKLVSCSDDLTIKIWGADITRMQSGD 181
D+ D+ + + +
Sbjct: 365 DEFQVTLDNKESSGVQKNFAKFIEYN 390
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 1e-21
Identities = 43/311 (13%), Positives = 99/311 (31%), Gaps = 53/311 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV---------GGDYECVATLEGH------ 46
+ + ++ SG+LLAT I++ G+Y +T + H
Sbjct: 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDY 86
Query: 47 ------ENEVKSVSW--NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV 98
E ++ + W + DK++ +W++ ++ L+ +
Sbjct: 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP 146
Query: 99 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158
T+ V D ++ + + N H+ I ++S N+ +
Sbjct: 147 TTVTTLRVPVFRPMDLMVEAS-----------PRRIFA---NAHTYHINSISINSDYETY 192
Query: 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAA 216
+S +DDL I +W +IT + I + + ++
Sbjct: 193 LS-ADDLRINLWHLEIT----DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247
Query: 217 DDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269
+++ + L + P ++ V++S R ++ D
Sbjct: 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM--TRDY 305
Query: 270 GMIKIWELANT 280
+K+W+L
Sbjct: 306 LSVKVWDLNME 316
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 5e-18
Identities = 42/282 (14%), Positives = 83/282 (29%), Gaps = 52/282 (18%)
Query: 19 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78
A D C + G + V + + +V +N SG LLAT + V I++
Sbjct: 4 AGGGNDIQWCFSQVKGAVDDDV----AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQ 59
Query: 79 GN--------EFECVSVLQGHAQD------------VKMVQWHPTMD--VLFSCSYDNTI 116
N E+ S Q H + + ++W P + + D TI
Sbjct: 60 ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
K+W + + + + V DL ++
Sbjct: 120 KLWKISE------RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEAS------ 167
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLIDGPS 235
+ H I S+ + + A D + + +E D +
Sbjct: 168 -----------PRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVD 216
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
K + + + ++ P +S G I++ ++
Sbjct: 217 IK--PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 1e-16
Identities = 35/294 (11%), Positives = 81/294 (27%), Gaps = 28/294 (9%)
Query: 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVA-TLEGHENEVKSVSWNAS 58
+ W P ++ D T +W+ D L+ + + + +
Sbjct: 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
+ D V H + + + + S + D I +
Sbjct: 152 LRVPVFRPMDLMVEASPRRIFAN--------AHTYHINSISINSDYETYLS-ADDLRINL 202
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIW-----GA 172
W E TD ++ V + + I A F+ S TI++
Sbjct: 203 WHLEITDRS-FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261
Query: 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASG------AADDSVQFFVE 225
+ + + S +I V +S G + + D +++
Sbjct: 262 CDRHSKLFEEPEDPSNRSFFSE-IISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ + K+ E D W+ ++ + S + ++++
Sbjct: 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNT 373
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 9e-08
Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 49/207 (23%)
Query: 121 AEDTDSDNWHCVQTISESNN--GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
A + W Q ++ + I + FN G+ L + + I+ +
Sbjct: 4 AGGGNDIQWCFSQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI 63
Query: 179 SGDGYASWRHLCTISGYH-----------DRTIFSVHWSREG---IIASGAADDSVQFF- 223
+ T + + I + W + D +++ +
Sbjct: 64 QSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWK 123
Query: 224 VESKDDLIDGPSYK------------------------------MLLKKEKAHDMDVNSV 253
+ +D +G + K AH +NS+
Sbjct: 124 ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183
Query: 254 QWSPGERRLLASASDDGMIKIWELANT 280
+ L ++DD I +W L T
Sbjct: 184 SINSDYETYL--SADDLRINLWHLEIT 208
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 1e-07
Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 33/199 (16%)
Query: 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWE--------------DVGGDYECVATLEGH 46
T + + + P S +S T + + + D +
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284
Query: 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ------------- 93
+ + V ++ SG + T SV +W++ N V Q H
Sbjct: 285 ISSISDVKFSHSGRYMMT-RDYLSVKVWDLNMENR--PVETYQVHEYLRSKLCSLYENDC 341
Query: 94 --DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151
D W+ + V+ + SY+N +++ + ++ S
Sbjct: 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401
Query: 152 NAKGDKLVSCSDDLTIKIW 170
K D++ S D KI
Sbjct: 402 KRKKDEISVDSLDFNKKIL 420
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 4e-04
Identities = 11/107 (10%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR 67
C W+ S ++ T S++ +++ + EN + +
Sbjct: 347 ECCWNGSDSVVMTGSYNNFFRMFDRNTK--RDITLEASRENNKPRTVLKPRKVCASGKRK 404
Query: 68 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114
+ + + + + WHP +++ + +N
Sbjct: 405 KDEISVDSLDFNKKILHTA-------------WHPKENIIAVATTNN 438
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 2e-21
Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 32/267 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ + A+ + LLA A+ I+ E V LE + +K + + L
Sbjct: 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EVVIKLE-DRSAIKEMRFVKGIYL 72
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ +V++ + + ++ + + + + ++D + + ++ V+
Sbjct: 73 VVINA-KDTVYVLSLYSQ---KVLTTVFVPGK-ITSIDTDASLDWMLIGLQNGSMIVY-- 125
Query: 122 EDTDSDNW-----HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW----GA 172
D D D +Q S S I ++ +N + V S + +
Sbjct: 126 -DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENE 184
Query: 173 DITRMQSG--DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDD 229
+ + + I + D+S+ F+ D
Sbjct: 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW-----D 239
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWS 256
G ++ + ++N Q
Sbjct: 240 ANSGH----MIMARTVFETEINVPQPD 262
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 8e-19
Identities = 29/245 (11%), Positives = 81/245 (33%), Gaps = 27/245 (11%)
Query: 45 GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM 104
G ++ + +++ + LLA V I+ + E V L+ + +K +++
Sbjct: 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIY---GQQQVEVVIKLEDRSA-IKEMRFVKG- 69
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164
L + +T+ V + T+ I ++ +A D ++ +
Sbjct: 70 IYLVVINAKDTVYVLSLYSQK-----VLTTV-----FVPGKITSIDTDASLDWMLIGLQN 119
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFF 223
++ ++ D ++ S + + I S+ W+ R+ + + +
Sbjct: 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYEYVTLTY 178
Query: 224 VESKDDLI---------DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 274
++++ P K + V + P + + +D +
Sbjct: 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVF 237
Query: 275 WELAN 279
W+ +
Sbjct: 238 WDANS 242
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 3e-17
Identities = 21/251 (8%), Positives = 70/251 (27%), Gaps = 32/251 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
++ + L+ + T + + + T+ + S+ +AS
Sbjct: 57 DRSAIKEMRFVKGIYLVV-INAKDTVYVLSLYSQ--KVLTTVFVPGK-ITSIDTDASLDW 112
Query: 62 LATCGRDKSVWIWEVMPG--------NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113
+ ++ S+ ++++ N + + +QW+P SY+
Sbjct: 113 MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172
Query: 114 NTIKVWWAEDTDSDNWHCVQ---------TISESNNGHSSTIWALSFNAKGDKLVSCSDD 164
+ + + + ++N + + ++ +++ +D
Sbjct: 173 YVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED 232
Query: 165 LTIKIWGAD------ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 218
++ W A+ + + S + I V+W + +
Sbjct: 233 NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW-----MCENNPEY 287
Query: 219 SVQFFVESKDD 229
+
Sbjct: 288 TSLLISHKSIS 298
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 6e-12
Identities = 39/322 (12%), Positives = 103/322 (31%), Gaps = 60/322 (18%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV----------- 50
T V + P+ + T D + W+ G T+ E V
Sbjct: 210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSST 269
Query: 51 -----KSVSWNAS----------GTLLATCGRDKSVWIWEVMPGNEF-----ECVSVLQG 90
V W + G ++S+ + ++ + E +
Sbjct: 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329
Query: 91 HAQDVKMVQWHPTMDV-----------LFSCSYDNTIKVWWAED--TDSDNWHCVQTISE 137
+ + +K+ + + F+ ++ + + + ++ + +
Sbjct: 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389
Query: 138 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197
++ + W S + + K+W ++ Q+ D + G
Sbjct: 390 ASLFPQNLSWLRPLATT-----SMAASVPNKLWLGALSAAQNKD--------YLLKGGVR 436
Query: 198 RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK--EKAHDMDVNSVQW 255
+ +G ++ SV+ + S D+ D S+++ L + KA ++ V+ + +
Sbjct: 437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496
Query: 256 SPGERRLLASASDDGMIKIWEL 277
+ E LA + + G + +++
Sbjct: 497 AA-ETLELAVSIETGDVVLFKY 517
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 4e-08
Identities = 24/284 (8%), Positives = 72/284 (25%), Gaps = 29/284 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW-----EDVGGDYECVATLEGHENEVKSVSW- 55
+ + P + + E Y + +++SW
Sbjct: 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400
Query: 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
T +W+ + + +L+G + + + + +
Sbjct: 401 RPLATTSMAASVPNKLWLGALSAAQNKD--YLLKGGVRTKRQKLPAEYGTAFITGHSNGS 458
Query: 116 IKVWWAEDTDSDNWHCVQ--TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173
++++ A D + + N + +SF A+ +L + + ++ +
Sbjct: 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYE 518
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233
+ + S + L + G++ G
Sbjct: 519 VNQFYSVENRPESGDL------EMNFRRFSLNNTNGVLVDVRDRAPTGVR--------QG 564
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ K +++ S + A G + + +
Sbjct: 565 FMPSTAVHANKG---KTSAINNSN--IGFVGIAYAAGSLMLIDR 603
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 86.1 bits (212), Expect = 3e-19
Identities = 31/283 (10%), Positives = 92/283 (32%), Gaps = 35/283 (12%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW---NA 57
+ + + + + + + D+ + H++ + SVS +
Sbjct: 264 LADSLITTFDFLSPTTV-VCGFKNGFVAEF-DLTDPEVPSFYDQVHDSYILSVSTAYSDF 321
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
T+++T D +I+ +V + ++ V + P + ++++
Sbjct: 322 EDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLR 380
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
S V + +TI A+ + +++ S D ++ I A +
Sbjct: 381 AV-----PSRAAFAVHPLV----SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL 431
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237
++ + ++ +S + D S + + + +D+
Sbjct: 432 HGIKNSSATQK--------SLRLWKWDYSIKD--DKYRIDSSYEVYPLTVNDVSKAKID- 480
Query: 238 MLLKKEKAHDMDVNSVQWSPGERR--LLASASDDGMIKIWELA 278
AH +++ +W+ A ++ G++ + L+
Sbjct: 481 -------AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 4e-16
Identities = 24/289 (8%), Positives = 76/289 (26%), Gaps = 43/289 (14%)
Query: 10 AWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNASGT------L 61
+ ++ + I+ V T+ EV + W+
Sbjct: 168 PLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGC 227
Query: 62 LATCGRDKSVWIWEVMPGNEFEC--------VSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113
L+ ++ ++ E++ L + + + +
Sbjct: 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKN 286
Query: 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173
+ + D + + ++ + ++ + + + + + D I+
Sbjct: 287 GFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF--- 338
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID 232
+ T+S + + V + + S++
Sbjct: 339 -------NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV-----PSRA 386
Query: 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 281
+ L+ + + ++ S ++ + S DG + I A L
Sbjct: 387 AFAVHPLVS----RETTITAIGVSRL-HPMVLAGSADGSLIITNAARRL 430
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 1e-16
Identities = 19/231 (8%), Positives = 61/231 (26%), Gaps = 34/231 (14%)
Query: 52 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQWHPTMDVLFS 109
+ S + D ++ ++ ++ + ++ P + L
Sbjct: 41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPC-NRLLL 99
Query: 110 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTI 167
N I + ++ + + E ++ I + + + + TI
Sbjct: 100 LYPGNQITILDSKTN--------KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTI 151
Query: 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 226
+ S D S ++ ++A + D + +
Sbjct: 152 GFQSYEDDS-----------QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY--- 197
Query: 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+L + + + V+++ + D + ++L
Sbjct: 198 --NLSSPDQASSRFPVD--EEAKIKEVKFADN-GYWMVVECDQT-VVCFDL 242
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 3e-16
Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 4/172 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
S LLA S D ++ D E ++K V + +G
Sbjct: 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW 228
Query: 62 LATCGRDKSVWIWEV--MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ D++V +++ G + + + + S ++
Sbjct: 229 MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIW 170
+ D + NW + + ++ + G + + I
Sbjct: 288 YKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIV 339
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 2e-15
Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 16/227 (7%)
Query: 2 HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
+ + A T D + + + E S +
Sbjct: 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQ-SYEDDSQYIVHSAKSDVEYSSGVLHKDS 182
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
LLA D + ++ + ++ +K V++ + D T+ +
Sbjct: 183 LLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVV-ECDQTVVCF 240
Query: 120 WAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGAD-ITR 176
D + + + G +++ S + ++ I+ D T+
Sbjct: 241 -----DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF 223
+ D LC S D T V GI A +DS
Sbjct: 296 NWTKDE---ESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIV 339
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-09
Identities = 23/178 (12%), Positives = 50/178 (28%), Gaps = 30/178 (16%)
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
V D + +D+ + + TI+ N A+ ++L+
Sbjct: 50 VCMCRCEDGALHFTQLKDSKT-----ITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGN 104
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS---REGIIASGAADDSVQF 222
I I + + + L I I ++ ++ F
Sbjct: 105 QITILDS-----------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153
Query: 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
+ D++ +S LLA S DG++ ++ L++
Sbjct: 154 Q--------SYEDDSQYIVHSAKSDVEYSSGVLHKDS--LLLALYSPDGILDVYNLSS 201
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-15
Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 28/244 (11%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
+ N V +N + L KS I+ V P +S H V+M
Sbjct: 10 NPIVPENHVSNPVTDYEFNQDQSCLI-LSTLKSFEIYNVHPVA--HIMSQEMRHLSKVRM 66
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
+ H T V F + +W D V I + + L + +
Sbjct: 67 L--HRTNYVAFVTGVKEVVHIW-----DDVKKQDVSRIK-----VDAPVKDLFLS--REF 112
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAA 216
+V D I ++ + D R + ++S ++ I I +
Sbjct: 113 IVVSYGD-VISVFKFGNPWKRITD---DIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQS 168
Query: 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG-MIKIW 275
S + ++ KAH + V+ + + ++A+ S DG +I+++
Sbjct: 169 SGSATTQDQGVQQKAILGKGVLI----KAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVF 223
Query: 276 ELAN 279
+ +
Sbjct: 224 KTED 227
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 3e-14
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 11/145 (7%)
Query: 37 YECVATLEGHENEVKSVSWNASGTLLATCGRDKS-VWIWEVMPGNEFECVSVLQGHAQDV 95
++ H N +K V N ++ATC +D + + +++ G V +
Sbjct: 185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRA 241
Query: 96 KM--VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA----- 148
+ ++W L S T+ V+ + + H ++ S
Sbjct: 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS 301
Query: 149 LSFNAKGDKLVSCSDDLTIKIWGAD 173
+ + +G K+ S+ + +W
Sbjct: 302 VDKHVRGCKIAWISESSLVVVWPHT 326
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 3e-14
Identities = 34/287 (11%), Positives = 78/287 (27%), Gaps = 31/287 (10%)
Query: 1 MHTRTVRSCAWSPSGKLLA-TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 59
R + +A IW+DV + V+ ++ VK + +
Sbjct: 56 QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--QDVSRIKVD-APVKDLFLSREF 112
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV---LFSCSYDNTI 116
+++ + + +V + + +
Sbjct: 113 IVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA 172
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT-IKIWGADIT 175
I H++ I + N K D + +CS D T I+++
Sbjct: 173 TTQDQGVQQKAILGKGVLI----KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT--- 225
Query: 176 RMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233
+ DR + + WS +G +A + ++ F D
Sbjct: 226 --------EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR 277
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGE-----RRLLASASDDGMIKIW 275
+ K + K + + + +A S+ ++ +W
Sbjct: 278 HALKGWIN-MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 6e-14
Identities = 40/281 (14%), Positives = 93/281 (33%), Gaps = 28/281 (9%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+ V ++ L ++ + I+ +V ++ H ++V+ + + +
Sbjct: 18 VSNPVTDYEFNQDQSCLILST-LKSFEIY-NVHPVAHIMSQEMRHLSKVRMLHR--TNYV 73
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
G + V IW+ + + VS ++ VK + SY + I V+
Sbjct: 74 AFVTGVKEVVHIWDDVKK---QDVSRIKVD-APVKDLFLSREF---IVVSYGDVISVFKF 126
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ ++ + +++ FN + + + +
Sbjct: 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL- 185
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS-VQFFVESKDDLIDGPSYKML 239
I H I V +R+ ++A+ + D + ++ F DG +
Sbjct: 186 -----GKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVF-----KTEDGVLVREF 234
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280
+ DV ++WS LA SD + ++E+ N
Sbjct: 235 --RRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFND 272
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 14/111 (12%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD------YECVATLEGHENEVKSVS 54
+ V WS G LA S T ++E + ++ ++E +
Sbjct: 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297
Query: 55 WN------ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 99
+ G +A V +W E V+ + ++Q
Sbjct: 298 FKLSVDKHVRGCKIAWISESSLVVVWPH--TRMIETFKVVFDDEMERWLIQ 346
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 1e-12
Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 30/227 (13%)
Query: 46 HENEVKSVSWNASGTLLATC----GRDKSVWIWEV--------MPGNEFECVSVLQGHAQ 93
+ + ++ + L+ C + ++V F +L+
Sbjct: 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG 150
Query: 94 DVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152
V ++W+PT+ + C D +I V V + + ++ ++
Sbjct: 151 MVIDMKWNPTVPSMVAVCLADGSIAVL-----QVTETVKVCAT----LPSTVAVTSVCWS 201
Query: 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--I 210
KG +L + T+ + H + V W
Sbjct: 202 PKGKQLAVGKQNGTVVQYLPT------LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255
Query: 211 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
I AAD +++ + L+ K + S
Sbjct: 256 IVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ 302
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-08
Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 14/154 (9%)
Query: 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
V W+P+ ++A D + + + + V V SV W+ G
Sbjct: 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ--VTETVKVCATLPSTVAVTSVCWSPKGK 205
Query: 61 LLATCGRDKSVWIWEVMPGNE---FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
LA ++ +V + + H V V W +F+ Y
Sbjct: 206 QLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAA--- 260
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151
A+ T + V + I+
Sbjct: 261 ---ADGTLETSPDVVMALLPKKEEKHPEIFVNFM 291
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 588 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 6e-04
Identities = 31/236 (13%), Positives = 77/236 (32%), Gaps = 24/236 (10%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
R C SP +A S + +++D + WN + +
Sbjct: 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVG 147
Query: 66 GRDKSVWIWEVMPGNEFECVSVL--------QGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117
D + + + +E G V + W+ DVL + +N++
Sbjct: 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE--DVLVAALSNNSVF 205
Query: 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWGADITR 176
+ S + + I ++ + + + + +++C + I + I+
Sbjct: 206 S--MTVSASSHQPVSRMIQNASRRKITDLKIVDYKV----VLTCPGYVHKIDLKNYSISS 259
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-----AADDSVQFFVESK 227
+++G H+ ++ + TI + + AD+ + ++E K
Sbjct: 260 LKTGSLENF--HIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKK 313
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.85 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.76 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.74 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.64 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.64 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.62 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.61 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.59 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.48 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.47 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.45 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.44 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.44 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.38 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.38 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.37 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.36 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.34 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.34 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.33 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.32 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.26 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.2 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.17 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.13 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.05 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.05 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.04 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.96 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.93 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.93 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.87 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.86 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.84 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.84 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.79 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.73 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.59 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.48 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.45 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.34 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.32 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.31 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.27 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.27 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.21 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.21 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.13 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.11 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.08 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.01 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.01 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.0 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.99 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.98 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.95 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.94 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.93 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.92 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.91 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.85 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.83 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.82 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.79 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.73 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.61 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.54 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.51 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.42 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.41 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.31 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.21 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.16 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.05 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.03 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.99 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.92 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.9 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.85 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.85 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.81 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.75 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.47 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.46 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.35 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.31 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.24 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.08 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.88 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.71 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.51 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.49 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.45 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.36 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.17 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.16 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.86 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 94.71 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.51 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.5 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.47 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.39 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.38 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.36 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.33 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.28 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 94.19 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 94.14 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.04 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.44 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.41 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.18 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.93 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.41 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 92.35 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 92.13 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.13 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 91.47 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.42 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.25 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.78 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 90.74 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 90.5 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 89.92 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 89.56 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 89.47 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 89.4 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 88.72 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 88.67 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 88.09 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 87.9 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 87.54 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 85.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 85.43 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 84.17 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 83.61 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 81.53 |
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-45 Score=299.45 Aligned_cols=272 Identities=50% Similarity=0.974 Sum_probs=218.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|+|++||+|+.|+.++||+...+...++..+.+|...|.+++|+|++++|++|+.|++|++||+.....
T Consensus 60 h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 78899999999999999999999999999988777777889999999999999999999999999999999999987766
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..++..+.+|...|.+++|+|++.+|++++.|++|++|+.+... +.+... ..+|...|++++|+|++++|++|
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~---~~~~~~----~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD---WVCCAT----LEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE---EEEEEE----ECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC---EEEEEE----ecCCCCceEEEEECCCCCEEEEE
Confidence 66778889999999999999999999999999999999875431 112222 24799999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCC----CCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 162 SDDLTIKIWGADITRMQSGD----GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
+.|++|++|+.......... ....+.....+.+.|...|.++.|++++ .+++++.|+.+++|+.........+..
T Consensus 213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF 292 (345)
T ss_dssp ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence 99999999986322111100 0112233445556688899999999864 688999999999998754322222222
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
........+|...|++++|+|+++.+|++|+.||.|++|++..+
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 22223346899999999999987668999999999999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=280.10 Aligned_cols=244 Identities=18% Similarity=0.309 Sum_probs=202.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|++++|++|+.|+.|+|||..++. ++..+.+|..+|.+++|+|++++|++|+.|++|++||+..++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~- 88 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE- 88 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-
Confidence 78899999999999999999999999999987764 567888999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 160 (281)
++..+.+|...|++++|+|++.++++|+.|++|++|+++... ... ....+|...|.+++|+| ++..|++
T Consensus 89 --~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~----~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 89 --KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALE----QTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp --EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEE----EEECCCCSCEEEEEECTTCTTEEEE
T ss_pred --EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chh----hhhcccCCcEEEEEECCCCCCEEEE
Confidence 456788999999999999999999999999999999886531 111 22347999999999999 5789999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--C-ceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E-GIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
|+.|++|++||+....+ .......+...+..+.+.+ + .++++++.|+.+++|+....
T Consensus 159 gs~D~~v~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------- 218 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (304)
T ss_dssp EETTSEEEEEETTCSSC-----------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred EeCCCeEEEEECCCCCc-----------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence 99999999999853221 1222233556777777765 3 47999999999999977542
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......+|...|++++|+|+++ +|++|+.||.|+|||+..
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT
T ss_pred ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence 23444568999999999999875 688999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=281.75 Aligned_cols=263 Identities=41% Similarity=0.821 Sum_probs=199.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-----ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|...|++++|+|++++||+|+.|+.|+||+.... ...++..+.+|...|.+++|+|+|++|++|+.|++|++||+
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 8889999999999999999999999999997432 23456778899999999999999999999999999999999
Q ss_pred cC-CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-
Q 023500 77 MP-GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK- 154 (281)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 154 (281)
.. +...+++..+.+|...|.+++|+|++.+|++++.|++|++|+..... ++++..+ .+|...|++++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~----~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVL----NGHEGTVWSSDFDKTE 209 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEE----CCCSSCEEEEEECCSS
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEc----cCCCCcEEEEEecCCC
Confidence 43 34445677889999999999999999999999999999999865421 2233333 479999999999998
Q ss_pred -CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCC
Q 023500 155 -GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 155 -~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
+..|++|+.|++|++|++...... ....+.....+...|...|.+++|++++.+++++.|+.+++|+.....
T Consensus 210 ~~~~l~s~s~D~~v~iw~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~---- 282 (330)
T 2hes_X 210 GVFRLCSGSDDSTVRVWKYMGDDED---DQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE---- 282 (330)
T ss_dssp SSCEEEEEETTSCEEEEEEEEECTT---SCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE----
T ss_pred CeeEEEEEeCCCeEEEEEecCCCcc---ccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc----
Confidence 678999999999999987533211 011112222333347889999999999999999999999999764311
Q ss_pred ccceeeeeeccCCCC-CeeEEEEcCC-CCeeEEEeCCCCeEEEEEcccC
Q 023500 234 PSYKMLLKKEKAHDM-DVNSVQWSPG-ERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~-~v~~~~~~~~-~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..........|.. .|++++|+|. +..+|++|+.||.|+||++...
T Consensus 283 --~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 283 --WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp --EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred --eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 1112223356776 8999999993 2357899999999999998653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=277.75 Aligned_cols=244 Identities=21% Similarity=0.267 Sum_probs=195.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--eeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...|++++|+|++ .|++|+.||.|+|||..+++... ...+.+|.+.|++++|+|+|++|++|+.|++|++||+..+
T Consensus 82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4679999999985 57799999999999987765322 2345689999999999999999999999999999999765
Q ss_pred eeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 158 (281)
+++..+.+|...|++++|+|++. ++++++.|++|++||++... +...+. ...|...+.+++|+|+ +.+|
T Consensus 160 --~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~--~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 160 --VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIG--CSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp --EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC------CCCEEEEEECSSCTTEE
T ss_pred --cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeee--cceeeccceeeeecCCCCcce
Confidence 35678899999999999999985 78999999999999987643 222222 1234567899999985 5688
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
++|+.|++|++||++..++ +..+. .|...|.+++|+|++ ++++++.|+.+++|+....
T Consensus 231 ~sg~~dg~v~~wd~~~~~~-----------~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~-------- 290 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSC-----------VLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS-------- 290 (344)
T ss_dssp EEEETTSEEEEEESCC--C-----------CEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--------
T ss_pred EEeccCCcEEEEECCCCcE-----------EEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--------
Confidence 9999999999999864321 22222 478899999999875 5889999999999976432
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+ ....+|...|++++|+|+++.+|+++|.|++|++|++..
T Consensus 291 -~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 291 -EL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp -EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred -cE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 11 234689999999999999888899999999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-41 Score=269.93 Aligned_cols=256 Identities=26% Similarity=0.394 Sum_probs=202.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++++|+|+|++||+|+.|++|+||+..+....++..+.+|.+.|++++|+| ++++|++|+.|++|++||+..+
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 88999999999999999999999999999987554456788999999999999986 4899999999999999999754
Q ss_pred CeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC---
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--- 154 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 154 (281)
. ...+..+.+|...|.+++|+|+ +.++++++.|++|++|++....... .. ...+|...|.+++|+|+
T Consensus 88 ~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~----~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 88 R-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PI----IIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp C-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CE----EEECCSSCEEEEEECCCC--
T ss_pred c-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---ee----eeecccCccceEeecCCccc
Confidence 3 1234567789999999999998 7899999999999999987542110 11 12378899999999997
Q ss_pred ----------CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC----ceeeecCCCCcE
Q 023500 155 ----------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE----GIIASGAADDSV 220 (281)
Q Consensus 155 ----------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~d~~~ 220 (281)
+++|++|+.|++|++||.+.... .+.....+ ..|...|.+++|+|+ .++++++.|+.+
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-------~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-------TYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTT-------EEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-------eEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 46999999999999998753221 01112223 247889999999997 478999999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++|+...... ..... ......|...|.+++|+|+++ +|++++.|+.|+||+..
T Consensus 232 ~iWd~~~~~~---~~~~~-~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 232 IIWTQDNEQG---PWKKT-LLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEESSTTS---CCEEE-ESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCCC---cccee-eeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence 9998754211 01111 111246788999999999875 67899999999999975
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=282.29 Aligned_cols=242 Identities=29% Similarity=0.562 Sum_probs=205.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|+|||..+++ ....+.+|.+.|.+++|+|++.+|++|+.|++|++||+....
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~- 183 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE- 183 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-
Confidence 78899999999999999999999999999988765 467889999999999999999999999999999999986543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++..+.+|...|.+++|+|+++++++++.|++|++|++.... ++..+ .+|...|.++.|+|++.+|++|
T Consensus 184 --~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-----~~~~~----~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 184 --CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTF----TGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp --EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEE----ECCSSCEEEEEECTTSSEEEEE
T ss_pred --eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEE----eCCCccEEEEEECCCCCEEEEE
Confidence 567788999999999999999999999999999999987542 33333 3788999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC---------------------ceeeecCCCCcE
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---------------------GIIASGAADDSV 220 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~~d~~~ 220 (281)
+.|++|++||+..... ...+ ..|...+.++.|+|+ .++++++.|+.+
T Consensus 253 s~D~~v~vwd~~~~~~-----------~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 253 SNDQTVRVWVVATKEC-----------KAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp ETTSCEEEEETTTCCE-----------EEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred cCCCeEEEEECCCCce-----------eeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 9999999999864321 1122 236778899999874 368999999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+.... .......+|...|++++|+|+++ +|++|+.||.|++||+.+
T Consensus 321 ~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 321 KMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EEEETTTT---------EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTT
T ss_pred EEEECCCC---------ceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence 99977542 22334567999999999999876 578999999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=271.30 Aligned_cols=260 Identities=28% Similarity=0.553 Sum_probs=203.8
Q ss_pred Ccc-ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTR-TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~-~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.. .|++++|+|+|++||+|+.|+.|+||+..++...+... ..+|...|.+++|+|+|++|++|+.|+++++|++...
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~ 93 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD 93 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence 666 89999999999999999999999999987765433333 3689999999999999999999999999999998654
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. .+++..+.+|...|.+++|+|++++|++++.|++|++|++..... ..++.. ..+|...|.+++|+|++++|+
T Consensus 94 ~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~----~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 94 D-FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--YECVSV----LNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp --EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--EEEEEE----ECCCCSCEEEEEECSSSSCEE
T ss_pred C-eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--eEEEEE----ecCcCCCeEEEEECCCCCEEE
Confidence 3 346778899999999999999999999999999999999875421 122222 247889999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC-----
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG----- 233 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~----- 233 (281)
+++.|+.|++|+...... .....+ ..|...|.+++|+|++ ++++++.|+.+++|+.........
T Consensus 167 s~s~d~~i~~w~~~~~~~---------~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDW---------VCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EEETTSCEEEEEEETTEE---------EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred EEeCCCcEEEEEecCCCE---------EEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence 999999999998753211 111222 2478899999999976 688999999999997532211110
Q ss_pred --ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 --PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+...........|...|++++|+|++. .+++++.|+.|++|+...
T Consensus 237 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP 283 (345)
T ss_dssp --CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred cCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence 111111122234889999999999876 578999999999999753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=266.69 Aligned_cols=244 Identities=19% Similarity=0.334 Sum_probs=202.5
Q ss_pred CccceeEEEEcCC----CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~----~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
|.+.|++++|+|+ +++|+||+.|+.|+||+...........+.+|...|.+++|+|++.++++++.|++|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 8899999999985 579999999999999998777666667889999999999999999999999999999999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
.+. ++..+..|...+.+++|+|+++++++++.|+.|++|+++... ....+ ..|...|.+++|+|++++
T Consensus 111 ~~~---~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-----~~~~~----~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 111 NGK---QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-----KEYSL----DTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp TTE---EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-----EEEEE----ECSSSCEEEEEECTTSSE
T ss_pred CCC---EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-----eeEEe----cCCCceEEEEEECCCCCE
Confidence 654 455677788889999999999999999999999999887643 22222 246678999999999999
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY 236 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~ 236 (281)
|++|+.|+.|++||+...+ ....+ ..|..+|.+++|+|++ ++++++.|+.+++|+....
T Consensus 179 lasg~~dg~i~iwd~~~~~-----------~~~~~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-------- 238 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGK-----------LLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-------- 238 (321)
T ss_dssp EEEEETTSCEEEEETTTTE-----------EEEEE-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--------
T ss_pred EEEEcCCCeEEEEECCCCc-----------EEEEE-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--------
Confidence 9999999999999986432 12222 2477889999999976 6888999999999977542
Q ss_pred eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 237 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......+|...|++++|+|+++ +|++++.|+.|+|||+..
T Consensus 239 -~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 239 -NLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp -CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred -ceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC
Confidence 12334568999999999999876 578999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=267.06 Aligned_cols=258 Identities=25% Similarity=0.458 Sum_probs=195.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee-cC-CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-EG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~-~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++++|+|+ +||+|+.|+.|+||+...+.......+ .+ |.+.|.+++|+|++++|++|+.|++|++|++...
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence 8899999999988 999999999999999876544445555 44 9999999999999999999999999999998532
Q ss_pred C----eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 80 N----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 80 ~----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
. .......+.+|...|.+++|+|++++|++++.|++|++|++..... ..+++..+ .+|...|.+++|+|++
T Consensus 91 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~-~~~~~~~~----~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVL----QEHSQDVKHVIWHPSE 165 (330)
T ss_dssp ----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC-CCEEEEEE----CCCSSCEEEEEECSSS
T ss_pred cCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC-CeEEEEEe----ccCCCceEEEEECCCC
Confidence 1 2345677889999999999999999999999999999999853211 12222222 4789999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--c-eeeecCCCCcEEEEecccCCCcC
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--G-IIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
.+|++|+.|++|++||..... +.....+ ..|...|.++.|+++ + .+++++.|+.+++|+........
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~---------~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDD---------WECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTE---------EEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred CEEEEEcCCCeEEEEECCCCC---------eeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 999999999999999864221 1122222 247889999999986 4 58899999999999875432111
Q ss_pred Cccceeeeeec-cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKE-KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.... ...... ..|...|++++|++++ +|++++.||.|+||++..
T Consensus 236 ~~~~-~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 236 QQEW-VCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp CEEE-EEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEET
T ss_pred ccee-EEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCC
Confidence 1111 112222 3488999999999754 588999999999999753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=278.26 Aligned_cols=241 Identities=32% Similarity=0.539 Sum_probs=202.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|++++|++|+.|+.|+|||..+.+ ++..+.+|...|.+++|+|++++|++|+.|++|++||+..+.
T Consensus 149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~- 225 (410)
T 1vyh_C 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY- 225 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 78999999999999999999999999999987653 577889999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-------
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK------- 154 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------- 154 (281)
++..+.+|...|.++.++|++.++++++.|++|++|++.... +...+ .+|...|.+++|+|+
T Consensus 226 --~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~----~~h~~~v~~~~~~~~~~~~~~~ 294 (410)
T 1vyh_C 226 --CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAEL----REHRHVVECISWAPESSYSSIS 294 (410)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECCSCGGGGGG
T ss_pred --EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEe----cCCCceEEEEEEcCcccccchh
Confidence 466788999999999999999999999999999999886542 22222 468899999999996
Q ss_pred -------------CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcE
Q 023500 155 -------------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220 (281)
Q Consensus 155 -------------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~ 220 (281)
+.+|++|+.|+.|++||+..+. ....+. .|...|.++.|++++ ++++++.|+.+
T Consensus 295 ~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-----------~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-----------CLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp GCCSCC-------CCEEEEEETTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred hhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-----------eEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 5689999999999999986432 222332 478899999999876 68899999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++|+.... .......+|...|++++|+|++. +|++|+.||.|+||+++
T Consensus 363 ~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTS---------CCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred EEEECCCC---------ceEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence 99976432 12233457999999999999876 57899999999999863
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=272.47 Aligned_cols=255 Identities=26% Similarity=0.395 Sum_probs=199.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++++|+|+|++||+|+.|++|+|||..++...++..+.+|.+.|++++|+| ++++|++||.|++|++||+..+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 88999999999999999999999999999987765556778899999999999976 4899999999999999998754
Q ss_pred CeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC---
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--- 154 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 154 (281)
. ......+.+|...|++++|+|+ +.++++++.|++|++|++..... +. ......+|...|.+++|+|+
T Consensus 92 ~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~----~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 92 T-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WE----VKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp C-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EE----ECCBTTSSSSCBCCCEECCCCCC
T ss_pred c-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cc----eeeeeccccCCcceEEEccccCC
Confidence 3 2345567889999999999998 77999999999999998865321 11 11223478889999999997
Q ss_pred --------------CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-----ceeeecC
Q 023500 155 --------------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIASGA 215 (281)
Q Consensus 155 --------------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~ 215 (281)
+.+|++|+.|++|++||.+.... +.....+ ..|...|.+++|+|+ .++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------WKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------EEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------cceeeec-ccCCCceEEEEecCCCCCCCceEEEEc
Confidence 36899999999999998752210 1112222 247889999999987 4799999
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.|+.+++|+...... .... ......|...|++++|+|+++ +|++++.|+.|+||+..
T Consensus 236 ~D~~v~iw~~~~~~~--~~~~---~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASS--NTWS---PKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTC--CCCB---CCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccc--cchh---hhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 999999997753110 0000 111235788999999999875 68899999999999975
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=266.88 Aligned_cols=243 Identities=25% Similarity=0.363 Sum_probs=195.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|+|||..++. .+..+..|...|.+++|+|++++|++|+.|+.+++|++.....
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC--cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 78999999999999999999999999999987664 3566778888999999999999999988888888888653210
Q ss_pred ------------------------------------------eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 82 ------------------------------------------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 82 ------------------------------------------~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
..++..+.+|...|.+++|+|++.++++++.|++|++|
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w 211 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 01233466799999999999999999999999999999
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee-cccCc
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDR 198 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 198 (281)
++.... +...+ .+|...|.+++|+|++.+|++|+.|++|++||++..+. ...+. ..+..
T Consensus 212 d~~~~~-----~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----------~~~~~~~~~~~ 271 (340)
T 1got_B 212 DVREGM-----CRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----------LMTYSHDNIIC 271 (340)
T ss_dssp ETTTCS-----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEECCTTCCS
T ss_pred ECCCCe-----eEEEE----cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-----------EEEEccCCccc
Confidence 887542 22323 47889999999999999999999999999999864321 11111 11234
Q ss_pred ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 199 ~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+.+++|+|++ ++++++.|+.+++|+.... .......+|..+|++++|+|++. +|++|+.|+.|+|||
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 68999999976 6888899999999976532 12334568999999999999875 588999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=264.49 Aligned_cols=241 Identities=22% Similarity=0.297 Sum_probs=203.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++|+|+++++++|+.|+.|+|||..+++ ++..+.+|...+.+++|+|++++|++|+.|+.|++|++..+..
T Consensus 79 h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 78899999999999999999999999999987764 4667788999999999999999999999999999999976653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
...+..|...+.+++|+|+++++++++.|+.|++|+++... .+..+ .+|...|.+++|+|++++|++|
T Consensus 157 ---~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~----~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 157 ---EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTL----EGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp ---EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEE----CCCSSCCCEEEECTTSCEEEEE
T ss_pred ---eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEE----cccCCceeEEEEcCCCCEEEEE
Confidence 45567788889999999999999999999999999886542 23333 4788999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++||++... ....+ ..|...|.+++|+|++ ++++++.|+.+++|+.... ...
T Consensus 225 s~dg~i~iwd~~~~~-----------~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---------~~~ 283 (321)
T 3ow8_A 225 SDDGYIKIYDVQHAN-----------LAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---------TCV 283 (321)
T ss_dssp CTTSCEEEEETTTCC-----------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEE
T ss_pred cCCCeEEEEECCCcc-----------eeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------EEE
Confidence 999999999986432 12222 2478889999999876 6889999999999977532 233
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.....|...|++++|+|++. +|++++.||.|+|||..
T Consensus 284 ~~~~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTCCEEEEECC
T ss_pred EEEcCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeCC
Confidence 44567999999999999876 57899999999999964
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=265.94 Aligned_cols=242 Identities=22% Similarity=0.375 Sum_probs=194.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee-------------------------------------------
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE------------------------------------------- 38 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~------------------------------------------- 38 (281)
|.+.|++++|+|++++||||+.|+.|+|||..+....
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 8889999999999999999999999999996543321
Q ss_pred ---eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecC
Q 023500 39 ---CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYD 113 (281)
Q Consensus 39 ---~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d 113 (281)
....+.+|.+.|.+++|+|++..|++++.|++|++||+..+. ++..+.+|...|.++.|+|+ ++++++|+.|
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 123345688899999999999999999999999999997664 45678899999999999884 6799999999
Q ss_pred CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee
Q 023500 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 193 (281)
++|++||+.... ++..+ .+|...|.+++|+|++.+|++|+.|++|++||+..... ...+.
T Consensus 220 g~v~~wd~~~~~-----~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-----------~~~~~ 279 (354)
T 2pbi_B 220 KKAMVWDMRSGQ-----CVQAF----ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-----------VAIYS 279 (354)
T ss_dssp SCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEEC
T ss_pred CeEEEEECCCCc-----EEEEe----cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEc
Confidence 999999987542 33333 47889999999999999999999999999999864321 11111
Q ss_pred c-ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 194 G-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 194 ~-~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
. .+...+.++.|++++ ++++++.|+.+++|+..... ......+|..+|++++|+|+++ +|++|+.|+.
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~ 349 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---------RVSILFGHENRVSTLRVSPDGT-AFCSGSWDHT 349 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---------EEEEECCCSSCEEEEEECTTSS-CEEEEETTSE
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---------eEEEEECCCCcEEEEEECCCCC-EEEEEcCCCC
Confidence 1 123467889999876 67888899999999775421 2234468999999999999886 5889999999
Q ss_pred EEEEE
Q 023500 272 IKIWE 276 (281)
Q Consensus 272 v~iw~ 276 (281)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=263.80 Aligned_cols=248 Identities=23% Similarity=0.446 Sum_probs=197.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++|++|+.|+.|+|||..+++ ++..+.+|...|.+++|+|++.+|++|+.|++|++||+..
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--- 138 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--- 138 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---
T ss_pred CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---
Confidence 78899999999999999999999999999988774 5678899999999999999999999999999999999853
Q ss_pred eEEeEeecCCccceeEEEecCCC------CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.++..+.+|...|.++.|+|.. ..+++++.|++|++|++.... .... ..+|...|.+++|+|++
T Consensus 139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~----~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEAD----FIGHNSNINTLTASPDG 208 (319)
T ss_dssp -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEE----ECCCCSCEEEEEECTTS
T ss_pred -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhee----ecCCCCcEEEEEEcCCC
Confidence 2456778999999999999954 489999999999999886532 2222 24799999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCcc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
++|++|+.|++|++||+...+ ....+. +...+.+++|+|++.+++++.+..+++|+...........
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAKK-----------AMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp SEEEEEETTCEEEEEETTTTE-----------EEEEEE--CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCc-----------EEEEec--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC
Confidence 999999999999999986432 122222 3467999999999987777777789999765321110000
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.........|...+.+++|+|+++ +|++|+.||.|+|||+..
T Consensus 276 -~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 276 -PEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp -CCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred -ccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 000011234567799999999986 578999999999999865
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=265.18 Aligned_cols=245 Identities=20% Similarity=0.292 Sum_probs=189.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeee--eeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV--ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|+++++ +++.|+.|+|||..+++.... ....+|...|++++|+|++++|++|+.|++|++||+..+
T Consensus 93 ~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp CSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 66789999999998765 678899999999876543222 234589999999999999999999999999999998755
Q ss_pred CeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 157 (281)
+++..+.+|...|++++|+|++. ++++++.|++|++||++.... ...+ ....|...+.+++|+|++ .+
T Consensus 172 ---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-----~~~~--~~~~~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 172 ---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-----ATRI--DFCASDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp ---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-----BCBC--CCTTCCSCEEEEEECTTSTTE
T ss_pred ---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-----eeee--eeccccccccchhhhhcccce
Confidence 35677889999999999999875 789999999999998875431 1111 123466789999999974 68
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
|++|+.|+.|++||++..+. ...+ ..+...|.+++|+|++ ++++++.|+.+++|+....
T Consensus 242 la~g~~d~~i~~wd~~~~~~-----------~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------- 302 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDS-----------AQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------- 302 (357)
T ss_dssp EEEEESSSCEEEEESSCGGG-----------CEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-------
T ss_pred EEEeecccceeEEECCCCcE-----------eEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-------
Confidence 89999999999999864322 1122 2467889999999865 6889999999999976432
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+ ...+|...|++++|+|.+..+|+|++.||.|++|++..
T Consensus 303 --~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 303 --EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp --EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred --cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 122 23479999999999995445789999999999999865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=263.52 Aligned_cols=252 Identities=19% Similarity=0.302 Sum_probs=195.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+++++++|+.|+.|+|||..+++ ++..+.+|...|.+++|+|++++|++++.|++|++||+... .
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~ 151 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C 151 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC--EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c
Confidence 78899999999999999999999999999987764 46788899999999999999999999999999999998632 1
Q ss_pred eEEeEeecCCccceeEEEecCCC----------CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM----------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~----------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
........+|...|.+++|+|++ .++++++.|++|++|+... .....+ .+|...|.+++|
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~----~~h~~~v~~~~~ 221 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTF----KAHESNVNHLSI 221 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEE----ECCSSCEEEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEE----cCccccceEEEE
Confidence 11112223788899999999986 6899999999999998321 122222 378899999999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCc
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+|++++|++|+.|+.|++||+..... ....+ .+...+.+++|+|++.+++++.|+.+++|+.......
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~~----------~~~~~--~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLTY----------PQREF--DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCSS----------CSEEE--ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcc----------cceee--cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCC
Confidence 99999999999999999999742110 01111 1345689999999998888888999999987543211
Q ss_pred CCccce----eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 232 DGPSYK----MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 232 ~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...... .......+|...|++++|+|+++ +|++|+.||.|++|++..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEc
Confidence 100000 00011236888899999999886 578999999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=265.05 Aligned_cols=248 Identities=18% Similarity=0.250 Sum_probs=188.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC---------CceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG---------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~---------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
|...|.+++|+|||++|++++ |+++++||... ...........|...|.+++|+|++ .|++|+.|++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 557799999999999999887 66777775211 0001111222466789999999984 788999999999
Q ss_pred EEEecCCCeeE-EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 73 IWEVMPGNEFE-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 73 ~w~~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+||+..++... ......+|...|++++|+|++++|++|+.|++|++|++++. +++..+ .+|...|.+++|
T Consensus 107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-----~~~~~~----~~h~~~V~~~~~ 177 (344)
T 4gqb_B 107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-----VVLSSY----RAHAAQVTCVAA 177 (344)
T ss_dssp EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCEEEEEE
T ss_pred EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----cEEEEE----cCcCCceEEEEe
Confidence 99998765432 23345689999999999999999999999999999988754 233333 479999999999
Q ss_pred ccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccC
Q 023500 152 NAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKD 228 (281)
Q Consensus 152 ~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 228 (281)
+|++. +|++|+.|++|++||++..+.... + ....+...+.++.|+++ .++++++.|+.+++|+....
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--------~--~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQ--------I--GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEE--------C--C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred cCCCCCceeeeccccccccccccccceeee--------e--ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence 99874 789999999999999875432110 0 01124556788999874 36788999999999977542
Q ss_pred CCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 229 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .+....+|...|++++|+|++..+|++|+.|+.|+|||+..
T Consensus 248 ~---------~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 248 S---------CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred c---------EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 1 22345689999999999999877899999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=260.32 Aligned_cols=255 Identities=20% Similarity=0.356 Sum_probs=189.2
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
|++.|++++|+|+ +++||||+.|++|+|||....+ ..+...+.+|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 8899999999997 6899999999999999976543 23567789999999999999999999999999999999876
Q ss_pred CCCeeEE----------------------------------------eEeecCCccceeEEEecCCC--CeEEEEecCCe
Q 023500 78 PGNEFEC----------------------------------------VSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNT 115 (281)
Q Consensus 78 ~~~~~~~----------------------------------------~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~ 115 (281)
....... .....+|...+..++|+++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 4321110 11123456666677776653 35667777777
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|++|++.... .+.. ..+|...|.+++|+|++++|++|+.|+.|++||+...+ ....+.
T Consensus 197 i~i~d~~~~~-----~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----------~~~~~~-- 254 (340)
T 4aow_A 197 VKVWNLANCK-----LKTN----HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----------HLYTLD-- 254 (340)
T ss_dssp EEEEETTTTE-----EEEE----ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----------EEEEEE--
T ss_pred EEEEECCCCc-----eeeE----ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----------eeeeec--
Confidence 7777665431 2222 24788999999999999999999999999999986432 222222
Q ss_pred cCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 196 HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
+...+.++.+++++.+++++.|+.+++|+.....................|...|++++|+|+++ +|++|+.||.|+||
T Consensus 255 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 255 GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVW 333 (340)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence 45678999999999999999999999998754322111111111223457889999999999876 57899999999999
Q ss_pred Eccc
Q 023500 276 ELAN 279 (281)
Q Consensus 276 ~~~~ 279 (281)
|+..
T Consensus 334 ~~~t 337 (340)
T 4aow_A 334 QVTI 337 (340)
T ss_dssp EEEC
T ss_pred eCCC
Confidence 9875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=264.47 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=190.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|.+.|++++|+|++++||+|+.|+.|+|||..+++ ....+.+|...|.+++|+|+|++|++|+.|+.+++|++....
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~--~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ--KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE--EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 88999999999999999999999999999987664 456677788888888888888777777777777777753210
Q ss_pred ---------------------------e--e-----------------EEeEee-----cCCccceeEEEecC-CCCeEE
Q 023500 81 ---------------------------E--F-----------------ECVSVL-----QGHAQDVKMVQWHP-TMDVLF 108 (281)
Q Consensus 81 ---------------------------~--~-----------------~~~~~~-----~~~~~~v~~v~~~p-~~~~l~ 108 (281)
. . +++..+ .+|...|.++.|+| ++++++
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 0 0 011122 46888899999987 788999
Q ss_pred EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccce
Q 023500 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH 188 (281)
Q Consensus 109 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 188 (281)
+|+.|++|++||+.... ..+..+ .+|...|.+++|+|++.+|++|+.|++|++||+...........
T Consensus 223 sgs~D~~v~~wd~~~~~----~~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~----- 289 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITS----RAVRTY----HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR----- 289 (380)
T ss_dssp EEETTSCEEEEETTTTC----CCCEEE----CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC-----
T ss_pred EEECCCeEEEEECCCCC----cceEEE----CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc-----
Confidence 99999999999986432 122222 47999999999999999999999999999999875432110000
Q ss_pred eEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 189 LCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
.......+...+.+++|++++ ++++++.|+.+++|+..... ....+.....+|...|++++|+|++. +|++|+
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs 363 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-----MVLNLGTLQNSHEGRISCLGLSSDGS-ALCTGS 363 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-----EEEEECCSCSSCCCCCCEEEECSSSS-EEEEEC
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-----eEEEEecccCCCCCceEEEEECCCCC-EEEEee
Confidence 000000122347889999876 67888899999999764321 11111122357999999999999886 688999
Q ss_pred CCCeEEEEEccc
Q 023500 268 DDGMIKIWELAN 279 (281)
Q Consensus 268 ~Dg~v~iw~~~~ 279 (281)
.|+.|+||++..
T Consensus 364 ~D~~i~iW~~~~ 375 (380)
T 3iz6_a 364 WDKNLKIWAFSG 375 (380)
T ss_dssp TTSCEEEEECCS
T ss_pred CCCCEEEEecCC
Confidence 999999999875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=266.11 Aligned_cols=249 Identities=19% Similarity=0.264 Sum_probs=188.8
Q ss_pred CccceeEEEEcCCCCEEEEeeC------CCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASF------DATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 73 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~------d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~ 73 (281)
|.+.|++++|+|||++||+|+. |+.+++|+..++.. .......+|...|.+++|+|++. +++++.|++|++
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEE
Confidence 8899999999999999999997 77899998655431 12234456899999999999875 556788999999
Q ss_pred EEecCCCeeE-EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 74 WEVMPGNEFE-CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 74 w~~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
||+..++... ......+|...|++++|+|++++|++++.|++|++|+++... ++..+ .+|...|.+++|+
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----~~~~~----~~h~~~v~~v~~s 190 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----VLKSY----NAHSSEVNCVAAC 190 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-----EEEEE----CCCSSCEEEEEEC
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-----EEEEE----cCCCCCEEEEEEc
Confidence 9997654321 123445899999999999999999999999999999887542 23333 4789999999999
Q ss_pred cCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCC
Q 023500 153 AKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 153 ~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~ 229 (281)
|++. ++++++.|+.|++||++..++.... ....+...+.++.|+|+ .++++++.|+.+++|+.....
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~----------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRI----------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBC----------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeee----------eeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 9875 7899999999999998654322111 01134567889999985 368888999999999775421
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|...|++++|+|++.++|++|+.|+.|+|||+..
T Consensus 261 ---------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 261 ---------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp ---------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ---------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 12334578899999999999877899999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=261.81 Aligned_cols=254 Identities=29% Similarity=0.446 Sum_probs=194.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.|++++|+|+|++||+|+.|+.|+|||..+++ .+..+.+|...|.+++|+|++.+|++++.|++|++||+..+. +
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~ 199 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---C 199 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---e
Confidence 48999999999999999999999999987764 467788999999999999999999999999999999997654 2
Q ss_pred eEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee---eccCCccccEEEEEEccCCCEEEE
Q 023500 85 VSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
...+. +...+.+++|+| ++.++++++.|++|++|+++... .+..+. ....+|...|.+++|+|++++|++
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 33333 456799999999 88999999999999999886542 222221 122478999999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCC-cccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGY-ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
|+.|+.|++||+........... ........+ ..|...|.++++++++ ++++++.|+.+++|+.....
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~--------- 343 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--------- 343 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---------
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------
Confidence 99999999999864322111000 000111222 2477889999999876 68899999999999765421
Q ss_pred eeeeccCCCCCeeEEEEcCC-----CCeeEEEeCCCCeEEEEEccc
Q 023500 239 LLKKEKAHDMDVNSVQWSPG-----ERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~-----~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......+|...|++++|++. ...+|++|+.||.|+||++..
T Consensus 344 ~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 344 PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 22344689999999999873 235789999999999999865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=251.39 Aligned_cols=245 Identities=29% Similarity=0.544 Sum_probs=196.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|++++||+|+.|+.|++|+..+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+..+.
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~- 98 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK- 98 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-
Confidence 78999999999999999999999999999987765 356778999999999999999999999999999999997654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++..+.+|...|.++.|+|+++++++++.|++|++|+++... ++..+ ..|...|.+++|+|++.+|+++
T Consensus 99 --~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~----~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 99 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----CLKTL----PAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp --EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECTTSSEEEEE
T ss_pred --EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----EEEEe----cCCCCcEEEEEEcCCCCEEEEE
Confidence 456778899999999999999999999999999999887542 23323 3688899999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++||+...+. ...+...+..++..+.|+|++ ++++++.|+.+++|+.... ...
T Consensus 168 ~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~ 227 (312)
T 4ery_A 168 SYDGLCRIWDTASGQC-----------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------KCL 227 (312)
T ss_dssp ETTSCEEEEETTTCCE-----------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEE
T ss_pred eCCCcEEEEECCCCce-----------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEE
Confidence 9999999999864321 122222345678889999876 6888889999999977542 122
Q ss_pred eeccCCCCCee--EEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 241 KKEKAHDMDVN--SVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 241 ~~~~~h~~~v~--~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
.....|...+. ...+++.+..++++|+.||.|++||+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 23334544332 23455444557889999999999998653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=251.16 Aligned_cols=244 Identities=20% Similarity=0.291 Sum_probs=196.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++|+|++++|++|+.|+.|++||..+++ ++..+.+|.+.|.+++|+|++.+|++|+.|++|++||+..+..
T Consensus 54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 67889999999999999999999999999987764 4678889999999999999999999999999999999976543
Q ss_pred eEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc--CCCEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKL 158 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l 158 (281)
....+.+|...|.+++|+| ++..+++|+.|++|++|++..... ...+ ..+|...+..++|+| ++.+|
T Consensus 132 --~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~~l 201 (304)
T 2ynn_A 132 --LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTL---TTGQERGVNYVDYYPLPDKPYM 201 (304)
T ss_dssp --EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEE---ECCCTTCEEEEEECCSTTCCEE
T ss_pred --hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----ccee---ccCCcCcEEEEEEEEcCCCCEE
Confidence 3566789999999999999 568999999999999999865421 1112 135667789999987 66799
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++|+.|++|++||++... ....+. .|...+.++.|+|++ ++++++.|+.+++|+....
T Consensus 202 ~s~s~D~~i~iWd~~~~~-----------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--------- 260 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKS-----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------- 260 (304)
T ss_dssp EEEETTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------
T ss_pred EEEcCCCeEEEEeCCCCc-----------cceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------
Confidence 999999999999986432 222333 478889999999976 6889999999999976542
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCe-eEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERR-LLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~-~~~s~~~Dg~v~iw~~~~ 279 (281)
........|...+++++|+|++.. ++++|+. ..+.+|++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC-
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEEEecc
Confidence 123344578889999999998754 4666664 5566888765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=254.84 Aligned_cols=244 Identities=20% Similarity=0.313 Sum_probs=193.6
Q ss_pred CccceeEEEE-----cC-CCCEEEEeeCCCcEEEEecCCCc-----eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc
Q 023500 2 HTRTVRSCAW-----SP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNASGTLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~-----~~-~~~~l~tg~~d~~i~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 70 (281)
|.+.|++++| ++ ++++||+|+.|+.|+|||....+ ..+...+.+|...|.+++|+|++.+|++|+.|++
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 8899999999 77 89999999999999999976432 2346678899999999999999999999999999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEE
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
|++||+..+. ....+.+|...|.+++|+|++.++++++.|++|++|++... +.... ....+|...|.+++
T Consensus 100 v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~------~~~~~-~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 100 LRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE------CKFSS-AEKENHSDWVSCVR 169 (343)
T ss_dssp EEEEETTSSC---EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC------EEEEC-CTTTSCSSCEEEEE
T ss_pred EEEEECCCCc---EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC------ceeee-ecccCCCceeeeee
Confidence 9999997664 35677899999999999999999999999999999988632 11111 12236888999999
Q ss_pred EccCC----------CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCc
Q 023500 151 FNAKG----------DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219 (281)
Q Consensus 151 ~~~~~----------~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~ 219 (281)
|+|++ .+|++++.|+.|++||... .....+ ..|...|.+++|+|++ ++++++.|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------------QIRYTF-KAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------------EEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcCCC------------ceeEEE-cCccccceEEEECCCCCEEEEEcCCCe
Confidence 99986 6899999999999998532 111222 2478899999999987 6889999999
Q ss_pred EEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|+...... . ... ..+...|++++|+|+++ +++ ++.|+.|++|++..
T Consensus 237 v~iwd~~~~~~----~-~~~----~~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 237 LLIWDILNLTY----P-QRE----FDAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMT 285 (343)
T ss_dssp EEEEESSCCSS----C-SEE----EECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSS
T ss_pred EEEEECCCCcc----c-cee----ecCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCC
Confidence 99998732111 1 011 12345699999999865 454 55688999999854
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=278.91 Aligned_cols=258 Identities=21% Similarity=0.345 Sum_probs=199.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----CcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----KSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~ 77 (281)
|.+.|++++|+|+|++||+|+.|+.|+|||..+++......+.+|.+.|.+++|+|+|++|++++.+ ++|++||.
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-
Confidence 7889999999999999999999999999998655444556788999999999999999999998875 37888874
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+. ....+.+|...|++++|+|++. .+++++.|++|++|+.... ++...+ .+|...|.+++|+|+++
T Consensus 137 -~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-----~~~~~l----~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 137 -GT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----KFKSTF----GEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp -CC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----EEEEEE----CCCSSCEEEEEECTTSS
T ss_pred -CC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-----eEeeee----ccccCceEEEEECCCCC
Confidence 22 2456789999999999999987 5999999999999986432 233333 47999999999999999
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
+|++|+.|++|++||...+........... ....|...|.+++|+|++ ++++++.|+.+++|+...........
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~-----~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSL-----KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECBCTTS-----SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEECCCCcEeeeeccccc-----cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 999999999999999764322110000000 001478899999999986 68899999999999875422110000
Q ss_pred ----------------------------------ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 ----------------------------------YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ----------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.........+|...|++++|+|+++ +|++++.|+.|++||+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDIST 355 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCC
Confidence 0011223457999999999999876 578999999999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=254.68 Aligned_cols=256 Identities=26% Similarity=0.402 Sum_probs=206.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|++++||+|+.|+.|+||+........+..+.+|...|++++|+|+ +++|++++.|+.|++||+..+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 889999999999999999999999999999876666677888999999999999987 999999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc----
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA---- 153 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 153 (281)
. ......+..|...|.+++|+|+ +.++++++.|+.|++|++....... ... ..+|...|.+++|+|
T Consensus 90 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~----~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 90 R-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PII----IDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp E-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC---EEE----EECCTTCEEEEEECCCC--
T ss_pred c-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee---eEE----ecCCCCceEEEEEcCcccc
Confidence 3 2356677889999999999999 8999999999999999987653211 111 236888999999999
Q ss_pred ---------CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC----ceeeecCCCCcE
Q 023500 154 ---------KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE----GIIASGAADDSV 220 (281)
Q Consensus 154 ---------~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~d~~~ 220 (281)
++.+|++++.|+.|++||+...... ......+ ..|...+.+++|+|+ .++++++.|+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 6899999999999999987633211 1112222 247889999999997 468889999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++|+...... ...........|...|++++|+|++. +|++++.||.|++|++.
T Consensus 234 ~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 234 IIWTQDNEQG----PWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEEESSTTS----CCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEE
T ss_pred EEEeCCCCCc----cceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCC
Confidence 9998764321 11112223345888999999999886 57788889999999986
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=246.65 Aligned_cols=267 Identities=20% Similarity=0.327 Sum_probs=207.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~ 77 (281)
|.+.|++++|+|++++||+|+.|+.|++|+..++. ......+.+|...|.+++|+| ++.+|++++.|++|++||+.
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 88999999999999999999999999999986542 345677889999999999999 69999999999999999997
Q ss_pred CCC------eeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCc-ee---eeeeeeccCCcccc
Q 023500 78 PGN------EFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNW-HC---VQTISESNNGHSST 145 (281)
Q Consensus 78 ~~~------~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~-~~---~~~~~~~~~~h~~~ 145 (281)
.+. .......+.+|...|.+++|+|+ +.++++++.|+.|++|++........ .. .........+|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 653 12456778899999999999999 99999999999999999876532211 10 11111122367788
Q ss_pred EEEEEEccC---CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-----eeeecCCC
Q 023500 146 IWALSFNAK---GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-----IIASGAAD 217 (281)
Q Consensus 146 v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~d 217 (281)
+.+++|+|+ +..|++++.|+.+.+|+...... .....+ ..|...|.++.|+|++ ++++++.|
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---------HVAAKL-PGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---------EEEEEC-CCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---------eeeeec-CCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 999999997 88999999999997776543221 112222 2478899999999985 79999999
Q ss_pred CcEEEEecccCCCcC-------------------------------------CccceeeeeeccCCCCCeeEEEEcCCCC
Q 023500 218 DSVQFFVESKDDLID-------------------------------------GPSYKMLLKKEKAHDMDVNSVQWSPGER 260 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 260 (281)
+.+++|+........ ............+|...|++++|+|+++
T Consensus 240 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 240 GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 999999876421100 0001123445567999999999999875
Q ss_pred eeEEEeCCCCeEEEEEccc
Q 023500 261 RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 261 ~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|++++.||.|+||++..
T Consensus 320 -~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 320 -ILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp -CEEEEETTSCEEEEEECT
T ss_pred -EEEEecCCCcEEEEecCc
Confidence 688999999999999875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=247.04 Aligned_cols=241 Identities=27% Similarity=0.389 Sum_probs=193.7
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
|++.|++++|+|++ ++|++|+.|+.|++|+..... ..++..+.+|...|.+++|+|+|++|++|+.|++|++||+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 88999999999965 899999999999999875322 23467889999999999999999999999999999999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC---
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--- 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 154 (281)
.++ +...+.+|...|.+++|+|++.++++++.|++|++|++... ++..+ .+|...|.++.|+|.
T Consensus 96 ~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------~~~~~----~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 96 TGE---TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------CLATL----LGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTE---EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC------EEEEE----CCCSSCEEEEEECCC---
T ss_pred CCC---eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------eEEEE----eccCCcEEEEEEccCCCC
Confidence 654 45678899999999999999999999999999999988532 23333 378899999999985
Q ss_pred ---CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 155 ---GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 155 ---~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
+..|++++.|+.|++||+...+ ....+ ..|...|.+++++|++ ++++++.|+.+++|+.....
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~-----------~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~- 229 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQ-----------IEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK- 229 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTE-----------EEEEE-CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-
T ss_pred CCCccEEEEEeCCCEEEEEECCcch-----------hheee-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 4489999999999999986422 12222 2478899999999986 68889999999999775421
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...... +..+|.+++|+|++. ++++++ ++.+++|++..
T Consensus 230 --------~~~~~~-~~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~ 267 (319)
T 3frx_A 230 --------AMYTLS-AQDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDP 267 (319)
T ss_dssp --------EEEEEE-CCSCEEEEEECSSSS-EEEEEE-TTEEEEEEETT
T ss_pred --------EEEEec-CCCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCc
Confidence 122222 346799999999875 465555 55699998753
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=267.71 Aligned_cols=260 Identities=22% Similarity=0.344 Sum_probs=200.8
Q ss_pred CccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.|++++|+|+++ +|++|+.|++|++||..+. ++...+.+|...|++++|+|+|++|++|+.|++|++||+..++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 788999999999987 5999999999999997654 4577889999999999999999999999999999999987664
Q ss_pred eeEEeEeec-------CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCcee--------e-------------
Q 023500 81 EFECVSVLQ-------GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC--------V------------- 132 (281)
Q Consensus 81 ~~~~~~~~~-------~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~--------~------------- 132 (281)
. ...+. +|...|.+++|+|++++|++++.|++|++|+++......... .
T Consensus 224 ~---~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 224 K---TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp E---EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred E---eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 3 33442 799999999999999999999999999999987532100000 0
Q ss_pred -------------eeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc
Q 023500 133 -------------QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199 (281)
Q Consensus 133 -------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (281)
........+|...|++++|+|++++|++++.|++|++||+...... ..+...|...
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~-----------~~~~~~h~~~ 369 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-----------RVFPDVHATM 369 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------ECSSCSCSSC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee-----------eecccCCcce
Confidence 0001122479999999999999999999999999999998643221 1111246788
Q ss_pred eEEEEeCCCceeeecCCCCcEEEEecccCCCcCCc---------cce--------e----------e-----eeeccCCC
Q 023500 200 IFSVHWSREGIIASGAADDSVQFFVESKDDLIDGP---------SYK--------M----------L-----LKKEKAHD 247 (281)
Q Consensus 200 v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---------~~~--------~----------~-----~~~~~~h~ 247 (281)
+.++.+++++.+++++.|+.+++|+.......... ... . + .. ...|.
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~-~~~~~ 448 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-EVPIS 448 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-EEECS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCcee-eeecC
Confidence 99999999999999999999999976543211100 000 0 0 00 11256
Q ss_pred CCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 248 MDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 248 ~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+++++|+|+++ ++++|+.|+.|+||++..
T Consensus 449 ~~v~~va~spdg~-~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 449 YNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCEEEEEECTTSC-EEEEEETTSEEEEEEEET
T ss_pred CCceEEEEeCCCC-EEEEeCCCCeEEEEEccC
Confidence 7799999999876 688999999999999854
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=261.95 Aligned_cols=257 Identities=15% Similarity=0.166 Sum_probs=191.1
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++++|+| ++++||+|+.||.|+|||..+++......+.+|.+.|++++|+| ++.+|+|||.|++|++||+...
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 567899999999 56799999999999999987766555667789999999999998 7899999999999999998643
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 158 (281)
..........+...+.+++|+|++.++++|+.|+.|++|+++.. .+.. ..+|...|.+++|+|++. +|
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~----~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 198 -ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK------ELWN----LRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC------BCCC----SBCCSSCEEEEEECTTCSSEE
T ss_pred -ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc------eeEE----EecccceEEeeeecCCCceEE
Confidence 22222222334456789999999999999999999999987542 1222 247899999999999876 78
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC-----
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID----- 232 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~----- 232 (281)
++|+.|+.|++||+........ ......|...|.+++|+|++ ++++++.|+.+++|+........
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~---------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKAS---------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSC---------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred EEecCcceeeEEecccccccce---------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 8999999999999864321110 01112477889999999876 68899999999999865321100
Q ss_pred ---------------------------------------Cccc--------eeeeeeccCCCCCeeEE-EEcCCCCeeEE
Q 023500 233 ---------------------------------------GPSY--------KMLLKKEKAHDMDVNSV-QWSPGERRLLA 264 (281)
Q Consensus 233 ---------------------------------------~~~~--------~~~~~~~~~h~~~v~~~-~~~~~~~~~~~ 264 (281)
.... .........|...|.++ +|+|++. +|+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~-~la 416 (435)
T 4e54_B 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD-TLA 416 (435)
T ss_dssp CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSS-CEE
T ss_pred cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCC-EEE
Confidence 0000 00011123577778887 6999875 577
Q ss_pred EeCCCCeEEEEEcccC
Q 023500 265 SASDDGMIKIWELANT 280 (281)
Q Consensus 265 s~~~Dg~v~iw~~~~~ 280 (281)
+|+ |+.|+||++...
T Consensus 417 sg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 417 SAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEC-SSEEEECCCC--
T ss_pred EEc-CCcEEEEECCcC
Confidence 776 889999998653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=243.37 Aligned_cols=242 Identities=29% Similarity=0.536 Sum_probs=193.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.+++|+|++++|++|+.|+.|++||..+++ ++..+.+|...|.+++|+|++++|++|+.|++|++||+..+.
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~- 140 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK- 140 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-
Confidence 77889999999999999999999999999987764 467888999999999999999999999999999999997654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+...+..|...|.++.|+|++.++++++.|+.|++|++.... .+..+ ...+...+..++|+|++++|+++
T Consensus 141 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 141 --CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTL---IDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEE---CCSSCCCEEEEEECTTSSEEEEE
T ss_pred --EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEE---eccCCCceEEEEECCCCCEEEEE
Confidence 456778899999999999999999999999999999886542 22222 22456778999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcc---eE-EEEeCCCceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT---IF-SVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+.|+.|++||+...+. ...+.+ |... +. ........++++++.|+.+++|+....
T Consensus 211 ~~d~~i~iwd~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------- 269 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKC-----------LKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--------- 269 (312)
T ss_dssp ETTTEEEEEETTTTEE-----------EEEECS-SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---------
T ss_pred cCCCeEEEEECCCCcE-----------EEEEEe-cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---------
Confidence 9999999999864332 111111 1111 11 222233557899999999999977542
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeC--CCCeEEEEEcc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWELA 278 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~--~Dg~v~iw~~~ 278 (281)
.......+|...|.+++|+|++. ++++++ .|+.|++|+..
T Consensus 270 ~~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 EIVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred hhhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecCC
Confidence 23345568999999999999876 566765 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=252.43 Aligned_cols=256 Identities=25% Similarity=0.402 Sum_probs=193.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC------------------CCeeEEEEcCCCCEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE------------------NEVKSVSWNASGTLLA 63 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~------------------~~v~~v~~~~~~~~l~ 63 (281)
|...|++++|+|+|++||+|+ |+.++||+..+++. +..+.+|. ..|.+++|+|+|++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE--EEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE--EEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 788999999999999999987 68899999877653 33444332 2489999999999999
Q ss_pred EecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 64 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 64 s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
+|+.|++|++||+... +....+.+|...|.+++|+|++..+++++.|++|++|++.... +...+. +.
T Consensus 140 s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~-----~~ 206 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----CSLTLS-----IE 206 (393)
T ss_dssp EEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEE-----CS
T ss_pred EEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----eEEEEE-----cC
Confidence 9999999999998755 3466788999999999999999999999999999999886542 233332 34
Q ss_pred ccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEE
Q 023500 144 STIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQ 221 (281)
Q Consensus 144 ~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~ 221 (281)
..+.+++|+| ++.+|++|+.|+.|++||......... ..........|...|.++.|++++ ++++++.|+.++
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-----LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-----EC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe-----ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 6789999999 889999999999999999864432110 000000112477889999999876 688999999999
Q ss_pred EEecccCCCcCC---ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDG---PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|+......... +..........+|...|.+++|+|++. +|++|+.|+.|++||+..
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTT
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCC
Confidence 998754321110 001112234467999999999999875 678999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=273.30 Aligned_cols=253 Identities=19% Similarity=0.389 Sum_probs=194.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|+|||..++. +...+.+|...|.+++|+|++++|++||.|++|++||+.....
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV--STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 78899999999999999999999999999987764 4677889999999999999999999999999999999754332
Q ss_pred eEEeEeecCCccceeEEEecCCC--CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
........+|...|.+++|+|++ ..+++++.|++|++|++.... +... ..+|...|.+++|+|++++|+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~~----~~~h~~~v~~v~~spdg~~l~ 577 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRST----LAGHTGYVSTVAVSPDGSLCA 577 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEEE----ECCCSSCEEEEEECTTSSEEE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEEE----EcCCCCCEEEEEEeCCCCEEE
Confidence 22222235788899999999986 579999999999999886542 2222 247999999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccce--
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK-- 237 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-- 237 (281)
+|+.|+.|++||+...+. +..+ .+...+.+++|+|++.+++++.++.+++|+.............
T Consensus 578 sg~~Dg~i~iwd~~~~~~-----------~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 644 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKK-----------LYSL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLK 644 (694)
T ss_dssp EEETTSBCEEEETTTTEE-----------EECC--BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC
T ss_pred EEeCCCeEEEEECCCCce-----------EEEe--cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccc
Confidence 999999999999864432 1111 2356789999999998888888888999987653221100000
Q ss_pred e--e------eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 M--L------LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~--~------~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. . ......+...+++++|+|+++ +|++|+.||.|+||++..
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 645 AEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred cccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence 0 0 000011223478999999886 578999999999999863
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=258.26 Aligned_cols=263 Identities=17% Similarity=0.274 Sum_probs=196.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++||+|+.|+.|+||+..++...++..+.+|...|.+++|+|++++|++++.|++|++||+..+..
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 46789999999999999999999999999998775566788899999999999999999999999999999999976652
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..+...+.+|...|.+++|+|+++++++++.|+.|++|+++.... +.....+. ..|...|.+++|+|++.+|+++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--WWVSKHLK---RPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEEC---SSCCSCEEEEEECTTSSEEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--ceeeeEee---cccCCCeEEEEEcCCCCEEEEE
Confidence 334566788999999999999999999999999999998865421 11122221 2388999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCC-------cccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC
Q 023500 162 SDDLTIKIWGADITRMQSGDGY-------ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
+.|+.|++||+........... ........+ .|...+.+++|+|++ ++++++.|+.+++|+......
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--- 239 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ--- 239 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS---
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC---
Confidence 9999999999853321111000 001122222 578889999999976 588899999999998765321
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..........|..+|++++|+|+++ +|++++.|+.+ +|+..
T Consensus 240 --~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 240 --PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp --CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred --cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence 0111334567889999999999875 67788866666 66654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=248.40 Aligned_cols=262 Identities=16% Similarity=0.265 Sum_probs=202.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|++||..+++......+.+|...|.+++|+|++++|++++.|+.|++||+.....
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 130 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 130 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc
Confidence 77899999999999999999999999999998776555556678999999999999999999999999999999987664
Q ss_pred eEEe-EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC-------------CceeeeeeeeccCCccccEE
Q 023500 82 FECV-SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD-------------NWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 82 ~~~~-~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~-------------~~~~~~~~~~~~~~h~~~v~ 147 (281)
.... ....+|...|.+++|+|+++++++++.|+.|++|++...... ..+.+.. ..+|...|.
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~ 206 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE----SSSSCGWVH 206 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE----CCCCSSCEE
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe----cCCCCCeEE
Confidence 3333 334678899999999999999999999999999997532111 1112222 236888999
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+++|+|++.+|++++.|+.|++||.+..+ ....+. .+..++.+++|++++.+++++.|+.+++|+...
T Consensus 207 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 207 GVCFSANGSRVAWVSHDSTVCLADADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEECSSSSEEEEEETTTEEEEEEGGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eeEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 99999999999999999999999986432 222222 367789999999988777667999999998765
Q ss_pred --CCC--cC----------------------Cccceee------eeeccCCCCCeeEEEEcCCCC---eeEEEeCCCCeE
Q 023500 228 --DDL--ID----------------------GPSYKML------LKKEKAHDMDVNSVQWSPGER---RLLASASDDGMI 272 (281)
Q Consensus 228 --~~~--~~----------------------~~~~~~~------~~~~~~h~~~v~~~~~~~~~~---~~~~s~~~Dg~v 272 (281)
+.. .. ....... .....+|..+|++++|++.+. .+|++|+.||.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 275 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp TTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 210 00 0000000 112248999999999875543 578999999999
Q ss_pred EEEEccc
Q 023500 273 KIWELAN 279 (281)
Q Consensus 273 ~iw~~~~ 279 (281)
++|++..
T Consensus 355 ~~W~~~~ 361 (372)
T 1k8k_C 355 SIWDVRS 361 (372)
T ss_dssp EEEEHHH
T ss_pred EEEEecC
Confidence 9999864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=263.91 Aligned_cols=234 Identities=33% Similarity=0.591 Sum_probs=196.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++|++|+.|+.+++|+... ..+..+.+|...|.+++|+|+|++|++++.|+.|++|+.. +
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-- 416 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-- 416 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C--
Confidence 678899999999999999999999999999643 3466788999999999999999999999999999999953 2
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+....+.+|...|.+++|+|++.++++++.|++|++|+.... .+..+ .+|...|.+++|+|++++|+++
T Consensus 417 -~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~----~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 417 -QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTL----TGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEE----ECCSSCEEEEEECTTSCEEEEE
T ss_pred -CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEE----cCCCCCEEEEEEcCCCCEEEEE
Confidence 245667899999999999999999999999999999986432 23333 3688999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++|+... +....+. .|...|.+++|+|++ ++++++.|+.+++|+... ...
T Consensus 486 ~~d~~i~iw~~~~------------~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~----------~~~ 542 (577)
T 2ymu_A 486 SDDKTVKLWNRNG------------QLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLL 542 (577)
T ss_dssp ETTSEEEEEETTS------------CEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEE
T ss_pred eCCCEEEEEcCCC------------CEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC----------CEE
Confidence 9999999998542 1122232 478899999999986 688899999999996432 123
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
....+|...|++++|+|+++ +|+|++.|+.|++||
T Consensus 543 ~~~~~h~~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 543 QTLTGHSSSVWGVAFSPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence 44568999999999999986 577999999999997
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=257.37 Aligned_cols=267 Identities=17% Similarity=0.259 Sum_probs=187.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|++++|+|++++|++|+.|+.|++||..++. ..+...+.+|...|.+++|+|++++|++++.|+.|++||+....
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 78899999999999999999999999999987665 34566778899999999999999999999999999999997665
Q ss_pred eeEEeEeecC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc---------eeeeeeeeccCCccccEEEEE
Q 023500 81 EFECVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW---------HCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 81 ~~~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~~~ 150 (281)
.......+.+ |...|.+++|+|+++++++++.|++|++|++........ .......... +|...|.+++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 3334556666 999999999999999999999999999999853221100 0011122222 7889999999
Q ss_pred EccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCC
Q 023500 151 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 151 ~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 230 (281)
|+|++++|++++.|+.|++||+....... .....+ ..|..++.+++|++++.+++++.++.+.+|.......
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 284 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPP-------RALITV-KLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGW 284 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCE-------EECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcc-------eeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCce
Confidence 99999999999999999999986543210 001112 2367889999999988655555555555775542110
Q ss_pred c-----CCc---cc-----------------------eee------------eeeccCCCCCeeEEEEcCCCCe---eEE
Q 023500 231 I-----DGP---SY-----------------------KML------------LKKEKAHDMDVNSVQWSPGERR---LLA 264 (281)
Q Consensus 231 ~-----~~~---~~-----------------------~~~------------~~~~~~h~~~v~~~~~~~~~~~---~~~ 264 (281)
. ..+ .. ... ......|...|+++.+.+.+.. .|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~ 364 (377)
T 3dwl_C 285 AHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFT 364 (377)
T ss_dssp CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEE
T ss_pred EEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEE
Confidence 0 000 00 000 0112349999999997765433 588
Q ss_pred EeCCCCeEEEEEc
Q 023500 265 SASDDGMIKIWEL 277 (281)
Q Consensus 265 s~~~Dg~v~iw~~ 277 (281)
|||.||.|+|||+
T Consensus 365 s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 365 SSGTDGRVVLWTL 377 (377)
T ss_dssp EEETTSEEEEECC
T ss_pred eecCCCcEEEecC
Confidence 9999999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=245.67 Aligned_cols=261 Identities=18% Similarity=0.308 Sum_probs=206.1
Q ss_pred CCccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 1 ~h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.|...|++++|+|++++||+|+.|+.|++|+..+++.+.+..+.+|...|.+++|+|++++|++++.|+.|++||+...+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 37899999999999999999999999999999887655788889999999999999999999999999999999997553
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
......+..|...|.+++|+|+++++++++.|+.|++|+++.... .... .....+|...|.+++|+|++.+|++
T Consensus 86 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 86 -WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVC---KHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp -EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEE---EEECTTCCSCEEEEEECTTSSEEEE
T ss_pred -eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--ceee---eeeecccCCCeeEEEEcCCCCEEEE
Confidence 233445577889999999999999999999999999998875431 1111 1222468889999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCC-------CcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC
Q 023500 161 CSDDLTIKIWGADITRMQSGDG-------YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
++.|+.+++||+.......... .........+. .|...+.++.|++++ ++++++.|+.+++|+.....
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--- 235 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--- 235 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---
Confidence 9999999999975322111100 00112222222 467889999999876 78889999999999875421
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|..+|++++|+|++. +++++ .|+.|++|++..
T Consensus 236 ------~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 ------AVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ------EEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred ------eeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence 2333457888999999999875 56666 899999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=246.08 Aligned_cols=255 Identities=14% Similarity=0.197 Sum_probs=196.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|++||..+++ ++..+.+|...|.+++|+|++++|++++.|++|++||+..+..
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 78899999999999999999999999999987664 4667889999999999999999999999999999999976543
Q ss_pred eEEeEeecC---C---------------------ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee
Q 023500 82 FECVSVLQG---H---------------------AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 82 ~~~~~~~~~---~---------------------~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
+..+.. | ...+.+++|+|++.++++++.|+.|++|++.... ....+
T Consensus 216 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~-- 285 (420)
T 3vl1_A 216 ---IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----QTIQL-- 285 (420)
T ss_dssp ---EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----EEEEE--
T ss_pred ---eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----eeEEc--
Confidence 333332 2 3456667778999999999999999999986542 22222
Q ss_pred ccCCccccEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCC
Q 023500 138 SNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216 (281)
Q Consensus 138 ~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (281)
..+|...|.+++|+|++. +|++|+.||.|++||+..... ....+...+...+.++.+.+..++++++.
T Consensus 286 -~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~ 354 (420)
T 3vl1_A 286 -PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGF 354 (420)
T ss_dssp -CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETT
T ss_pred -ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecC
Confidence 236788999999999998 999999999999999864321 12233344677888888877778999999
Q ss_pred CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC---eeEEEeCCCCeEEEEEcccC
Q 023500 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWELANT 280 (281)
Q Consensus 217 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~s~~~Dg~v~iw~~~~~ 280 (281)
|+.+++|+.....................|...|.+++|+|+++ .++ +++.+|.+++|++.++
T Consensus 355 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~-a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 355 DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL-EVGKNNFCALYNLSNP 420 (420)
T ss_dssp TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE-EEETTTEEEEEESCC-
T ss_pred CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE-EEcCCceEEEEeccCC
Confidence 99999998765221110000000112346788999999999987 555 5556899999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=242.86 Aligned_cols=257 Identities=13% Similarity=0.164 Sum_probs=193.9
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|++ ++||+|+.|+.|+|||..+++........+|...|.+++|+| ++.+|++++.|+.|++||+..
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~- 150 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG- 150 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-
Confidence 77899999999999 999999999999999998776554444457999999999999 789999999999999999974
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 158 (281)
..........+|...|.+++|+|++.++++++.|+.|++|+++.. .+..+ .+|...|.+++|+|++. +|
T Consensus 151 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~----~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH------EIFKE----KLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC------EEEEE----ECSSSCEEEEEECSSCTTEE
T ss_pred CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC------EEEEe----ccCCCcEEEEEECCCCCCEE
Confidence 332223333445588999999999999999999999999998421 23333 36889999999999998 99
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-Cc-eeeecCCCCcEEEEecccCCCcC----
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGAADDSVQFFVESKDDLID---- 232 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~~~---- 232 (281)
++|+.|+.|++||+...... ....... .|...+.++.|++ ++ ++++++.|+.+++|+........
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~-------~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDK-------NSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp EEEETTSEEEEEEGGGCCST-------TCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred EEEeCCCEEEEEeCCCCCcc-------cceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 99999999999998642210 0112222 3778899999998 65 67888889999999865322100
Q ss_pred --------------------------------------Ccc------ceeeeeeccC--CCCCeeEEEEcCCCCeeEEEe
Q 023500 233 --------------------------------------GPS------YKMLLKKEKA--HDMDVNSVQWSPGERRLLASA 266 (281)
Q Consensus 233 --------------------------------------~~~------~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~s~ 266 (281)
+.. .......... |...+..++|+|+++ +|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~ 370 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASG 370 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc-EEEEe
Confidence 000 0001112222 566778889999886 57788
Q ss_pred CCCCeEEEEEcccC
Q 023500 267 SDDGMIKIWELANT 280 (281)
Q Consensus 267 ~~Dg~v~iw~~~~~ 280 (281)
+ |+.|+|||+..+
T Consensus 371 s-d~~i~iw~~~~~ 383 (383)
T 3ei3_B 371 M-GFNILIWNREDT 383 (383)
T ss_dssp E-TTEEEEEECC--
T ss_pred c-CCcEEEEecCCC
Confidence 6 999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=261.21 Aligned_cols=245 Identities=26% Similarity=0.404 Sum_probs=195.6
Q ss_pred CccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
|++.|++++|+|++ ++|+||+.|+.|+||+..... ......+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 89999999999975 799999999999999976432 12356788999999999999999999999999999999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC--
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-- 155 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-- 155 (281)
.+. +...+.+|...|.+++|+|++.++++++.|++|++|+.... +...+.....+|...|.+++|+|++
T Consensus 461 ~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 461 AGV---STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE------CKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp TTE---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------EEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CCc---ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC------cceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 653 45677899999999999999999999999999999976432 2223333345789999999999986
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
..|++|+.|++|++||+...+ ....+ ..|...|.+++++|++ ++++++.|+.+++|+.....
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~-----------~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~----- 594 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCK-----------LRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK----- 594 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCC-----------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-----
T ss_pred ceEEEEeCCCeEEEEECCCCc-----------EEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence 589999999999999986332 11222 2478899999999976 68889999999999775421
Q ss_pred cceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. +... .+...|++++|+|++. ++++ +.|+.|+|||+..
T Consensus 595 ---~-~~~~-~~~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 595 ---K-LYSL-EANSVIHALCFSPNRY-WLCA-ATEHGIKIWDLES 632 (694)
T ss_dssp ---E-EECC-BCSSCEEEEEECSSSS-EEEE-EETTEEEEEETTT
T ss_pred ---e-EEEe-cCCCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCC
Confidence 1 1122 2446799999999864 4544 4577799999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=249.54 Aligned_cols=255 Identities=20% Similarity=0.334 Sum_probs=201.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~ 78 (281)
|...|++++|+|++++|++|+.|+.|++|+.... ....+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+..
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 6788999999999999999999999999998661 12356788899999999999998 89999999999999999976
Q ss_pred CC------eeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee--ccCCccccEEEE
Q 023500 79 GN------EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE--SNNGHSSTIWAL 149 (281)
Q Consensus 79 ~~------~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~ 149 (281)
.. .........+|...|.+++|+|+ +.++++++.|+.|++|++.... .+..+.. ...+|...|.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQLSVV 220 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCCEEEE
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCceEEE
Confidence 54 22222334678899999999999 7899999999999999887542 2222221 112347889999
Q ss_pred EEccCC-CEEEEeeCCC---cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-C-ceeeecCCCCcEEEE
Q 023500 150 SFNAKG-DKLVSCSDDL---TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-E-GIIASGAADDSVQFF 223 (281)
Q Consensus 150 ~~~~~~-~~l~s~~~d~---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~~~d~~~~~~ 223 (281)
+|+|++ .+|++++.|+ .|++||++..... ...+...|...+.+++|+| + .++++++.|+.+++|
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 999997 6899999998 9999998643210 1111113678899999998 4 478899999999999
Q ss_pred ecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.... ........|...|++++|+|+++.+|++++.|+.|+||++...
T Consensus 291 d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 291 NPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 76532 1233445788999999999988568899999999999998753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=253.72 Aligned_cols=236 Identities=33% Similarity=0.603 Sum_probs=196.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++++.|+.|++|+..+. .+..+.+|...|.+++|+|++++|++++.|+.|++|+.. +
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-- 375 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-- 375 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C--
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C--
Confidence 7789999999999999999999999999997654 345678899999999999999999999999999999953 3
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+.+..+.+|...|++++|+|+++++++++.|+.|++|+... +.+..+ .+|...|++++|+|++++|+++
T Consensus 376 -~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~------~~~~~~----~~~~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 376 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTL----TGHSSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC------CEEEEE----ECCSSCEEEEEECTTSSEEEEE
T ss_pred -CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC------CEEEEe----cCCCCCeEEEEECCCCCEEEEE
Confidence 24566788999999999999999999999999999997432 122323 3688999999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++|+.... ....+. .|...+.+++|+|++ ++++++.|+.+++|+... ...
T Consensus 445 ~~d~~v~~w~~~~~------------~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----------~~~ 501 (577)
T 2ymu_A 445 SDDKTVKLWNRNGQ------------LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLL 501 (577)
T ss_dssp ETTSEEEEEETTSC------------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------CEE
T ss_pred cCCCEEEEEECCCC------------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------CEE
Confidence 99999999986421 112222 477889999999986 678888999999997532 123
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....+|...|++++|+|+++ +|++++.||.|+|||..
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT
T ss_pred EEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCC
Confidence 44568999999999999886 57899999999999964
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=249.23 Aligned_cols=261 Identities=23% Similarity=0.467 Sum_probs=204.7
Q ss_pred CccceeEEEEcCC-CCEEEEeeCCCcEEEEecCC--------CceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcE
Q 023500 2 HTRTVRSCAWSPS-GKLLATASFDATTCIWEDVG--------GDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSV 71 (281)
Q Consensus 2 h~~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v 71 (281)
|.+.|++++|+|+ +.+||+|+.||.|++|+... +...++..+.+|...|.+++|+|++. +|++|+.|++|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 7789999999997 68999999999999999864 22345678889999999999999988 99999999999
Q ss_pred EEEEecCCCe----eEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 72 WIWEVMPGNE----FECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 72 ~~w~~~~~~~----~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++|++..... ......+.+|...|.+++|+| ++.++++++.|+.|++|++...... +.+..+ .+|...|
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--~~~~~~----~~~~~~v 280 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTV----DAHTAEV 280 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--SCSEEE----ECCSSCE
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--cceeEe----ecCCCCe
Confidence 9999976321 223456778999999999999 6778999999999999998754211 112222 2688899
Q ss_pred EEEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEE
Q 023500 147 WALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFF 223 (281)
Q Consensus 147 ~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~ 223 (281)
.+++|+|++. +|++|+.||.|++||++... .....+. .|...+.++.|+|++ ++++++.|+.+++|
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----------~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLK----------LKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT----------SCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----------CCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 9999999987 68899999999999986421 1122222 377899999999976 58899999999999
Q ss_pred ecccCCCcCCc-----cceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 224 VESKDDLIDGP-----SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 224 ~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.......... .....+....+|...|++++|+|+++.++++++.||.|+||++..
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 88653211100 001234455678999999999999876899999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=243.90 Aligned_cols=263 Identities=18% Similarity=0.324 Sum_probs=197.1
Q ss_pred CccceeEEEEcCC----CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~----~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~ 76 (281)
|...|++++|+|+ +++|++|+.|+.|++||..+++ .+..+.+|...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 5678999999999 6799999999999999987664 4667889999999999999 8999999999999999999
Q ss_pred cCCCeeEEeEee---cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc-------------------eeeee
Q 023500 77 MPGNEFECVSVL---QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-------------------HCVQT 134 (281)
Q Consensus 77 ~~~~~~~~~~~~---~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~-------------------~~~~~ 134 (281)
..+.. ...+ .+|...|.+++|+|++.++++++.|+.|++|++........ .....
T Consensus 146 ~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 146 QTDTL---VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TTTEE---EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred ecCeE---EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 76543 3444 68999999999999999999999999999999875311000 00000
Q ss_pred eeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCC---CCcccceeEEeecccCcceEEEEeCCC--c
Q 023500 135 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD---GYASWRHLCTISGYHDRTIFSVHWSRE--G 209 (281)
Q Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 209 (281)
......+|...|.+++|+ +++|++++.|+.|++||.......... ..........+ ..|...+.++.|+++ +
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTS
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCC
Confidence 011123488999999998 679999999999999997644321110 00011112222 246677888888876 4
Q ss_pred -eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCC--CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 210 -IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH--DMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 210 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
++++++.|+.+++|+....... .........| ...|++++|+|+++ +|++++.||.|+|||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEec
Confidence 6888999999999987653221 1122233344 78999999999875 67899999999999985
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=263.69 Aligned_cols=257 Identities=26% Similarity=0.391 Sum_probs=207.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|.+.|++++|+|+|++|++|+.||.|+||+..++....+..+.+|.+.|++++|+|+ +++|++|+.||+|++||+..+
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 889999999999999999999999999999876666678889999999999999987 999999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc----
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA---- 153 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---- 153 (281)
. ......+.+|...|.+++|+|+ ++.+++++.|+.|++|++....... ... ..+|...|.+++|+|
T Consensus 88 ~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---~~~----~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 88 R-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PII----IDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp E-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---CEE----EECCSSCEEEEEECCCC--
T ss_pred c-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---eeE----eecCCCceEEEEecCcccc
Confidence 3 3356677889999999999999 8999999999999999987653211 111 236888999999999
Q ss_pred ---------CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC---c-eeeecCCCCcE
Q 023500 154 ---------KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---G-IIASGAADDSV 220 (281)
Q Consensus 154 ---------~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~~ 220 (281)
++..|++|+.||.|++||....... ......+ ..|..+|.+++|+|+ + ++++++.|+.+
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I 231 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTE-------EEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCccc-------ceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence 5889999999999999987643211 1122222 347889999999987 4 68899999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+....... ..........|...|++++|+|+++ ++++++.||.|++|++..
T Consensus 232 ~iwd~~~~~~~----~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 232 IIWTQDNEQGP----WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSSSC----CBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred EEecCCCCCCc----ceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence 99987653211 0111223356888999999999876 578999999999999863
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=232.39 Aligned_cols=240 Identities=17% Similarity=0.296 Sum_probs=198.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|++||..+++......+.+|...|.+++|+|++++|++++.|+.|++||+...+
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~- 174 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT- 174 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-
Confidence 6678999999999999999999999999999877655667788899999999999999999999999999999997553
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+.+|...+.+++|+|+++.+++++.|+.|++|++.... .+..+ .|...+.+++|+|++++|+++
T Consensus 175 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~-----~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 175 --LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-----DFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-----ECSSCEEEEEECTTSSEEEEE
T ss_pred --eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeee-----cCCCceEEEEECCCCCEEEEE
Confidence 456778899999999999999999999999999999887542 22222 256779999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||...... .. ...|...+.++.|++++ ++++++.|+.+++|+..... ..
T Consensus 243 ~~~~~i~~~~~~~~~~------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------~~- 300 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDK------------YQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------SI- 300 (337)
T ss_dssp ETTSCEEEEETTSSCE------------EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EE-
T ss_pred cCCCcEEEEECCCCCe------------EE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe--------EE-
Confidence 9999999999864321 11 12367889999999876 68888899999999775421 11
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
....|...|++++|+|+++ +|++++.||.|++|++.
T Consensus 301 -~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 301 -FQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -EEEECSSCEEEEEECTTSC-EEEEEETTSCEEEEEEE
T ss_pred -EEecCCCcEEEEEECCCCC-EEEEecCCCeEEEEEEe
Confidence 1234778899999999876 57899999999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=232.88 Aligned_cols=238 Identities=22% Similarity=0.356 Sum_probs=197.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++| |++++|++|+.||.|++||..++. ....+..|...|.+++|+|++++|++++.|+.+++|++.....
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW--LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE--EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE--EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 8899999999 999999999999999999986654 4566778999999999999999999999999999999976654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 160 (281)
......+.+|...|.++.| +++.+++++.|+.|++|+.. .....+ ..|...+.++.|+| ++..+++
T Consensus 94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-------~~~~~~----~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-------SLVYNL----QAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-------EEEEEE----ECCSSCEEEEEEEETTTTEEEE
T ss_pred CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-------cEEEec----ccCCCceeEEEEccCCCCEEEE
Confidence 4556677899999999999 56799999999999999711 122222 36788999999998 8899999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
++.|+.+++||.. .....+...+...+.++.+++++.+++++.|+.+++|+.... ...
T Consensus 161 ~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~---------~~~ 218 (313)
T 3odt_A 161 ASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG---------DVL 218 (313)
T ss_dssp EETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC---------CEE
T ss_pred EECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch---------hhh
Confidence 9999999999843 222333334778899999999988999999999999977542 123
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....|..+|++++|+|++ . +++++.||.|++||+..
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTT
T ss_pred hhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCC
Confidence 3445789999999999987 3 67999999999999865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=236.01 Aligned_cols=260 Identities=19% Similarity=0.313 Sum_probs=199.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|++||..+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 88999999999999999999999999999987664 4678889999999999999999999999999999999976653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecC-----CeEEEEeCCCCCCCCceeeee--eeeccCCccc--cEEEEEEc
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQT--ISESNNGHSS--TIWALSFN 152 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-----~~v~~w~~~~~~~~~~~~~~~--~~~~~~~h~~--~v~~~~~~ 152 (281)
...+. +...+.+++|+|++.++++++.+ +.|++|++............. .......|.. .+.+++|+
T Consensus 109 ---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 109 ---VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp ---EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred ---EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 33344 77789999999999999999999 999999986543211100000 0001123444 89999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
|++.+|++++.||.|++||+.... .....+ ..|...+.++.|++++ ++++++.|+.+++|+.......
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNNY----------EYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTTT----------EEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCc----------EeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 999999999999999999986411 112222 2367889999999876 5788889999999987542211
Q ss_pred CC-------------cc---------------------------------ceeeeeeccCCCCCeeEEEEcCCCCeeEEE
Q 023500 232 DG-------------PS---------------------------------YKMLLKKEKAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 232 ~~-------------~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s 265 (281)
.. +. ..........|...|++++|+|+++ +|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 332 (369)
T 3zwl_B 254 KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT-SYAS 332 (369)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred eeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC-EEEE
Confidence 00 00 0001122356889999999999875 6889
Q ss_pred eCCCCeEEEEEccc
Q 023500 266 ASDDGMIKIWELAN 279 (281)
Q Consensus 266 ~~~Dg~v~iw~~~~ 279 (281)
++.||.|+||++..
T Consensus 333 ~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 333 GGEDGFIRLHHFEK 346 (369)
T ss_dssp EETTSEEEEEEECH
T ss_pred EcCCCeEEEEECcc
Confidence 99999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=232.87 Aligned_cols=243 Identities=21% Similarity=0.337 Sum_probs=196.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce-eeeeeec--CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATLE--GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|...|++++|+|++++|++++ |+.|++|+..++.. .....+. +|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 788999999999999999999 99999999865432 2233333 7999999999999999999999999999999976
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
... .....+..|...+.+++|+|+++++++++.|+.|++|+++... .+..+ .+|...+.+++|+|++.+|
T Consensus 129 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 129 PTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVRQF----QGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp C---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEE----CCCSSCEEEEEECTTSSEE
T ss_pred CCc-ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----eeeee----ecccCceEEEEECCCCCEE
Confidence 542 3455677899999999999999999999999999999886532 22222 3688899999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++++.|+.|++||++..+. .... .+...+.++.|++++ .+++++.++.+++|+.....
T Consensus 199 ~~~~~dg~i~~~d~~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------- 257 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGRQ-----------LQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------- 257 (337)
T ss_dssp EEEETTSEEEEEETTTTEE-----------EEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--------
T ss_pred EEEecCCcEEEEECCCCce-----------Eeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--------
Confidence 9999999999999864321 1122 256778999999876 67788889999999775421
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......|..+|++++|+|+++ ++++++.||.|++|++..
T Consensus 258 --~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 258 --KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp --EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred --eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCC
Confidence 123457889999999999876 578999999999999865
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=230.86 Aligned_cols=244 Identities=23% Similarity=0.373 Sum_probs=183.5
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE--
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE-- 83 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~-- 83 (281)
.++++|++++ +||+|. |++|+|||..+++......+.+|...|++++|+|++++|++|+.|++|++|++..++...
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999886 777764 999999999888755455566888999999999999999999999999999987543211
Q ss_pred ------------------------------------EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC
Q 023500 84 ------------------------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 127 (281)
Q Consensus 84 ------------------------------------~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~ 127 (281)
.+..+.+|...+..+.+++++.++++++.|++|++|++......
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 12234578888999999999999999999999999998754321
Q ss_pred CceeeeeeeeccCCccccEEEEEEccCCCE---EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE
Q 023500 128 NWHCVQTISESNNGHSSTIWALSFNAKGDK---LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204 (281)
Q Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 204 (281)
. ........|...|.++.++|.+.. +++++.+++|++|+...... ... ..+...+..+.
T Consensus 186 ~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~~~--~~~~~~v~~~~ 247 (318)
T 4ggc_A 186 W-----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------LSA--VDAHSQVCSIL 247 (318)
T ss_dssp S-----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------EEE--EECSSCEEEEE
T ss_pred c-----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------ccc--ccceeeeeeee
Confidence 1 111122356788999999987653 34677899999998764321 111 12456677777
Q ss_pred eCCCc-ee--eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 205 WSREG-II--ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 205 ~~~~~-~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+.+ .+ ++++.|+.+++|+.... ..+....+|..+|++++|+|+++ +|+||+.||+|+|||+..
T Consensus 248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE 315 (318)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred ecccccceEEEEEcCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence 77654 22 34558999999977542 22344568999999999999876 688999999999999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=238.21 Aligned_cols=203 Identities=16% Similarity=0.130 Sum_probs=149.8
Q ss_pred CCeeEEEEcCCCCEEE--EecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCC
Q 023500 48 NEVKSVSWNASGTLLA--TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~--s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~ 125 (281)
..+.+++|+|||++++ +++.|++|++||+.... ++..+ .|...|.+++|+|+++++++++.++ +.+|+.....
T Consensus 134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---EKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE---EEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc---EEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence 3467899999999875 55689999999987654 33444 3677899999999999999998655 5555544332
Q ss_pred CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC----cEEEEeCCccccccCCCCcccceeEEeecccCcceE
Q 023500 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 201 (281)
... .....+|...|.+++|+|++..+++++.|+ .++.|+....... ......+ ..|...|.
T Consensus 209 -----~~~--~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------~~~~~~~-~~~~~~V~ 273 (365)
T 4h5i_A 209 -----CIA--RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-------VLRSKQV-TNRFKGIT 273 (365)
T ss_dssp -----EEE--EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-------EEEEEEE-ESSCSCEE
T ss_pred -----cee--eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-------ceeeeee-cCCCCCeE
Confidence 111 112346888999999999999999998887 5777876432211 0111122 24678899
Q ss_pred EEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 202 SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 202 ~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++|+|++ ++++|+.|+.+++|+.... +.+.....+|..+|++++|+|+++ +|+|||.|++||||++..
T Consensus 274 ~~~~Spdg~~lasgs~D~~V~iwd~~~~--------~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 274 SMDVDMKGELAVLASNDNSIALVKLKDL--------SMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTT--------EEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred eEEECCCCCceEEEcCCCEEEEEECCCC--------cEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence 99999987 6788999999999977532 222333578999999999999986 688999999999999853
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=240.20 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=191.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++||+|+.|+.|+|||..+++ ++..+.+|...+.+++++ +..|++|+.|+.+++||......
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce
Confidence 56789999999999999999999999999988764 577889999999988774 68999999999999999865442
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
.+..+.+|...+..+.|+|++.++++++.|+.+++|+......... .......|...|.+++|+|.+. .+++
T Consensus 222 --~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----~~~~~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 222 --HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----PLQTFTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----CSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred --eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----eeeeecccCCceeeeeeCCCcccEEEE
Confidence 4567789999999999999999999999999999998875432111 1112236788999999999764 5544
Q ss_pred --eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eee--ecCCCCcEEEEecccCCCcCCcc
Q 023500 161 --CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIA--SGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 161 --~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~--~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
|+.|++|++||+..+.. ...+ .....+.++.|++++ .++ +|..|+.+++|+....
T Consensus 295 ~~gs~D~~I~iwd~~t~~~-----------~~~~--~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~------- 354 (420)
T 4gga_A 295 GGGTSDRHIRIWNVCSGAC-----------LSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------- 354 (420)
T ss_dssp EECTTTCEEEEEETTTTEE-----------EEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-------
T ss_pred EeecCCCEEEEEeCCcccc-----------ceee--ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-------
Confidence 56899999999864422 1122 234567777777754 333 3457999999976532
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+....+|...|++++|+|++. +|+||+.|++|+|||+..
T Consensus 355 --~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 355 --AKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFE 395 (420)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSC
T ss_pred --cEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Confidence 22345568999999999999886 578999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=251.70 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=190.3
Q ss_pred CccceeEEEEcCC------CCEEEEeeCCCcEEEEecCCCce---------eeeeeecCCCCCeeEEEEcCCCCEEEEec
Q 023500 2 HTRTVRSCAWSPS------GKLLATASFDATTCIWEDVGGDY---------ECVATLEGHENEVKSVSWNASGTLLATCG 66 (281)
Q Consensus 2 h~~~i~~~~~~~~------~~~l~tg~~d~~i~lw~~~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 66 (281)
|...|+.++|+|+ +.+||+|+.|++|+|||...+.. .+...+.+|...|.+++|+|+ ..|++|+
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs 284 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGF 284 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEE
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEe
Confidence 4578999999997 57999999999999999865431 123467889999999999986 4899999
Q ss_pred CCCcEEEEEecCCCeeEEeEeecCCccceeEE--EecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV--QWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v--~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
.|++|++||+..+.. +...+.+|...|+++ .|+|++ ++|+|+|.|++|++||+.... +...+. +|.
T Consensus 285 ~DgtV~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-----~~~~~~----~~~ 353 (524)
T 2j04_B 285 KNGFVAEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-----TTKTTV----SRF 353 (524)
T ss_dssp TTSEEEEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-----HHCEEE----EEC
T ss_pred CCCEEEEEECCCCCC--ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-----cccccc----ccc
Confidence 999999999975532 234577899999999 578887 899999999999999875431 222221 232
Q ss_pred --ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcE
Q 023500 144 --STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220 (281)
Q Consensus 144 --~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~ 220 (281)
..|.+++|+|++..+++++.|++|++||++.... ...+. .|...|.+++|+|++ .+++|+.|+.+
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-----------~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-----------VHPLV-SRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-----------CEEEE-ECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-----------ceeee-cCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 2478899999999999999999999999864321 12233 378899999999987 68899999999
Q ss_pred EEEecccCCCcC------------------Cccc-----------------eeeeeeccCCCCCeeEEEEcCCCC--eeE
Q 023500 221 QFFVESKDDLID------------------GPSY-----------------KMLLKKEKAHDMDVNSVQWSPGER--RLL 263 (281)
Q Consensus 221 ~~~~~~~~~~~~------------------~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~--~~~ 263 (281)
++|+........ .+.. ........+|..+|++++|+|++. .++
T Consensus 422 ~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l 501 (524)
T 2j04_B 422 IITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCY 501 (524)
T ss_dssp ECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEE
T ss_pred EEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHH
Confidence 999754321110 0000 111223456889999999999863 478
Q ss_pred EEeCCCCeEEEEEcccC
Q 023500 264 ASASDDGMIKIWELANT 280 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~~~ 280 (281)
|+|+.||.||||++..+
T Consensus 502 Asg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 502 AFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEECTTSEEEEEECSCC
T ss_pred HhhccCceEEEEEcccc
Confidence 99999999999998753
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=244.75 Aligned_cols=255 Identities=16% Similarity=0.310 Sum_probs=188.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---------eeeeeeecCCC------------CCeeEEEEcCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---------YECVATLEGHE------------NEVKSVSWNASG- 59 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---------~~~~~~~~~h~------------~~v~~v~~~~~~- 59 (281)
|.+.|++++|+|+|++||+|+.||.|+||+..+.. +.+...+.+|. +.|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45789999999999999999999999999976543 23567888998 889999999998
Q ss_pred -CEEEEecCCCcEEEEEecCCCee------------------------------------EEeEe-ecCCccceeEEEec
Q 023500 60 -TLLATCGRDKSVWIWEVMPGNEF------------------------------------ECVSV-LQGHAQDVKMVQWH 101 (281)
Q Consensus 60 -~~l~s~~~d~~v~~w~~~~~~~~------------------------------------~~~~~-~~~~~~~v~~v~~~ 101 (281)
.+|++++.|++|++|++...... .+... ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998643210 01112 36799999999999
Q ss_pred CCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee---eeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCcccc
Q 023500 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI---SESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 102 p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~ 177 (281)
|++++++++ .|++|++|+++... +....+ .....+|...|.+++|+|++ .+|++|+.|+.|++||++....
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred CCCCEEEEe-CCCeEEEEECCCCC----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999999998 79999999887421 111111 01234688999999999998 8999999999999999875432
Q ss_pred ccCCCCcccceeEEeec-----------ccCcceEEEEeCCCce-eeecCCCCcEEEEeccc-CCCcCCccceeeeeecc
Q 023500 178 QSGDGYASWRHLCTISG-----------YHDRTIFSVHWSREGI-IASGAADDSVQFFVESK-DDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 244 (281)
.. .....+.. .|...+.+++|++++. +++++. +.+++|+... ... .....
T Consensus 262 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~---------~~~~~ 324 (447)
T 3dw8_B 262 CD-------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP---------VETYQ 324 (447)
T ss_dssp SC-------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC---------SCCEE
T ss_pred cc-------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc---------cceee
Confidence 10 00111111 1223899999999874 555556 9999998764 211 11122
Q ss_pred CCCC---------------CeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDM---------------DVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~---------------~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.|.. .+..++|+|+++ +|++++.||.|+|||+..
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTT
T ss_pred ccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCC
Confidence 3322 133499999886 568999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=236.16 Aligned_cols=259 Identities=15% Similarity=0.261 Sum_probs=197.2
Q ss_pred CccceeEEEEcCC---CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEE------cCCCCEEEEecCCCcEE
Q 023500 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW------NASGTLLATCGRDKSVW 72 (281)
Q Consensus 2 h~~~i~~~~~~~~---~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~------~~~~~~l~s~~~d~~v~ 72 (281)
|...|++++|+|+ +++|++|+.|+.|++||..++. .++..+.+|...|.++.| +|++++|++++.|+.|+
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 6789999999998 6999999999999999987664 246778899999999954 68899999999999999
Q ss_pred EEEecCCCeeEEeEeecCCc----cceeEEE----ecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 73 IWEVMPGNEFECVSVLQGHA----QDVKMVQ----WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~----~~v~~v~----~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
+||+..... ....+..|. ..+.++. |+|++.++++++.|+.|++|++.... .... ..|..
T Consensus 143 vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~-----~~~~~ 210 (357)
T 3i2n_A 143 VWDPRQKDD--PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----LRWE-----TNIKN 210 (357)
T ss_dssp EECTTSCSS--CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----EEEE-----EECSS
T ss_pred EEeCCCCCC--cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----eeee-----cCCCC
Confidence 999976642 233344333 3788888 78999999999999999999887642 1111 24678
Q ss_pred cEEEEEEcc---CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCc
Q 023500 145 TIWALSFNA---KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDS 219 (281)
Q Consensus 145 ~v~~~~~~~---~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~ 219 (281)
.|.+++|+| ++.+|++++.|+.|++||........ .........|...+.++.|+|++ ++++++.|+.
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK-------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT-------EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc-------ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence 899999999 89999999999999999986433210 00001112478899999999976 5889999999
Q ss_pred EEEEecccCCCcC-----C-----ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 220 VQFFVESKDDLID-----G-----PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 220 ~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+++|+........ + ......+.....|..+|++++|+|+++.++++++.||.|+||++.+.
T Consensus 284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999876432210 0 00112344566899999999999998765548999999999998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=259.65 Aligned_cols=244 Identities=20% Similarity=0.319 Sum_probs=202.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++||+|+.||.|+|||..++. .+..+.+|...|.+++|+|++++|++++.|+.|++|++..+.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~- 88 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE- 88 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-
Confidence 78899999999999999999999999999987764 467788999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s 160 (281)
.+..+.+|...|++++|+|++..+++++.|++|++|+++... .....+ .+|...|.+++|+| ++..|++
T Consensus 89 --~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~----~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 89 --KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTF----EGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp --EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----EEEEEE----ECCSSCEEEEEEETTEEEEEEE
T ss_pred --EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----eEEEEE----cCCCCcEEEEEEEcCCCCEEEE
Confidence 356678899999999999999999999999999999886531 122222 36888999999999 7889999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--Cc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++.||.|++||...... .......+...+.++.|++ ++ .+++++.|+.+++|+....
T Consensus 159 ~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------- 218 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (814)
T ss_dssp EETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---------
T ss_pred EeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------
Confidence 99999999999753321 1222333457788888887 54 7889999999999976532
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
........|...|++++|+|+++ ++++++.||.|++||+..
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT
T ss_pred cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence 12334457889999999999876 678999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=235.77 Aligned_cols=254 Identities=19% Similarity=0.325 Sum_probs=193.2
Q ss_pred CccceeEEEEcCCCC-EEEEeeC---CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC---CCEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSPSGK-LLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~---d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~~w 74 (281)
|...|++++|+|+++ ++++|+. |+.|+||+..+++...... .+|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 788999999999996 5567766 9999999998776543333 368999999999998 6999999999999999
Q ss_pred EecCCCeeEEeEeecCCccceeEEE------ecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQ------WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~------~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
|+..... ....+.+|...|.++. |+|+++++++++.|+.|++|++..... .+..+......+...+.+
T Consensus 96 d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 96 NLEAPEM--PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----PVANMEPVQGENKRDCWT 169 (357)
T ss_dssp CTTSCSS--CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----CSEEECCCTTSCCCCEEE
T ss_pred eCCCCCc--cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----cceeccccCCCCCCceEE
Confidence 9976541 3566789999999995 568899999999999999998876431 122222111112347888
Q ss_pred EE----EccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC---C-ceeeecCCCCcE
Q 023500 149 LS----FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR---E-GIIASGAADDSV 220 (281)
Q Consensus 149 ~~----~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~~~~~~d~~~ 220 (281)
+. |+|++.+|++++.|+.|++||++.... .....+...+.++.|+| + ..+++++.|+.+
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCce-------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 88 688999999999999999999864321 11123678899999997 4 578889999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+........ .........|...|++++|+|+++.++++++.||.|++||+..
T Consensus 237 ~i~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 237 HVFDMRTQHPTK----GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEEEETTT----EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred EEEeCcCCCccc----ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 999876432211 1111133478999999999998765789999999999999874
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=245.89 Aligned_cols=255 Identities=18% Similarity=0.338 Sum_probs=196.4
Q ss_pred cceeEEEEcCCCC-EEEEe----------eCCCcEEEEecCCCcee-eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcE
Q 023500 4 RTVRSCAWSPSGK-LLATA----------SFDATTCIWEDVGGDYE-CVATLEGHENEVKSVSWNASGTLLATCGRDKSV 71 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg----------~~d~~i~lw~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v 71 (281)
..|.+++|+|+|+ +||+| +.|+.|+||+..++... ++..+ .|...|.+++|+|++.+|++++.|+.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 5688999999997 99999 89999999998765422 23333 588999999999999999999999999
Q ss_pred EEEEecCCCe-eEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCce-eeeeeeeccCCccccEEE
Q 023500 72 WIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWH-CVQTISESNNGHSSTIWA 148 (281)
Q Consensus 72 ~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~ 148 (281)
++|++..... ......+.+|...|.+++|+|+ +.++++++.|+.|++|++......... ....+ ....+|...|.+
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~ 170 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVIS 170 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc-ccccCCCCCeeE
Confidence 9999976211 1256778899999999999998 889999999999999998765311000 01111 122468889999
Q ss_pred EEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-----cCcceEEEEeCCCc--eeeecCCCC--
Q 023500 149 LSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-----HDRTIFSVHWSREG--IIASGAADD-- 218 (281)
Q Consensus 149 ~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~--~~~~~~~d~-- 218 (281)
++|+|+ +.+|++++.|+.|++||++..+. ...+... |...+.++.|+|++ ++++++.|+
T Consensus 171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~ 239 (416)
T 2pm9_A 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKE-----------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND 239 (416)
T ss_dssp EEECSSCTTEEEEESSSSCEEEEETTTTEE-----------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS
T ss_pred EEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC
Confidence 999999 78999999999999999864322 1111111 26789999999975 788888898
Q ss_pred -cEEEEecccCCCcCCccceeeeeecc-CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 219 -SVQFFVESKDDLIDGPSYKMLLKKEK-AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+++|+..... ....... .|...|++++|+|.+..+|++++.||.|++||+..
T Consensus 240 ~~i~~~d~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 240 PSILIWDLRNAN--------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CCCCEEETTSTT--------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred ceEEEEeCCCCC--------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 99999876421 1122234 68899999999993345788999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=237.48 Aligned_cols=252 Identities=21% Similarity=0.330 Sum_probs=193.9
Q ss_pred CccceeEEEEcCCCC-EEEEeeCCCcEEEEec----CCCce----eeeeeecC----------CCCCeeEEEEcCCCCEE
Q 023500 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWED----VGGDY----ECVATLEG----------HENEVKSVSWNASGTLL 62 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~----~~~~~----~~~~~~~~----------h~~~v~~v~~~~~~~~l 62 (281)
|.+.|++++|+|+|+ +||+|+.|+.|++|+. .++.. .....+.. |.+.|.+++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 568999999999999 9999999999999998 66541 01222222 67899999999999999
Q ss_pred EEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc-----ee------
Q 023500 63 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-----HC------ 131 (281)
Q Consensus 63 ~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~-----~~------ 131 (281)
++++.|+.|++|+. .+. ....+.+|...|.+++|+|+++++++++.|+.|++|++........ ..
T Consensus 124 ~~~~~dg~i~i~~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELRLWNK-TGA---LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEEEEET-TSC---EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEeCCCeEEEEeC-CCC---eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 99999999999993 332 4566788999999999999999999999999999999865321000 00
Q ss_pred ---------ee---------------------------eeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcc
Q 023500 132 ---------VQ---------------------------TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175 (281)
Q Consensus 132 ---------~~---------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~ 175 (281)
+. .......+|...|.+++|+|++++|++++.|+.|++||....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 00 000112367889999999999999999999999999987643
Q ss_pred ccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEE
Q 023500 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW 255 (281)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 255 (281)
.. ...+ ..|...+.++.|++++.+++++.|+.+++|+.... ........|..+|++++|
T Consensus 280 ~~-----------~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 280 NS-----------QNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp SC-----------SEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEE
T ss_pred cc-----------ceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEE
Confidence 21 1122 23678899999999989999999999999977542 223344578889999999
Q ss_pred cCCCCeeEEEeCCCCeEEEEEccc
Q 023500 256 SPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 256 ~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|++. +|++++.||.|++|++..
T Consensus 339 s~~~~-~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 339 SQDGQ-KYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp CTTSS-EEEEEETTSCEEEEECHH
T ss_pred cCCCC-EEEEEECCCeEEEEECCC
Confidence 99875 678999999999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=234.71 Aligned_cols=242 Identities=24% Similarity=0.361 Sum_probs=193.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.||.|++||..+++ .+..+.+|...|.+++| +++.|++|+.|+.|++||+.....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT--KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe--EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc
Confidence 67889999999999999999999999999987764 46778899999999999 457999999999999999974432
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 160 (281)
....+.+|...|.+++|+|++.++++++.|+.|++|++.... ....+ .+|...|.+++|+|++. ++++
T Consensus 209 --~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~----~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 209 --QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTK----TNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp --EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEE----CCCSSCCCEEEECTTSTTEEEE
T ss_pred --eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEe----cCCcceEEEEEECCCCCCEEEE
Confidence 356678899999999999999999999999999999887532 22222 36888999999999764 6666
Q ss_pred ee--CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eee--cCCCCcEEEEecccCCCcCCcc
Q 023500 161 CS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IAS--GAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 161 ~~--~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
++ .|+.|++||+..... ...+ .+...+.++.|++++. +++ |..|+.+++|+.....
T Consensus 278 ~~gs~d~~i~i~d~~~~~~-----------~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~------ 338 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGAR-----------VNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG------ 338 (401)
T ss_dssp ECCTTTCEEEEEETTTCCE-----------EEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE------
T ss_pred ecCCCCCEEEEEECCCCCE-----------EEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc------
Confidence 54 799999999864321 2222 2457799999998763 444 5589999999775421
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
........+|...|++++|+|+++ +|++++.||.|++|++..
T Consensus 339 -~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 339 -LTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -EEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC
T ss_pred -ceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCC
Confidence 111223457899999999999876 678999999999999865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=253.53 Aligned_cols=233 Identities=11% Similarity=0.097 Sum_probs=170.2
Q ss_pred EEEEeeCCCcEEEEecCCCceee--eeeecCCCCCeeEEEEcCC------CCEEEEecCCCcEEEEEecCCCee------
Q 023500 17 LLATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNAS------GTLLATCGRDKSVWIWEVMPGNEF------ 82 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~~~~--~~~~~~h~~~v~~v~~~~~------~~~l~s~~~d~~v~~w~~~~~~~~------ 82 (281)
+||+++.|+.|+||+..+++... ...+.+|.+.|++++|+|+ +.+|++++.|++|++||+..+...
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 34456688999999986654321 2446678899999999996 579999999999999999754311
Q ss_pred --EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEE--EEccCC-CE
Q 023500 83 --ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL--SFNAKG-DK 157 (281)
Q Consensus 83 --~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~ 157 (281)
.+...+.+|...|++++|+|+ ..|++|+.|++|++||++.... .... ..+|...|.++ .|+|++ .+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~----~~~~----~~~H~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV----PSFY----DQVHDSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS----CSEE----EECSSSCEEEEEEECCTTSCCE
T ss_pred ecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC----ceEE----eecccccEEEEEEEcCCCCCeE
Confidence 123467789999999999986 4899999999999999875421 1111 23789999999 567887 89
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc-cCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
|++|+.|++|++||++..+.. ..+.+. ....+.+++|+|++ .+++++.|+.+++|+.+... .
T Consensus 326 laS~S~D~tvklWD~~~~~~~-----------~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-----~ 389 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATT-----------KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-----A 389 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHH-----------CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----C
T ss_pred EEEeccCCeEEEEECCCCCcc-----------cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----c
Confidence 999999999999998643221 111111 11246788999965 68888899999999775421 1
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.....+|...|++++|+|+++ +|++|+.||+|+||++..
T Consensus 390 ----~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 390 ----VHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ----CEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCS
T ss_pred ----ceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechH
Confidence 122346999999999999886 578999999999999754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=234.96 Aligned_cols=243 Identities=15% Similarity=0.154 Sum_probs=189.1
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
+....|+|++++||+|+.|+.|++||..++. +...+.+|.+.|.+++|+|++++|++|+.|++|++||+..+.. +
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~ 174 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---P 174 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTTSCE--EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC---C
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCCCcc--eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---c
Confidence 4445789999999999999999999987654 4566789999999999999999999999999999999976643 4
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc---------------------c
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS---------------------S 144 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~---------------------~ 144 (281)
..+.+|...|.+++|+|++.++++++.|++|++|++.... .+..+.. ...|. .
T Consensus 175 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-----TIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-----eeEEeec-CCCCCCCccEEEEecCCcceeeecccC
Confidence 5678899999999999999999999999999999987542 2222221 11233 3
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEE
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQF 222 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~ 222 (281)
.+.+++|+|++++|++|+.||.|++||+.... ........|...+.+++|+|++ ++++++.|+.+++
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 44455567889999999999999999986432 2223333467889999999976 6999999999999
Q ss_pred EecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 223 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+...... . .......|...|+++.+. ++ .+|++++.|+.|++|++..
T Consensus 318 wd~~~~~~----~---~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 318 WDLRSPEC----P---VGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EETTCTTS----C---SEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECC
T ss_pred EEcCCCcC----c---hhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccC
Confidence 98764311 0 111123467788888765 44 4788999999999999865
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=241.20 Aligned_cols=257 Identities=14% Similarity=0.177 Sum_probs=186.4
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCC---Cc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVG---GD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~---~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+.|++++|+| ++++||+|+.|+.|+|||..+ +. ..+...+ +|...|.+++|+|++.+|++|+.|++|++||+
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEe
Confidence 789999999999 999999999999999999754 32 2223333 49999999999999999999999999999999
Q ss_pred c---CCCeeE-----EeEeec--C--CccceeEEE--ecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 77 M---PGNEFE-----CVSVLQ--G--HAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 77 ~---~~~~~~-----~~~~~~--~--~~~~v~~v~--~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
. .+.... .+..+. . +...+.++. ++|++.++++++.|+.|++|++.... ++..+.. ..|
T Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~--~~h 213 (437)
T 3gre_A 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-----RLQIIEN--SPR 213 (437)
T ss_dssp EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-----EEEEEEC--CGG
T ss_pred ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-----eeEEEcc--CCC
Confidence 4 332211 111111 1 445566666 56789999999999999999987642 3333321 127
Q ss_pred cccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC----CCc-eeeecCCC
Q 023500 143 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS----REG-IIASGAAD 217 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~-~~~~~~~d 217 (281)
...|.+++|+|++.+|++|+.||.|++||++... ....+...+..+|.++.++ +++ ++++++.|
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d 282 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-----------LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----------EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-----------EEEEEecCCCCceEEEEeccccCCCccEEEEEcCC
Confidence 8899999999999999999999999999986432 2222222356688899555 445 78899999
Q ss_pred CcEEEEecccCCCcCCc------cceeeee---------ecc--CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGP------SYKMLLK---------KEK--AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~------~~~~~~~---------~~~--~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+++|+.......... .....+. ... .|...|++++|+ ++ .+|++|+.|+.|++||+..
T Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTC
T ss_pred CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCC
Confidence 99999987643211000 0000000 011 277889999999 45 5788999999999999865
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=231.54 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=192.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEe-cC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEV-MP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~-~~ 78 (281)
|.+.|++++|+|++++|++|+.|+.|+||+..++. ......+.+|...|.+++|+|+++ +|++|+.|+.|++|++ ..
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence 78999999999999999999999999999987654 222445568999999999999999 9999999999999999 65
Q ss_pred CCeeEEeEeecC--CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC----ceeeeeeeeccCCccccEEEEEEc
Q 023500 79 GNEFECVSVLQG--HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN----WHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 79 ~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
.. ...+.+ |...|.+++|+| +..+++++.|+.|++|++....... .+++..+ .|...|.+++|+
T Consensus 90 ~~----~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 159 (342)
T 1yfq_A 90 PS----FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-----KVKNKIFTMDTN 159 (342)
T ss_dssp SS----EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-----SSCCCEEEEEEC
T ss_pred Cc----eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-----eeCCceEEEEec
Confidence 54 255677 999999999999 9999999999999999875411000 1111111 277889999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCc-cccccCCCCcccceeEEeecccCcceEEEEeCC-Cc-eeeecCCCCcEEEEecccCC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~ 229 (281)
|++ +++++.|+.|++||++. ... ........+...+.++.|++ ++ .+++++.|+.+++|+.....
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDD----------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTC----------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred CCc--EEEEeCCCeEEEEECCccccc----------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 886 99999999999999864 211 01112224677899999998 54 78888999999999875431
Q ss_pred Cc-CCccceeeeee-----ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 230 LI-DGPSYKMLLKK-----EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 230 ~~-~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.. .......+... ...|...|++++|+|+++ +|++++.||.|++||+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTT
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCcc
Confidence 00 00111111110 012455999999999875 578999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-33 Score=231.33 Aligned_cols=264 Identities=16% Similarity=0.239 Sum_probs=195.6
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeee-----------cCCCCCeeEEEEcC-CCCEEEEecCC
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATL-----------EGHENEVKSVSWNA-SGTLLATCGRD 68 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~-----------~~h~~~v~~v~~~~-~~~~l~s~~~d 68 (281)
|.+.|++++|+| ++++||+|+.||.|++||..++........ .+|...|.+++|+| ++.+|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 889999999999 999999999999999999876543221111 35999999999999 78899999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC---CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
+.|++||+..... ...+. +...+.++.|+|.+ .++++++.|+.|++|++.... .+..+ .+|...
T Consensus 122 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-----~~~~~----~~~~~~ 188 (408)
T 4a11_B 122 KTLKVWDTNTLQT---ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-----CSHIL----QGHRQE 188 (408)
T ss_dssp SEEEEEETTTTEE---EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-----CCEEE----CCCCSC
T ss_pred CeEEEeeCCCCcc---ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-----eeeee----cCCCCc
Confidence 9999999976543 23332 56678999999854 489999999999999987542 12222 368899
Q ss_pred EEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccC--CC--CcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCc
Q 023500 146 IWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSG--DG--YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219 (281)
Q Consensus 146 v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~ 219 (281)
|.+++|+|++. .|++++.||.|++||++....... .. .............|...+.+++|++++ ++++++.|+.
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 99999999998 589999999999999864321000 00 000000000112367889999999987 6888999999
Q ss_pred EEEEecccCCCcCCc--------------------------------------cceeeeeeccCCCCCeeEEEEcCCCCe
Q 023500 220 VQFFVESKDDLIDGP--------------------------------------SYKMLLKKEKAHDMDVNSVQWSPGERR 261 (281)
Q Consensus 220 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~ 261 (281)
+++|+.......... ..........+|...|++++|+|+++
T Consensus 269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~- 347 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ- 347 (408)
T ss_dssp EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-
T ss_pred EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-
Confidence 999987653221000 00112334467999999999999875
Q ss_pred eEEEeCCCCeEEEEEccc
Q 023500 262 LLASASDDGMIKIWELAN 279 (281)
Q Consensus 262 ~~~s~~~Dg~v~iw~~~~ 279 (281)
+|++++.||.|++|++..
T Consensus 348 ~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEEETTSCEEEEEECC
T ss_pred EEEEECCCCeEEEEeCCC
Confidence 678999999999999875
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=234.64 Aligned_cols=254 Identities=17% Similarity=0.220 Sum_probs=194.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc----eeeeeeecCCCCCeeEEEEcCC----C---CEEEEecCCCc
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD----YECVATLEGHENEVKSVSWNAS----G---TLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~----~~~~~~~~~h~~~v~~v~~~~~----~---~~l~s~~~d~~ 70 (281)
|.+.|++++|+| ++|++|+.|+.|++|+..+.+ ..++..+.+|...|.+++|+|+ + .+|++++.|+.
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 889999999999 899999999999999987765 3356777899999999999999 9 99999999999
Q ss_pred EEEEEecCCCe--eEEeEeecCC-----ccceeEEEec----CCCCe-EEEEecCCeEEEEeCCC------CCCCCceee
Q 023500 71 VWIWEVMPGNE--FECVSVLQGH-----AQDVKMVQWH----PTMDV-LFSCSYDNTIKVWWAED------TDSDNWHCV 132 (281)
Q Consensus 71 v~~w~~~~~~~--~~~~~~~~~~-----~~~v~~v~~~----p~~~~-l~s~s~d~~v~~w~~~~------~~~~~~~~~ 132 (281)
|++|++..... ......+..| ...|.+++|+ |++.. +++++.|+.|++|++.. .....+...
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 172 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT 172 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc
Confidence 99999976542 1114556677 5889999999 99999 99999999999999876 221111110
Q ss_pred eeee---eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec--cc---CcceEEEE
Q 023500 133 QTIS---ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YH---DRTIFSVH 204 (281)
Q Consensus 133 ~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~v~~~~ 204 (281)
..+. .....|...|.+++|+|++ .|++++.|+.|++||+...+ ....+.. .| ...+.++.
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----------PLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----------EEEEEECCC---CCCCCEEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----------eeEEEeccccccccCCccceEE
Confidence 0221 0113477889999999999 99999999999999986432 2222221 15 77899999
Q ss_pred eCCCc-eeeecCCC---CcEEEEecccCCCcCCccceeeeeeccC-------------CCCCeeEEEEcCCCCeeEEEeC
Q 023500 205 WSREG-IIASGAAD---DSVQFFVESKDDLIDGPSYKMLLKKEKA-------------HDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 205 ~~~~~-~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
|++++ ++++++.| +.+++|+..... ....... |...|++++|+|++. +|++++
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 310 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGE---------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAG 310 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCC---------EEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCc---------ccceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEe
Confidence 99876 67788888 999999775421 1222233 889999999999876 678999
Q ss_pred CCCeEEEEEccc
Q 023500 268 DDGMIKIWELAN 279 (281)
Q Consensus 268 ~Dg~v~iw~~~~ 279 (281)
.||.|+|||+..
T Consensus 311 ~dg~i~iwd~~~ 322 (397)
T 1sq9_A 311 WDGKLRFWDVKT 322 (397)
T ss_dssp TTSEEEEEETTT
T ss_pred CCCeEEEEEcCC
Confidence 999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=225.44 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=169.7
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEE
Q 023500 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKV 118 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~ 118 (281)
..+.+|.+.|++++|+|+|++|++|+.|++|++|++.... ...+..+.+|...|.+++|+|. +++|++++.|++|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3567899999999999999999999999999999986432 2346778999999999999864 789999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
|+++... ...+.. ..+|...|.+++|+|+ +.+|++++.|+.|++||++..... . ... ...|
T Consensus 82 Wd~~~~~---~~~~~~----~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~--------~-~~~-~~~h 144 (297)
T 2pm7_B 82 WKEENGR---WSQIAV----HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT--------S-PII-IDAH 144 (297)
T ss_dssp EEBSSSC---BCCCEE----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------C-CEE-EECC
T ss_pred EEcCCCc---eEEEEE----eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------e-eee-eecc
Confidence 9987532 111111 2368899999999997 789999999999999998632110 0 111 2247
Q ss_pred CcceEEEEeCCC--------------ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC--C
Q 023500 197 DRTIFSVHWSRE--------------GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE--R 260 (281)
Q Consensus 197 ~~~v~~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~ 260 (281)
...+.+++|+|+ .++++++.|+.+++|+..... ..........+|...|++++|+|++ .
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----ceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 788999999985 379999999999999875421 1111233456899999999999985 4
Q ss_pred eeEEEeCCCCeEEEEEccc
Q 023500 261 RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 261 ~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+|++++.|+.|+|||+..
T Consensus 220 ~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 220 SYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEEEETTSCEEEEEESS
T ss_pred eEEEEEECCCcEEEEEeCC
Confidence 6789999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=232.50 Aligned_cols=251 Identities=22% Similarity=0.367 Sum_probs=195.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++|++|+.|+.|++|+.. + ..+..+.+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 56799999999999999999999999999933 3 34667889999999999999999999999999999999865432
Q ss_pred eE-----------------------------------------------------EeEeecCCccceeEEEecCCCCeEE
Q 023500 82 FE-----------------------------------------------------CVSVLQGHAQDVKMVQWHPTMDVLF 108 (281)
Q Consensus 82 ~~-----------------------------------------------------~~~~~~~~~~~v~~v~~~p~~~~l~ 108 (281)
.. ....+..|...|.+++|+|++.+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 11 1123456888899999999999999
Q ss_pred EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccce
Q 023500 109 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH 188 (281)
Q Consensus 109 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 188 (281)
+++.|+.|++|++.... ....+ .+|...|.+++|+|++ .+++++.|+.|++||+.... .
T Consensus 264 ~~~~d~~i~i~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-----------~ 322 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGN-----SQNCF----YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT-----------L 322 (425)
T ss_dssp EEETTSCEEEECSSSBS-----CSEEE----CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE-----------E
T ss_pred EEcCCCEEEEEECCCCc-----cceEe----cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc-----------E
Confidence 99999999999876532 12222 3578899999999999 99999999999999986432 1
Q ss_pred eEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCC-----------ccceeeeeeccCCCC--CeeEEE
Q 023500 189 LCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG-----------PSYKMLLKKEKAHDM--DVNSVQ 254 (281)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~h~~--~v~~~~ 254 (281)
...+. .+...+.++.|++++ ++++++.|+.+++|+......... +...........|.. .|++++
T Consensus 323 ~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 22222 367789999999876 688888999999998764320000 000013344566765 999999
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 255 WSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
|+|+++ +|++++.||.|++|++.
T Consensus 402 ~s~~~~-~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGN-KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSS-EEEEEESSSCCEEEECC
T ss_pred ccCCCc-eEEEEecCceEEEEeec
Confidence 999886 57899999999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=262.24 Aligned_cols=253 Identities=24% Similarity=0.405 Sum_probs=203.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|+|++||+|+.|+.|++||..+++ .+..+.+|.+.|.+++|+|+|++|++++.|++|++||+..+.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~- 690 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK- 690 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-
Confidence 78899999999999999999999999999987764 467888999999999999999999999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.+..+.+|...|.+++|+|+ ..++++++.|+.|++|++.... +...+ .+|...|.+++|+|++++|+
T Consensus 691 --~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-----~~~~~----~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 691 --LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-----CRNTM----FGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp --EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-----EEEEE----CCCSSCEEEEEECSSTTEEE
T ss_pred --eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-----hhhee----cCCCCCEEEEEEecCCCEEE
Confidence 46677899999999999995 4589999999999999887542 23333 37899999999999999999
Q ss_pred EeeCCCcEEEEeCCccccccC----C--------------CC-------------------------cccceeEEeeccc
Q 023500 160 SCSDDLTIKIWGADITRMQSG----D--------------GY-------------------------ASWRHLCTISGYH 196 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~----~--------------~~-------------------------~~~~~~~~~~~~~ 196 (281)
+++.||.|++||+........ . .. ............|
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~ 839 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence 999999999999764321100 0 00 0000111122245
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
...+.++.|++++ .+++++.|+.+++|+.... .......+|...|++++|+|++. .+++++.||.|++|
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR---------LKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVW 909 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------ceeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 6788889999865 6788889999999977532 22344568999999999999876 57899999999999
Q ss_pred Ecc
Q 023500 276 ELA 278 (281)
Q Consensus 276 ~~~ 278 (281)
++.
T Consensus 910 ~~~ 912 (1249)
T 3sfz_A 910 ETK 912 (1249)
T ss_dssp EHH
T ss_pred Ecc
Confidence 975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=227.31 Aligned_cols=267 Identities=17% Similarity=0.338 Sum_probs=197.5
Q ss_pred CccceeEEEEcCC----CCEEEEeeCCCcEEEEecCCCce-eeeeeec--CCCCCeeEEEEcCC----CCEEEEecCCCc
Q 023500 2 HTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDY-ECVATLE--GHENEVKSVSWNAS----GTLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~~~~----~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~~--~h~~~v~~v~~~~~----~~~l~s~~~d~~ 70 (281)
|...|++++|+|+ ...+++++.++.|++|+..++.. ..+.... .|...|.+++|+|+ +.+|++|+.|+.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 7899999999994 44566666677999999875432 2222222 36788999999998 679999999999
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEE
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
|++||+..++ .+..+.+|...|.+++|+| +++++++++.|+.|++|++.... .+..+. ...+|...|.++
T Consensus 97 i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~-~~~~~~~~v~~~ 167 (366)
T 3k26_A 97 IRIINPITMQ---CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----LVAIFG-GVEGHRDEVLSA 167 (366)
T ss_dssp EEEECTTTCC---EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----EEEEEC-STTSCSSCEEEE
T ss_pred EEEEEchhce---EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----EEEEec-ccccccCceeEE
Confidence 9999987654 3566778999999999999 89999999999999999887542 222221 124688999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccC-----------CCCcc-----cceeEEeecccCcceEEEEeCCCceeee
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSG-----------DGYAS-----WRHLCTISGYHDRTIFSVHWSREGIIAS 213 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (281)
+|+|++.+|++++.|+.|++||+...+.... ..... ..........|...|.++.|+ ..++++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~ 246 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILS 246 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEE
Confidence 9999999999999999999999874332100 00000 000011112377889999998 668999
Q ss_pred cCCCCcEEEEecccCCCc-----CCccceeeeeeccCCCCCeeEEEEcCC--CCeeEEEeCCCCeEEEEEccc
Q 023500 214 GAADDSVQFFVESKDDLI-----DGPSYKMLLKKEKAHDMDVNSVQWSPG--ERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 214 ~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++.|+.+++|+....... ..............|...|++++|+|+ +. +|++++.||.|++||+..
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCS
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCC
Confidence 999999999987643220 011112234455678899999999998 65 688999999999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=232.78 Aligned_cols=248 Identities=21% Similarity=0.391 Sum_probs=192.0
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCce-----eeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEE
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIW 74 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w 74 (281)
|...|++++|+| ++++||+|+.|+.|+||+..++.. .++..+.+|...|.+++|+|++ ++|++++.|++|++|
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 788999999999 999999999999999999876532 3467788999999999999998 699999999999999
Q ss_pred EecCCCeeEEeEee--cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc-EEEEEE
Q 023500 75 EVMPGNEFECVSVL--QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IWALSF 151 (281)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~ 151 (281)
|+..+. .+..+ .+|...|.+++|+|++.++++++.|+.|++|++.... .+..+. .+|... +.++.|
T Consensus 160 d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~---~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 160 DVGTGA---AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKD---RPHEGTRPVHAVF 228 (402)
T ss_dssp ETTTTE---EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEE---CSSCSSSCCEEEE
T ss_pred ECCCCC---ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeec---cCCCCCcceEEEE
Confidence 997653 45566 7899999999999999999999999999999887542 222221 245554 789999
Q ss_pred ccCCCEEEEe---eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-ee-eecCCCCcEEEEecc
Q 023500 152 NAKGDKLVSC---SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II-ASGAADDSVQFFVES 226 (281)
Q Consensus 152 ~~~~~~l~s~---~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~d~~~~~~~~~ 226 (281)
+|++.+|++| +.|+.|++||...... ........+...+.++.|++++ .+ ++++.|+.+++|+..
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEE----------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSS----------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccC----------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 9999999999 7999999999864321 0111122245678899999876 34 456689999999876
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
... .....+... .|..+|++++|+|++. +++ +.|+.+++|++..
T Consensus 299 ~~~-----~~~~~l~~~-~~~~~v~~~~~sp~~~-~~~--s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 299 SEA-----PFLHYLSMF-SSKESQRGMGYMPKRG-LEV--NKCEIARFYKLHE 342 (402)
T ss_dssp SST-----TCEEEEEEE-CCSSCCSEEEECCGGG-SCG--GGTEEEEEEEEET
T ss_pred CCC-----cceEeeccc-ccCCcccceEEecccc-cce--ecceeEEEEEcCC
Confidence 432 111122222 3678999999999875 343 4577999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=232.40 Aligned_cols=251 Identities=15% Similarity=0.196 Sum_probs=192.4
Q ss_pred CccceeEEEEcCC----C---CEEEEeeCCCcEEEEecCCCce---eeeeeecCC-----CCCeeEEEEc----CCCCE-
Q 023500 2 HTRTVRSCAWSPS----G---KLLATASFDATTCIWEDVGGDY---ECVATLEGH-----ENEVKSVSWN----ASGTL- 61 (281)
Q Consensus 2 h~~~i~~~~~~~~----~---~~l~tg~~d~~i~lw~~~~~~~---~~~~~~~~h-----~~~v~~v~~~----~~~~~- 61 (281)
|...|++++|+|+ + ++|++|+.|+.|++|+..++.. .....+.+| ...|.+++|+ |++.+
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 7789999999999 9 9999999999999999865541 115566778 5999999999 99999
Q ss_pred EEEecCCCcEEEEEecC------CCeeE--EeEee-------cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 62 LATCGRDKSVWIWEVMP------GNEFE--CVSVL-------QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 62 l~s~~~d~~v~~w~~~~------~~~~~--~~~~~-------~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
|++++.|+.|++||+.. ..... +...+ ..|...|.+++|+|++ ++++++.|+.|++|++...
T Consensus 141 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-- 217 (397)
T 1sq9_A 141 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-- 217 (397)
T ss_dssp EEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT--
T ss_pred EEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC--
Confidence 99999999999999986 33211 11133 4588899999999999 9999999999999988753
Q ss_pred CCceeeeeeeeccCCc---cccEEEEEEccCCCEEEEeeCC---CcEEEEeCCccccccCCCCcccceeEEeec------
Q 023500 127 DNWHCVQTISESNNGH---SSTIWALSFNAKGDKLVSCSDD---LTIKIWGADITRMQSGDGYASWRHLCTISG------ 194 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~------ 194 (281)
+.+..+.. ..+| ...|.+++|+|++.+|++++.| +.|++||+...+. ...+..
T Consensus 218 ---~~~~~~~~-~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~ 282 (397)
T 1sq9_A 218 ---RPLYNFES-QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQ 282 (397)
T ss_dssp ---EEEEEEEC-CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC-----
T ss_pred ---ceeEEEec-cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCccccc
Confidence 22333321 1127 7889999999999999999999 9999999864321 112211
Q ss_pred ------ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeecc------CC---------------
Q 023500 195 ------YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK------AH--------------- 246 (281)
Q Consensus 195 ------~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h--------------- 246 (281)
.|...+.+++|++++ ++++++.|+.+++|+..... ...... .|
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---------RITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------EEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---------eeEEEecccCcccchhhhhcccccccccc
Confidence 167889999999875 78888999999999775421 111222 45
Q ss_pred CCCeeEEEEcCCCC---------eeEEEeCCCCeEEEEEccc
Q 023500 247 DMDVNSVQWSPGER---------RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 247 ~~~v~~~~~~~~~~---------~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+|++++|+|+++ .+|++++.||.|++|++..
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 89999999999863 4788999999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=220.98 Aligned_cols=237 Identities=22% Similarity=0.303 Sum_probs=192.0
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...|++++|+|++++|++|+.|+.+++|+..... ......+.+|...|.+++| +++++++++.|+.|++|| ..
T Consensus 58 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~- 132 (313)
T 3odt_A 58 GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG- 132 (313)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT-
T ss_pred CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC-
Confidence 67889999999999999999999999999975432 2446678899999999999 578999999999999999 22
Q ss_pred eeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.....+..|...+.++.|+| +++.+++++.|+.|++|+... ....+. ..|...+.+++|+|++. ++
T Consensus 133 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~---~~~~~~i~~~~~~~~~~-~~ 199 (313)
T 3odt_A 133 --SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFS---GIHNDVVRHLAVVDDGH-FI 199 (313)
T ss_dssp --EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEEC---SSCSSCEEEEEEEETTE-EE
T ss_pred --cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEe---ccCcccEEEEEEcCCCe-EE
Confidence 34566778999999999998 889999999999999997321 222221 23788899999999987 99
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
+++.|+.|++||.+..+ ....+. .|...+.++.|++++.+++++.|+.+++|+.... ..
T Consensus 200 ~~~~dg~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---------~~ 258 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---------SL 258 (313)
T ss_dssp EEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------CE
T ss_pred EccCCCeEEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------ce
Confidence 99999999999986432 222222 4778999999999999999999999999976542 12
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......|..+|++++|+|+++ +++++.||.|++|++..
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 259 KQVITLPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEECSSSCEEEEEECTTSC--EEEEETTSCEEEEESCG
T ss_pred eEEEeccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCC
Confidence 333456888999999999875 45788899999999875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=228.82 Aligned_cols=254 Identities=16% Similarity=0.251 Sum_probs=186.6
Q ss_pred CccceeEEEEcCC---CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~---~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|.+.|++++|+|+ |++|++|+.|+.|+||+..+........+.+|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 7899999999999 6999999999999999987633344467888999999999999999999999999999999976
Q ss_pred CCeeEEeEeecCCccceeEEEe--cCCCCeEEEEecCCeEEEEeCCCCCCCCceee------------------------
Q 023500 79 GNEFECVSVLQGHAQDVKMVQW--HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV------------------------ 132 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~--~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~------------------------ 132 (281)
... . .+.+|...|.+++| +|++.++++++.|+.|++|++...........
T Consensus 118 ~~~---~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 193 (368)
T 3mmy_A 118 NQA---I-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLI 193 (368)
T ss_dssp TEE---E-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEE
T ss_pred CCc---e-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEE
Confidence 542 2 24568999999999 89999999999999999999865421100000
Q ss_pred --------eeeeeccCCccccEEEEEEccCCCE----EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec------
Q 023500 133 --------QTISESNNGHSSTIWALSFNAKGDK----LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG------ 194 (281)
Q Consensus 133 --------~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~------ 194 (281)
.........+...+.++.+.++... +++++.|+.+++|+.+..... .....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~--------~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 194 VYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA--------KDNFTFKCHRSNGT 265 (368)
T ss_dssp EEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--------HHSEEEECSEEC--
T ss_pred EEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--------ccceeeeeeecccc
Confidence 0000000112233455666554443 999999999999998754220 01111111
Q ss_pred -----ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 195 -----YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 195 -----~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.+..++.++.|+|++ ++++++.|+.+++|+.... ........|..+|++++|+|+++ +|++++.
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~-~l~~~s~ 335 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGN-IFAYASS 335 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSS-CEEEEEC
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCC-eEEEEec
Confidence 122379999999976 7889999999999977532 22344567899999999999886 5778888
Q ss_pred CCeEEEEEc
Q 023500 269 DGMIKIWEL 277 (281)
Q Consensus 269 Dg~v~iw~~ 277 (281)
|+..+.|++
T Consensus 336 d~~~~~~~~ 344 (368)
T 3mmy_A 336 YDWSKGHEF 344 (368)
T ss_dssp CCSTTCGGG
T ss_pred ccccccccc
Confidence 876555543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=229.90 Aligned_cols=249 Identities=22% Similarity=0.353 Sum_probs=189.8
Q ss_pred eeEEEEcCCCCE-EEEeeCCCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCe
Q 023500 6 VRSCAWSPSGKL-LATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 6 i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
...++++|+... +++|+.||.|+||+...... ..+..+.+|.+.|.+++|+| ++.+|++|+.|++|++|++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 445788887754 45689999999999754321 23456789999999999999 999999999999999999976531
Q ss_pred e----EEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 82 F----ECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 82 ~----~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
. .++..+.+|...|.+++|+|++ +++++++.|++|++|+++... .+..+. ..+|...|.+++|+|++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~--~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----AVLTLG--PDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----EEEEEC--TTTCCSCEEEEEECTTSS
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----ccEEEe--cCCCCCceEEEEECCCCC
Confidence 1 2356778999999999999998 699999999999999987542 232221 146889999999999999
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc-ceEEEEeCCCcee-eec---CCCCcEEEEecccCCCc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREGII-ASG---AADDSVQFFVESKDDLI 231 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-~~~---~~d~~~~~~~~~~~~~~ 231 (281)
+|++++.|+.|++||++... ....+...|.. .+.++.|++++.+ +++ +.|+.+++|+......
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~- 257 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGT-----------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE- 257 (402)
T ss_dssp CEEEEETTSEEEEEETTTTE-----------EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-
T ss_pred EEEEEecCCcEEEEeCCCCc-----------eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-
Confidence 99999999999999986432 22222122433 4788999998754 455 5899999998764321
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .......|...+.+++|+|++..++++++.||.|++|++..
T Consensus 258 ---~---~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 258 ---P---LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp ---C---SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred ---C---ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 0 11112346778999999999887667888899999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=232.28 Aligned_cols=245 Identities=10% Similarity=0.071 Sum_probs=181.0
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce---------------------------eeeeeec-CCCCCeeEEE
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY---------------------------ECVATLE-GHENEVKSVS 54 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~---------------------------~~~~~~~-~h~~~v~~v~ 54 (281)
...|.+++|+|||+++||++.|++|+ |....+. .....+. +|...|.+++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 35689999999999999999999995 3221110 0001222 5678899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc-----ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC-
Q 023500 55 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-----DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN- 128 (281)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~- 128 (281)
|||+|.+||+++.||+|++|+... ++..+. |.. .+.+++|+|++++|++|+.||+|++|++.......
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 999999999999999999999532 445555 554 59999999999999999999999999987643111
Q ss_pred -ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC
Q 023500 129 -WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 207 (281)
Q Consensus 129 -~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (281)
+..+.++.....+|...|.+++|+|++ +++++.|+++++|+.+..... .....+...|...|.+++|+
T Consensus 167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--------~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 167 EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--------PVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--------CCEEEEECCCSSCCCCEEEE-
T ss_pred cceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--------cceeeecccccCcEEEEEEE-
Confidence 112333332335788999999999998 888899999999998643210 01122323466789999998
Q ss_pred CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEE--cCCCCeeEEEeCCCCeEEEEEcc
Q 023500 208 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW--SPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 208 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+..+++++ ++.+++|+.... .......+|...|..++| +|++. .++++.+||+ ++|...
T Consensus 236 g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS
T ss_pred CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec
Confidence 66777776 699999977542 111222269999999999 99874 6889999999 999863
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=230.54 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=186.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecC---CCcee------eeeee--cC--CCCCeeEEE--EcCCCCEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDV---GGDYE------CVATL--EG--HENEVKSVS--WNASGTLLATCG 66 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~---~~~~~------~~~~~--~~--h~~~v~~v~--~~~~~~~l~s~~ 66 (281)
|...|++++|+|++++|++|+.|+.|++||.. .++.. .+..+ .. +...+.++. ++|++.+|++|+
T Consensus 110 h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 67899999999999999999999999999873 22211 11111 12 566777777 568899999999
Q ss_pred CCCcEEEEEecCCCeeEEeEeecC--CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQG--HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
.|+.|++||+.... ++..+.+ |...|++++|+|++.++++++.|++|++|++... +++..+. .+|..
T Consensus 190 ~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~ 258 (437)
T 3gre_A 190 NLSRVIIFDIRTLE---RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWS---FGDHA 258 (437)
T ss_dssp TTSEEEEEETTTCC---EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEB---CTTCE
T ss_pred CCCeEEEEeCCCCe---eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEe---cCCCC
Confidence 99999999997654 3455666 8889999999999999999999999999988753 2333322 25677
Q ss_pred cEEEEEEcc----CCCEEEEeeCCCcEEEEeCCccccccC-CCC----c--ccceeE------Eee-cccCcceEEEEeC
Q 023500 145 TIWALSFNA----KGDKLVSCSDDLTIKIWGADITRMQSG-DGY----A--SWRHLC------TIS-GYHDRTIFSVHWS 206 (281)
Q Consensus 145 ~v~~~~~~~----~~~~l~s~~~d~~i~~w~~~~~~~~~~-~~~----~--~~~~~~------~~~-~~~~~~v~~~~~~ 206 (281)
.|.+++|+| ++.+|++|+.|+.|++||+...+.... .+. . .+.+.. .+. ..|...|.+++++
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 899996665 567999999999999999874432110 000 0 000000 000 1256778899999
Q ss_pred CCceeeecCCCCcEEEEecccCCCcCCccc----------------------------eeeeeeccCCCCCeeEEEEcCC
Q 023500 207 REGIIASGAADDSVQFFVESKDDLIDGPSY----------------------------KMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 207 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
++.++++++.|+.+++|+............ .........|...|++++|+++
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~ 418 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV 418 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence 667899999999999998764322110000 0000112348999999999997
Q ss_pred -CCeeEEEeCCCCeEEEEE
Q 023500 259 -ERRLLASASDDGMIKIWE 276 (281)
Q Consensus 259 -~~~~~~s~~~Dg~v~iw~ 276 (281)
+..+|++|+.||.|+||+
T Consensus 419 ~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 419 DETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSEEEEEEETTSCEEEEC
T ss_pred CCceEEEEEcCCceEEEeC
Confidence 346899999999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=226.19 Aligned_cols=240 Identities=24% Similarity=0.427 Sum_probs=191.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEc--CCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|++ +|++|+.|+.|++||..+++ ++..+.+|.+.|.+++|+ +++.++++|+.|++|++||+...
T Consensus 161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237 (464)
T ss_dssp CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc--EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence 78999999999988 99999999999999987764 577888999999999998 57789999999999999999765
Q ss_pred CeeE--------------------EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 80 NEFE--------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 80 ~~~~--------------------~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
.... ....+.+|...+.++ +|+++++++++.|+.|++|++... +++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~---- 306 (464)
T 3v7d_B 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-----KCLYIL---- 306 (464)
T ss_dssp CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-----EEEEEE----
T ss_pred cccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-----cEEEEe----
Confidence 4221 245677888888776 677889999999999999988653 233333
Q ss_pred CCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCc
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDS 219 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~ 219 (281)
.+|...|.+++|+|++.+|++|+.|+.|++||.+.++ ....+. .|...+.++.++ +.++++++.|+.
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~-~~~l~s~s~dg~ 373 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----------LMYTLQ-GHTALVGLLRLS-DKFLVSAAADGS 373 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----------EEEEEC-CCSSCEEEEEEC-SSEEEEEETTSE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEEe-CCCCcEEEEEEc-CCEEEEEeCCCc
Confidence 4788999999999999999999999999999986432 222222 477889999998 468999999999
Q ss_pred EEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+++|+..... .... ..|...+..++|+|++. ++++++ ||.|++||+...
T Consensus 374 v~vwd~~~~~--------~~~~--~~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 374 IRGWDANDYS--------RKFS--YHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEETTTCC--------EEEE--EECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTC
T ss_pred EEEEECCCCc--------eeee--ecCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCC
Confidence 9999775421 1111 13566788889999875 677777 999999998753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=219.76 Aligned_cols=198 Identities=23% Similarity=0.410 Sum_probs=165.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|.++.|++++. +++++.|+.|++||..++. ++..+.+|.+.|.+++|+|++++|++|+.|++|++||+..+.
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~- 217 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM- 217 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-
T ss_pred CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-
Confidence 778899999998876 7799999999999987764 567888999999999999999999999999999999997654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+...+.+|...|++++|+|+++++++++.|++|++||+.... .+..+. ...+...|.+++|+|++++|++|
T Consensus 218 --~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~--~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 218 --CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYS--HDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEEC--CTTCCSCEEEEEECTTSSEEEEE
T ss_pred --eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEc--cCCcccceEEEEECCCCCEEEEE
Confidence 456788999999999999999999999999999999886532 222221 12344579999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEe
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV 224 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~ 224 (281)
+.|+.|++||..... ....+. .|..+|.++.|++++ ++++++.|+.+++|+
T Consensus 289 ~~d~~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKAD-----------RAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCc-----------EeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999975332 122333 478899999999987 688999999999993
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-31 Score=224.42 Aligned_cols=245 Identities=22% Similarity=0.407 Sum_probs=190.5
Q ss_pred Cccce-eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i-~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|...| .++.+ ++++|++|+.||.|++||..+++ ++..+.+|.+.|.+++|+|++ .|++|+.|++|++||+..+.
T Consensus 120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~ 194 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC 194 (464)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc--EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence 55554 55555 67899999999999999987764 577888999999999999988 99999999999999997653
Q ss_pred eeEEeEeecCCccceeEEEec--CCCCeEEEEecCCeEEEEeCCCCCCCCceeee--------------eeeeccCCccc
Q 023500 81 EFECVSVLQGHAQDVKMVQWH--PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQ--------------TISESNNGHSS 144 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~--p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~--------------~~~~~~~~h~~ 144 (281)
++..+.+|...|.+++|+ |++.++++++.|++|++|++............ .+.....+|..
T Consensus 195 ---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 195 ---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp ---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred ---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 567788999999999998 56789999999999999998764321100000 00112346788
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
.|.++ ++++.++++++.|+.|++||+...+ ....+ ..|...+.++.+++++ .+++++.|+.+++|
T Consensus 272 ~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-----------~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 272 SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-----------CLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp CEEEE--EEETTEEEEEETTSCEEEEETTTTE-----------EEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 88766 5778899999999999999986432 22222 2477889999999875 78899999999999
Q ss_pred ecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
+.... .......+|...|.++.|++ .++++++.||.|++||+...
T Consensus 338 d~~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 338 DLENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp ETTTT---------EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC
T ss_pred ECCCC---------cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC
Confidence 77542 23344567999999999984 36889999999999998753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=222.49 Aligned_cols=211 Identities=27% Similarity=0.523 Sum_probs=168.7
Q ss_pred CccceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~~w~~~ 77 (281)
|...|++++|+| ++++||+|+.|++|+|||..++.......+.+|...|++++|+|+ +.+|++|+.|++|++|++.
T Consensus 56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence 788999999986 489999999999999999877655566778899999999999997 7899999999999999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCC-----------------CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPT-----------------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 140 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~-----------------~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 140 (281)
..........+.+|...|.++.|+|+ +.+|++++.|++|++|+++... .+++.. ...
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~----~l~ 209 (316)
T 3bg1_A 136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQ----KLE 209 (316)
T ss_dssp SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEE----CCB
T ss_pred CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceee----ecc
Confidence 65444445667789999999999997 3689999999999999885421 112222 234
Q ss_pred CccccEEEEEEccCC----CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecC
Q 023500 141 GHSSTIWALSFNAKG----DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA 215 (281)
Q Consensus 141 ~h~~~v~~~~~~~~~----~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 215 (281)
+|...|.+++|+|++ .+|++|+.|++|++|+.+..... .+.. ..+ ..|...+.+++|+|++ ++++++
T Consensus 210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------~~~~-~~~-~~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------TWSP-KLL-HKFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------CCBC-CEE-EECSSCEEEEEECTTTCCEEEEE
T ss_pred cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc------chhh-hhh-hcCCCcEEEEEEcCCCCEEEEEc
Confidence 799999999999986 78999999999999987632100 0000 011 2357889999999976 678899
Q ss_pred CCCcEEEEecc
Q 023500 216 ADDSVQFFVES 226 (281)
Q Consensus 216 ~d~~~~~~~~~ 226 (281)
.|+.+++|+..
T Consensus 282 ~D~~v~lw~~~ 292 (316)
T 3bg1_A 282 GDNKVTLWKES 292 (316)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCeEEEEEEC
Confidence 99999999653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=224.35 Aligned_cols=243 Identities=28% Similarity=0.452 Sum_probs=190.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++| ++++|++|+.||.|++||..+++ ++..+.+|...|.+++|++ ..+++|+.|+.|++||+.....
T Consensus 172 h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 172 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC--EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc--EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence 7788999988 78999999999999999987764 4678889999999999974 5999999999999999987665
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
......+.+|...|.+++| +++++++++.|+.|++|+++... .+..+ .+|...|.++.|+ +.++++|
T Consensus 246 ~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~----~~~~~~v~~~~~~--~~~l~~g 312 (435)
T 1p22_A 246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE-----FVRTL----NGHKRGIACLQYR--DRLVVSG 312 (435)
T ss_dssp CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC-----EEEEE----ECCSSCEEEEEEE--TTEEEEE
T ss_pred ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc-----EEEEE----cCCCCcEEEEEeC--CCEEEEE
Confidence 5445678899999999999 67899999999999999887542 33333 3688899999984 5799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+.|++||...... ...+. .|...+.++.+ ....+++++.|+.+++|+.........+.......
T Consensus 313 ~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 379 (435)
T 1p22_A 313 SSDNTIRLWDIECGAC-----------LRVLE-GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379 (435)
T ss_dssp ETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred eCCCeEEEEECCCCCE-----------EEEEe-CCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence 9999999999864321 22222 37788999999 45689999999999999875432111111111344
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....|...|++++|. +. .|++++.||.|++||+..
T Consensus 380 ~~~~h~~~v~~l~~~--~~-~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 380 TLVEHSGRVFRLQFD--EF-QIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EECCCSSCCCCEEEC--SS-CEEECCSSSEEEEEC---
T ss_pred eccCCCCCeEEEEeC--CC-EEEEEeCCCEEEEEECCC
Confidence 456899999999993 43 578999999999999865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=218.04 Aligned_cols=198 Identities=24% Similarity=0.427 Sum_probs=166.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|.+++|+|+++.|++|+.|+.|++||..+++ ++..+.+|...|.+++|+| +|.+|++|+.|++|++||+..+
T Consensus 153 h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 78889999999999999999999999999987764 4678889999999999988 4789999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
. ++..+.+|...|++++|+|++.++++++.|++|++||+.... .+..+. ...+...+.+++|+|++.+|+
T Consensus 231 ~---~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~--~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 231 Q---CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-----EVAIYS--KESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp C---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEEC--CTTCCSCEEEEEECTTSSEEE
T ss_pred c---EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEc--CCCcccceeEEEEeCCCCEEE
Confidence 4 466788999999999999999999999999999999886532 222221 112345688999999999999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
+|+.|+.|++||+.... ....+ ..|...|.+++|+|++ ++++++.|+.+++|
T Consensus 301 ~g~~d~~i~vwd~~~~~-----------~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKGS-----------RVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp EEETTSCEEEEETTTCS-----------EEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEECCCcEEEEECCCCc-----------eEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 99999999999985332 12222 2478899999999987 68899999999999
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=221.35 Aligned_cols=204 Identities=15% Similarity=0.114 Sum_probs=159.1
Q ss_pred ccceeEEEEcCCCCEEE--EeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 3 TRTVRSCAWSPSGKLLA--TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~--tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
...+.+++|+|||+++| +++.|+.|+|||..+.+ ++..+. |.+.|.+++|+|+|++|++++.|+ +.+|+...+.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--EKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--EEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--EEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence 34588999999999876 45578999999988764 355554 788999999999999999998654 6667765554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCC----eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
. ........|...|++++|+|++..+++++.|+ .+++|++..... .........+|...|++++|+|+++
T Consensus 209 ~-~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 209 C-IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----SVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp E-EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----EEEEEEEEESSCSCEEEEEECTTSC
T ss_pred c-eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----cceeeeeecCCCCCeEeEEECCCCC
Confidence 3 22345567888999999999999999999888 678887654321 1111112246888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+|++|+.|++|++||++..+ .+..+...|..+|.+++|+|++ ++++++.|+++++|++..
T Consensus 283 ~lasgs~D~~V~iwd~~~~~-----------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLS-----------MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSCEEEEETTTTE-----------EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ceEEEcCCCEEEEEECCCCc-----------EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999986432 2333344689999999999987 688999999999998854
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=228.72 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=168.0
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCcee---eeeeecCCCCCeeEEEEcC--------CCCEEEEecCCCcEEEEEecC
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNA--------SGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~---~~~~~~~h~~~v~~v~~~~--------~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.+.+++.+||+|+.|++|+|||...++.. .+..+.+|.+.|++++|+| ++++|+|||.|++|++||+..
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 34456678999999999999998776432 3456789999999999998 789999999999999999976
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCce---------eeeee-------eeccCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWH---------CVQTI-------SESNNG 141 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~---------~~~~~-------~~~~~~ 141 (281)
.. +...+.+|...+.+++|+|++. ++++++.|++|++||+......... ..... .....+
T Consensus 176 ~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 176 EG---PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp TE---EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred Cc---eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 54 3445567888899999999875 7999999999999998754211000 00000 001236
Q ss_pred ccccEEEEEEc-cCCCEEEEeeCCCcEEEEeCCccccccCCCCc-------ccceeEEeecccCcceEEEEeC-CCc-ee
Q 023500 142 HSSTIWALSFN-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYA-------SWRHLCTISGYHDRTIFSVHWS-REG-II 211 (281)
Q Consensus 142 h~~~v~~~~~~-~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~-~~~-~~ 211 (281)
|...+.++.|+ +++..+++++.|+++++||+...+........ ...+.......+...+..+.+. .++ ++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 78889999987 79999999999999999998644321110000 0000000000111222222222 233 46
Q ss_pred eecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 212 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 212 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
++|+.|+.+++|+...... ......|..+|++++|+|+|+ +||++++||. .+|.+
T Consensus 333 ~sgs~Dg~V~lwd~~~~~~---------~~~~~~~~~~V~svafspdG~-~LA~as~~Gv-~lvrL 387 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKDS---------NSIPIQLGMPIVDFCWHQDGS-HLAIATEGSV-LLTRL 387 (393)
T ss_dssp EEETTTTEEEEEETTCTTC---------CEEEEECSSCEEEEEECTTSS-EEEEEESSEE-EEEEE
T ss_pred EEECCCCEEEEEECCCCcE---------EEEecCCCCcEEEEEEcCCCC-EEEEEeCCCe-EEEEE
Confidence 7788899999998754321 112335778999999999986 5788887665 44443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=230.33 Aligned_cols=243 Identities=16% Similarity=0.277 Sum_probs=195.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCC--ceeeeeeecCCCCC-eeEEEEcC--CCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYECVATLEGHENE-VKSVSWNA--SGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~--~~~~~~~~~~h~~~-v~~v~~~~--~~~~l~s~~~d~~v~~w~~ 76 (281)
|...|++++|+|+|++||+++ ++.+.+|+..++ .......+.+|.+. |.+++|+| ++++|++++.|++|++||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 678899999999999999998 889999998755 11246788899999 99999999 9999999999999999999
Q ss_pred cCCC-----eeEEeEeecCCccceeEEEecCCCCeEEEEecC----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 77 MPGN-----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 77 ~~~~-----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
..+. .......+..|...|.+++|+|+++++++++.+ +.|++|+... .+.. ..+|...|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~-------~~~~----~~~~~~~v~ 164 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-------SLGE----VSGHSQRIN 164 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-------EEEE----CCSCSSCEE
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC-------ccee----eecCCccEE
Confidence 6431 234566778899999999999999999999988 6899996221 2222 247889999
Q ss_pred EEEEccCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc---ceEEEEeCCC-c-eeeecCCCCcEE
Q 023500 148 ALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR---TIFSVHWSRE-G-IIASGAADDSVQ 221 (281)
Q Consensus 148 ~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~-~~~~~~~d~~~~ 221 (281)
+++|+|++. .+++++.|+.|++||....+ ....+. .|.. .+.++.|+|+ + ++++++.|+.++
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----------~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBE-----------EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----------eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 999999997 89999999999999975432 222222 3566 8999999988 5 688889999999
Q ss_pred EEecccCCCcCCccceeeeeec-c---CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 222 FFVESKDDLIDGPSYKMLLKKE-K---AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+|+..... ..... . .|...|++++|+ ++. ++++++.|+.|++||+..
T Consensus 233 vwd~~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 233 CFDGKSGE---------FLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTT 283 (615)
T ss_dssp EEETTTCC---------EEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTT
T ss_pred EEECCCCC---------EeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCC
Confidence 99765321 12222 3 789999999999 664 678999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-31 Score=237.88 Aligned_cols=245 Identities=20% Similarity=0.276 Sum_probs=198.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++||+|+.|+.|++|+..+++ .+..+.+|.+.|.+++|+|++.+|++++.|++|++|++..+.
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~- 130 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW- 130 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-
T ss_pred CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-
Confidence 78899999999999999999999999999987764 466788999999999999999999999999999999997653
Q ss_pred eEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc--CCCEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKL 158 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l 158 (281)
.....+.+|...|.+++|+| ++..+++++.|++|++|++..... ...+. ..|...+.+++|+| ++.+|
T Consensus 131 -~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~---~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 131 -ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLT---TGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp -EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEE---CCCTTCCCEEEECCSTTCCEE
T ss_pred -eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEe---cCCCCCEEEEEEEECCCCCEE
Confidence 34566788999999999999 788999999999999999865421 11121 23457789999999 89999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++++.||.|++||..... ....+. .|...+.++.|+|++ .+++++.|+.+++|+....
T Consensus 202 ~~~~~dg~i~~~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--------- 260 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKS-----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--------- 260 (814)
T ss_dssp EEECTTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------
T ss_pred EEEeCCCEEEEEECCCCc-----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------
Confidence 999999999999976432 122222 367889999999987 6888899999999976542
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
........|...+++++|+|++..++++++.|+.+.+|++..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 123344567789999999999876544555577888998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=223.38 Aligned_cols=230 Identities=17% Similarity=0.338 Sum_probs=176.2
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCe
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV 106 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 106 (281)
+..|+... ..+..++.+|.+.|++++|+|++++|+|||.|++|++||+..+. ....+..|...|.+++|+|++++
T Consensus 48 ~~~~~~~~--~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~ 122 (380)
T 3iz6_a 48 AVSFNPTD--LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQS 122 (380)
T ss_dssp CCCCCCCC--CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSE
T ss_pred ccccccce--eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCE
Confidence 33454433 35678899999999999999999999999999999999986553 45677889999999999999999
Q ss_pred EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC-CEEEEeeCCCcEEEEeCCccccccCCCCcc
Q 023500 107 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYAS 185 (281)
Q Consensus 107 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 185 (281)
+++++.|+.+++|++........ .........+|...|.++.|+|++ ..|++|+.|++|++||+..++......
T Consensus 123 las~~~d~~v~iw~~~~~~~~~~--~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--- 197 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRDG--NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG--- 197 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCCC--SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC---
T ss_pred EEEeeCCCcEEEEECCCCccccC--CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee---
Confidence 99999999999999865321110 011122335899999999999974 579999999999999987543211000
Q ss_pred cceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeE
Q 023500 186 WRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL 263 (281)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 263 (281)
......|...+.++.+.+ ..++++++.|+.+++|+.+... .......+|...|++++|+|++. +|
T Consensus 198 ----~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~-~l 264 (380)
T 3iz6_a 198 ----SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--------RAVRTYHGHEGDINSVKFFPDGQ-RF 264 (380)
T ss_dssp ----CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--------CCCEEECCCSSCCCEEEECTTSS-EE
T ss_pred ----cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--------cceEEECCcCCCeEEEEEecCCC-eE
Confidence 001124677899999875 3589999999999999875321 12234467999999999999875 68
Q ss_pred EEeCCCCeEEEEEccc
Q 023500 264 ASASDDGMIKIWELAN 279 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~~ 279 (281)
++|+.||.|+|||+..
T Consensus 265 ~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRT 280 (380)
T ss_dssp EEECSSSCEEEEETTT
T ss_pred EEEcCCCeEEEEECCC
Confidence 8999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=212.27 Aligned_cols=231 Identities=23% Similarity=0.313 Sum_probs=170.1
Q ss_pred EEeeCCCcEEE--EecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCe--eEEeEeecCCcc
Q 023500 19 ATASFDATTCI--WEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNE--FECVSVLQGHAQ 93 (281)
Q Consensus 19 ~tg~~d~~i~l--w~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~--~~~~~~~~~~~~ 93 (281)
.+|...|+..+ +.....+.....+++||.+.|++|+|+|+ +++|+|||.|++|++||+..... ..+...+.+|..
T Consensus 8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 34444454434 33344555566789999999999999997 68999999999999999976532 345677899999
Q ss_pred ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 94 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.|.+++|+|++.++++++.|+.|++|+..... ..... ..+...+....+++++..|++++.|+.+++||..
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-----TTRRF----VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE----ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CEEEEEECCCCCEEEEEcccccceEEeecccc-----eeeee----cCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence 99999999999999999999999999876542 11111 2355677888999999999999999999999875
Q ss_pred ccccccCCCCcccceeEEeecccCcceEEEEeCCC---ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCe
Q 023500 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV 250 (281)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 250 (281)
.... .......|...+..+.++++ .++++++.|+.+++|+.... .......+|..+|
T Consensus 159 ~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------~~~~~~~~h~~~v 218 (340)
T 4aow_A 159 GVCK-----------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------KLKTNHIGHTGYL 218 (340)
T ss_dssp SCEE-----------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCE
T ss_pred CCce-----------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------ceeeEecCCCCcE
Confidence 3221 11112235677888887764 36788999999999977542 2334456799999
Q ss_pred eEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 251 NSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 251 ~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++++|+|+++ +|++|+.||.|++||+..
T Consensus 219 ~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 219 NTVTVSPDGS-LCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp EEEEECTTSS-EEEEEETTCEEEEEETTT
T ss_pred EEEEECCCCC-EEEEEeCCCeEEEEEecc
Confidence 9999999875 688999999999999865
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=218.93 Aligned_cols=234 Identities=23% Similarity=0.472 Sum_probs=186.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|+++++ ++++|++|+.||.|++||..+++ +...+.+|.+.|.+++| ++++|++|+.|++|++||+..+.
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~- 204 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE- 204 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC-
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe--EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc-
Confidence 3456777766 89999999999999999987764 46778899999999998 78899999999999999997664
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+.+|...|.+++|++ ..+++++.|+.|++|++...... .......+|...|.+++| ++.+|++|
T Consensus 205 --~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 205 --MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp --EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred --EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 4567789999999999975 49999999999999998764321 111223478899999999 67799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+.|++||+.... ....+. .|...+.++.++ +..+++++.|+.+++|+.... ....
T Consensus 273 ~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~---------~~~~ 330 (435)
T 1p22_A 273 SGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECG---------ACLR 330 (435)
T ss_dssp ETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTC---------CEEE
T ss_pred eCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeC-CCEEEEEeCCCeEEEEECCCC---------CEEE
Confidence 999999999986432 122222 367788888884 568999999999999977542 1233
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+|...|++++|. + .++++|+.||.|++||+..
T Consensus 331 ~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 331 VLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp EECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHH
T ss_pred EEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCC
Confidence 456799999999994 3 3688999999999999753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-30 Score=216.81 Aligned_cols=236 Identities=22% Similarity=0.429 Sum_probs=181.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
+.+++|++ ..+++++.|+.|++|+..+++...... ..|...|.+++|+|++.+|++|+.|+.|++||+..+. .+
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~ 169 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT---KL 169 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee-cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe---EE
Confidence 34456654 567788999999999998876533322 2388999999999999999999999999999997654 35
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
..+.+|...|.+++|+ +..+++++.|+.|++|++.... .....+ .+|...|.+++|+|++.+|++|+.|+
T Consensus 170 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 170 RTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN----HQIGTL----QGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS----CEEEEE----ECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc----ceeeEE----cCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 6678999999999995 4699999999999999987432 122222 36889999999999999999999999
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC--CCCcEEEEecccCCCcCCccceeeee
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA--ADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
.|++||+.... ....+ ..|...+.+++|+|++ ++++++ .|+.+++|+..... . ..
T Consensus 240 ~v~iwd~~~~~-----------~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~----~~ 298 (401)
T 4aez_A 240 VVQIWDARSSI-----------PKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----R----VN 298 (401)
T ss_dssp CEEEEETTCSS-----------EEEEE-CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----E----EE
T ss_pred eEEEccCCCCC-----------ccEEe-cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----E----EE
Confidence 99999986432 12222 2367889999999854 556544 79999999775421 1 11
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEE-eCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLAS-ASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s-~~~Dg~v~iw~~~~ 279 (281)
.. .|...|++++|+|+++.++++ |+.||.|+||++..
T Consensus 299 ~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 299 TV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred EE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 11 256789999999998754433 55899999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=242.20 Aligned_cols=253 Identities=13% Similarity=0.128 Sum_probs=179.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee--ee--eec-----CCCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC--VA--TLE-----GHENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~--~~--~~~-----~h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
|...+..++|+|++++||||+.|++|++||..++.... .. .+. +|...|++++|+|+|++||+|+.|++|+
T Consensus 434 ~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~ 513 (902)
T 2oaj_A 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV 513 (902)
T ss_dssp SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence 34456667789999999999999999999987654211 11 122 8999999999999999999999999999
Q ss_pred EEEecCCCe------------------------------------------eEEeEeecCCccceeEEEecCCCCeEEEE
Q 023500 73 IWEVMPGNE------------------------------------------FECVSVLQGHAQDVKMVQWHPTMDVLFSC 110 (281)
Q Consensus 73 ~w~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 110 (281)
+|++...+. ++++..+.+|...|++++|+|++ +|++|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence 999975421 24567788999999999999999 99999
Q ss_pred ecCCeEEEEeCCCCCCCCceeee--eeeecc-CCccccEEEEEEc-----cCC---CEEEEeeCCCcEEEEeC---Cccc
Q 023500 111 SYDNTIKVWWAEDTDSDNWHCVQ--TISESN-NGHSSTIWALSFN-----AKG---DKLVSCSDDLTIKIWGA---DITR 176 (281)
Q Consensus 111 s~d~~v~~w~~~~~~~~~~~~~~--~~~~~~-~~h~~~v~~~~~~-----~~~---~~l~s~~~d~~i~~w~~---~~~~ 176 (281)
+.|++|++||++... .+. .+ ... .+|...|++++|+ ||+ .+|++|+.|++|++||+ ..++
T Consensus 593 s~D~tv~lwd~~~~~-----~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPA-----IIYMENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp ETTSEEEEEETTTTE-----EEEEEEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred eCCCcEEEEECCCCe-----EEEEeeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 999999999976532 111 11 123 3899999999999 885 79999999999999997 2222
Q ss_pred cccCCCCcccceeEEeecccCcceEEEE-eC----------------------CCceeeecCCCCcEEEEecccCCCcCC
Q 023500 177 MQSGDGYASWRHLCTISGYHDRTIFSVH-WS----------------------REGIIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~----------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
... ....... ..+..+|.++. ++ +++++++++ +..+++|.....
T Consensus 667 ~~~-----~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~----- 733 (902)
T 2oaj_A 667 FDV-----QLMDITN--VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKS----- 733 (902)
T ss_dssp EEE-----EEEEEEE--CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCC-----
T ss_pred EEE-----EecCcee--cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccc-----
Confidence 110 0000000 01234444443 22 455666655 778999976542
Q ss_pred ccceeeeeeccCCCCCeeEE---E------EcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSV---Q------WSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~---~------~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.. .....|.-.+..+ . |++++. .|+++..||.|++|++..
T Consensus 734 ---k~~-~k~~~~~~~~~~v~~~~~~~~~~~~~~~~-~l~~~~~~g~i~~~s~p~ 783 (902)
T 2oaj_A 734 ---KST-HKGFKYPLAATGLSYISTVEKNNDRKNLT-VIITLEINGHLRVFTIPD 783 (902)
T ss_dssp ---CEE-EEECSSCEEEEEEEEEEEECSSSCEEEEE-EEEEEETTSEEEEEETTT
T ss_pred ---cce-eeEcccceeeeEEEEEEeccccccccCce-EEEEEeCCCcEEEEECcc
Confidence 111 1123444455555 5 667654 688999999999999865
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=244.92 Aligned_cols=260 Identities=24% Similarity=0.431 Sum_probs=199.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|+|++||+|+.|+.|++||..+++ ++..+.+|...|.+++|+| ++.++++|+.|+.|++||+..+
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 78899999999999999999999999999998774 5778889999999999999 4568999999999999999766
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce------------------ee---------
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH------------------CV--------- 132 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~------------------~~--------- 132 (281)
. +...+.+|...|++++|+|++.++++++.|++|++|++......... .+
T Consensus 734 ~---~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 734 E---CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp S---EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred c---hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 4 45677899999999999999999999999999999997643110000 00
Q ss_pred -------------------eeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee
Q 023500 133 -------------------QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 133 -------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 193 (281)
..+.....+|...|.+++|+|++..+++++.|+.|++|+..... ....+
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~- 878 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----------KVADC- 878 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----------EEEEE-
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----------eeeec-
Confidence 00001112678889999999999999999999999999986432 12222
Q ss_pred cccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc-----------------------------------------
Q 023500 194 GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI----------------------------------------- 231 (281)
Q Consensus 194 ~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~----------------------------------------- 231 (281)
..|...|.++.|++++ .+++++.|+.+++|+.......
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 2467788888888876 6788888888888874320000
Q ss_pred -----------------------CCc------cceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 232 -----------------------DGP------SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 232 -----------------------~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++. ..........+|...|++++|+|+++ ++++++.||.|++|++..
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTT
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCC
Confidence 000 00011223457889999999999876 578999999999999865
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=239.41 Aligned_cols=262 Identities=11% Similarity=0.177 Sum_probs=185.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|++++||+|+.||.|+||+..+.+ +...+ .|...|.+++|+| |++|++++.|++|++||+..++.
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~--~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE--VVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE--EEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE--EEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 67899999999999999999999999999876543 23333 4788999999999 88999999999999999976653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee---eccCCccccEEEEEEccC-CCE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNGHSSTIWALSFNAK-GDK 157 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~-~~~ 157 (281)
+..+. |...|++++|+|+++++++|+.|++|++|+++.......+ +..+. ....+|...|.+++|+|+ +..
T Consensus 92 ---~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 92 ---LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp ---EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred ---EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccce-eccccccccccccCCCCeEEEEEccCCCCE
Confidence 33443 6678999999999999999999999999998764311000 00000 123578899999999996 468
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCc--cccee----EEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCC
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYA--SWRHL----CTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 230 (281)
|++|+.|+.+ +||++..+........ ..... ......|...|.+++|+|++ ++++++.|+.+++|+...+..
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 9999999999 9998754321100000 00000 00001234679999999987 688999999999998754321
Q ss_pred cCCccceeeeeecc-------------CCCCCeeEEEEcC----CCCeeEEEeCCC-----CeEEEEEc
Q 023500 231 IDGPSYKMLLKKEK-------------AHDMDVNSVQWSP----GERRLLASASDD-----GMIKIWEL 277 (281)
Q Consensus 231 ~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~----~~~~~~~s~~~D-----g~v~iw~~ 277 (281)
.. ...+.... .|..+|++++|++ ++..++++|+.| ..+++|++
T Consensus 246 ~~----~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 246 IM----ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EE----EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EE----EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 10 00000001 2456799999964 444678888776 37889985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=223.82 Aligned_cols=211 Identities=12% Similarity=0.207 Sum_probs=163.6
Q ss_pred eeecCCCCCeeEEEEcC-CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEE
Q 023500 41 ATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKV 118 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~ 118 (281)
....+|...|+|++|+| ++++||+|+.||+|++||+..... .....+.+|...|++++|+| ++++|++++.|++|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34567899999999999 577999999999999999875543 23445678999999999999 5789999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 198 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
||++... ...+. ....+...+.+++|+|++.+|++|+.||.|++||++.... ..+ ..|..
T Consensus 192 wd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~------------~~~-~~h~~ 251 (435)
T 4e54_B 192 QDFKGNI------LRVFA-SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL------------WNL-RMHKK 251 (435)
T ss_dssp EETTSCE------EEEEE-CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC------------CCS-BCCSS
T ss_pred eeccCCc------eeEEe-ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee------------EEE-ecccc
Confidence 9986431 12221 1223455678999999999999999999999999863221 111 23778
Q ss_pred ceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 199 TIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 199 ~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.|.+++|+|++ ++++++.|+.+++|+....... ..+.....|..+|++++|+|++. +|++++.||.|+|||
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd 324 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYS 324 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEE
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEE
Confidence 89999999864 6888999999999987543211 11223357899999999999876 578999999999999
Q ss_pred ccc
Q 023500 277 LAN 279 (281)
Q Consensus 277 ~~~ 279 (281)
+..
T Consensus 325 ~~~ 327 (435)
T 4e54_B 325 ASQ 327 (435)
T ss_dssp SSS
T ss_pred CCC
Confidence 864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-30 Score=217.19 Aligned_cols=261 Identities=14% Similarity=0.079 Sum_probs=185.8
Q ss_pred CccceeEEEEcCCCCEE-EEeeCCCcEEEEecC--CCceeeeeeec--CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLL-ATASFDATTCIWEDV--GGDYECVATLE--GHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~--~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|...|++++|+|++++| ++|+.|+.|+|||.. ++. ++..+. .|...|.+++|+|++++|++|+.|+.+++|++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 44579999999999996 899999999999987 543 344444 57789999999999999999999999999998
Q ss_pred cCCCeeE-EeEeecCCccceeEEEecCC---CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 77 MPGNEFE-CVSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~v~~v~~~p~---~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
....... +...+.+|...|++++|+|+ +.++++++.|++|++|++.... ++..+ ..+|...|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~---~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-----IVDKW---LFGHKHFVSSICCG 250 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-----CEEEE---CCCCSSCEEEEEEC
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-----eeeee---ecCCCCceEEEEEC
Confidence 7654322 33466789999999999999 8899999999999999986542 22221 34788999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcc-ccee------------EEeecccCcceEEEEeCCCc-eeeecC-CC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS-WRHL------------CTISGYHDRTIFSVHWSREG-IIASGA-AD 217 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d 217 (281)
++.+|++++.|+.|++||+..++......... .... ..........+..+.+++++ ++++++ .+
T Consensus 251 -d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 329 (450)
T 2vdu_B 251 -KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329 (450)
T ss_dssp -STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence 99999999999999999987543211000000 0000 00000124567888999876 555565 89
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC------CCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD------DGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~------Dg~v~iw~~~~ 279 (281)
+.+++|+.... .... .........| ..|.+++|+|+ ..+++.++. +..|++|.+..
T Consensus 330 ~~i~iw~~~~~---~~~~-l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 330 KCIIILEMSEK---QKGD-LALKQIITFP-YNVISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SEEEEEEECSS---STTC-EEEEEEEECS-SCEEEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CeEEEEEeccC---CCCc-eeeccEeccC-CceEEEEecCC-cEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999987110 0101 1222333455 78999999994 334444443 55689998653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-29 Score=215.75 Aligned_cols=250 Identities=11% Similarity=0.078 Sum_probs=183.5
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeec-------------------------------------
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLE------------------------------------- 44 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~------------------------------------- 44 (281)
..++.+++|+|+|++|+++ .++.|.+||..+++ ...+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4688999999999977665 57899999987665 11222222
Q ss_pred -----------------CCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEec--CCCeeEEeEeec--CCccceeEEEecC
Q 023500 45 -----------------GHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVM--PGNEFECVSVLQ--GHAQDVKMVQWHP 102 (281)
Q Consensus 45 -----------------~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~--~~~~~~~~~~~~--~~~~~v~~v~~~p 102 (281)
+|.+.|.+++|+|++++| ++++.|++|++|++. .+.. +..+. .|...|++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---LKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---EEEEEEEECSSCEEEEEECT
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---eeeeecccCCCCceEEEEcC
Confidence 344579999999999996 899999999999997 4443 23333 5667899999999
Q ss_pred CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC---CCEEEEeeCCCcEEEEeCCcccccc
Q 023500 103 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---GDKLVSCSDDLTIKIWGADITRMQS 179 (281)
Q Consensus 103 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~~w~~~~~~~~~ 179 (281)
++.+|++++.|+.+++|++....... .... ...+|...|.+++|+|+ +.+|++|+.|+.|++||+.....
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~-~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~-- 232 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEK-FTQE----PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI-- 232 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSS-CCCC----CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--
T ss_pred CCCEEEEEeCCCcEEEEecCCccccc-ccce----eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--
Confidence 99999999999999999886543211 0111 22368889999999999 88999999999999999764321
Q ss_pred CCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee------------------
Q 023500 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK------------------ 241 (281)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~------------------ 241 (281)
...+...|...|.+++|+...++++++.|+.+++|+....... ..+..
T Consensus 233 ---------~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 233 ---------VDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL-----STFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp ---------EEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEE-----EEEECHHHHGGGCCTTSBC----
T ss_pred ---------eeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEe-----eeecchhhhhhhhhhcccccccc
Confidence 2222234778899999993347889999999999987643211 11100
Q ss_pred ---eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 242 ---KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 242 ---~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
....+...|.+++|+|+++.+++++..|+.|+||++
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 001334578999999988765544448999999998
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-30 Score=212.78 Aligned_cols=218 Identities=26% Similarity=0.414 Sum_probs=172.7
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTI 116 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v 116 (281)
++..+.+|.+.|++++|+|++++|++|+.|+.|++|++... .......+.+|...|++++|+|+ ++++++++.|+.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 35577899999999999999999999999999999999643 33556778899999999999987 8999999999999
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
++|++.... ...... ..+|...|.+++|+|+ +.+|++++.|+.|++||+...... .... ..
T Consensus 82 ~iwd~~~~~---~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------~~~~-~~ 144 (379)
T 3jrp_A 82 LIWKEENGR---WSQIAV----HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SPII-ID 144 (379)
T ss_dssp EEEEEETTE---EEEEEE----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------CEEE-EE
T ss_pred EEEEcCCCc---eeEeee----ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------eeEE-ec
Confidence 999886542 112222 2368889999999999 899999999999999998643211 1111 22
Q ss_pred ccCcceEEEEeCC--------------CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC-
Q 023500 195 YHDRTIFSVHWSR--------------EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE- 259 (281)
Q Consensus 195 ~~~~~v~~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 259 (281)
.|...+.++.|+| ...+++++.|+.+++|+..... ...........|..+|++++|+|++
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-----cceeeEEEEecccCcEeEEEECCCCC
Confidence 4678899999998 4578999999999999775421 1122334556899999999999983
Q ss_pred -CeeEEEeCCCCeEEEEEccc
Q 023500 260 -RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 260 -~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+|++++.||.|+|||+..
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESS
T ss_pred CCCeEEEEeCCCEEEEEeCCC
Confidence 46788999999999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-29 Score=210.43 Aligned_cols=242 Identities=22% Similarity=0.392 Sum_probs=185.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.++.++|+++ ++||+|. |++|+|||..+++...+..+.+|...|++|+|+|+|++|++|+.|++|++||+..++ +
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---R 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---E
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---E
Confidence 3567999975 5787765 999999999888765555667888999999999999999999999999999997653 5
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
+..+.+|...+.++.++ +..+++|+.|+.+++|+...... .+..+ .+|...+..+.|+|++.++++++.|
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~----~~~~~----~~h~~~~~~~~~~~~g~~l~s~~~D 251 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH----HVATL----SGHSQEVCGLRWAPDGRHLASGGND 251 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC----EEEEE----ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce----eeEEe----cccccceeeeeecCCCCeeeeeecc
Confidence 67788999999988775 46899999999999998765421 22222 3788999999999999999999999
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eee--ecCCCCcEEEEecccCCCcCCccceeee
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIA--SGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.+++|+........ ..... ...+...|.++.|++.+ +++ +|+.|+.+++|+..... ..
T Consensus 252 ~~v~i~~~~~~~~~~-------~~~~~-~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~---------~~ 314 (420)
T 4gga_A 252 NLVNVWPSAPGEGGW-------VPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---------CL 314 (420)
T ss_dssp SCEEEEESSCCSSCS-------CCSEE-ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE---------EE
T ss_pred ccceEEeeccccccc-------eeeee-ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc---------cc
Confidence 999999986432211 11111 22467889999998753 443 45689999999775421 12
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEE-eCCCCeEEEEEccc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLAS-ASDDGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s-~~~Dg~v~iw~~~~ 279 (281)
.... +...+.++.|+|++..++++ |..|+.|+|||+..
T Consensus 315 ~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 315 SAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp EEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred eeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 2222 33578999999998776654 44799999999865
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-30 Score=218.55 Aligned_cols=251 Identities=15% Similarity=0.296 Sum_probs=177.9
Q ss_pred cceeEEEEcCCC--CEEEEeeCCCcEEEEecCCCcee-------------------------------------eeee-e
Q 023500 4 RTVRSCAWSPSG--KLLATASFDATTCIWEDVGGDYE-------------------------------------CVAT-L 43 (281)
Q Consensus 4 ~~i~~~~~~~~~--~~l~tg~~d~~i~lw~~~~~~~~-------------------------------------~~~~-~ 43 (281)
..|++++|+|++ .+|++++.|+.|++|+...+... +... .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 779999999998 79999999999999997543221 0112 3
Q ss_pred cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeE-------eecCCccceeEEEecCCC-CeEEEEecCCe
Q 023500 44 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS-------VLQGHAQDVKMVQWHPTM-DVLFSCSYDNT 115 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~-------~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~ 115 (281)
.+|...|.+++|+|++++|++| .|+.|++||+.... .... .+.+|...|.+++|+|++ +++++++.|++
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 6899999999999999999998 79999999986332 2222 356899999999999998 89999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCcc------------ccEEEEEEccCCCEEEEeeCCCcEEEEeCCc-cccccCCC
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHS------------STIWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDG 182 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~-~~~~~~~~ 182 (281)
|++|++........ .+..+ .+|. ..|.+++|+|++++|++++. +.|++||+.. ..+.
T Consensus 251 i~iwd~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---- 320 (447)
T 3dw8_B 251 IRLCDMRASALCDR-HSKLF----EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---- 320 (447)
T ss_dssp EEEEETTTCSSSCT-TCEEE----CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS----
T ss_pred EEEEECcCCccccc-eeeEe----ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc----
Confidence 99999876532100 01111 2343 38999999999999999998 9999999864 2211
Q ss_pred CcccceeEEeecccCc---------------ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcC---Cc---------
Q 023500 183 YASWRHLCTISGYHDR---------------TIFSVHWSREG-IIASGAADDSVQFFVESKDDLID---GP--------- 234 (281)
Q Consensus 183 ~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~---~~--------- 234 (281)
..+.. |.. .+..++|++++ ++++++.|+.+++|+........ ..
T Consensus 321 -------~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 321 -------ETYQV-HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp -------CCEES-CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred -------ceeec-cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence 01111 111 13348889876 68899999999999876532210 00
Q ss_pred -cc----------eeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 235 -SY----------KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 235 -~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.. .........+...|..++|+|++. +||+++.|+ +.+|+-
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEEC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeecc
Confidence 00 000001123456799999999875 677787665 667763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-30 Score=225.79 Aligned_cols=246 Identities=16% Similarity=0.295 Sum_probs=193.1
Q ss_pred Cccc-eeEEEEcC--CCCEEEEeeCCCcEEEEecCCC------ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----
Q 023500 2 HTRT-VRSCAWSP--SGKLLATASFDATTCIWEDVGG------DYECVATLEGHENEVKSVSWNASGTLLATCGRD---- 68 (281)
Q Consensus 2 h~~~-i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---- 68 (281)
|... |++++|+| ++++||+|+.|+.|++||..++ .......+.+|...|.+++|+|++++|++++.|
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 141 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 141 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence 6788 99999999 9999999999999999998654 445677888999999999999999999999988
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccc---
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS--- 144 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~--- 144 (281)
+.|++||. +. ....+.+|...|.+++|+|++. .+++++.|+.|++|+.... +.+..+ .+|..
T Consensus 142 ~~v~~~d~--~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----~~~~~~----~~~~~~~~ 207 (615)
T 1pgu_A 142 GVFISWDS--GN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----KFSASD----RTHHKQGS 207 (615)
T ss_dssp EEEEETTT--CC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----EEEEEE----CSSSCTTC
T ss_pred cEEEEEEC--CC---cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----ceeeee----cccCCCCc
Confidence 68888883 22 4567789999999999999998 7999999999999986543 233333 35777
Q ss_pred cEEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec---ccCcceEEEEeCCCceeeecCCCCcE
Q 023500 145 TIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREGIIASGAADDSV 220 (281)
Q Consensus 145 ~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~d~~~ 220 (281)
.|.+++|+|+ +++|++++.|+.|++||+...+. ...+.. .|...+.++.|+....+++++.|+.+
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i 276 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 276 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE-----------eEEecccccccCCceEEEEEcCCCEEEEEcCCCcE
Confidence 8999999999 99999999999999999864321 222212 47788999999944478889999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++|+..... ...........+...+.++.|. ++. ++++++.||.|++||+..
T Consensus 277 ~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 277 RVWDVTTSK-----CVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEETTTTE-----EEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTE
T ss_pred EEEECCCCc-----EEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCC
Confidence 999775321 1111111112234678888886 444 578999999999999764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=206.58 Aligned_cols=239 Identities=8% Similarity=0.018 Sum_probs=182.5
Q ss_pred CccceeEEEEcCCCC-EEEEeeCCCcEEEEec-CCCceeeeeeecC--CCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWED-VGGDYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~-~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
|...|++++|+|+++ +|++|+.|+.|++|+. .++. ...+.+ |...|.+++|+| +.+|++++.|+.|++||+.
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 678999999999999 9999999999999998 7664 356778 999999999999 9999999999999999987
Q ss_pred CCC--e----eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC-CCCCCceeeeeeeeccCCccccEEEEE
Q 023500 78 PGN--E----FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED-TDSDNWHCVQTISESNNGHSSTIWALS 150 (281)
Q Consensus 78 ~~~--~----~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (281)
... . ..++..+. |...+.+++|+|++ +++++.|+.|++|++.. .... .. .....|...+.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~---~~~~~~~~~i~~i~ 200 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GT---IEESGLKYQIRDVA 200 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CE---EEECSCSSCEEEEE
T ss_pred ccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ce---eeecCCCCceeEEE
Confidence 410 0 11233344 88889999999987 99999999999999876 3211 11 11235678899999
Q ss_pred Ecc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec--------ccCcceEEEEeCCCc-eeeecCCCCcE
Q 023500 151 FNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG--------YHDRTIFSVHWSREG-IIASGAADDSV 220 (281)
Q Consensus 151 ~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~-~~~~~~~d~~~ 220 (281)
|+| ++.++++++.||.+++|+.+....... ......+.. .+...+.+++|++++ ++++++.|+.+
T Consensus 201 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYN-----SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp ECSGGGCEEEEEETTSEEEEEECCTTCCSTT-----CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred ECCCCCCEEEEEecCCcEEEEEEcCCCcccc-----cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 999 999999999999999998865310000 011111211 123489999999876 68889999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCC-CCCeeEEEEcCCCCeeEEEeCCCCe
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
++|+.... ........| ..+|++++ |++. +|++++.||.
T Consensus 276 ~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~ 315 (342)
T 1yfq_A 276 SCWNLQTR---------KKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDT 315 (342)
T ss_dssp EEEETTTT---------EEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTH
T ss_pred EEEcCccH---------hHhhhhhcccCCCceEec--CCCC-eEEEEecCCc
Confidence 99977532 223345566 89999999 7765 6889999998
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=205.71 Aligned_cols=227 Identities=20% Similarity=0.401 Sum_probs=170.4
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-eeEEeEeecCCccceeEEEecC--CCCeEEEEecCCeEEE
Q 023500 42 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-EFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKV 118 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~v~~v~~~p--~~~~l~s~s~d~~v~~ 118 (281)
.+.+|.+.|++++|+|++++|++|+.|+.|++|++.... .......+.+|...|.+++|+| ++++|++++.|+.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 457899999999999999999999999999999997543 3345677789999999999999 5899999999999999
Q ss_pred EeCCCCCCCC----ceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcc-cceeEE
Q 023500 119 WWAEDTDSDN----WHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYAS-WRHLCT 191 (281)
Q Consensus 119 w~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~~~ 191 (281)
|+++...... ++.+.. ..+|...|.+++|+|+ +.+|++++.|+.|++||+............. ......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCT----LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEE----ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EecCCCcccccccCcceeee----ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9987643211 122222 2468899999999999 9999999999999999986543221100000 000001
Q ss_pred eecccCcceEEEEeCCC----ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC---eeEE
Q 023500 192 ISGYHDRTIFSVHWSRE----GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER---RLLA 264 (281)
Q Consensus 192 ~~~~~~~~v~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~ 264 (281)
....+...+.++.|+|+ ..+++++.++.+.++...... ........+|...|++++|+|++. .+|+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 11135677889999884 578888899888777543321 122344567999999999999863 5789
Q ss_pred EeCCCCeEEEEEccc
Q 023500 265 SASDDGMIKIWELAN 279 (281)
Q Consensus 265 s~~~Dg~v~iw~~~~ 279 (281)
+++.||.|++||+..
T Consensus 235 s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 235 TGCKDGRIRIFKITE 249 (351)
T ss_dssp EEETTSCEEEEEEEE
T ss_pred EEcCCCeEEEEeCCC
Confidence 999999999999875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=212.17 Aligned_cols=236 Identities=9% Similarity=0.036 Sum_probs=166.7
Q ss_pred EcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC------eeEE
Q 023500 11 WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN------EFEC 84 (281)
Q Consensus 11 ~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~------~~~~ 84 (281)
+.+++++|++|+.|+.|++||..+++. +..+. ...|.++.|+|+ +++++.|++|++|+..... ..+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~--~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKT--ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSC--EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcE--EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 345778999999999999999877653 33433 467888889988 9999999999999765210 1111
Q ss_pred e-EeecCCccceeEEEecC--CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 85 V-SVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 85 ~-~~~~~~~~~v~~v~~~p--~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+ ....+|...|.+++|+| +++++++++.|++|++|+++... +.... ...|...+.+++|+|++.+|++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~~~---~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----QYIVH---SAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----EEEEE---CCCSSCCCCEEEECTTSCEEEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEE---ecCCCCceEEEEECCCCCEEEEE
Confidence 2 22236778899999999 99999999999999999987543 21111 12355679999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.|++||++..... ...+...|..+|.+++|+|++. +++++ ++.+++|+.+...... .+
T Consensus 189 ~~dg~i~iwd~~~~~~~----------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~ 251 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQA----------SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL------AY 251 (343)
T ss_dssp CTTSCEEEEESSCTTSC----------CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB------SS
T ss_pred cCCCEEEEEECCCCCCC----------ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce------ee
Confidence 99999999998743211 0122223788999999999875 55555 6699999886542211 01
Q ss_pred eeccCCCCCee--EEEEcCCCCeeEEEeCC-CCeEEEEEccc
Q 023500 241 KKEKAHDMDVN--SVQWSPGERRLLASASD-DGMIKIWELAN 279 (281)
Q Consensus 241 ~~~~~h~~~v~--~~~~~~~~~~~~~s~~~-Dg~v~iw~~~~ 279 (281)
.....|..++. +++|+|+++. |++++. |+.++||++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSE-EEEEETTTTEEEEEEECT
T ss_pred cccccccccccceEEEECCCCCE-EEEecCCCCcEEEEEEcc
Confidence 11112333444 6999998864 666666 99999998743
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=217.60 Aligned_cols=236 Identities=14% Similarity=0.214 Sum_probs=171.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC-----CeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN-----EVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
|.+.|++++|+|+|++||+++.||.++||+..+ ++..+. |.. .|.+++|||+|++|++|+.||+|++|++
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 467899999999999999999999999998533 566667 665 5999999999999999999999999999
Q ss_pred cCCCe----eEEeEee----cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 77 MPGNE----FECVSVL----QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 77 ~~~~~----~~~~~~~----~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
..+.. +-.+.++ .+|...|.+++|+|++ +++++.|++|++|++...... ....++ ..+|+..|.+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--~~~~tL---~~~h~~~V~s 231 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--PVSRMI---QNASRRKITD 231 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--CCEEEE---ECCCSSCCCC
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--cceeee---cccccCcEEE
Confidence 76531 0123444 6788899999999998 889999999999988654310 001112 1368889999
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEe--CCCc-eeeecCCCCcEEEEec
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW--SREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~-~~~~~~~d~~~~~~~~ 225 (281)
++|+ +..|++++ +++|++||....+ .......|...+..+.+ ++++ .+++++.+|. ++|..
T Consensus 232 vaFs--g~~LASa~-~~tIkLWd~~~~~------------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 232 LKIV--DYKVVLTC-PGYVHKIDLKNYS------------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEE--TTEEEEEC-SSEEEEEETTTTE------------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEE--CCEEEEEe-CCeEEEEECCCCe------------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9999 57898887 6999999986432 11222247888999999 8887 5677777888 88875
Q ss_pred c-----cCCCcC----------CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 226 S-----KDDLID----------GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 226 ~-----~~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
. .+.... ...... +. ...+...|.+++|+|+|+ ++|+++.
T Consensus 296 d~~~~spd~~l~a~~d~~v~lW~~~g~~-l~-~~~~~~~I~~va~SPdG~-~lA~~~~ 350 (588)
T 2j04_A 296 DELHVTADNIIAPYLEKKFKKWSTIWNE-FN-NYETTLVIHGISLSPDGY-SIAIVYD 350 (588)
T ss_dssp SSEEEECCCSSHHHHHHHHHHTTTTTTS-SS-SSCCEEEEEEEEECTTSS-EEEEEEE
T ss_pred ccEEECCCceEEEEcCCEEEEEECCCCc-ee-eeccceEEEEEEECCCCC-EEEEEEe
Confidence 2 111100 000000 11 112244589999999985 5777653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=207.94 Aligned_cols=235 Identities=28% Similarity=0.569 Sum_probs=183.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+ ++++++|+.|+.|++||..+++ ++..+.+|...|.++.|+ +..+++|+.|++|++||+..+.
T Consensus 158 h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~- 230 (445)
T 2ovr_B 158 HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ- 230 (445)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-
T ss_pred CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc--EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-
Confidence 77889999997 6799999999999999987764 567788999999999985 5789999999999999987654
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+...+.+|...|.++.| ++..+++++.|+.|++|++... +++..+ .+|...|.++.| ++.+++++
T Consensus 231 --~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~----~~~~~~v~~~~~--~~~~l~~~ 295 (445)
T 2ovr_B 231 --CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-----TCLHTL----QGHTNRVYSLQF--DGIHVVSG 295 (445)
T ss_dssp --EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-----EEEEEE----CCCSSCEEEEEE--CSSEEEEE
T ss_pred --EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-----cEeEEe----cCCCCceEEEEE--CCCEEEEE
Confidence 35667789999999998 6778999999999999987653 223333 368889999999 67899999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+.|++||....+. ...+. .|...+.++.++ +..+++++.|+.+++|+..... .. ..+.
T Consensus 296 ~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~-----~~-~~~~ 356 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQ-----CL-QTLQ 356 (445)
T ss_dssp ETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCC-----EE-EEEC
T ss_pred eCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCc-----EE-EEEc
Confidence 9999999999864321 22222 356677788775 4588899999999999775421 11 1122
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
....|...|++++|++ .++++++.||.|++||+...
T Consensus 357 ~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp STTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCC
Confidence 2335889999999974 36889999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=206.92 Aligned_cols=232 Identities=24% Similarity=0.504 Sum_probs=184.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|.. +++++|++|++|+.||.|++||..+++ ++..+.+|.+.|.+++|+ +.++++|+.|++|++||+..++
T Consensus 117 h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~- 190 (445)
T 2ovr_B 117 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE- 190 (445)
T ss_dssp STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC--EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-
T ss_pred cCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc--EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-
Confidence 5555433 355679999999999999999987764 467888999999999997 5799999999999999997653
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+.+|...|.++.|++ +.+++++.|++|++|++.... .+..+ .+|...|.+++| ++.++++|
T Consensus 191 --~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~-----~~~~~----~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 191 --CIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQ-----CLHVL----MGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp --EEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCC-----EEEEE----ECCSSCEEEEEE--CSSCEEEE
T ss_pred --EEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCc-----EEEEE----cCCcccEEEEEE--CCCEEEEE
Confidence 4677889999999999964 679999999999999887542 23333 368889999999 67799999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
+.|+.|++||.+... ....+. .|...+.++.+ ....+++++.|+.+++|+.... ....
T Consensus 256 ~~dg~i~iwd~~~~~-----------~~~~~~-~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~---------~~~~ 313 (445)
T 2ovr_B 256 AYDFMVKVWDPETET-----------CLHTLQ-GHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETG---------NCIH 313 (445)
T ss_dssp ETTSCEEEEEGGGTE-----------EEEEEC-CCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTC---------CEEE
T ss_pred cCCCEEEEEECCCCc-----------EeEEec-CCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCC---------CEEE
Confidence 999999999976432 122222 46788999998 5567899999999999977542 1233
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....|...+.++.+++ . ++++++.||.|++||+..
T Consensus 314 ~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp EECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTT
T ss_pred EEcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCC
Confidence 4457888899988864 3 678999999999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=202.56 Aligned_cols=257 Identities=15% Similarity=0.181 Sum_probs=171.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~ 80 (281)
|...|++++|+|||++||+|+.|+ ++||+..+... .... +...+..+++.++++.+ ++++.|++|++||+..++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH--IMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE--EEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce--eeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 778999999999999999998775 78999765432 2222 22357889999988876 678888999999987654
Q ss_pred eeEEeEeecCCccceeEEEecCCCC-----------------------------------eEEE--EecCCeEEEEeCCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMD-----------------------------------VLFS--CSYDNTIKVWWAED 123 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~-----------------------------------~l~s--~s~d~~v~~w~~~~ 123 (281)
. +..+. +...|.+++++|+.. .++. ++.||.|++|++..
T Consensus 93 ~---~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 93 D---VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp E---EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC
T ss_pred E---EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCC
Confidence 3 33333 455788888877531 2222 35556666665543
Q ss_pred CCCCC---ce----eeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCc-EEEEeCCccccccCCCCcccceeEEee-c
Q 023500 124 TDSDN---WH----CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT-IKIWGADITRMQSGDGYASWRHLCTIS-G 194 (281)
Q Consensus 124 ~~~~~---~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (281)
..... .. ..........+|...|.+++|+|++++|++|+.|++ |++||+..++ ....+. +
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-----------~~~~~~~g 237 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-----------LVREFRRG 237 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-----------EEEEEECT
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-----------EEEEEEcC
Confidence 21000 00 000001223579999999999999999999999998 9999986432 233444 3
Q ss_pred ccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce--------------eeeeeccCCCCCeeEEEEcCCC
Q 023500 195 YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK--------------MLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 195 ~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
.|...|.+++|+|++ ++++++.|+.+++|+............. ........+..+...++|++++
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~ 317 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES 317 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC
Confidence 378899999999976 6888999999999988643211100000 0001111223345779999987
Q ss_pred CeeEEEeCCCCeEEEEEccc
Q 023500 260 RRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 260 ~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .+++++.||.+++|++..
T Consensus 318 ~-~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 318 S-LVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp E-EEEEETTTTEEEEEEEEE
T ss_pred C-EEEEEeCCCeEEEEEEEc
Confidence 5 577888899999999754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=209.73 Aligned_cols=220 Identities=23% Similarity=0.401 Sum_probs=170.3
Q ss_pred eeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC-------CeeEEeEeecCCccceeEEEecCCCC-eEEEEe
Q 023500 41 ATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG-------NEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCS 111 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~-------~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s 111 (281)
....+|.+.|++++|+|+ +.+|++++.|+.|++|++... ........+.+|...+.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999751 11234567789999999999999988 999999
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc-CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeE
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC 190 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 190 (281)
.|++|++|++........ .........+|...|.+++|+| ++.+|++++.|+.|++||++..... +...
T Consensus 202 ~dg~i~vwd~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--------~~~~ 271 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHR--VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--------KPSH 271 (430)
T ss_dssp TTSCEEEEETTSCCBGGG--EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------SCSE
T ss_pred CCCeEEEEeCCCCCCCCc--eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------ccee
Confidence 999999999876322111 1111122247889999999999 6779999999999999998743210 1112
Q ss_pred EeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 191 TISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.+ ..|...+.+++|++++ ++++++.|+.+++|+..... ........|...|++++|+|+++.+|++++.
T Consensus 272 ~~-~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 272 TV-DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp EE-ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred Ee-ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 22 2477889999999976 58899999999999875421 1122344688999999999998778999999
Q ss_pred CCeEEEEEccc
Q 023500 269 DGMIKIWELAN 279 (281)
Q Consensus 269 Dg~v~iw~~~~ 279 (281)
|+.|+|||+..
T Consensus 343 d~~i~iwd~~~ 353 (430)
T 2xyi_A 343 DRRLHVWDLSK 353 (430)
T ss_dssp TSCCEEEEGGG
T ss_pred CCcEEEEeCCC
Confidence 99999999875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=204.83 Aligned_cols=214 Identities=12% Similarity=0.214 Sum_probs=168.5
Q ss_pred eeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCCe
Q 023500 38 ECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNT 115 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~ 115 (281)
.....+.+|...|++++|+|++ ++|++|+.|+.|++||+...... ......+|...|.+++|+| ++.++++++.|+.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 4466788999999999999998 99999999999999999765532 2333347999999999999 6789999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
|++|++... ....+. ...+|...|.+++|+|++.+|++|+.|+.|++||++.. ....+. .
T Consensus 143 i~iwd~~~~------~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~-~ 202 (383)
T 3ei3_B 143 TTLRDFSGS------VIQVFA-KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH------------EIFKEK-L 202 (383)
T ss_dssp EEEEETTSC------EEEEEE-CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC------------EEEEEE-C
T ss_pred EEEEECCCC------ceEEEe-ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC------------EEEEec-c
Confidence 999998742 222222 22346688999999999999999999999999997421 122222 4
Q ss_pred cCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC-CCCeeEEEeCCCCeE
Q 023500 196 HDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMI 272 (281)
Q Consensus 196 ~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~s~~~Dg~v 272 (281)
|...+.+++|++++ ++++++.|+.+++|+....... ....... .|...|++++|+| ++. +|++++.|+.|
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~~d~~i 275 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-----NSYIAEM-PHEKPVNAAYFNPTDST-KLLTTDQRNEI 275 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-----TCEEEEE-ECSSCEEEEEECTTTSC-EEEEEESSSEE
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-----cceEEEe-cCCCceEEEEEcCCCCC-EEEEEcCCCcE
Confidence 78899999999986 6899999999999987642211 1112222 5889999999999 765 67899999999
Q ss_pred EEEEccc
Q 023500 273 KIWELAN 279 (281)
Q Consensus 273 ~iw~~~~ 279 (281)
++||+..
T Consensus 276 ~iwd~~~ 282 (383)
T 3ei3_B 276 RVYSSYD 282 (383)
T ss_dssp EEEETTB
T ss_pred EEEECCC
Confidence 9999865
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-27 Score=197.67 Aligned_cols=221 Identities=21% Similarity=0.344 Sum_probs=170.2
Q ss_pred ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe
Q 023500 36 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115 (281)
Q Consensus 36 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~ 115 (281)
.......+.+|.+.|++++|+|++++|++++.|+.|++||+..+. .+..+.+|...|.+++|+|+++++++++.|+.
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 334456788999999999999999999999999999999987654 45678899999999999999999999999999
Q ss_pred EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC-----CcEEEEeCCccccccCCCCcccceeE
Q 023500 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-----LTIKIWGADITRMQSGDGYASWRHLC 190 (281)
Q Consensus 116 v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~ 190 (281)
|++|++.... ++..+. |...+.+++|+|++.+|++++.+ +.|++||...................
T Consensus 98 i~iwd~~~~~-----~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 98 IKLWDVSNGQ-----CVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp EEEEETTTCC-----EEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred EEEEECCCCc-----EEEEee-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 9999887542 233332 56789999999999999999999 99999987643321110000001111
Q ss_pred EeecccCc--ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 191 TISGYHDR--TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 191 ~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
... .+.. .+.+++|++++ .+++++.|+.+++|+.... .........|...|.+++|+|++. +|++++
T Consensus 168 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 237 (369)
T 3zwl_B 168 KII-THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--------YEYVDSIDLHEKSISDMQFSPDLT-YFITSS 237 (369)
T ss_dssp EEE-CCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--------TEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred ecc-CCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--------cEeEEEEecCCCceeEEEECCCCC-EEEEec
Confidence 111 2333 88999999876 6788889999999977541 122334456889999999999875 578999
Q ss_pred CCCeEEEEEccc
Q 023500 268 DDGMIKIWELAN 279 (281)
Q Consensus 268 ~Dg~v~iw~~~~ 279 (281)
.|+.|++||+..
T Consensus 238 ~d~~i~v~d~~~ 249 (369)
T 3zwl_B 238 RDTNSFLVDVST 249 (369)
T ss_dssp TTSEEEEEETTT
T ss_pred CCceEEEEECCC
Confidence 999999999865
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=199.68 Aligned_cols=258 Identities=21% Similarity=0.360 Sum_probs=166.8
Q ss_pred CccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC---CCEEEEecCCCcEEEEEec
Q 023500 2 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~~w~~~ 77 (281)
|...|++++|+| ++++|++++.|+.|++||..+++. ...+. +...+.++.|+|. +.++++++.|+.|++||+.
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE--EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc--ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 788999999999 778999999999999999887653 34444 7788999999884 4599999999999999997
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCce-------eeeeeeeccCCccccEEEE
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWH-------CVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~ 149 (281)
.+. ....+.+|...|.+++|+|++. ++++++.|+.|++|++......... ..........+|...|.++
T Consensus 175 ~~~---~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 175 SGS---CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSC---CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred Ccc---eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 654 3566788999999999999998 5899999999999998754311000 0001111124688999999
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCCC------------------------------------cccceeEEee
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY------------------------------------ASWRHLCTIS 193 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~------------------------------------~~~~~~~~~~ 193 (281)
+|+|++.+|++++.|+.|++||+........... ...+....+
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 9999999999999999999999875432211000 000112222
Q ss_pred cccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeE
Q 023500 194 GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272 (281)
Q Consensus 194 ~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v 272 (281)
..|...|.+++|++++ ++++++.|+.+++|+........ ....+ -....+.|.....+.+++.|+.+
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP---------DDDET---TTKSQLNPAFEDAWSSSDEEGGT 398 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC---------CCCce---EeccccccccceeecccCccCce
Confidence 2367889999999975 68889999999999876532211 01111 11123444334456678889999
Q ss_pred EEEEcc
Q 023500 273 KIWELA 278 (281)
Q Consensus 273 ~iw~~~ 278 (281)
++|+..
T Consensus 399 ~~W~~~ 404 (408)
T 4a11_B 399 SAWSHP 404 (408)
T ss_dssp ------
T ss_pred eecCCc
Confidence 999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=220.32 Aligned_cols=216 Identities=26% Similarity=0.414 Sum_probs=169.5
Q ss_pred eeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCC--CCeEEEEecCCeEEE
Q 023500 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKV 118 (281)
Q Consensus 41 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~l~s~s~d~~v~~ 118 (281)
..+.+|.+.|++++|+|++++|++|+.||+|++|++... .......+.+|...|++++|+|+ ++++++|+.||+|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 456899999999999999999999999999999998743 34566788899999999999988 899999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC--CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
|++.... ...... ..+|...|.+++|+|+ +..+++|+.||.|++||+...... .... ...|
T Consensus 82 wd~~~~~---~~~~~~----~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~~~-~~~~ 144 (753)
T 3jro_A 82 WKEENGR---WSQIAV----HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SPII-IDAH 144 (753)
T ss_dssp EEEETTE---EEEEEE----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CCEE-EECC
T ss_pred EECCCCc---cccccc----ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ceeE-eecC
Confidence 9886532 112222 2468899999999999 999999999999999998643211 0111 2246
Q ss_pred CcceEEEEeCC--------------CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC--C
Q 023500 197 DRTIFSVHWSR--------------EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE--R 260 (281)
Q Consensus 197 ~~~v~~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~ 260 (281)
...+.++.|+| ...+++++.|+.+++|+..... ...........|..+|++++|+|++ .
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----ccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 78899999998 4578999999999999876431 1122334556899999999999983 4
Q ss_pred eeEEEeCCCCeEEEEEccc
Q 023500 261 RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 261 ~~~~s~~~Dg~v~iw~~~~ 279 (281)
.++++++.||.|++||+..
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEEEESSSCEEEEEESS
T ss_pred CEEEEEecCCEEEEecCCC
Confidence 5788999999999999875
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=192.13 Aligned_cols=234 Identities=11% Similarity=0.131 Sum_probs=152.9
Q ss_pred EEEeeCCCcEEEEecCCC-ceeeeeeecCCCCC-------------------------eeEEEEcCC----CCEEEEecC
Q 023500 18 LATASFDATTCIWEDVGG-DYECVATLEGHENE-------------------------VKSVSWNAS----GTLLATCGR 67 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~-~~~~~~~~~~h~~~-------------------------v~~v~~~~~----~~~l~s~~~ 67 (281)
++++++ ..|+||++... ++++++++..|..+ |+.++|+|+ ++.++++|.
T Consensus 57 ~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~ 135 (356)
T 2w18_A 57 IITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN 135 (356)
T ss_dssp EEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred EEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence 556664 46999998664 45778888887764 456666777 667776553
Q ss_pred --------------------CCcEEEEEecCCCeeEEeEeecCCccceeEEEecC---CCCeEEEEecCCeEEEEeCCCC
Q 023500 68 --------------------DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 68 --------------------d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
|+.|++|++.+... .+..+.+|...++.++|+| ++..|++++.|++|++||+.+.
T Consensus 136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred eEEEEecCCCcEEEecccCCCCcEEEEEECCCCc--eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 88888888854332 3455668888899999999 6689999999999999998765
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEE------------EEeeCCCcEEEEeCCccccccCCCCcccceeEEe
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL------------VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 192 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l------------~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 192 (281)
. ++.++.. ...+...+.+++|+|++.++ ++|+.|+++++||.+.++... .....+
T Consensus 214 k-----~l~tL~g-~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~-------v~~~~~ 280 (356)
T 2w18_A 214 Q-----LLKKMHI-DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG-------VMLYCL 280 (356)
T ss_dssp C-----EEEEEEC-CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE-------EEEECC
T ss_pred c-----EEEEEcC-CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE-------EEEeec
Confidence 3 4444431 11123467788999999876 668889999999987543210 000001
Q ss_pred ecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCee-EEEEcCCCCeeEEEeCCCCe
Q 023500 193 SGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN-SVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~s~~~Dg~ 271 (281)
...|...+.+..++ ...+++++.|+++++|+.... .......+|...+. .++|+|+++ +|++|+.|++
T Consensus 281 p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~T 349 (356)
T 2w18_A 281 PPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGN 349 (356)
T ss_dssp CTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSSS-EEEEECTTSC
T ss_pred cCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCc
Confidence 11232233333333 346788889999999977543 22334456766655 589999886 5789999999
Q ss_pred EEEEEcc
Q 023500 272 IKIWELA 278 (281)
Q Consensus 272 v~iw~~~ 278 (281)
|||||+.
T Consensus 350 IklWd~~ 356 (356)
T 2w18_A 350 IFVYHYS 356 (356)
T ss_dssp EEEEEEC
T ss_pred EEEecCC
Confidence 9999963
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=193.03 Aligned_cols=224 Identities=18% Similarity=0.250 Sum_probs=158.1
Q ss_pred eeeeeecCCCCCeeEEEEcCC---CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC
Q 023500 38 ECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
..+..+.+|.+.|++++|+|+ |++|++|+.|+.|++|++..... .....+.+|...|++++|+|+++++++++.|+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 356678899999999999998 69999999999999999976332 23356778999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE--ccCCCEEEEeeCCCcEEEEeCCccccccCCCCccc-c----
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW-R---- 187 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~-~---- 187 (281)
.|++|+++... ... + .+|...|.+++| +|++.+|++++.|+.|++||+...++......... .
T Consensus 109 ~v~iwd~~~~~-----~~~-~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 3mmy_A 109 TAKMWDLSSNQ-----AIQ-I----AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADV 178 (368)
T ss_dssp EEEEEETTTTE-----EEE-E----EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEE
T ss_pred cEEEEEcCCCC-----cee-e----ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEe
Confidence 99999887542 222 2 258889999999 88999999999999999999865432111000000 0
Q ss_pred ------------------------eeEEeecccCcceEEEEeCCC-----ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 188 ------------------------HLCTISGYHDRTIFSVHWSRE-----GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 188 ------------------------~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
..............++.+.+. ..+++++.|+.+++|+....... .
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------~ 252 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA------K 252 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH------H
T ss_pred cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc------c
Confidence 000000001122223322211 12888999999999987543110 0
Q ss_pred eeeeccCCC------------CCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 239 LLKKEKAHD------------MDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 239 ~~~~~~~h~------------~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|. .+|++++|+|++. +|++++.||.|++||+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTT
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCC
Confidence 111122333 3799999999875 678999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-25 Score=185.23 Aligned_cols=236 Identities=12% Similarity=0.157 Sum_probs=173.5
Q ss_pred cceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCe
Q 023500 4 RTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~ 81 (281)
..+.+++|+|+|+++ ++++.|+.|++||..+++. +..+..+ ..+.+++|+|++++|+ +++.|+.|++||+..++.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~--~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--EEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence 458999999999976 7788999999999877653 4555544 4899999999999875 566789999999976543
Q ss_pred eEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE-E
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-V 159 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~ 159 (281)
+..+..+ ..+.+++|+|+++.+ ++++.|+.|++|++.... .+..+. .+ ..+.+++|+|+++.| +
T Consensus 109 ---~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~----~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 109 ---AGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTVS----VG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp ---EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE----CC-SSEEEEEECTTSSEEEE
T ss_pred ---EEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEe----cC-CCcceEEECCCCCEEEE
Confidence 3334433 468999999999976 788889999999886532 222222 22 446899999999877 6
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecC---CCCcEEEEecccCCCcCCcc
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA---ADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~---~d~~~~~~~~~~~~~~~~~~ 235 (281)
+++.|+.|++||...... ..... +...+.++.+++++ .+++++ .++.+++|+.....
T Consensus 175 ~~~~~~~v~~~d~~~~~~-----------~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~------ 235 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTNSV-----------IDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ 235 (391)
T ss_dssp EETTTTEEEEEETTTTEE-----------EEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------
T ss_pred EeCCCCEEEEEECCCCeE-----------EEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe------
Confidence 778899999999864321 11111 34567888999877 455554 68999999765321
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|. .+.+++|+|+++.++++++.|+.|++||+..
T Consensus 236 ---~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 236 ---ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp ---EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ---EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 122222343 5789999999887778999999999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=186.65 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=158.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCC-------ceeeeeee-cCCCCCeeEEEEcC--CCCEEEEecCCCcEEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG-------DYECVATL-EGHENEVKSVSWNA--SGTLLATCGRDKSVWI 73 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~-------~~~~~~~~-~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~~ 73 (281)
..|.++.|+|+ +++|+.|+.+++|+.... ....+..+ .+|.+.|.+++|+| +++++++++.|++|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778887 899999999999975421 11112222 36778999999999 9999999999999999
Q ss_pred EEecCCCeeEEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 74 WEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 74 w~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
||+..+.. .... ..|...+.+++|+|++.++++|+.|+.|++||+...... ...+. .+|...|.+++|+
T Consensus 154 wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~---~~h~~~v~~l~fs 223 (343)
T 3lrv_A 154 QSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFP---VDEEAKIKEVKFA 223 (343)
T ss_dssp EESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECC---CCTTSCEEEEEEC
T ss_pred EECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEe---ccCCCCEEEEEEe
Confidence 99976653 3333 345567999999999999999999999999998765311 01221 1388999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcce--EEEEeCCCc-eeeecCC-CCcEEEEecccC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI--FSVHWSREG-IIASGAA-DDSVQFFVESKD 228 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~-~~~~~~~-d~~~~~~~~~~~ 228 (281)
|++.+|++++ |+.|++||++....... ... +. .+...+ .+++|+|++ ++++++. |+.+++|+....
T Consensus 224 ~~g~~l~s~~-~~~v~iwd~~~~~~~~~-----~~~---~~-~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 224 DNGYWMVVEC-DQTVVCFDLRKDVGTLA-----YPT---YT-IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp TTSSEEEEEE-SSBEEEEETTSSTTCBS-----SCC---CB-C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCCCEEEEEe-CCeEEEEEcCCCCccee-----ecc---cc-cccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 9999999999 55999999875432110 000 00 011122 468999877 4555555 999999977432
Q ss_pred CCcCCccceeeeeeccCCCCCeeEEEEcC---CCCeeEEEeCCCCeEEEEE
Q 023500 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWSP---GERRLLASASDDGMIKIWE 276 (281)
Q Consensus 229 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~s~~~Dg~v~iw~ 276 (281)
.. ... . .++..+.|.| +.. .+++++.||.++++-
T Consensus 294 ~~----~~~-~--------~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 294 TK----NWT-K--------DEESALCLQSDTADFT-DMDVVCGDGGIAAIL 330 (343)
T ss_dssp TC----SEE-E--------EEEEECCC----CCCC-EEEEEEETTEEEEEE
T ss_pred cc----ceE-e--------cCceeEecCccccccc-eeEEEecCCceEEEE
Confidence 10 111 0 3355566665 443 345566666666553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-25 Score=186.30 Aligned_cols=239 Identities=11% Similarity=0.052 Sum_probs=177.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~ 80 (281)
|...|++++|+|+++++++++.|+.|++||..+++ .+..+..|...+.+++|+|+++++ ++++.|+.|++||+..+.
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 56789999999999999999999999999987664 356667889999999999999987 556689999999987553
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEe--------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCS--------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s--------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
....+..+ ..+.+++|+|+++.+++++ .|+.|++|++.... ....+ .|...+.+++|+
T Consensus 246 ---~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~-----~~~~~~~~~~~~ 311 (433)
T 3bws_A 246 ---EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDTI-----GPPGNKRHIVSG 311 (433)
T ss_dssp ---EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEEE-----EEEECEEEEEEC
T ss_pred ---EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEeec-----cCCCCcceEEEC
Confidence 33444443 4589999999999998888 48899999886542 22222 345678899999
Q ss_pred cCCC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCC--------------
Q 023500 153 AKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA-------------- 216 (281)
Q Consensus 153 ~~~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~-------------- 216 (281)
|+++ .+++++.|+.+++||.+..+. ...+. +...+.++++++++ .+++++.
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~~-----------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKKV-----------QKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTEE-----------EEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred CCCCEEEEEecCCCEEEEEECCCCcE-----------EEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 9997 456778999999999864321 11222 45667889999877 3444443
Q ss_pred -CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 217 -DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 217 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|+.+++|+..... ....... ...+.+++|+|+++.++++++.|+.|++|++..
T Consensus 379 ~dg~v~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDT---------VKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTE---------EEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCc---------EEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5689999764321 1111222 356899999999876665666799999999863
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=181.02 Aligned_cols=203 Identities=25% Similarity=0.442 Sum_probs=157.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce---------------------------------------eeeee
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY---------------------------------------ECVAT 42 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~---------------------------------------~~~~~ 42 (281)
|...|++++|+|++++||+|+.|+.|+||+..+++. ..+..
T Consensus 66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 4ggc_A 66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVAT 145 (318)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEE
Confidence 567899999999999999999999999999765431 11234
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEecCCCCe---EEEEecCCeEEE
Q 023500 43 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDV---LFSCSYDNTIKV 118 (281)
Q Consensus 43 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~---l~s~s~d~~v~~ 118 (281)
+.+|...+.++.|++++++|++++.|++|++||+..++. .........|...|.++.++|.+.. +++++.+++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 567888899999999999999999999999999976542 1223445667788999999998763 346778899999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe--eCCCcEEEEeCCccccccCCCCcccceeEEeeccc
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC--SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH 196 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (281)
|+..... ..... .+...+..+.|+|++..++++ +.|+.|++||....+ .+..+. .|
T Consensus 226 wd~~~~~-----~~~~~-----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-----------~~~~l~-gH 283 (318)
T 4ggc_A 226 WNVCSGA-----CLSAV-----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-----------KVAELK-GH 283 (318)
T ss_dssp EETTTCC-----EEEEE-----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-----------EEEEEC-CC
T ss_pred Eeccccc-----ccccc-----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-----------EEEEEc-CC
Confidence 9876542 11111 245678899999999877765 479999999986432 233333 48
Q ss_pred CcceEEEEeCCCc-eeeecCCCCcEEEEecc
Q 023500 197 DRTIFSVHWSREG-IIASGAADDSVQFFVES 226 (281)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~ 226 (281)
...|.+++|+|++ ++++++.|+++++|++.
T Consensus 284 ~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 8999999999976 68899999999999664
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-25 Score=186.28 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=179.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeee---eecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA---TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
..+.+++|+|+++++++++.|+.|++||..+++..... .+.+|.+.|.+++|+|++.++++++.|+.|++||+....
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 34668999998888999999999999998876543211 445899999999999999999999999999999987554
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.+..+..|...+.+++|+|++..++ +++.|+.|++|++.... .+..+. +...+.+++|+|+++.++
T Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-----~~~~~~-----~~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 203 ---YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-----EIRKTD-----KIGLPRGLLLSKDGKELY 269 (433)
T ss_dssp ---EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-----EEEECC-----CCSEEEEEEECTTSSEEE
T ss_pred ---EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-----EEEEec-----CCCCceEEEEcCCCCEEE
Confidence 3455667888899999999999775 55589999999886532 222221 234589999999999998
Q ss_pred Eee--------CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCC
Q 023500 160 SCS--------DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 160 s~~--------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~ 229 (281)
+++ .|+.|++||....+. .... .+...+..+.|++++ ++++++.++.+++|+.....
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~-----------~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKL-----------IDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEE-----------EEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCCccccCCCeEEEEECCCCcE-----------Eeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 887 588999999864321 1111 133467788999877 45777899999999775321
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC--------------CCeEEEEEccc
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD--------------DGMIKIWELAN 279 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~--------------Dg~v~iw~~~~ 279 (281)
..... .+...+.+++|+|+++.+++++.. ||.|++||+..
T Consensus 337 ---------~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 337 ---------VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp ---------EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred ---------EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 11111 256779999999998765544443 67999999854
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=180.13 Aligned_cols=201 Identities=14% Similarity=0.097 Sum_probs=138.4
Q ss_pred CccceeEEEEcCC----CCEEEEeeC--------------------CCcEEEEecCC-CceeeeeeecCCCCCeeEEEEc
Q 023500 2 HTRTVRSCAWSPS----GKLLATASF--------------------DATTCIWEDVG-GDYECVATLEGHENEVKSVSWN 56 (281)
Q Consensus 2 h~~~i~~~~~~~~----~~~l~tg~~--------------------d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~ 56 (281)
|.+.|+.++|+|+ ++++++++. |+.|++|+... ++ .+..+.+|...+..++|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMPPEETILTFA 187 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCc--eeeeeccCCCceeeEEee
Confidence 4567889999999 888887664 77888888733 33 355666788888888888
Q ss_pred C---CCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc---cceeEEEecCCCCeE------------EEEecCCeEEE
Q 023500 57 A---SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA---QDVKMVQWHPTMDVL------------FSCSYDNTIKV 118 (281)
Q Consensus 57 ~---~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~---~~v~~v~~~p~~~~l------------~s~s~d~~v~~ 118 (281)
| ++.+|++||.|++|++||+..++ ++.++.+|. ..+.+++|+|++.++ ++|+.|++|++
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk---~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQ---LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCC---EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCc---EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence 8 66899999999999999998775 455565543 467778999999876 67889999999
Q ss_pred EeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC
Q 023500 119 WWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
|+..... ++..+.. ...+|...+.+.++ ++..+++++.|++|++||+..++. ..++.+.++
T Consensus 265 Wd~~tgk-----~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-----------l~tL~gH~~ 326 (356)
T 2w18_A 265 INPKTTL-----SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC-----------TALLPPVSD 326 (356)
T ss_dssp EETTTTE-----EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE-----------EEEECCC--
T ss_pred EECCCCE-----EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE-----------EEEecCCCC
Confidence 9876542 2222211 12366555444444 377899999999999999875432 223333223
Q ss_pred cceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 198 RTIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 198 ~~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
..+.+++|+|++ ++++|+.|+++++|+.
T Consensus 327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 344568999987 6889999999999954
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=191.56 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=139.9
Q ss_pred CccceeEEEEcC--------CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEE
Q 023500 2 HTRTVRSCAWSP--------SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVW 72 (281)
Q Consensus 2 h~~~i~~~~~~~--------~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~ 72 (281)
|++.|++++|+| |+++||+|+.|++|+|||..++. ++..+.+|...|.+++|+|++ .+|++|+.|++|+
T Consensus 135 H~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 135 HHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp CSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 889999999998 88999999999999999986653 345666799999999999986 5799999999999
Q ss_pred EEEecCCCeeEE----------------------eEeecCCccceeEEEec-CCCCeEEEEecCCeEEEEeCCCCCCCCc
Q 023500 73 IWEVMPGNEFEC----------------------VSVLQGHAQDVKMVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNW 129 (281)
Q Consensus 73 ~w~~~~~~~~~~----------------------~~~~~~~~~~v~~v~~~-p~~~~l~s~s~d~~v~~w~~~~~~~~~~ 129 (281)
+||+..+..... .....+|...+.++.|. |++..+++++.|+++++|++........
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 999875532110 01234677889999986 7999999999999999999865421110
Q ss_pred ee-----eeeee-----eccCCccccEEEEEEcc--CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccC
Q 023500 130 HC-----VQTIS-----ESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197 (281)
Q Consensus 130 ~~-----~~~~~-----~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
.. +.... .....+.. .....|+| ++.++++|+.|++|++||...+.. .... ..+.
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-----------~~~~-~~~~ 359 (393)
T 4gq1_A 293 ISDSTMKLGPKNLLPNVQGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-----------NSIP-IQLG 359 (393)
T ss_dssp -----------CCSCSEEEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-----------CEEE-EECS
T ss_pred EeeecCccccEEEccccccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEe-cCCC
Confidence 00 00000 00001111 22334554 334677888999999999864321 1111 2367
Q ss_pred cceEEEEeCCCceeeecCCCCcEEEE
Q 023500 198 RTIFSVHWSREGIIASGAADDSVQFF 223 (281)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~d~~~~~~ 223 (281)
.+|.+++|+|+|.+++.++++.+.+|
T Consensus 360 ~~V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 360 MPIVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp SCEEEEEECTTSSEEEEEESSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 89999999999865555555556555
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=171.91 Aligned_cols=224 Identities=12% Similarity=0.143 Sum_probs=163.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
.++++++.|+.|++||..+++ ++..+.+| ..+.+++|+|+|++| ++++.|++|++||+..++ ....+..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~--~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~---~~~~~~~~~-~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK--VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATVPAGS-S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE--EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEEECSS-S
T ss_pred EEEEEcCCCCEEEEEECCCCe--EEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe---EEEEEECCC-C
Confidence 468899999999999987764 45566655 458999999999976 678899999999987554 334444444 7
Q ss_pred eeEEEecCCCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE-EEeeCCCcEEEEeC
Q 023500 95 VKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGA 172 (281)
Q Consensus 95 v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~ 172 (281)
+.+++|+|+++.++ +++.++.|++|++.... .+..+. +...+.+++|+|+++.| ++++.|+.|++||.
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-----VAGTVK-----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-----CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCe-----EEEEEe-----CCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 99999999999775 55567999999887542 222222 23467899999999877 78888999999998
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCc-e-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCe
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-I-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV 250 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 250 (281)
...+. ...+. ....+..+.|++++ . +++++.++.+++|+..... ..... .+...+
T Consensus 146 ~~~~~-----------~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~-~~~~~~ 202 (391)
T 1l0q_A 146 VTKAV-----------INTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTV-KVEAAP 202 (391)
T ss_dssp TTTEE-----------EEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEE-ECSSEE
T ss_pred CCCcE-----------EEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEEEE-ecCCCc
Confidence 64321 11222 23456888999877 3 4677889999999775421 11111 245678
Q ss_pred eEEEEcCCCCeeEEEeC--CCCeEEEEEccc
Q 023500 251 NSVQWSPGERRLLASAS--DDGMIKIWELAN 279 (281)
Q Consensus 251 ~~~~~~~~~~~~~~s~~--~Dg~v~iw~~~~ 279 (281)
.+++|+|+++.+++++. .|+.|++||+..
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 99999999876655554 689999999864
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=177.08 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=147.7
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-----------Ccee---eeeeecCCCCCeeEEEEcCCCCEEE----E
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVG-----------GDYE---CVATLEGHENEVKSVSWNASGTLLA----T 64 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-----------~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~----s 64 (281)
...++.+++++++.++++++.|+ +++|+... .... .... -.+...|.+++|+|+|++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999888 88876321 0000 0111 23567899999999999999 8
Q ss_pred ecCCCcEEEEEecCC--------CeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 65 CGRDKSVWIWEVMPG--------NEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 65 ~~~d~~v~~w~~~~~--------~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
|+.|++|++||+... +.......+.+|...|.+++|+|+ +.++++++.|++|++||+.... .....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~~~ 188 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-----KVCAT 188 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-----EEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-----ceeec
Confidence 999999999998643 222235667789999999999998 7899999999999999887541 12111
Q ss_pred eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 136 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
.+|...|.+++|+|++++|++|+.||.|++||.+. ..... ..........|...+.+++|++++.++++.
T Consensus 189 ----~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~-----~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 189 ----LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKV-----IPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp ----ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEE-----ECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred ----cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-ccccc-----ccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 25788999999999999999999999999999862 11100 000000000123478899999887655322
Q ss_pred --CCC------cEEEEeccc
Q 023500 216 --ADD------SVQFFVESK 227 (281)
Q Consensus 216 --~d~------~~~~~~~~~ 227 (281)
.++ .+++|+..+
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EETTCCSSSCCEEEEEECCC
T ss_pred ccCCCccCCCCceEEEEecc
Confidence 222 378887764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-23 Score=170.85 Aligned_cols=212 Identities=17% Similarity=0.241 Sum_probs=150.0
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC------------------------
Q 023500 5 TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG------------------------ 59 (281)
Q Consensus 5 ~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~------------------------ 59 (281)
.+..+++.++++++ ++|+.|+.|+|||..+++ ++..+. |...|.+++|+++.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCC
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEe
Confidence 46778899988877 578888999999987764 345555 66788888887753
Q ss_pred -----------CEEEE--ecCCCcEEEEEecCCCe------------eEE-eEeecCCccceeEEEecCCCCeEEEEecC
Q 023500 60 -----------TLLAT--CGRDKSVWIWEVMPGNE------------FEC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 60 -----------~~l~s--~~~d~~v~~w~~~~~~~------------~~~-~~~~~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
.+++. |+.|+.|++||+..+.. ..+ +..+.+|...|++++|+|++.+|++++.|
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 23333 67888999999875431 011 56788999999999999999999999999
Q ss_pred Ce-EEEEeCCCCCCCCceeeeeeeeccCC-ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCc-------
Q 023500 114 NT-IKVWWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA------- 184 (281)
Q Consensus 114 ~~-v~~w~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~------- 184 (281)
++ |++|++.... ++..+. .+ |...|.+++|+|++++|++++.|++|++||+..........+.
T Consensus 217 ~~~v~iwd~~~~~-----~~~~~~---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 217 GTIIRVFKTEDGV-----LVREFR---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp CSEEEEEETTTCC-----EEEEEE---CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred CCEEEEEECCCCc-----EEEEEE---cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 98 9999887542 333332 24 8899999999999999999999999999998643211100000
Q ss_pred ---ccce-eEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 185 ---SWRH-LCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 185 ---~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
.|.. ...+......+...++|++++ .+++++.|+.+++|+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0000 001111112234668899876 788888999999996643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-22 Score=162.57 Aligned_cols=260 Identities=12% Similarity=0.135 Sum_probs=170.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCC-CcEEEEecC--CCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD-ATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d-~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~ 77 (281)
|...+..++|+|+|++|++++.+ +.|.+|+.. +++...+..+..+. .+..++|+|+|++|++++ .++.|.+|++.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 34567889999999988888876 899999986 55555555555444 788999999999876655 58899999996
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeee--eeeeccCCccccEEEEEEccC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQ--TISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+........+..+ ..+.+++|+|+++.+++++ .++.|++|++..... ..... ... ......+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH--LVAQDPAEVT---TVEGAGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC--EEEEEEEEEE---CSTTCCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc--eeeecccccc---cCCCCCcceEEECCC
Confidence 33333344444433 4588999999999888777 899999999865211 11111 111 112246778999999
Q ss_pred CCEEEE-eeCCCcEEEEeCCccccccCCCCcccceeEEeecc--cCcceEEEEeCCCc-e-eeecCCCCcEEEEecccCC
Q 023500 155 GDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY--HDRTIFSVHWSREG-I-IASGAADDSVQFFVESKDD 229 (281)
Q Consensus 155 ~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~ 229 (281)
+++++. +..++.+.+|+.+...-. ............. ....+..+.|++++ . +++...++.+.+|+.....
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~ 264 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGN----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 264 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSC----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCc----EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence 986654 458899999998531100 0000011111110 12345678899887 3 3466678999999775211
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
... ........+.. +..++|+|+++.+++++..|+.|++|++.
T Consensus 265 ----~~~-~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 265 ----SVL-SKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ----CCE-EEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ----Cce-EEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 011 11222223333 88999999988777667689999999654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=160.89 Aligned_cols=257 Identities=10% Similarity=0.106 Sum_probs=169.5
Q ss_pred cceeEEEEcCCCCEEEEeeC--CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCC
Q 023500 4 RTVRSCAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~--d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~ 80 (281)
.....++|+|+|++++++.. ++.|.+|+..++....+..+..+...+..++|+|+|++|++++ .+++|.+|++....
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g 119 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG 119 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence 44667999999995544432 6899999987766555666566778889999999999888777 78999999996443
Q ss_pred eeEEeEeecC---------CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 81 EFECVSVLQG---------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 81 ~~~~~~~~~~---------~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
....+..+.. +...+.++.|+|+++++++...++.|++|++.... .......+.. .....+..++|
T Consensus 120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g--~~~~~~~~~~---~~g~~p~~~~~ 194 (347)
T 3hfq_A 120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG--QLSEQSVLTM---EAGFGPRHLVF 194 (347)
T ss_dssp CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS--CEEEEEEEEC---CTTCCEEEEEE
T ss_pred CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC--cEEEeeeEEc---CCCCCCceEEE
Confidence 3333333221 12347889999999977777778899999987321 1111111111 11235678999
Q ss_pred ccCCCEEEE-eeCCCcEEEEeCCccccccCCCCcccceeEEeeccc-----CcceEEEEeCCCce-e-eecCCCCcEEEE
Q 023500 152 NAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-----DRTIFSVHWSREGI-I-ASGAADDSVQFF 223 (281)
Q Consensus 152 ~~~~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~-~-~~~~~d~~~~~~ 223 (281)
+|++++|+. +..++.+.+|+.+...- .+.......... ...+..+.++|+|. + ++...++.+.+|
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTG-------AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTT-------EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCC-------ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 999996555 56788999998753100 001111111111 13477899999884 3 555668899999
Q ss_pred ecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+..... . .........+...+..++|+|+++.+++++..++.|.+|++.
T Consensus 268 ~~~~~g-----~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADG-----H-LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGG-----C-EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCC-----c-EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 775321 1 122233344556688999999998777666777999999654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-22 Score=165.90 Aligned_cols=217 Identities=17% Similarity=0.206 Sum_probs=158.3
Q ss_pred CccceeEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCc--EEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWE 75 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~---~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~~w~ 75 (281)
|...|.+++|+|+|++||+++.|+ .|.+||..+++.. .+..|.+.+.+++|+|+|++|+ +++.|+. |++||
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d 253 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 253 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEE
Confidence 567899999999999999999885 8999999877542 4567888999999999999877 6766654 89999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC--eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~--~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+..+. ...+..|...+.+++|+|+++.|++++. ++ .|++|++.... ...+ ..|...+.+++|+
T Consensus 254 ~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------~~~l----~~~~~~~~~~~~s 319 (415)
T 2hqs_A 254 LASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQRI----TWEGSQNQDADVS 319 (415)
T ss_dssp TTTCC----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CEEC----CCSSSEEEEEEEC
T ss_pred CCCCC----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------EEEE----ecCCCcccCeEEC
Confidence 87554 2456678888999999999998888876 45 67777765432 1111 1345678899999
Q ss_pred cCCCEEEEeeCC---CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCC---cEEEEec
Q 023500 153 AKGDKLVSCSDD---LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADD---SVQFFVE 225 (281)
Q Consensus 153 ~~~~~l~s~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~---~~~~~~~ 225 (281)
|++++|+.++.+ ..|.+||.+.++.. .+.. + ..+.++.|+|++. ++.++.++ .+++|+.
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~------------~l~~-~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQ------------VLSS-T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCEE------------ECCC-S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCEE------------EecC-C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 999999888764 58999988643221 1111 2 2678899999874 55555554 5777755
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 259 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 259 (281)
... .......|...|.+++|+|..
T Consensus 386 ~g~----------~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 386 DGR----------FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TSC----------CEEECCCSSSEEEEEEECCCC
T ss_pred CCC----------cEEEeeCCCCCCcCCcccccc
Confidence 321 123345788899999999964
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-21 Score=161.51 Aligned_cols=223 Identities=11% Similarity=0.063 Sum_probs=155.0
Q ss_pred CCEEEEeeCC------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC---cEEEEEecCCCeeEEe
Q 023500 15 GKLLATASFD------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK---SVWIWEVMPGNEFECV 85 (281)
Q Consensus 15 ~~~l~tg~~d------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---~v~~w~~~~~~~~~~~ 85 (281)
+..++.++.+ +.|++||..+.. ...+.+|...+.+++|+|+|++|++++.|+ .|++||+..++.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----
Confidence 5666666654 789999986543 456677899999999999999999999875 999999976643
Q ss_pred EeecCCccceeEEEecCCCCeEE-EEecCCe--EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLF-SCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~--v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..+..|...+.+++|+|+++.|+ +++.|+. |++|++.... ...+ ..|...+.+++|+|+++.|+.++
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~------~~~l----~~~~~~~~~~~~spdg~~l~~~s 285 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ------IRQV----TDGRSNNTEPTWFPDSQNLAFTS 285 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------EEEC----CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC------EEeC----cCCCCcccceEECCCCCEEEEEE
Confidence 23556777899999999999777 6776664 8899876532 1222 35667899999999999888877
Q ss_pred C-CC--cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCC---CcEEEEecccCCCcCCcc
Q 023500 163 D-DL--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAAD---DSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 163 ~-d~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d---~~~~~~~~~~~~~~~~~~ 235 (281)
. ++ .|.+||...+... .+ ..+...+.++.|+|++. ++.++.+ ..+.+|+.....
T Consensus 286 ~~~g~~~i~~~d~~~~~~~------------~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------ 346 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQ------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------ 346 (415)
T ss_dssp CTTSSCEEEEEETTSSCCE------------EC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------
T ss_pred CCCCCcEEEEEECCCCCEE------------EE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------
Confidence 5 55 4555566533211 11 12445677899999874 4444432 477888664321
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCC---eEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG---MIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg---~v~iw~~~~ 279 (281)
. .....|. .+.+++|+|+++.+ ++++.|+ .|++||+..
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l-~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMV-IYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEE-EEEEEETTEEEEEEEETTS
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEE-EEEEcCCCccEEEEEECCC
Confidence 1 1122333 78999999998754 4555555 799998753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=165.05 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=124.8
Q ss_pred ccceeEEEEcCCCCEEE----EeeCCCcEEEEecCCC---------ceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCC
Q 023500 3 TRTVRSCAWSPSGKLLA----TASFDATTCIWEDVGG---------DYECVATLEGHENEVKSVSWNAS-GTLLATCGRD 68 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~----tg~~d~~i~lw~~~~~---------~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d 68 (281)
...|++++|+|+|++|| +|+.|+.|+|||..+. .......+.+|...|.+++|+|+ +.+|++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 34699999999999999 8999999999997432 11124566789999999999997 8899999999
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec---cCCcccc
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---NNGHSST 145 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~---~~~h~~~ 145 (281)
++|++||+.... ......+|...|++++|+|++++|++|+.|++|++|+.+.. ....+... ...|...
T Consensus 172 g~v~iwD~~~~~---~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~ 242 (434)
T 2oit_A 172 GSIAVLQVTETV---KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ------EKKVIPCPPFYESDHPVR 242 (434)
T ss_dssp SCEEEEEESSSE---EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC------EEEEECCCTTCCTTSCEE
T ss_pred CeEEEEEcCCCc---ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc------ccccccCCcccCCCCcee
Confidence 999999997652 23445678889999999999999999999999999987621 11111111 1134558
Q ss_pred EEEEEEccCCCEEEEe-eCCC------cEEEEeCCc
Q 023500 146 IWALSFNAKGDKLVSC-SDDL------TIKIWGADI 174 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~-~~d~------~i~~w~~~~ 174 (281)
|.+++|++++.++++. ..|| .+++|++..
T Consensus 243 v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 243 VLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9999999988766543 3343 388998764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-21 Score=154.36 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=159.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeeeeecCC-CCCeeEEEEcCCCCEEEEec--CCCcEEEEEec
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGH-ENEVKSVSWNASGTLLATCG--RDKSVWIWEVM 77 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~--~d~~v~~w~~~ 77 (281)
|...|.+++|+|+|++|++++ ++.|.+||..+ ++.. ....+| ...+.+++|+|+|++|++++ .++...+|.+.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 457799999999999999887 78999999877 6532 333444 47889999999999999988 44567777764
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeEE-EEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
..... ...+..+. .+..++|+|+++.++ +++.|+.+++|+++.... ....+ ..|...+.+++|+|+++
T Consensus 117 ~~~~~--~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~----~~~~~----~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 117 STGGT--PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG----VETRL----THGEGRNDGPDYSPDGR 185 (297)
T ss_dssp TTCCC--CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC----CEEEC----CCSSSCEEEEEECTTSS
T ss_pred CCCCc--eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC----cceEc----ccCCCccccceECCCCC
Confidence 32211 23333333 488899999999776 788999999998643211 11111 24567789999999999
Q ss_pred EEEEee-CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCC-----------CcEEEE
Q 023500 157 KLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAAD-----------DSVQFF 223 (281)
Q Consensus 157 ~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----------~~~~~~ 223 (281)
.|+.++ .++.+++|+.+.... ....+. .+...+..+.|+|++. ++.++.+ ..+.+|
T Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~----------~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRVDGS----------SVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EEEEEECTTSSCEEEEEETTSS----------CEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred EEEEEecCCCCccEEEECCCCC----------CcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 877665 589999997652210 111111 2345677889999874 4444443 457777
Q ss_pred ecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCC
Q 023500 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 270 (281)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg 270 (281)
+..... . ..+.....|...+..++|+|+++.+++++..++
T Consensus 255 d~~~~~-----~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 255 DMDGGN-----V--ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ETTSCS-----C--EEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ecCCCC-----c--eeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 654321 1 112223357778999999999886655554443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-20 Score=152.87 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=158.8
Q ss_pred EEEEeeCCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-CcEEEEEecC-CCeeEEeEeecCCcc
Q 023500 17 LLATASFDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-KSVWIWEVMP-GNEFECVSVLQGHAQ 93 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~v~~w~~~~-~~~~~~~~~~~~~~~ 93 (281)
++++++.|+.|.+|+.. ++....+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.. ......+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 45566889999999974 3333334443 477889999999999988888776 9999999972 22233344444444
Q ss_pred ceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEe
Q 023500 94 DVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWG 171 (281)
Q Consensus 94 ~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~ 171 (281)
.+..++|+|+++.+++++. ++.|.+|++.... .......+. . ...+.+++|+|+++++++++ .++.|.+||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~----~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL--PVGVVDVVE----G-LDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE--EEEEEEEEC----C-CTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc--ccccccccc----C-CCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 6899999999998766665 8899999885211 111122221 2 23478899999999887776 899999999
Q ss_pred CCc-cccccCCCCcccceeE--EeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccc-eeeee-ecc
Q 023500 172 ADI-TRMQSGDGYASWRHLC--TISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSY-KMLLK-KEK 244 (281)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~-~~~ 244 (281)
+.. +.. .... .........+..+.|+|++. ++++..++.+.+|+..... +... ..... ...
T Consensus 158 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~---g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 158 VSDDGHL---------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH---GNIECVQTLDMMPE 225 (343)
T ss_dssp ECTTSCE---------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT---SCCEEEEEEECSCT
T ss_pred ecCCCce---------eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC---CcEEEEeeccccCc
Confidence 763 211 1111 11111234677889999873 4455578899999774311 1110 11111 111
Q ss_pred C--CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 245 A--HDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 245 ~--h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. ....+..++|+|+++.+++++..|+.|++|++.
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 1 134567899999998877788889999999986
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-20 Score=151.95 Aligned_cols=253 Identities=12% Similarity=0.042 Sum_probs=161.7
Q ss_pred cceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC---cEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK---SVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---~v~~w~~~~~ 79 (281)
..+ .++|+|+|+++++++. ++.|.+||..+++. ....+..+..+..+++|+|+|++|+++..++ .|.+||+..+
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 445 8999999996655554 88999999877653 1445555666666699999999998665553 8999998755
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEE-EEecCCe-EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~d~~-v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
+. +..+.. .....+++|+|+++.++ +...++. +.+|++....... ... .... .....+..++|+|++++
T Consensus 119 ~~---~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~--~~~-~~~~--~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 119 KF---ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF--DTG-QEFI--SGGTRPFNITFTPDGNF 189 (331)
T ss_dssp EE---EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE--EEE-EEEE--CSSSSEEEEEECTTSSE
T ss_pred Ce---EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe--ecC-Cccc--cCCCCccceEECCCCCE
Confidence 42 333333 33468999999998555 4455588 9999887432110 000 1111 12344789999999985
Q ss_pred E-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCc
Q 023500 158 L-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 158 l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
+ +++..++.|.+||.+..+. ......+. ....+..+.++|++. +++...++.+.+|+........
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~--------~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-- 257 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPEN--------ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-- 257 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTS--------CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE--
T ss_pred EEEEeCCCCeEEEEECCCCcc--------cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee--
Confidence 5 5555789999999864322 01122222 234566788998875 4444557788888765422100
Q ss_pred cceeeeeeccCCCCC---eeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 235 SYKMLLKKEKAHDMD---VNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
..........+..+ ...++|+|+++.++++++.++.|++||+..+
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 258 -VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp -EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred -ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 00001000011122 2558999999888788888899999998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-21 Score=172.56 Aligned_cols=245 Identities=10% Similarity=0.090 Sum_probs=163.9
Q ss_pred cceeEEEEcCCCCEEEEeeC-CC-----cEEEEecCCCceeeeeeecCCC----------------------CCeeEEEE
Q 023500 4 RTVRSCAWSPSGKLLATASF-DA-----TTCIWEDVGGDYECVATLEGHE----------------------NEVKSVSW 55 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~-d~-----~i~lw~~~~~~~~~~~~~~~h~----------------------~~v~~v~~ 55 (281)
..|..++|+|||++|++++. |+ .|.+||..+++...+....++. ..+.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 56889999999999999998 88 8999998877644333322222 33789999
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee
Q 023500 56 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI 135 (281)
Q Consensus 56 ~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 135 (281)
+|||++|++++. ++|++||+..+... ....+..|...+..++|+|+++.|+.++ ++.|++|++.... . ..+
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~-~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-----~-~~~ 187 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKA-AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-----Q-MQL 187 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTT-SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-----E-EEC
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcc-eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-----E-EEe
Confidence 999999999887 99999999765100 1234566777899999999999999887 5699999886532 1 111
Q ss_pred eeccCCccc----------------cEEEEEEccCCCEEEEeeCCC---------------------------------c
Q 023500 136 SESNNGHSS----------------TIWALSFNAKGDKLVSCSDDL---------------------------------T 166 (281)
Q Consensus 136 ~~~~~~h~~----------------~v~~~~~~~~~~~l~s~~~d~---------------------------------~ 166 (281)
.. .+.. .+..+.|+||++.|+.++.|+ .
T Consensus 188 ~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 188 TA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred cc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 11 1111 146799999999999987665 6
Q ss_pred EEEEeCCc-cccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecC-----CCCcEEEEecccCCCcCCccceee
Q 023500 167 IKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGA-----ADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 167 i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
|.+||.+. ++.. .+ .....+...+..+.| |+|. ++.++ .+..+++|+..... . ...
T Consensus 265 l~~~d~~~~~~~~---------~~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~-~~~ 327 (741)
T 2ecf_A 265 LGVISPAEQAQTQ---------WI-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----Q-RVL 327 (741)
T ss_dssp EEEECSSTTCCCE---------EE-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----E-EEE
T ss_pred EEEEECCCCCceE---------Ee-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----e-EEE
Confidence 77777654 3211 00 000124567788999 9874 33222 34567777654321 1 111
Q ss_pred eeec-cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 240 LKKE-KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 240 ~~~~-~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.... ...-..+..++|+|+++ ++++++.||.++||.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred EEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence 1111 11111456889999987 77888899988888764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-19 Score=156.32 Aligned_cols=255 Identities=15% Similarity=0.122 Sum_probs=165.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEec--CCCceeeeeeecCCCCCeeEEEEcC----CCCEEEEec-CCCcEEEEEecC
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWED--VGGDYECVATLEGHENEVKSVSWNA----SGTLLATCG-RDKSVWIWEVMP 78 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~~-~d~~v~~w~~~~ 78 (281)
+..++|+|+|++|++++.|+.|.+||. .+. .++..+. +......++|+| +|+++++++ .+++|.+||...
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t 257 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 257 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence 778999999999999999999999998 554 3466666 445678999999 999999888 489999999754
Q ss_pred CCeeEEeEe----------------------------------------------------ecCCccceeEEEecCCCCe
Q 023500 79 GNEFECVSV----------------------------------------------------LQGHAQDVKMVQWHPTMDV 106 (281)
Q Consensus 79 ~~~~~~~~~----------------------------------------------------~~~~~~~v~~v~~~p~~~~ 106 (281)
.+....+.. ...+...+..+.|+|++++
T Consensus 258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 332111100 0001122345678888886
Q ss_pred EEEE-ecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC-CCEEEEee-CCCcEEEEeCCccccccCCCC
Q 023500 107 LFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCS-DDLTIKIWGADITRMQSGDGY 183 (281)
Q Consensus 107 l~s~-s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~ 183 (281)
++++ ..+++|.+||..+. +++..+......|+.....+ ++|+ +..++++. .|++|++||++..... .
T Consensus 338 l~va~~~~~~v~v~D~~tg-----~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~----~ 407 (543)
T 1nir_A 338 FMTAANNSNKVAVIDSKDR-----RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP----Q 407 (543)
T ss_dssp EEEEEGGGTEEEEEETTTT-----EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT----T
T ss_pred EEEEecCCCeEEEEECCCC-----eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc----h
Confidence 5544 45778888877643 23333332223365444333 4676 56677775 6899999998742110 0
Q ss_pred cccceeEEeecccCcceEEEEeCCCce-eeecC-------CCCcEEEEecccCCCcCCccceeeeee-----ccCCCCCe
Q 023500 184 ASWRHLCTISGYHDRTIFSVHWSREGI-IASGA-------ADDSVQFFVESKDDLIDGPSYKMLLKK-----EKAHDMDV 250 (281)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v 250 (281)
..|+.+..+.. +...+..+.++|++. +.+.+ .++++.+|+....... ...+.. ...+...+
T Consensus 408 ~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-----~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 408 YAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK-----YQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp TBTSEEEEEEC-SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC-----CEEECHHHHHCCCSSCCEE
T ss_pred hcCeEEEEEEc-CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC-----eEEeechhhcccCCCCCce
Confidence 11344444442 455667788999874 44443 1679999988653321 111111 13456789
Q ss_pred eEEEEcCCCCeeEEEe----CCCCeEEEEEccc
Q 023500 251 NSVQWSPGERRLLASA----SDDGMIKIWELAN 279 (281)
Q Consensus 251 ~~~~~~~~~~~~~~s~----~~Dg~v~iw~~~~ 279 (281)
..++|+|+|+.++++. +.|+.|.|||...
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 9999999998877663 2579999999764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-20 Score=164.55 Aligned_cols=241 Identities=11% Similarity=0.143 Sum_probs=166.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.|..++|+|||++|++++. +.|.+||..++.......+..|...+.+++|+|||++|+.++. +.|++||+..+..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~--- 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ--- 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE---
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE---
Confidence 3788999999999999886 8999999877610013355678888999999999999998875 6899999875432
Q ss_pred eEeecCCcc----------------ceeEEEecCCCCeEEEEecCC---------------------------------e
Q 023500 85 VSVLQGHAQ----------------DVKMVQWHPTMDVLFSCSYDN---------------------------------T 115 (281)
Q Consensus 85 ~~~~~~~~~----------------~v~~v~~~p~~~~l~s~s~d~---------------------------------~ 115 (281)
......+.. .+..+.|+|+++.|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 222222222 147899999999999988776 7
Q ss_pred EEEEeCCC-CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-----CCcEEEEeCCccccccCCCCccccee
Q 023500 116 IKVWWAED-TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASWRHL 189 (281)
Q Consensus 116 v~~w~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~ 189 (281)
|++|++.. ... ..+.. ...|...+..++| |+++.|+..+. +..|.+||...+... ..
T Consensus 265 l~~~d~~~~~~~------~~~~~-~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---------~~ 327 (741)
T 2ecf_A 265 LGVISPAEQAQT------QWIDL-GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---------VL 327 (741)
T ss_dssp EEEECSSTTCCC------EEECC-CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---------EE
T ss_pred EEEEECCCCCce------EEecC-CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---------EE
Confidence 78887754 321 11111 1246778999999 99998887653 567888987643211 11
Q ss_pred EEeecccCc---ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEE-EEcCCCCeeEE
Q 023500 190 CTISGYHDR---TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV-QWSPGERRLLA 264 (281)
Q Consensus 190 ~~~~~~~~~---~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~ 264 (281)
....... .+..+.|++++ +++++..++..++|..... +. ......|...|..+ .|+|+++.+++
T Consensus 328 --~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~----~~-----~~~l~~~~~~v~~~~~~s~dg~~l~~ 396 (741)
T 2ecf_A 328 --AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK----GK-----AAALTHGNWSVDELLAVDEKAGLAYF 396 (741)
T ss_dssp --EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS----SC-----EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred --EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC----CC-----eeeeeecceEEEeEeEEeCCCCEEEE
Confidence 1111111 33467888877 5666778888888866421 11 12234566778887 59999987777
Q ss_pred EeCCCC--eEEEEEcc
Q 023500 265 SASDDG--MIKIWELA 278 (281)
Q Consensus 265 s~~~Dg--~v~iw~~~ 278 (281)
+++.|+ .++||++.
T Consensus 397 ~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 397 RAGIESARESQIYAVP 412 (741)
T ss_dssp EECSSCTTCBEEEEEE
T ss_pred EEeCCCCceEEEEEEE
Confidence 787777 89999875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-18 Score=141.02 Aligned_cols=258 Identities=14% Similarity=0.131 Sum_probs=160.4
Q ss_pred cceeEEEEcCCCCEEEEeeCC----CcEEEEecCC--CceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEe
Q 023500 4 RTVRSCAWSPSGKLLATASFD----ATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEV 76 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d----~~i~lw~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~ 76 (281)
.....++|+|+|++|++++.+ +.+.+|+... +....+.....+......+++ ++++|++++ .+++|.+|++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence 455678999999999888876 7999998654 454555555555566677777 788776665 6889999999
Q ss_pred cCCCeeEEe---Eeec--------CCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCC---C-ceeeeeeeeccC
Q 023500 77 MPGNEFECV---SVLQ--------GHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSD---N-WHCVQTISESNN 140 (281)
Q Consensus 77 ~~~~~~~~~---~~~~--------~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~---~-~~~~~~~~~~~~ 140 (281)
......... .... .+...+.+++|+|+++.+++++ .++.|++|+++..... . ............
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 644321111 1111 1223457899999999665544 5889999988653210 0 000000000011
Q ss_pred CccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCCce-e-eecC
Q 023500 141 GHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSREGI-I-ASGA 215 (281)
Q Consensus 141 ~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~-~~~~ 215 (281)
.+...+..++|+|+++++++++ .++.|.+|+.+.+.. +....... .+......+.|+|++. + ++..
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~---------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML---------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE---------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce---------EEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 2234567899999999777666 689999998763221 11111111 1123456889999884 4 3333
Q ss_pred C-CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 216 A-DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 216 ~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. ++.+.+|+.... .+. . ........ ...+..++|+|+++.+++++..++.|.+|++.
T Consensus 279 ~~~~~i~v~~~~~~---~g~-~-~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 279 LKADGVAIFKVDET---NGT-L-TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSSCEEEEEEECTT---TCC-E-EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEEcCC---CCc-E-EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4 578999977421 111 1 11122222 45688999999998777677688999998764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=167.96 Aligned_cols=247 Identities=11% Similarity=0.108 Sum_probs=156.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC---CeeEEEEcCCCCEEEEecCC---------CcEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN---EVKSVSWNASGTLLATCGRD---------KSVW 72 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~d---------~~v~ 72 (281)
.+..++|+|||+++++ +.|+.|++||..+++. ...+.+|.. .|.+++|||||++|++++.+ +.++
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~--~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS--TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC--EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE--EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3567899999998876 7899999999887753 344555654 49999999999999998765 6788
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec-cC-----Ccc---
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES-NN-----GHS--- 143 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~-~~-----~h~--- 143 (281)
+||+..+.. ..+....+|...+..++|+|+++.|+.++. +.|++|++..... . .+... .. ++.
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----~-~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----I-RVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----E-EEECCCBTTTEEEEECCHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----E-EEecCCCCCceECccccee
Confidence 999976653 223333445556889999999999999886 7999998765321 1 11110 00 000
Q ss_pred ------ccEEEEEEccCCCEEEEeeCCC----------------------------------cEEEEeCCccccccCCCC
Q 023500 144 ------STIWALSFNAKGDKLVSCSDDL----------------------------------TIKIWGADITRMQSGDGY 183 (281)
Q Consensus 144 ------~~v~~~~~~~~~~~l~s~~~d~----------------------------------~i~~w~~~~~~~~~~~~~ 183 (281)
..+.++.|+||++.|+.++.|+ .|.+||.........
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--- 243 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--- 243 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE---
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE---
Confidence 1237899999999999887543 577777654321000
Q ss_pred cccceeEEeecccCcceEEEEeCCCceee-ecC----CCCcEEEEecccCCCcCCccceeeeeeccCCCCCe----eEEE
Q 023500 184 ASWRHLCTISGYHDRTIFSVHWSREGIIA-SGA----ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV----NSVQ 254 (281)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~ 254 (281)
+... .....+...+..+.|+|+|.++ ... .+..+++|+.... .. ..... ..+...+ ..++
T Consensus 244 --l~~~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-----~~-~~~~~--~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 244 --MMPP-DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-----VC-TKKHE--DESEAWLHRQNEEPV 312 (723)
T ss_dssp --CCCC-CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-----CE-EEEEE--EECSSCCCCCCCCCE
T ss_pred --eeCC-ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-----cc-eEEEE--eccCCEEeccCCCce
Confidence 0000 0000124567889999998644 322 2346777765432 11 11111 1223333 3789
Q ss_pred EcCCCCeeEEE-eCCCC------eEEEEE
Q 023500 255 WSPGERRLLAS-ASDDG------MIKIWE 276 (281)
Q Consensus 255 ~~~~~~~~~~s-~~~Dg------~v~iw~ 276 (281)
|+|+|+.++.. +..|+ .|.+||
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 99999876554 56677 456666
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-19 Score=160.33 Aligned_cols=243 Identities=12% Similarity=0.158 Sum_probs=162.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-----
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP----- 78 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~----- 78 (281)
..|.+++|+|| +.++.+ .|+.+.+||..+++. ..+..+...+.+++|+|||++|+++ .|++|++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV---TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE---EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce---EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 56999999999 655544 359999999877643 2334567788999999999999985 679999999976
Q ss_pred CCeeEEeEeecCCccc--------------eeEEEecCCCCeEEEEe---------------------------------
Q 023500 79 GNEFECVSVLQGHAQD--------------VKMVQWHPTMDVLFSCS--------------------------------- 111 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~--------------v~~v~~~p~~~~l~s~s--------------------------------- 111 (281)
+.. ......+... +.++.|+|+++.|++++
T Consensus 156 g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 156 SRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred CCc---EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 443 2222223222 48999999999999887
Q ss_pred cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCccc
Q 023500 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASW 186 (281)
Q Consensus 112 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~ 186 (281)
.+..|++|+++... ...+. ....|...+..++|+|+++.|++++.++ .|.+||...+...
T Consensus 233 ~~~~l~~~d~~~~~------~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-------- 297 (706)
T 2z3z_A 233 HHVTVGIYHLATGK------TVYLQ-TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-------- 297 (706)
T ss_dssp CEEEEEEEETTTTE------EEECC-CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE--------
T ss_pred CeeEEEEEECCCCc------eEeec-cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee--------
Confidence 34678999886542 11111 1124567789999999999998877665 8999987643110
Q ss_pred ceeEEeec-ccCcceEEEEeCC--Cc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE-EEEcCCCCe
Q 023500 187 RHLCTISG-YHDRTIFSVHWSR--EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERR 261 (281)
Q Consensus 187 ~~~~~~~~-~~~~~v~~~~~~~--~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~ 261 (281)
+.+..... .....+..+.|+| ++ +++++..++..++|..... +. .......|...+.. ++|+|+++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~----~~----~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT----GR----LIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT----SC----EEEECCCSSSCEEEEEEECTTSSE
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC----CC----EEEecCCCCeEEEeeeEEcCCCCE
Confidence 11111000 0011234567888 76 4566677888899976421 11 12223456667776 799999988
Q ss_pred eEEEeCCCC----eEEEEEcc
Q 023500 262 LLASASDDG----MIKIWELA 278 (281)
Q Consensus 262 ~~~s~~~Dg----~v~iw~~~ 278 (281)
++++++.++ .|..|++.
T Consensus 370 l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 370 LYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EEEEESSSCTTCBEEEEEETT
T ss_pred EEEEecCCCCceEEEEEEEcC
Confidence 777777776 56666653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=143.57 Aligned_cols=224 Identities=10% Similarity=0.092 Sum_probs=151.9
Q ss_pred EeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeEEeEeecCC-ccceeE
Q 023500 20 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFECVSVLQGH-AQDVKM 97 (281)
Q Consensus 20 tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~~~~~~~~~-~~~v~~ 97 (281)
.++.|+.|.+||..+++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.. +.. ......+ ...+.+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCCcee---eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccccc
Confidence 4567899999998876533 3445889999999999999999987 78999999976 543 2333444 367899
Q ss_pred EEecCCCCeEEEEe--cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-EeeCCCcEEEEeCCc
Q 023500 98 VQWHPTMDVLFSCS--YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADI 174 (281)
Q Consensus 98 v~~~p~~~~l~s~s--~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~ 174 (281)
++|+|+++.+++++ .++..++|.++..... ...+. +...+..++|+|+++.|+ ++..++.+++|+++.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~----~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~ 160 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT----PRLMT-----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI 160 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC----CEECC-----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc----eEEee-----cCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence 99999999999998 4456666655322111 11121 123478899999999777 788899999998643
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCce-ee-ecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IA-SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
... ....+ ..+...+.++.|+|++. ++ ++..++.+++|...... . .......|...+..
T Consensus 161 ~~~----------~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~----~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 161 DSG----------VETRL-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----S----SVERITDSAYGDWF 221 (297)
T ss_dssp TTC----------CEEEC-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----S----CEEECCCCSEEEEE
T ss_pred CCC----------cceEc-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----C----CcEEEecCCcccCC
Confidence 210 01111 12456788899999874 44 44458889999764211 1 11223346677899
Q ss_pred EEEcCCCCeeEEEeCCC-----------CeEEEEEccc
Q 023500 253 VQWSPGERRLLASASDD-----------GMIKIWELAN 279 (281)
Q Consensus 253 ~~~~~~~~~~~~s~~~D-----------g~v~iw~~~~ 279 (281)
++|+|+++.++ .++.| +.|++||+..
T Consensus 222 ~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 222 PHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred eEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCC
Confidence 99999987654 44444 5699999764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-19 Score=152.89 Aligned_cols=240 Identities=12% Similarity=0.111 Sum_probs=164.8
Q ss_pred EEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe--cCCCeeEEeE
Q 023500 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEV--MPGNEFECVS 86 (281)
Q Consensus 10 ~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~--~~~~~~~~~~ 86 (281)
+|+|++.++++++.|+.|.+||..+++ ++.++. ++. +.+++|+|+|++|++++.|++|++||+ ... +.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEE
Confidence 488999999999999999999987765 356666 443 889999999999999999999999999 443 3344
Q ss_pred eecCCccceeEEEecC----CCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeecc------CCccc-cEEEEEEccC
Q 023500 87 VLQGHAQDVKMVQWHP----TMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESN------NGHSS-TIWALSFNAK 154 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p----~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~------~~h~~-~v~~~~~~~~ 154 (281)
.+. +......++|+| +++++++++. +++|.+||..... ++..+.... .-|+. .+.++.++|+
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----PKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-----EEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-----cceeecccCcccCccccccCCceEEEEECCC
Confidence 454 345679999999 9999988884 8999999876532 333332100 01333 6889999997
Q ss_pred CC-EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCc
Q 023500 155 GD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 155 ~~-~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~ 231 (281)
+. ++++...++.|.+||....+.. . ...+. +...+..+.|+|++. ++++..++.+.+|+.....+
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l--------~-~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l- 358 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNL--------T-VTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL- 358 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSC--------E-EEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE-
T ss_pred CCEEEEEECCCCeEEEEEecCCCcc--------e-eEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE-
Confidence 65 5667778999999997642210 1 11111 344566788998874 34555688999997754311
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC-CCCeEEEEEccc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS-DDGMIKIWELAN 279 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~v~iw~~~~ 279 (281)
...+-.....|......+ ++|++..++++++ .|++|.|||+..
T Consensus 359 ----~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 359 ----SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp ----EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ----EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 111111112355444333 4677566788876 689999999864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=160.70 Aligned_cols=248 Identities=10% Similarity=0.087 Sum_probs=157.1
Q ss_pred ceeEEEEcCCCCEEEEeeCC---------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 5 TVRSCAWSPSGKLLATASFD---------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d---------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.|..++|+|||++||+++.+ +.+.+||..+++...+....+|...+..++|||||++|+.++. ++|++|+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 48999999999999999875 6788999887764334444456666899999999999999886 7999999
Q ss_pred ecCCCeeEEeEeecCCccc------------------eeEEEecCCCCeEEEEecCC-----------------------
Q 023500 76 VMPGNEFECVSVLQGHAQD------------------VKMVQWHPTMDVLFSCSYDN----------------------- 114 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~------------------v~~v~~~p~~~~l~s~s~d~----------------------- 114 (281)
+..+.. ......+... +.++.|+|+++.|++++.|+
T Consensus 141 ~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 141 HVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp SSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred CCCCce---EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 876543 2223333322 37899999999999887653
Q ss_pred -----------eEEEEeCCCCCCCCceeeeeeee--ccCCccccEEEEEEccCCCEEEEeeC----CCcEEEEeCCcccc
Q 023500 115 -----------TIKVWWAEDTDSDNWHCVQTISE--SNNGHSSTIWALSFNAKGDKLVSCSD----DLTIKIWGADITRM 177 (281)
Q Consensus 115 -----------~v~~w~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~i~~w~~~~~~~ 177 (281)
.|++|++..... ...+.. ....+...+..++|+||++.+++... +..|.+||...++.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTH-----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCC-----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred CCCCCCCCCeeEEEEEECCCCce-----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 688887765321 111210 01123567899999999998876643 35788898764332
Q ss_pred ccCCCCcccceeEEeecccCcce----EEEEeCCCce--eee-cCCCC----cEEEEecc--cCCCcCCccceeeeeecc
Q 023500 178 QSGDGYASWRHLCTISGYHDRTI----FSVHWSREGI--IAS-GAADD----SVQFFVES--KDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~--~~~-~~~d~----~~~~~~~~--~~~~~~~~~~~~~~~~~~ 244 (281)
. .. ....+...+ ..+.|+|+|. +.. ...++ ..++|... ...... .... ..
T Consensus 293 ~---------~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~----l~ 355 (723)
T 1xfd_A 293 T---------KK--HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND--NIQS----IT 355 (723)
T ss_dssp E---------EE--EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC--CCCB----SC
T ss_pred e---------EE--EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc--ceeE----ee
Confidence 1 11 111112222 2568888874 332 44566 44444332 111000 0111 11
Q ss_pred CCCCCeeE-EEEcCCCCeeEEEeCCC--CeEEEEEcc
Q 023500 245 AHDMDVNS-VQWSPGERRLLASASDD--GMIKIWELA 278 (281)
Q Consensus 245 ~h~~~v~~-~~~~~~~~~~~~s~~~D--g~v~iw~~~ 278 (281)
.+...+.. ++|+|+++.++.++..| +.++||++.
T Consensus 356 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 356 SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 22334544 69999998766666666 889999975
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-19 Score=159.07 Aligned_cols=248 Identities=14% Similarity=0.205 Sum_probs=160.4
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-----CceeeeeeecCCCCC--------------eeEEEEcCCCCEEE
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVG-----GDYECVATLEGHENE--------------VKSVSWNASGTLLA 63 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-----~~~~~~~~~~~h~~~--------------v~~v~~~~~~~~l~ 63 (281)
...+..++|+|||++||.+ .|+.|.+|+..+ ++...+ ...+... +.++.|+|||++|+
T Consensus 120 ~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 120 NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence 4567788999999999985 689999999876 543222 2222232 48899999999999
Q ss_pred Eec---------------------------------CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEE
Q 023500 64 TCG---------------------------------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110 (281)
Q Consensus 64 s~~---------------------------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 110 (281)
+++ .+..|++||+..+.. ..+.....|...+..++|+|+++.++++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~ 275 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILYVA 275 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEEEE
Confidence 887 456899999875532 1122122466778999999999999988
Q ss_pred ecCC-----eEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEcc--CCCEEEEeeCCCcEEEEeCCccccccCCC
Q 023500 111 SYDN-----TIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGDG 182 (281)
Q Consensus 111 s~d~-----~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 182 (281)
+.++ .|++|++.... ....+.. ........+..+.|+| ++++++++..|+.+++|..+...
T Consensus 276 ~~~~~~~~~~v~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~------ 344 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAETGR-----FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG------ 344 (706)
T ss_dssp EECTTSCEEEEEEEETTTCC-----EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS------
T ss_pred EeCCCCCeeEEEEEECCCCc-----eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC------
Confidence 8776 89999886541 1111211 1111112245689999 99999999999999999764211
Q ss_pred CcccceeEEeecccCcceEE-EEeCCCc--eeeecCCCC--cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 183 YASWRHLCTISGYHDRTIFS-VHWSREG--IIASGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~--~~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
.....+. .+...+.. +.|++++ +++++..++ ...+|...... +. ... ..|...+..++|+|
T Consensus 345 ----~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~---~~-~~~-----l~~~~~~~~~~~sp 410 (706)
T 2z3z_A 345 ----RLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG---GK-TKD-----LTPESGMHRTQLSP 410 (706)
T ss_dssp ----CEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC---CC-CEE-----SCCSSSEEEEEECT
T ss_pred ----CEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC---CC-cee-----ccCCCceEEEEECC
Confidence 1111221 23445555 6888877 344455544 34555432111 11 111 12556789999999
Q ss_pred CCCeeEEEeCCC---CeEEEEEccc
Q 023500 258 GERRLLASASDD---GMIKIWELAN 279 (281)
Q Consensus 258 ~~~~~~~s~~~D---g~v~iw~~~~ 279 (281)
+++.++.+++.+ +.|++||+..
T Consensus 411 dg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 411 DGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp TSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCCEEEEEecCCCCCcEEEEEECCC
Confidence 998766555544 5699999754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-18 Score=136.89 Aligned_cols=241 Identities=8% Similarity=0.050 Sum_probs=157.1
Q ss_pred EEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecCCCeeEEeE
Q 023500 9 CAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 9 ~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~~~~~ 86 (281)
+.|.++++ ++++++.++.|.+||..+++. ...+..+.... +++|+|+|+++++++ .++.|.+||+..+... ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI--LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE--EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce--eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EE
Confidence 34666655 578888999999999887764 33444455666 999999999766555 4899999999766531 23
Q ss_pred eecCCccceeEEEecCCCCeEEEEecCC---eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE-ee
Q 023500 87 VLQGHAQDVKMVQWHPTMDVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS-CS 162 (281)
Q Consensus 87 ~~~~~~~~v~~v~~~p~~~~l~s~s~d~---~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~ 162 (281)
.+..+.....+++|+|++++++++..++ .|.+|+.+... .+..+. +...+..++|+|++++|++ +.
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-----~~~~~~-----~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-----FISTIP-----IPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-----EEEEEE-----CCTTEEEEEECTTSSCEEEEEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-----eEEEEE-----CCCCccceEECCCCCEEEEEec
Confidence 3344444444599999999988555553 89999886542 222222 1234689999999985554 45
Q ss_pred CCCc-EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 163 DDLT-IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 163 ~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
.++. +.+|+++...... ... .... ........+.++|++ ++++...++.+.+|+....... ..
T Consensus 148 ~~~~~i~~~~~~~~g~~~-----~~~-~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-----~~- 213 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLF-----DTG-QEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-----TL- 213 (331)
T ss_dssp TTTTEEEEEEECTTCCEE-----EEE-EEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-----EE-
T ss_pred CCCceEEEEEECCCCcEe-----ecC-Cccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-----ce-
Confidence 6688 9999876321100 000 1111 123456788999987 3556667889999987543210 00
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... +...+..++|+|+++.++++...++.|.+||+..
T Consensus 214 ~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 214 LNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred eeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 11111 2356788999999987777777788999999764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=137.37 Aligned_cols=239 Identities=9% Similarity=0.071 Sum_probs=162.1
Q ss_pred cceeEEEEcCCCCEEEEeeC-------CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEE
Q 023500 4 RTVRSCAWSPSGKLLATASF-------DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWE 75 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~-------d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~ 75 (281)
..+..++|+|+|+++++++. ++.|.+||..+++. +..+. .......++|+|+|++ +++...++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 45678999999998877764 56899999877653 33333 2345778999999985 45666789999999
Q ss_pred ecCCCeeEEeEeecCCcc---------ceeEEEecCCCCeEEEEe--cCCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 76 VMPGNEFECVSVLQGHAQ---------DVKMVQWHPTMDVLFSCS--YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~---------~v~~v~~~p~~~~l~s~s--~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
...++.. ..+..+.. .+..+.|+|+++.++.++ .++.|.+|+.+... ....+. .+..
T Consensus 118 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-----~~~~~~----~~~~ 185 (353)
T 3vgz_A 118 AKTGEVK---GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-----LKTAIQ----NTGK 185 (353)
T ss_dssp TTTCCEE---EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-----EEEEEC----CCCT
T ss_pred CCCCeeE---EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-----eEEEec----CCCC
Confidence 8766532 22222211 268899999999777665 47899999876532 222221 1233
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec---ccCcceEEEEeCCCc--eeeecCCCCc
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREG--IIASGAADDS 219 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~--~~~~~~~d~~ 219 (281)
.+..++|+|+++.|++++.++.+.+||....+.. ..... .+...+..+.+++++ ++++...++.
T Consensus 186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTNADGELITIDTADNKIL-----------SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE-----------EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE-----------EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 4678899999999999999999999998643321 11111 123346678888876 3455556689
Q ss_pred EEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+|+..... .... ..... ...++|+|+++.++++...++.|.+||+..
T Consensus 255 v~~~d~~~~~-----~~~~----~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 255 VLVVDTRNGN-----ILAK----VAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEETTTCC-----EEEE----EECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCc-----EEEE----EEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 9999765321 1111 11111 256899999987888888899999999764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=155.65 Aligned_cols=230 Identities=12% Similarity=0.124 Sum_probs=155.3
Q ss_pred ccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecC---CCcEEEEEec
Q 023500 3 TRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGR---DKSVWIWEVM 77 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~ 77 (281)
..+|+.++|+|||+.||.++. |+++.||+..++.. ..+..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 357999999999999999887 99999999765542 3444455 68999999999 77776664 5667787775
Q ss_pred C--CCeeEEeEeecCCccceeEEEecCCCC--eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 78 P--GNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 78 ~--~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
. ..... .+... ......+|+|+++ .+++++.+ .+.+|+++... ...+.. +.. .+++|+|
T Consensus 97 ~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~------~~~l~~----~~~--~~~~~sp 159 (582)
T 3o4h_A 97 TSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGG------LRELAR----LPG--FGFVSDI 159 (582)
T ss_dssp TTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTE------EEEEEE----ESS--CEEEEEE
T ss_pred ccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCc------EEEeec----CCC--ceEEECC
Confidence 5 33222 22222 2244668888876 34444444 44599876532 122221 122 6889999
Q ss_pred CCCEEEEeeCC----CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCC--cEEEEecc
Q 023500 154 KGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADD--SVQFFVES 226 (281)
Q Consensus 154 ~~~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~--~~~~~~~~ 226 (281)
||+.|++++.+ +.|.+||.+.++. + .+. .+...+....|+|+|. ++++..++ .+++|+..
T Consensus 160 DG~~la~~~~~~~~~~~i~~~d~~~g~~---------~---~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 160 RGDLIAGLGFFGGGRVSLFTSNLSSGGL---------R---VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCC---------E---EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT
T ss_pred CCCEEEEEEEcCCCCeEEEEEcCCCCCc---------e---Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCC
Confidence 99999988776 6788998764322 1 111 2456678899999985 55555677 67777554
Q ss_pred cCCCcCCccceeeeeeccCCCCCeeEEE--------EcCCCCeeEEEeCCCCeEEEEEc
Q 023500 227 KDDLIDGPSYKMLLKKEKAHDMDVNSVQ--------WSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
... .. ....|...+..++ |+|++ .++++++.|+.++||++
T Consensus 227 ~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 227 DGS---------VE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp TCC---------EE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred CCc---------EE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 321 11 2345666677677 99998 68889999999999987
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-17 Score=136.83 Aligned_cols=258 Identities=11% Similarity=0.063 Sum_probs=157.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecC-CCceeeeeeecCCCCCeeEEEEcCCCCE--EEEec-------------CC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTL--LATCG-------------RD 68 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~-------------~d 68 (281)
.+..++|+|+|++|++++.+ .+.+|+.. +++...+.....+ +....++|+|+|++ +++++ .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 57789999999999998888 89999975 5543322222211 23556899999994 55654 68
Q ss_pred CcEEEEEecC-CCeeEEeEeec-CCccceeEEEecCCCCeEEEEec-CCeEEEEeCC-CCCCCCceeeeeeeeccCCccc
Q 023500 69 KSVWIWEVMP-GNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAE-DTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 69 ~~v~~w~~~~-~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~-~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
+++.+|++.. +.....+..+. .+...+.++.|+|++++++++.. ++.|++|+++ ... ...+..+. ...|..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~---~~~~~~~~--~~~~g~ 193 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE---VELVGSVD--APDPGD 193 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---EEEEEEEE--CSSTTC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC---EEEeeeEe--cCCCCC
Confidence 9999999964 33222222221 24567899999999998877654 6799999886 321 11111121 111335
Q ss_pred cEEEEEEccCCCEEEEeeC-CCcEEEEeCCc--cccccCCCCcccceeEEeec---ccCc------ceEEEE-eCCCce-
Q 023500 145 TIWALSFNAKGDKLVSCSD-DLTIKIWGADI--TRMQSGDGYASWRHLCTISG---YHDR------TIFSVH-WSREGI- 210 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~-d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~------~v~~~~-~~~~~~- 210 (281)
.+..++|+|++++|+++.. ++.+.+|+.+. ++... .......+.. .+.. .+..+. ++|+|.
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-----THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-----ccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence 5889999999998877664 78999997642 11100 0000111110 0111 467888 999883
Q ss_pred eeecCC-CC-----cEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC---CCCeeEEEeCCCCeEEEEEccc
Q 023500 211 IASGAA-DD-----SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP---GERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 211 ~~~~~~-d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++++.. +. .+.+|++... +.. .........+...+..++|+| +++.++++...++.|+||++..
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~----g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDC----GSI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTT----SCE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEECCCCCCCCCCeEEEEEECCC----CCE-EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 444332 22 7999977421 111 111111222444567789999 7876554445569999998753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-17 Score=133.46 Aligned_cols=238 Identities=9% Similarity=0.054 Sum_probs=150.4
Q ss_pred CCCcEEEEecC--CCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC---CCcEEEEEecCCCeeEEeEeecCCccceeE
Q 023500 23 FDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97 (281)
Q Consensus 23 ~d~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~ 97 (281)
.++.|.+|+.. +++...+.. ..+......++|+|+|+ |++++. ++.|.+|++..+. ...+..+..+...+..
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~ 90 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAY 90 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSE
T ss_pred CCCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEE
Confidence 45667777653 444433333 33556678899999999 554443 6899999995443 3344444456677899
Q ss_pred EEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccC-----CccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 98 VQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNN-----GHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 98 v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
++|+|+++++++++ .+++|.+|++..... ...+..+..... .+...+.+++|+|+++.+++...++.|.+|+
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGA--LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSC--EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCC--eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 99999999888877 678999999864221 112222211100 1223578899999999777777788999998
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCC---
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH--- 246 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--- 246 (281)
++... ...............+..+.|+|++. +++...++.+.+|+..... +.. . ........
T Consensus 169 ~~~~g--------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~---g~~-~-~~~~~~~~~~~ 235 (347)
T 3hfq_A 169 VSDAG--------QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT---GAF-T-QLGIVKTIPAD 235 (347)
T ss_dssp ECTTS--------CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT---TEE-E-EEEEEESSCTT
T ss_pred ECCCC--------cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC---Cce-E-EeeeeeecCCC
Confidence 76211 01111111111233566789999874 4455678899999765311 110 1 11111111
Q ss_pred ---CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 247 ---DMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 247 ---~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...+..++|+|+++.+++++..++.|.+|++.
T Consensus 236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 13488899999998777888889999999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-17 Score=134.93 Aligned_cols=244 Identities=7% Similarity=0.038 Sum_probs=153.8
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEe
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
.++++++++++++++.++.|.+||..+++. +..+..+. ..+..++|+|+|+++ ++++.++.|.+||+..++. .
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~---~ 78 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---T 78 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE--EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE---E
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE--EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE---E
Confidence 356788899999999999999999877653 44444332 257889999999865 5666789999999875543 2
Q ss_pred Eeec-CC-----ccceeEEEecCCCCeEEEEecC------------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 86 SVLQ-GH-----AQDVKMVQWHPTMDVLFSCSYD------------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 86 ~~~~-~~-----~~~v~~v~~~p~~~~l~s~s~d------------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
..+. .+ ...+..+.|+|+++++++++.+ +.|.+|+++..... +.+.... +...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~-----~~~~~~ 151 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVRTFP-----MPRQVY 151 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSEEEE-----CCSSCC
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--ceeeecc-----CCCccc
Confidence 2222 22 3347899999999999888865 89999988653211 1111111 233577
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcc--------------c----------cee-EEee---------
Q 023500 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS--------------W----------RHL-CTIS--------- 193 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~--------------~----------~~~-~~~~--------- 193 (281)
+++|+|+++ ++.++. .|.+||.+..+......... | .+. ..+.
T Consensus 152 ~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 152 LMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp CEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred ceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 899999999 555544 49999976443211100000 0 000 0000
Q ss_pred ----------c------------ccCcceEEEEeCC-Cce-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCC
Q 023500 194 ----------G------------YHDRTIFSVHWSR-EGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249 (281)
Q Consensus 194 ----------~------------~~~~~v~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 249 (281)
. .....+..+.+++ ++. ++++ ++.+.+|+.... . ...... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-----~----~~~~~~-~~~~ 296 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-----K----LIKAAN-LDHT 296 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-----E----EEEEEE-CSSC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-----e----EEEEEc-CCCC
Confidence 0 0112345667778 764 4433 788999976432 1 111111 2234
Q ss_pred eeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 250 VNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 250 v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+.+++|+|+++.+++ ++.++.|++||+..
T Consensus 297 ~~~~~~s~dg~~l~~-~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYL-GGTFNDLAVFNPDT 325 (349)
T ss_dssp CCEEEECSSSSCEEE-ESBSSEEEEEETTT
T ss_pred ccceEECCCCCEEEE-ecCCCeEEEEeccc
Confidence 778999999876654 67789999999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-18 Score=157.78 Aligned_cols=190 Identities=8% Similarity=0.017 Sum_probs=140.9
Q ss_pred ccceeEEEEc-CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC-CeeEEEEcCCCCEEEEecCCCcEE-EEEecCC
Q 023500 3 TRTVRSCAWS-PSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN-EVKSVSWNASGTLLATCGRDKSVW-IWEVMPG 79 (281)
Q Consensus 3 ~~~i~~~~~~-~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~v~-~w~~~~~ 79 (281)
...+..++|+ |||++||+++ ++.+.+|+..++.. ..+..|.+ .+..++|+ +|+.|+.++.+..+. +|++..+
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV---LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE---EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce---EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 3468999999 9999999887 78899998776542 34566777 89999999 999999998888888 8887654
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.. ..+.+|...+..++|+|+++.+++++.++.|++|+++... ...+. .+|...+..++|+|++++|+
T Consensus 370 ~~----~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~------~~~~~---~~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 370 KA----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK------PTVIE---RSREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp CE----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC------EEEEE---ECSSSCCCCEEECTTSCEEE
T ss_pred Cc----eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc------eEEec---cCCCCCccceEECCCCCeEE
Confidence 32 2334777889999999999999999999999999987542 11121 24677788999999999998
Q ss_pred EeeCCC----------cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEE
Q 023500 160 SCSDDL----------TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFF 223 (281)
Q Consensus 160 s~~~d~----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~ 223 (281)
+++.++ .|++||.+.++. ..+. .+...+..+.|+++|. ++..+.++....|
T Consensus 437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~~------------~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 437 YGFPLKHGETDGYVMQAIHVYDMEGRKI------------FAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEE------------EECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred EEecCccccccCCCCCeEEEEECCCCcE------------EEee-CCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 887654 899999864321 1111 2345567788998874 5555554444444
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=154.28 Aligned_cols=245 Identities=13% Similarity=0.123 Sum_probs=150.5
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC---CeeEEEEcCCCCEEEEecC---------CCcEEEEE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN---EVKSVSWNASGTLLATCGR---------DKSVWIWE 75 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~---------d~~v~~w~ 75 (281)
.++|+|+|++++++ .|+.|.+||..+++.. ..+.+|.. .+.+++|||||++|++++. |++|++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 67899999766654 6999999999877643 33343433 4899999999999998876 78999999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE---------
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI--------- 146 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v--------- 146 (281)
+..+.... ...+ ...+..++|+|+++.|+.++ |+.|++|++..... . .+. ..++...+
T Consensus 97 ~~~g~~~~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-----~-~l~--~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 97 LSNGEFVR-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-----F-QIT--FNGRENKIFNGIPDWVY 163 (719)
T ss_dssp TTTTEECC-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-----E-ECC--CCCBTTTEEESSCCHHH
T ss_pred CCCCcccc-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-----E-EEe--cCCCcCCeEccccccee
Confidence 87553200 0112 24588999999999999876 78999998765421 1 111 01222211
Q ss_pred --------EEEEEccCCCEEEEeeCCC----------------------------------cEEEEeCCccccccCCCCc
Q 023500 147 --------WALSFNAKGDKLVSCSDDL----------------------------------TIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 147 --------~~~~~~~~~~~l~s~~~d~----------------------------------~i~~w~~~~~~~~~~~~~~ 184 (281)
.++.|+|||+.|+.++.|. .|.+||.+.+.......+
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~- 242 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV- 242 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC-
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc-
Confidence 4799999999999987552 677787764332100000
Q ss_pred ccceeEEeecccCcceEEEEeCCCceeeecC---CCC--cEEEEe----cccCCCcCCccceeeee-eccCCCCCee---
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREGIIASGA---ADD--SVQFFV----ESKDDLIDGPSYKMLLK-KEKAHDMDVN--- 251 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~d~--~~~~~~----~~~~~~~~~~~~~~~~~-~~~~h~~~v~--- 251 (281)
.....+ ..+...+..+.|+|++.++... .++ .+.+|+ ...... ..+.. ....|...+.
T Consensus 243 --~~~~~~-~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 243 --PVPAMI-ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC------PKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp --CCCHHH-HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC------CGGGEEEEECSSSCSSSSS
T ss_pred --cCCccC-CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce------EEEEecccccCCceEcccc
Confidence 000000 1245667889999998655432 222 355565 322110 01110 0124566666
Q ss_pred --EEEEcCCCCeeEE-EeCCCCe--EEEEEcc
Q 023500 252 --SVQWSPGERRLLA-SASDDGM--IKIWELA 278 (281)
Q Consensus 252 --~~~~~~~~~~~~~-s~~~Dg~--v~iw~~~ 278 (281)
.+.|+|+++.++. ++..+|. |.+|++.
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence 7899999876544 4555665 5555543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-17 Score=152.51 Aligned_cols=242 Identities=10% Similarity=0.021 Sum_probs=166.0
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEE-EEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTC-IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~-lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
.+..++|+ +|+.|+.++.++.+. +|+..++.. ..+.+|...+..++|+|+|++|++++.++.|++||+..+..
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~---~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-- 412 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA---EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-- 412 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--
Confidence 68889999 999999999888888 888776543 23347888999999999999999999999999999976643
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCC----------eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----------~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
...+.+|...+..++|+|+++++++++.++ .|++|++.... ...+ ..|...+..+.|+|
T Consensus 413 -~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------~~~l----~~~~~~~~~~~~sp 481 (1045)
T 1k32_A 413 -TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------IFAA----TTENSHDYAPAFDA 481 (1045)
T ss_dssp -EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------EEEC----SCSSSBEEEEEECT
T ss_pred -EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc------EEEe----eCCCcccCCceEcC
Confidence 334457888899999999999998887654 99999886531 1222 24666788899999
Q ss_pred CCCEEEEeeCCCcEEEEeCCccccccC------------CC-------------------Ccc-cceeEEeecccCcceE
Q 023500 154 KGDKLVSCSDDLTIKIWGADITRMQSG------------DG-------------------YAS-WRHLCTISGYHDRTIF 201 (281)
Q Consensus 154 ~~~~l~s~~~d~~i~~w~~~~~~~~~~------------~~-------------------~~~-~~~~~~~~~~~~~~v~ 201 (281)
+++.|+..+.++..+.|+......... .. ... ......+. .+...+.
T Consensus 482 dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~-~~~~~~~ 560 (1045)
T 1k32_A 482 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN-VDPGDYR 560 (1045)
T ss_dssp TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS-CCCBCEE
T ss_pred CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC-CCCCChh
Confidence 999999999888777786432111000 00 000 00011111 1345677
Q ss_pred EEEeCCCce-eee-----------cCC--CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 202 SVHWSREGI-IAS-----------GAA--DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 202 ~~~~~~~~~-~~~-----------~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
.+.+++++. +++ .+. ...+.+|+.... . ...+. ..+..++|+|+++.+ ++++
T Consensus 561 ~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~-----~-~~~l~-------~~v~~~~~S~DG~~l-~~~~ 626 (1045)
T 1k32_A 561 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----K-VTEVK-------NNLTDLRLSADRKTV-MVRK 626 (1045)
T ss_dssp EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-----C-EEEEE-------EEEEEEEECTTSCEE-EEEE
T ss_pred heEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC-----c-EEEee-------cCcceEEECCCCCEE-EEEc
Confidence 888898885 332 122 335555644332 1 11111 457889999999865 4565
Q ss_pred CCCeEEEEEccc
Q 023500 268 DDGMIKIWELAN 279 (281)
Q Consensus 268 ~Dg~v~iw~~~~ 279 (281)
.| .+++||+..
T Consensus 627 ~~-~i~~~d~~~ 637 (1045)
T 1k32_A 627 DD-GKIYTFPLE 637 (1045)
T ss_dssp TT-SCEEEEESS
T ss_pred CC-cEEEEeCcc
Confidence 55 799999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-16 Score=127.50 Aligned_cols=230 Identities=8% Similarity=0.108 Sum_probs=155.0
Q ss_pred ceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCC---------CeeEEEEcCCCCEEEEec--CCCcEE
Q 023500 5 TVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHEN---------EVKSVSWNASGTLLATCG--RDKSVW 72 (281)
Q Consensus 5 ~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~---------~v~~v~~~~~~~~l~s~~--~d~~v~ 72 (281)
.+..++|+|+|++ +++...++.|.+||..+++. +..+..+.. ...+++|+|+|++++.++ .++.|.
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 4567899999995 55556679999999887754 333333322 268899999999876665 578999
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
+||+...+ ....+..+...+..+.|+|+++.+++++.++.+.+|+..... ....+.....++...+..++|+
T Consensus 168 ~~d~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 168 VVDGGNIK---LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-----ILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp EEETTTTE---EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-----EEEEEECCCSSSCCCEEEEEEE
T ss_pred EEcCCCCc---eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-----EEEEEEcCCCCCCcccceEEEC
Confidence 99986553 234444455568899999999999999999999999876542 2223322222355667889999
Q ss_pred cCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCC
Q 023500 153 AKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDD 229 (281)
Q Consensus 153 ~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~ 229 (281)
|+++.++.++ .++.|.+||....+. ...+.. . . ...+.+++++ ++++...++.+.+|+.....
T Consensus 240 ~dg~~l~~~~~~~~~v~~~d~~~~~~-----------~~~~~~-~-~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 240 TARQRAFITDSKAAEVLVVDTRNGNI-----------LAKVAA-P-E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp TTTTEEEEEESSSSEEEEEETTTCCE-----------EEEEEC-S-S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcE-----------EEEEEc-C-C-CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 9998766655 458999999864321 111111 1 1 2456777765 45666678999999764321
Q ss_pred CcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 230 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
....... ...+.+++|+|+++.++++...
T Consensus 306 ---------~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 306 ---------VVKTFDT-PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---------EEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred ---------EEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence 1111122 2357899999999877766554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-16 Score=128.07 Aligned_cols=237 Identities=13% Similarity=0.107 Sum_probs=149.9
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeec-CCCC-CeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEeecC--
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLE-GHEN-EVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQG-- 90 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~-~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~~~-- 90 (281)
++|++++.++.|.+||..+++. +..+. ++.. .+..++|+|+|+++ ++++.++.|.+||+..++....+. ...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV--DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE--EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE--EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cCCcc
Confidence 4789999999999999877653 34443 2221 47889999999765 566778999999987665322111 111
Q ss_pred -CccceeEEEecCCCCeEEEEe------------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 91 -HAQDVKMVQWHPTMDVLFSCS------------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 91 -~~~~v~~v~~~p~~~~l~s~s------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
|...+..++|+|+++.+++++ .++.|.+|+..... ....+.. ...+..++|+|++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~-----~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----RRKAFEA-----PRQITMLAWARDGSK 148 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----EEEEEEC-----CSSCCCEEECTTSSC
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-----EEEEEeC-----CCCcceeEECCCCCE
Confidence 223578899999999888876 57999999886432 2222221 234677899999998
Q ss_pred EEEeeCCCcEEEEeCCccccccC--CCC--c--ccc-------------------------------------eeEEee-
Q 023500 158 LVSCSDDLTIKIWGADITRMQSG--DGY--A--SWR-------------------------------------HLCTIS- 193 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~--~~~--~--~~~-------------------------------------~~~~~~- 193 (281)
|+++ ++.|.+||....+.... ... . .+. .+..+.
T Consensus 149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 8877 67899999764432110 000 0 000 000000
Q ss_pred ----------cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeE
Q 023500 194 ----------GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL 263 (281)
Q Consensus 194 ----------~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 263 (281)
..+...+..+.+++++..+..+ ++.+.+|+..... ...... ....+.+++|+|+++.++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg~~l~ 295 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNA---------SIKRVP-LPHSYYSVNVSTDGSTVW 295 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTE---------EEEEEE-CSSCCCEEEECTTSCEEE
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCc---------Ccceec-CCCceeeEEECCCCCEEE
Confidence 0112234568888887433333 7889999764321 111111 224578999999987655
Q ss_pred EEeCCCCeEEEEEccc
Q 023500 264 ASASDDGMIKIWELAN 279 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~~ 279 (281)
+++.|+.|++||+..
T Consensus 296 -~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 296 -LGGALGDLAAYDAET 310 (337)
T ss_dssp -EESBSSEEEEEETTT
T ss_pred -EEcCCCcEEEEECcC
Confidence 557799999999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-15 Score=122.98 Aligned_cols=257 Identities=9% Similarity=0.026 Sum_probs=154.8
Q ss_pred CCCCEEEEee----CCCcEEEEec--CCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----CcEEEEEecCC-Ce
Q 023500 13 PSGKLLATAS----FDATTCIWED--VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----KSVWIWEVMPG-NE 81 (281)
Q Consensus 13 ~~~~~l~tg~----~d~~i~lw~~--~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~~~-~~ 81 (281)
+...++..|+ .++.|.+|.. .+++...+... +......++|+|+|++|++++.+ +.|.+|++... ..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 3344556664 4568999865 44555545444 66777889999999999988876 79999999764 34
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeec------cCCccccEEEEEEccC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISES------NNGHSSTIWALSFNAK 154 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~ 154 (281)
...+.....+......+++ +++.+++++ .++.|.+|++........ ........ ...+...+.+++|+|+
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCC
Confidence 4444444445555677777 777666665 678999999864321100 00000000 0112344688999999
Q ss_pred CCEEEEe-eCCCcEEEEeCCccccccCCC-CcccceeEEeecccCcceEEEEeCCCce-e-eecCCCCcEEEEecccCCC
Q 023500 155 GDKLVSC-SDDLTIKIWGADITRMQSGDG-YASWRHLCTISGYHDRTIFSVHWSREGI-I-ASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 155 ~~~l~s~-~~d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~~ 230 (281)
+++|+.+ ..++.+.+|+++......... +................+..+.|+|++. + ++...++.+.+|+.....+
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 9966554 458899999875321100000 0000000111112344567899999873 4 4444688999997753211
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC-CCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD-DGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~-Dg~v~iw~~~ 278 (281)
. ..........+......++|+|+++.++++... ++.|.+|++.
T Consensus 246 ~----~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 246 D----EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp E----EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred E----EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 0 001111222344557899999999877777766 7899999985
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=147.70 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=106.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCC-----eeEEEEcCCCCEEEEecCC---------Cc
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE-----VKSVSWNASGTLLATCGRD---------KS 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~d---------~~ 70 (281)
....++|+|||++++++ |+.|.+|+..+++. ...+.+|... ...++|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 45688999999999886 99999999987764 3345566532 2458899999999998876 45
Q ss_pred EEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee---ccCCcc----
Q 023500 71 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE---SNNGHS---- 143 (281)
Q Consensus 71 v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~---~~~~h~---- 143 (281)
+.+||+..++ ...+..|...+..++|+|+++.|+.++ |+.|++|+...... +.+..-.. ...++.
T Consensus 94 ~~~~d~~~~~----~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 94 YDIYDLNKRQ----LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEEETTTTE----ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHH
T ss_pred EEEEECCCCc----EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce---EEEcCCCCccceecCcccccc
Confidence 6699987653 233566777899999999999998874 78999998765421 01100000 001111
Q ss_pred -----ccEEEEEEccCCCEEEEeeCCCc-EEEEe
Q 023500 144 -----STIWALSFNAKGDKLVSCSDDLT-IKIWG 171 (281)
Q Consensus 144 -----~~v~~~~~~~~~~~l~s~~~d~~-i~~w~ 171 (281)
.....+.|||||+.|+..+.|.. +++|+
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~ 199 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEE
Confidence 11235899999999988764432 44443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-17 Score=146.39 Aligned_cols=249 Identities=12% Similarity=0.112 Sum_probs=151.6
Q ss_pred ceeEEEEcCCCCEEEEeeC---------CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 5 TVRSCAWSPSGKLLATASF---------DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~---------d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.|..++|+|||++||.++. |+.|.+||..+++......+ ...+..++|||||++|+.++ |++|++|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 3889999999999998876 78999999887753100222 25688999999999999886 68999999
Q ss_pred ecCCCeeEEeEeecCCccc-----------------eeEEEecCCCCeEEEEecCC------------------------
Q 023500 76 VMPGNEFECVSVLQGHAQD-----------------VKMVQWHPTMDVLFSCSYDN------------------------ 114 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-----------------v~~v~~~p~~~~l~s~s~d~------------------------ 114 (281)
+..+.... + ...++... ..++.|+|+++.|++++.|.
T Consensus 137 ~~~g~~~~-l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 137 RPGDPPFQ-I-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp STTSCCEE-C-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred CCCCCcEE-E-ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 87654321 1 11222221 25899999999999888663
Q ss_pred ----------eEEEEeCCCCCCCCceeeeeee--eccCCccccEEEEEEccCCCEEEEeeCC----CcEEEEe----CCc
Q 023500 115 ----------TIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWG----ADI 174 (281)
Q Consensus 115 ----------~v~~w~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~~w~----~~~ 174 (281)
.|++|++........ ..+. ....+|...+..++|+||++.+++.... ..|.+|| ...
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 291 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGP---QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT 291 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCC---EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred CCCCCCCCeeEEEEEECCCCCccce---eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence 677887764321000 0110 0112577788999999998777764422 2477777 543
Q ss_pred cccccCCCCcccceeEEeecccCcceE-----EEEeCCCce--ee-ecCCCCcEEEEecccCCCcCCccceeeeeeccCC
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIF-----SVHWSREGI--IA-SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~--~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 246 (281)
++... ........+...+. .+.|+++|. ++ +...++...+|...... +. .. ....+
T Consensus 292 g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~---~~-~~----~lt~~ 355 (719)
T 1z68_A 292 WDCPK--------TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV---EN-AI----QITSG 355 (719)
T ss_dssp EECCG--------GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS---TT-CE----ECSCS
T ss_pred CceEE--------EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC---Cc-eE----ecccC
Confidence 32110 00000011233333 567888773 22 44456655555432211 11 11 12234
Q ss_pred CCCeeEEEEcCCCCeeEEEeCC----CCeEEEEEccc
Q 023500 247 DMDVNSVQWSPGERRLLASASD----DGMIKIWELAN 279 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~----Dg~v~iw~~~~ 279 (281)
...+..+.+. +++.+++++.. ++..+||.+..
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 4557777777 77777777765 68899998753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-14 Score=116.10 Aligned_cols=248 Identities=14% Similarity=0.110 Sum_probs=164.6
Q ss_pred cceeEEEEcCCCCEEEEeeCC------------------------CcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCC
Q 023500 4 RTVRSCAWSPSGKLLATASFD------------------------ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNAS 58 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d------------------------~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~ 58 (281)
..+..++++|+|+++++...+ +.|.+||..+++. +..+. ++-.....++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--EEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--EeccCCCccCCceEEEECCC
Confidence 468899999999999988877 4799999876654 23332 34457789999999
Q ss_pred CCEEEEecCCCcEEEEEecCCCeeEEeEee---------cCCccceeEEEecC-CCCeEEEEe-cCCeEEEEeCCCCCCC
Q 023500 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVL---------QGHAQDVKMVQWHP-TMDVLFSCS-YDNTIKVWWAEDTDSD 127 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---------~~~~~~v~~v~~~p-~~~~l~s~s-~d~~v~~w~~~~~~~~ 127 (281)
|+++++...++.|++|+..... ..+..+ .++-.....++++| ++.++++.+ .++.|++|+.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~--- 176 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK--- 176 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC---
T ss_pred CCEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC---
Confidence 9999999999999999964321 012222 23444678999999 788888887 6899999974321
Q ss_pred Cceeeeeeeecc------CCccccEEEEEEccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee-cccCcc
Q 023500 128 NWHCVQTISESN------NGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDRT 199 (281)
Q Consensus 128 ~~~~~~~~~~~~------~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 199 (281)
.+..+.... .++...+..++++|+ +.++++...++.|++|+.+.++.. ..+. ..+...
T Consensus 177 ---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~-----------~~~~~~~~~~~ 242 (329)
T 3fvz_A 177 ---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV-----------REIKHASFGRN 242 (329)
T ss_dssp ---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EEECCTTTTTC
T ss_pred ---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EEEeccccCCC
Confidence 122221111 123345789999998 777777778899999997633211 1111 112345
Q ss_pred eEEEEeCC------Cc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeE
Q 023500 200 IFSVHWSR------EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI 272 (281)
Q Consensus 200 v~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v 272 (281)
+..+.++| ++ .+++...+..+.+|+...... . ..+.....+...+..++++|++ .++++...++.|
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-----~-~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I 315 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-----I-DVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTV 315 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE-----E-EEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCE
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE-----E-EEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEE
Confidence 56666666 22 222333455778886543211 1 1111123566778999999988 788899999999
Q ss_pred EEEEccc
Q 023500 273 KIWELAN 279 (281)
Q Consensus 273 ~iw~~~~ 279 (281)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-14 Score=112.88 Aligned_cols=239 Identities=12% Similarity=0.112 Sum_probs=158.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec------CCCCCeeEEEE-cCCCCEEEEecC-CCcEEEEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSW-NASGTLLATCGR-DKSVWIWE 75 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~------~h~~~v~~v~~-~~~~~~l~s~~~-d~~v~~w~ 75 (281)
.....++++|+|+++++...++.|.+|+..... +..+. +|......+++ .++++++++... ++.|.+|+
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcE---EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 457889999999999998889999999876432 22222 34457889999 467777777643 78999998
Q ss_pred ecCCCeeEEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 76 VMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
..+.. +..+. .+...+..+++.|+++++++...++.|.+|+.+.. .+..+.. .++...+..++++++
T Consensus 107 -~~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~--~~~~~~p~~i~~~~~ 174 (286)
T 1q7f_A 107 -QYGQF---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGC--SKHLEFPNGVVVNDK 174 (286)
T ss_dssp -TTSCE---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEEC--TTTCSSEEEEEECSS
T ss_pred -CCCcE---EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------EEEEeCC--CCccCCcEEEEECCC
Confidence 33432 22232 33456789999999998888888899999975321 1222211 123356789999999
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCce-eeecCCCC-cEEEEecccCCCc
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGI-IASGAADD-SVQFFVESKDDLI 231 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d~-~~~~~~~~~~~~~ 231 (281)
++.+++...++.|++|+.+... ...+.. .+...+..+++++++. +++...++ .+.+|+...
T Consensus 175 g~l~v~~~~~~~i~~~~~~g~~------------~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---- 238 (286)
T 1q7f_A 175 QEIFISDNRAHCVKVFNYEGQY------------LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---- 238 (286)
T ss_dssp SEEEEEEGGGTEEEEEETTCCE------------EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----
T ss_pred CCEEEEECCCCEEEEEcCCCCE------------EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----
Confidence 9888887888999999864221 111111 1124567788888775 45555565 899996432
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... +.. ......+.+++++|++. ++++. .|+.|++|++..
T Consensus 239 --~~~~~-~~~-~~~~~~~~~i~~~~~g~-l~vs~-~~~~v~v~~~~~ 280 (286)
T 1q7f_A 239 --QLISA-LES-KVKHAQCFDVALMDDGS-VVLAS-KDYRLYIYRYVQ 280 (286)
T ss_dssp --CEEEE-EEE-SSCCSCEEEEEEETTTE-EEEEE-TTTEEEEEECSC
T ss_pred --CEEEE-Ecc-cCCCCcceeEEECCCCc-EEEEC-CCCeEEEEEccc
Confidence 11111 111 12223477899999874 67664 589999999754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-14 Score=116.00 Aligned_cols=242 Identities=9% Similarity=0.021 Sum_probs=143.6
Q ss_pred EEEeeCC--CcEEEEec--CCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec-CCCeeEEeEeecCC
Q 023500 18 LATASFD--ATTCIWED--VGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-PGNEFECVSVLQGH 91 (281)
Q Consensus 18 l~tg~~d--~~i~lw~~--~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~-~~~~~~~~~~~~~~ 91 (281)
+..|+.. +.|.+|+. .++....+.... +....+..++|+|+|++|++++.+ .|.+|++. .+.. ........+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~~ 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPIG 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEECC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeecC
Confidence 4556653 46777764 455444333322 234567899999999999998887 99999986 4432 111111111
Q ss_pred ccceeEEEecCCCCe--EEEEe-------------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 92 AQDVKMVQWHPTMDV--LFSCS-------------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~--l~s~s-------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
. ....++|+|+++. +++++ .++++.+|++..... ....+......+...+..++|+|+++
T Consensus 83 g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 83 G-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp S-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred C-CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEeeEEeCCCCcceEEEECCCCC
Confidence 2 2566899999994 44553 689999998863211 11111110012345688999999999
Q ss_pred EEEEeeC-CCcEEEEeCC-ccccccCCCCcccceeEEeec-ccCcceEEEEeCCCc-eeee-cCCCCcEEEEecccCCCc
Q 023500 157 KLVSCSD-DLTIKIWGAD-ITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIAS-GAADDSVQFFVESKDDLI 231 (281)
Q Consensus 157 ~l~s~~~-d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~-~~~d~~~~~~~~~~~~~~ 231 (281)
+|+++.. ++.|.+|+.+ .++. ........ .+...+..+.|+|++ .++. ...++.+.+|+....
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~---------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~--- 225 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEV---------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA--- 225 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCE---------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT---
T ss_pred EEEEEcCCCCEEEEEEECCCCCE---------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC---
Confidence 8877653 6789999875 2221 11111111 124557889999988 3433 345778899865321
Q ss_pred CCccce--eeeeec----cCCCC------CeeEEE-EcCCCCeeEEEeCCCC-----eEEEEEcc
Q 023500 232 DGPSYK--MLLKKE----KAHDM------DVNSVQ-WSPGERRLLASASDDG-----MIKIWELA 278 (281)
Q Consensus 232 ~~~~~~--~~~~~~----~~h~~------~v~~~~-~~~~~~~~~~s~~~Dg-----~v~iw~~~ 278 (281)
.+.... ...... .+|.. .+..++ |+|+++.++++...++ .|++|++.
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 111100 011111 12222 478999 9999987665543333 89999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-14 Score=120.08 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=144.3
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEE--EcCCCCEEEE-------------------
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS--WNASGTLLAT------------------- 64 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s------------------- 64 (281)
+...+|+|||+.|+.++.++.+.+||..+++...+. ..+...+.... ++|++++++.
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY--QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee--echhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 446789999999999999999999999887654433 33444443333 4899998874
Q ss_pred ---ecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecCC------eEEEEeCCCCCCCCceeeee
Q 023500 65 ---CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDN------TIKVWWAEDTDSDNWHCVQT 134 (281)
Q Consensus 65 ---~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~------~v~~w~~~~~~~~~~~~~~~ 134 (281)
.+.+..|.+||+..+.. ..+..+...+..+.|+| ++..|+.++.++ .|.+++.+... ...
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~ 230 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGES----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------MRK 230 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCE----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------CEE
T ss_pred hhccCCcceEEEEECCCCce----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------eEE
Confidence 23457889999876642 22334455688999999 999888777643 66666654321 111
Q ss_pred eeeccCCcc-ccEEEEEEccCCCEEEEeeC-CC----cEEEEeCCccccccCCCCcccceeEEeecc-c-CcceEEEEeC
Q 023500 135 ISESNNGHS-STIWALSFNAKGDKLVSCSD-DL----TIKIWGADITRMQSGDGYASWRHLCTISGY-H-DRTIFSVHWS 206 (281)
Q Consensus 135 ~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~-d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~ 206 (281)
+.. .+. ..+....|+|+++.|+..+. ++ .|.+||++.++.. .+...... + ........|+
T Consensus 231 l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~---------~l~~~~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 231 VKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR---------QLTSMPACSHLMSNYDGSLMV 298 (388)
T ss_dssp SCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE---------EEEEECCEEEEEECTTSSEEE
T ss_pred eee---CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE---------EEEcCCCceeeeecCCCCeEc
Confidence 211 111 35778899999997755432 22 3889988654321 11111110 0 0000011456
Q ss_pred CCceeee--c--------CCCCcEEEEecccCCCcCCccceeeeeeccCCCC-----------CeeEEEEcCCCCeeEEE
Q 023500 207 REGIIAS--G--------AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM-----------DVNSVQWSPGERRLLAS 265 (281)
Q Consensus 207 ~~~~~~~--~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~s 265 (281)
|+|..+. . ..+..+.+|+..... ...+ ..|.. .+..++|+|+++.++.+
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~------~~~l----~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT------QHRV----ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTE------EEEE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCc------eEEe----ccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 6653222 1 345577888664321 1111 12222 46788999999887777
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
+..+|...||.+.
T Consensus 369 s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 369 SDVHGKPALYLAT 381 (388)
T ss_dssp ECTTSSCEEEEEE
T ss_pred ecCCCceeEEEEE
Confidence 7778888888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-15 Score=128.06 Aligned_cols=223 Identities=9% Similarity=0.061 Sum_probs=143.9
Q ss_pred cceeEEEEcCCCCEEEEeeC---CCcEEEEecCC---CceeeeeeecCCCCCeeEEEEcCCCCE--EEEecCCCcEEEEE
Q 023500 4 RTVRSCAWSPSGKLLATASF---DATTCIWEDVG---GDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSVWIWE 75 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~---d~~i~lw~~~~---~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~~d~~v~~w~ 75 (281)
..+..++|+|| +++++++. +....||.... +... .+..+ ..+...+|+|+|+. +++++.| .+.+||
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d 138 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYA 138 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEE
Confidence 47889999999 88887765 45567765432 2211 22222 23346688888753 4445554 455999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+..++. .... .+.. .++.|+|+++.+++++.+ ..|++|+++.... ..+ ..|...+..++|
T Consensus 139 ~~~g~~---~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~------~~l----~~~~~~~~~~~~ 202 (582)
T 3o4h_A 139 LDGGGL---RELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL------RVF----DSGEGSFSSASI 202 (582)
T ss_dssp EETTEE---EEEE-EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC------EEE----CCSSCEEEEEEE
T ss_pred ccCCcE---EEee-cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc------eEe----ecCCCccccceE
Confidence 976542 1222 2222 789999999999988887 7899998765431 122 256677899999
Q ss_pred ccCCCEEEEeeCCC--cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEE--------eCCCc-eeeecCCCCcE
Q 023500 152 NAKGDKLVSCSDDL--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH--------WSREG-IIASGAADDSV 220 (281)
Q Consensus 152 ~~~~~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~-~~~~~~~d~~~ 220 (281)
+|||+.|+++..++ .|.+||.+.++.. . ...+...+..+. |+|+| +++++..++.+
T Consensus 203 SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~ 269 (582)
T 3o4h_A 203 SPGMKVTAGLETAREARLVTVDPRDGSVE------------D-LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 269 (582)
T ss_dssp CTTSCEEEEEECSSCEEEEEECTTTCCEE------------E-CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred CCCCCEEEEccCCCeeEEEEEcCCCCcEE------------E-ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcE
Confidence 99999999888888 8888987654322 1 111223333333 88887 45667789999
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCe---EEEEEc
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM---IKIWEL 277 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~---v~iw~~ 277 (281)
++|.+ . . ... .....+.+++|+ +++ ++++++.+.. +.+|+.
T Consensus 270 ~l~~~-g-~---------~~~---~~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 270 AVFID-G-E---------RVE---APQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEET-T-E---------EEC---CCSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETT
T ss_pred EEEEE-C-C---------eec---cCCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcC
Confidence 99976 1 1 111 233568899999 665 5666666644 555554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-14 Score=125.61 Aligned_cols=250 Identities=10% Similarity=0.048 Sum_probs=153.1
Q ss_pred CccceeEEEEcCCCCEEEEe--eCCCcEEEEecCCCceeeeeeecCCCCCee---------EEEEc--CCCCE-EEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVK---------SVSWN--ASGTL-LATCGR 67 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg--~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~---------~v~~~--~~~~~-l~s~~~ 67 (281)
|...+..++|++++-+++.. +.++...||....+. ....+..|...+. ...|+ |||++ |+.++.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 56788999999887777777 668889999853222 2345566666666 66665 99998 766554
Q ss_pred -CCcEEEEEec--CCCeeEEeEeecC-----CccceeEEEecCCCCeEEEEecC----------CeEEEEeCCCCCCCCc
Q 023500 68 -DKSVWIWEVM--PGNEFECVSVLQG-----HAQDVKMVQWHPTMDVLFSCSYD----------NTIKVWWAEDTDSDNW 129 (281)
Q Consensus 68 -d~~v~~w~~~--~~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~l~s~s~d----------~~v~~w~~~~~~~~~~ 129 (281)
+..|.++++. .... ...+.. |...+..++|+|+++.|++++.| ..|++|+++.......
T Consensus 100 ~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp TTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 4555555543 1022 223344 56678899999999999988887 5899998865100000
Q ss_pred eeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC--------CcEEEEeCC-ccccccCCCCcccceeEEeecccCcce
Q 023500 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD--------LTIKIWGAD-ITRMQSGDGYASWRHLCTISGYHDRTI 200 (281)
Q Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 200 (281)
.....+. ..+...+..++|+|||+.|+..+.+ ..|.+||++ .+.. .....+...+...+
T Consensus 177 ~~~~~l~---~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---------~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 177 SAVRELS---DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---------ADTRTLLGGPEEAI 244 (662)
T ss_dssp GGSEESS---CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---------EEEEEEEEETTBCE
T ss_pred CceeEEE---ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---------cccEEeCCCCCceE
Confidence 0011111 0233567788999999999877754 368888875 2210 11122222345678
Q ss_pred EEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCC--------CeeEEEEcCCCCeeEEEeCCCCe
Q 023500 201 FSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM--------DVNSVQWSPGERRLLASASDDGM 271 (281)
Q Consensus 201 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~~~s~~~Dg~ 271 (281)
..+.|+|+| +++++..++..++|..... .+. ...+. ..+.. .+..++|+|+++ ++++++. +.
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~---~~~-~~~l~---~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~ 315 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPA---TGA-ATQLC---RREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GA 315 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTT---TCC-EEESS---CCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SS
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECC---CCc-eeecc---cccccccCccccccCceEeEeCCCE-EEEEEEc-Cc
Confidence 889999887 4555666775555544211 111 01111 11111 156788988765 6778888 99
Q ss_pred EEEEEc
Q 023500 272 IKIWEL 277 (281)
Q Consensus 272 v~iw~~ 277 (281)
++||.+
T Consensus 316 ~~l~~~ 321 (662)
T 3azo_A 316 AVLGIL 321 (662)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999954
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-14 Score=126.53 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=150.5
Q ss_pred cceeEEEEcCCCCEEE-----EeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc--------
Q 023500 4 RTVRSCAWSPSGKLLA-----TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-------- 70 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~-----tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-------- 70 (281)
..+..++|||||++|| .|+.+..|++||..+++......+... ....++|+|||+.|+.++.|..
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccC
Confidence 3578899999999998 555567899999988764201111111 1267899999999999988776
Q ss_pred -----EEEEEecCCCe-eEEeEeecCCccceeEEEecCCCCeEEEEecCC----eEEEEeCCCCCCCCceeeeeeeeccC
Q 023500 71 -----VWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNN 140 (281)
Q Consensus 71 -----v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----~v~~w~~~~~~~~~~~~~~~~~~~~~ 140 (281)
|++|++..+.. ...+.....|...+..+.|+|++++|+.++.++ .|.+|+.... .. ..+..
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---~~---~~l~~--- 269 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---DF---RLLVK--- 269 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---SC---EEEEE---
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---ce---EEeec---
Confidence 99999875542 123333344556788999999999888777665 5555533211 11 22221
Q ss_pred CccccEEEEEEccCCCEEEEee---CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCC
Q 023500 141 GHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAAD 217 (281)
Q Consensus 141 ~h~~~v~~~~~~~~~~~l~s~~---~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d 217 (281)
+...+....+ +++..++... .++.|.+|+.+..... .|+.+ ........+..+.++.+.++++...|
T Consensus 270 -~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l--~~~~~~~~l~~~~~~~~~lv~~~~~d 339 (695)
T 2bkl_A 270 -GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA------SWKEI--VPEDSSASLLSVSIVGGHLSLEYLKD 339 (695)
T ss_dssp -CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG------GCEEE--ECCCSSCEEEEEEEETTEEEEEEEET
T ss_pred -CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc------CCeEE--ecCCCCCeEEEEEEECCEEEEEEEEC
Confidence 2223344445 5666444433 2578888887543210 11111 11111445677778766678888889
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCC-CCCeeEEEEcCCCCeeEEEeC---CCCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~---~Dg~v~iw~~~~ 279 (281)
+..++|..... +. . ......+ ...+..++++|++..++++.+ .++.|++||+..
T Consensus 340 g~~~l~~~~~~----g~---~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 340 ATSEVRVATLK----GK---P-VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp TEEEEEEEETT----CC---E-EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CEEEEEEEeCC----CC---e-eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 98888866421 11 1 1111222 455777889998766554433 357899999754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-14 Score=114.38 Aligned_cols=202 Identities=12% Similarity=0.131 Sum_probs=132.7
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecC---CCCCeeEEEEcCCCCEEEEec------------CC
Q 023500 5 TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEG---HENEVKSVSWNASGTLLATCG------------RD 68 (281)
Q Consensus 5 ~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~~------------~d 68 (281)
.+..++|+|+|+++ ++++.++.|.+||..+++......... |...+.+++|+|+|++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47789999999765 566677899999987765422222211 122677899999999988886 67
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC------C--c--------eee
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD------N--W--------HCV 132 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~------~--~--------~~~ 132 (281)
+.|.+||+..... ...+.. ...+..+.|+|+++.++++ ++.|++|++...... . . +.+
T Consensus 115 ~~i~v~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 188 (337)
T 1pby_B 115 TRVALYDAETLSR---RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp CEEEEEETTTTEE---EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred ceEEEEECCCCcE---EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEE
Confidence 9999999865432 223322 3457889999999988877 689999998643110 0 0 000
Q ss_pred --------------------------------eeeeec---------cCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 133 --------------------------------QTISES---------NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 133 --------------------------------~~~~~~---------~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
..+... ...+...+..++|+|++++++++ ++.|.+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFD 266 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEE
Confidence 000000 00122345679999999998888 78999999
Q ss_pred CCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
.+..+. ...+. ....+.++.+++++ .+++++.++.+.+|+...
T Consensus 267 ~~~~~~-----------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 267 LEKNAS-----------IKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp TTTTEE-----------EEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred CCCCcC-----------cceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 764321 11221 23456788899876 466667789999997654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-13 Score=106.37 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=147.6
Q ss_pred ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 5 TVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 5 ~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
....++|+|+|+ +++++..++.|..|+..++ . ..+..+...+.+++++|+|+++++...++.|.+||...+....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 456789999998 7888888999999998765 3 3444567789999999999998888888899999986554221
Q ss_pred EeEeecCC-ccceeEEEecCCCCeEEEEec-----------------CCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 84 CVSVLQGH-AQDVKMVQWHPTMDVLFSCSY-----------------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 84 ~~~~~~~~-~~~v~~v~~~p~~~~l~s~s~-----------------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
......+. ...++.+++.|+++++++.+. .+.|..++.. . . ...+. .+...
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~---~~~~~----~~~~~ 173 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---T---LSAPI----RDRVK 173 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---C---EEEEE----CCCSS
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---C---EEEee----cCCCC
Confidence 11111111 234678999999998887321 2344444322 1 1 11111 23355
Q ss_pred EEEEEEccCCCEEEEeeCCCcEEEEeCCc-cccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 146 IWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
+..++|+|+++.|++.+.++.|.+|+.+. +... .....+ ......+..+.++++|.+..+. ++.+.+|+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~--------~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~ 243 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE--------YQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVLT 243 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE--------EEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEEC
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc--------CCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEEC
Confidence 68899999999887777888999998751 1110 001111 1233445567888888665555 77888886
Q ss_pred cccCCCcCCccceeeeeeccCCCCCeeEEEE-cCCCCeeEEEeCCCCeE
Q 023500 225 ESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW-SPGERRLLASASDDGMI 272 (281)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~s~~~Dg~v 272 (281)
... . .......+.. +++++| .|+++.++++ +.++..
T Consensus 244 ~~g------~----~~~~~~~~~~-~~~~~f~~~d~~~L~v~-t~~~l~ 280 (296)
T 3e5z_A 244 PDG------D----ELGRVLTPQT-TSNLCFGGPEGRTLYMT-VSTEFW 280 (296)
T ss_dssp TTS------C----EEEEEECSSC-CCEEEEESTTSCEEEEE-ETTEEE
T ss_pred CCC------C----EEEEEECCCC-ceeEEEECCCCCEEEEE-cCCeEE
Confidence 532 1 1222234445 889999 5777666544 445433
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-13 Score=119.56 Aligned_cols=247 Identities=11% Similarity=0.037 Sum_probs=152.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc---------
Q 023500 5 TVRSCAWSPSGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS--------- 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--------- 70 (281)
.+..++|+|||++||.++.++ .|.+||..+++.... .+. + ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-ccc-C-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 477899999999998766543 899999988764322 222 1 23668999999999998887766
Q ss_pred -------EEEEEecCCCee-EEeEeecCCccceeEEEecCCCCeEEEEec-----CCeEEEEeCCC------CCCCCcee
Q 023500 71 -------VWIWEVMPGNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-----DNTIKVWWAED------TDSDNWHC 131 (281)
Q Consensus 71 -------v~~w~~~~~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-----d~~v~~w~~~~------~~~~~~~~ 131 (281)
|++|++..+... ..+.....|...+..+.|+|++++|+.++. +..|++|++.. ... .
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~--- 278 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-K--- 278 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-C---
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-c---
Confidence 999998655421 122222334555788999999998887765 56899998764 210 1
Q ss_pred eeeeeeccCCccccEEEEEEccCCCEEEEeeCC----CcEEEEeCCccccccCCCCcccceeEEeecccC-cceEEEEeC
Q 023500 132 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHD-RTIFSVHWS 206 (281)
Q Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 206 (281)
...+. .+...+.. .|+|+++.|+..+.. ..|.+|+.+..... .++.+ ..... ..+..+.++
T Consensus 279 ~~~l~----~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l---~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 279 WVKLI----DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KWKVL---VPEHEKDVLEWVACV 344 (710)
T ss_dssp CEEEE----CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCEEE---ECCCSSCEEEEEEEE
T ss_pred eEEee----CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------cceec---cCCCCCCeEEEEEEE
Confidence 12222 22233333 478888877666543 25778876533210 11211 11122 356677887
Q ss_pred CC-ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC---CCCeEEEEEccc
Q 023500 207 RE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN 279 (281)
Q Consensus 207 ~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~---~Dg~v~iw~~~~ 279 (281)
++ .++++...++..++|..... .+.. ......+...+..++++|++..++++.+ ..+.|.+||+..
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~---~g~~----~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLA---TGAL----LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETT---TCCE----EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred cCCEEEEEEEECCEEEEEEEECC---CCCE----EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 44 46677777876666644310 1111 1122334566888999998866654433 357899999754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-14 Score=114.60 Aligned_cols=197 Identities=8% Similarity=0.062 Sum_probs=129.6
Q ss_pred ceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeec-CC-----CCCeeEEEEcCCCCEEEEecCC---------
Q 023500 5 TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLE-GH-----ENEVKSVSWNASGTLLATCGRD--------- 68 (281)
Q Consensus 5 ~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~-~h-----~~~v~~v~~~~~~~~l~s~~~d--------- 68 (281)
.+..++|+|+|+++ +++..++.|.+||..+++. +..+. ++ ...+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence 46789999999854 5666789999999877653 33333 22 2347889999999999988865
Q ss_pred ---CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc------
Q 023500 69 ---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN------ 139 (281)
Q Consensus 69 ---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~------ 139 (281)
+.|.+||+..+.....+..... ...+.+++|+|++. ++.++ +.|++|+...... ...+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~-----~~~~~~~~~~~~~~ 192 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY-----TVALPLRNWNRKGY 192 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE-----EEEECSTTCCCTTB
T ss_pred cCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCce-----eccccccccCCccc
Confidence 8999999876432222233332 33588999999999 55544 3499998765321 11110000
Q ss_pred ----------------------------------------------------------CCccccEEEEEEcc-CCCEEEE
Q 023500 140 ----------------------------------------------------------NGHSSTIWALSFNA-KGDKLVS 160 (281)
Q Consensus 140 ----------------------------------------------------------~~h~~~v~~~~~~~-~~~~l~s 160 (281)
..+...+..++|+| +++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~ 272 (349)
T 1jmx_B 193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG 272 (349)
T ss_dssp CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred cCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE
Confidence 00112456778889 9998888
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+ ++.|.+||.+..+. ...+. ....+..+.+++++ .+++++.++.+.+|+...
T Consensus 273 ~--~~~v~~~d~~~~~~-----------~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 273 V--LNRLAKYDLKQRKL-----------IKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp E--ESEEEEEETTTTEE-----------EEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred E--cCeEEEEECccCeE-----------EEEEc--CCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 8 88999999864321 11111 22345678899875 566677789999997643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-14 Score=123.66 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=110.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCC----------CcEEEEecCC------Cceeeeeeec-CCCCCeeEEEEcCCCCEEEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFD----------ATTCIWEDVG------GDYECVATLE-GHENEVKSVSWNASGTLLAT 64 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d----------~~i~lw~~~~------~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s 64 (281)
|...+..++|+|||+.|+.++.| ..|.+|+..+ +.. ..+. .+...+..++|+|||++|+.
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEE
Confidence 45567899999999999988877 5799999876 432 3344 55677888999999999987
Q ss_pred ecCC--------CcEEEEEec-CCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe--EEEEeCCCCCCCCceeee
Q 023500 65 CGRD--------KSVWIWEVM-PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT--IKVWWAEDTDSDNWHCVQ 133 (281)
Q Consensus 65 ~~~d--------~~v~~w~~~-~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~--v~~w~~~~~~~~~~~~~~ 133 (281)
++.+ ..|++||+. .+..........+|...+..+.|+|++++++++..++. |.+|+.+... . .
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~---~---~ 278 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA---A---T 278 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC---E---E
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc---e---e
Confidence 7754 379999997 34211223333445677899999999998888888884 4444432221 1 1
Q ss_pred eeeeccCCcccc--------EEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 134 TISESNNGHSST--------IWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 134 ~~~~~~~~h~~~--------v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+.. .+... +..++|+|++.+++++.. +.+++|.+
T Consensus 279 ~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 279 QLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred eccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 1111 11111 456889999999999988 99999944
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=114.83 Aligned_cols=237 Identities=10% Similarity=0.033 Sum_probs=141.2
Q ss_pred EEEcCCCCEEEEeeC-CCc--EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 9 CAWSPSGKLLATASF-DAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~-d~~--i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
.+|+|||++|+.++. ++. |.+||..+++. .....++...+..+.|+|+|++|+.++.++.|++||+..++..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~--- 115 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA--TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN--- 115 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE--EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce--EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---
Confidence 679999999988887 664 77778777653 3333455556667889999999999999999999999766532
Q ss_pred EeecCCccceeEEE--ecCCCCeEEEE----------------------ecCCeEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 86 SVLQGHAQDVKMVQ--WHPTMDVLFSC----------------------SYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 86 ~~~~~~~~~v~~v~--~~p~~~~l~s~----------------------s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
.....+...+.... ++|++..++.. ..+..|.+|++.... ...+. .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~------~~~l~----~ 185 (388)
T 3pe7_A 116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE------STVIL----Q 185 (388)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC------EEEEE----E
T ss_pred eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc------eEEee----c
Confidence 22333333343333 48998887642 234678888876542 12222 2
Q ss_pred ccccEEEEEEcc-CCCEEEEeeCCC------cEEEEeCCccccccCCCCcccceeEEeecccC-cceEEEEeCCCce-ee
Q 023500 142 HSSTIWALSFNA-KGDKLVSCSDDL------TIKIWGADITRMQSGDGYASWRHLCTISGYHD-RTIFSVHWSREGI-IA 212 (281)
Q Consensus 142 h~~~v~~~~~~~-~~~~l~s~~~d~------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~-~~ 212 (281)
+...+..+.|+| +++.|+.+..++ .|.+++.+..... .+..... ..+....|+|+|. ++
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~------------~l~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR------------KVKTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE------------ESCCCCTTEEEEEEEECTTSSCEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE------------EeeeCCCCcccccceECCCCCEEE
Confidence 345678899999 998888776532 5666665432211 1111111 2466778999874 32
Q ss_pred e-cCC-C---CcEEEEecccCCCcCCccceeeeeeccCCC---CCeeEEEEcCCCCeeEEEe--------CCCCeEEEEE
Q 023500 213 S-GAA-D---DSVQFFVESKDDLIDGPSYKMLLKKEKAHD---MDVNSVQWSPGERRLLASA--------SDDGMIKIWE 276 (281)
Q Consensus 213 ~-~~~-d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~s~--------~~Dg~v~iw~ 276 (281)
. ... + ..+.+|+...... .. +.....+. .....+.|+|+++.++++. ..+..|++||
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~------~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 254 YVSYLKGSPDRFIYSADPETLEN------RQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp EEEEETTCCCEEEEEECTTTCCE------EE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred EEecCCCCCcceEEEEecCCCce------EE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 2 222 1 2377886643211 11 11111100 0012247999988765443 4567899999
Q ss_pred ccc
Q 023500 277 LAN 279 (281)
Q Consensus 277 ~~~ 279 (281)
+..
T Consensus 327 ~~~ 329 (388)
T 3pe7_A 327 MKN 329 (388)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-13 Score=108.95 Aligned_cols=221 Identities=12% Similarity=0.174 Sum_probs=136.2
Q ss_pred ceeEEEEcCCCCEEEEeeCC---Cc--EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----------
Q 023500 5 TVRSCAWSPSGKLLATASFD---AT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----------- 68 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d---~~--i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----------- 68 (281)
.+..++|+|||+.||..+.+ +. |.+|+..+++...+.. +.. +..++|+|+|+.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 36678999999999887754 33 6677776664333322 233 8999999999988877632
Q ss_pred ----------------CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-------eEEEEeCCCCC
Q 023500 69 ----------------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-------TIKVWWAEDTD 125 (281)
Q Consensus 69 ----------------~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-------~v~~w~~~~~~ 125 (281)
..|.+|++..+.. +..+.. . .+..+.|+|++ ++++++.+. ...+|.+. ..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~---~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~ 208 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEV---IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DG 208 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEE---EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TT
T ss_pred ccceeecCcccccCccceEEEEECCCCeE---EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CC
Confidence 5688888865432 122222 2 68899999999 777776652 44555444 11
Q ss_pred CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC--------CcEEEEeCCccccccCCCCcccceeEEeecccC
Q 023500 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD--------LTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
....+.. + ..+..+ +|+++.|+.++.+ ..|.+|| . ++. ..+...+.
T Consensus 209 -----~~~~l~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~~------------~~l~~~~~ 262 (347)
T 2gop_A 209 -----KEEKMFE----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G-KEV------------MGILDEVD 262 (347)
T ss_dssp -----EEEEEEE----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S-SCE------------EESSTTCC
T ss_pred -----ceEEecc----C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C-Cce------------EeccccCC
Confidence 1122221 2 334333 8999988777644 3566666 2 111 11111234
Q ss_pred cceEE-EEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeE-EEE
Q 023500 198 RTIFS-VHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI-KIW 275 (281)
Q Consensus 198 ~~v~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v-~iw 275 (281)
..+.. +.|+ +++++++..++..++| ... . .. ..+ ..+...|.+++|+| . ++++++.++.. +||
T Consensus 263 ~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~-g----~~-~~~----~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 263 RGVGQAKIKD-GKVYFTLFEEGSVNLY-IWD-G----EI-KPI----AKGRHWIMGFDVDE--I-VVYLKETATRLRELF 327 (347)
T ss_dssp SEEEEEEEET-TEEEEEEEETTEEEEE-EES-S----SE-EEE----ECSSSEEEEEEESS--S-EEEEEECSSSCCEEE
T ss_pred cccCCccEEc-CcEEEEEecCCcEEEE-EcC-C----ce-EEE----ecCCCeEEeeeeeC--c-EEEEEcCCCChHHhe
Confidence 55664 7888 7777788888999999 752 1 11 111 23456789999998 3 55666666654 777
Q ss_pred Ec
Q 023500 276 EL 277 (281)
Q Consensus 276 ~~ 277 (281)
.+
T Consensus 328 ~~ 329 (347)
T 2gop_A 328 TW 329 (347)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=123.01 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=106.0
Q ss_pred EEEEcCCCCEEEEeeCC---------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 8 SCAWSPSGKLLATASFD---------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d---------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.++|||||++|+.++.+ +.+.+||..+++. ..+..|.+.+...+|||||++|+.++ |+.|.+|++..
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~---~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL---ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE---CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE---EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 47899999999998876 5567999988753 34566788899999999999998885 68999999876
Q ss_pred CCeeEEeEeecCCcc-----------------ceeEEEecCCCCeEEEEecCCe--------------------------
Q 023500 79 GNEFECVSVLQGHAQ-----------------DVKMVQWHPTMDVLFSCSYDNT-------------------------- 115 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~-----------------~v~~v~~~p~~~~l~s~s~d~~-------------------------- 115 (281)
+.... + +..++.. ....+.|+|+++.|+.++.|.+
T Consensus 142 ~~~~~-l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp 219 (740)
T 4a5s_A 142 LPSYR-I-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP 219 (740)
T ss_dssp SCCEE-C-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred CceEE-E-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence 54321 1 1122221 1235899999999988765433
Q ss_pred ----------EEEEeCCC---CCCCCceeeeeeeec--cCCccccEEEEEEccCCCEEEEee----CCCcEEEEeCCccc
Q 023500 116 ----------IKVWWAED---TDSDNWHCVQTISES--NNGHSSTIWALSFNAKGDKLVSCS----DDLTIKIWGADITR 176 (281)
Q Consensus 116 ----------v~~w~~~~---~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~----~d~~i~~w~~~~~~ 176 (281)
|++|+++. .... ....+... ..+|...+..++|+|+++.++... .+..|.+||.+.++
T Consensus 220 ~~G~~~~~~~l~v~d~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 220 KAGAVNPTVKFFVVNTDSLSSVTNA---TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp BTTSCCCEEEEEEEETTSCCSSSCC---CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCcCcCCeeEEEEEECCCCCCCCcc---eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 44555443 2100 01111100 013667788999999998665543 23468889876543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-12 Score=99.88 Aligned_cols=238 Identities=8% Similarity=-0.013 Sum_probs=153.9
Q ss_pred ceeEEEEcCCCCEEE-EeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 5 TVRSCAWSPSGKLLA-TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~-tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
....++++++|++++ +...++.|.+|+..+..... ....+...+.+++++|+|+++++.. ++.|.+|+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--
Confidence 567899999999888 55778899999865543211 1122335678899999999777766 88999998653321
Q ss_pred EeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..+. ........+.+.|++.++++...++.|.+|+..... ... . .......+..+++++++..+++..
T Consensus 100 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~-~---~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 100 --TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTV-L---PFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp --EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----CEE-C---CCCSCCSCCCEEECTTCCEEEEEG
T ss_pred --eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----eEe-e---ccccCCCceeEEEeCCCCEEEEEC
Confidence 1121 223567899999999988887788999998543221 011 0 011223467899999998777777
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
.++.|..|+.+...... ........+..+.+++++. +++...++.+..|+...... ..
T Consensus 169 ~~~~i~~~~~~~~~~~~------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~ 227 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVV------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TV 227 (270)
T ss_dssp GGTEEEEECTTTCCEEE------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EE
T ss_pred CCCEEEEEecCCCceEe------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------ee
Confidence 78899999875332110 0001114466788888764 55555677888886543210 11
Q ss_pred eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 242 ~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
....+...+.++++++++. ++++...++.|+++++..+
T Consensus 228 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence 1112335688999999875 7888888999999987643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-11 Score=98.50 Aligned_cols=241 Identities=10% Similarity=0.057 Sum_probs=145.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----CcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----KSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~~~ 79 (281)
..+..++|+|+|++++++..++.|.+||..+++.... ...+...+.+++++|+|+++++...+ +.|.+||....
T Consensus 45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 4467899999999888888899999999877654322 22456789999999999988887766 68999987644
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEec------CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
.... ......+...+..+.++|++.++++... .+.|..++.+... ...+.. +...+..++|+|
T Consensus 123 ~~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~----~~~~~~~i~~~~ 191 (333)
T 2dg1_A 123 NLQD-IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQ----NISVANGIALST 191 (333)
T ss_dssp SCEE-EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEE----EESSEEEEEECT
T ss_pred EEEE-EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE------EEEeec----CCCcccceEECC
Confidence 3211 1111123456889999999988877654 2344444332211 111111 123467899999
Q ss_pred CCCEE-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceee-ecCCCCcEEEEecccCCCc
Q 023500 154 KGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 154 ~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~ 231 (281)
+++.| ++...++.|.+|+.+..... .................+..+.+++++.+. +...++.+.+|+...
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~~g~~----~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g---- 263 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALEDDGVT----IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG---- 263 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSSS----EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS----
T ss_pred CCCEEEEEeCCCCeEEEEEecCCCcC----cccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC----
Confidence 99855 44556788999987421000 000000000000011356678888877544 444567888886532
Q ss_pred CCccceeeeeec---cCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 232 DGPSYKMLLKKE---KAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 232 ~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
..... +... .+|...+.+++|+|++..++++...
T Consensus 264 --~~~~~-~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 264 --YPIGQ-ILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp --CEEEE-EECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred --CEEEE-EEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 11111 1111 1233368899999987666666554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=106.09 Aligned_cols=246 Identities=9% Similarity=0.053 Sum_probs=155.3
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
...|.+++|+|++..++..+.++.++.|. . .....+.++...+.+++|+|+|++++++..++.|.+||...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~- 78 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI- 78 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-
T ss_pred ccccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-
Confidence 45678899999988877778888999983 1 23445556667789999999999888888899999999765442
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecC----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
......+...+.++.++|+++++++...+ +.|.+|+.+.... . ..+.. ..+...+..+.++|++..+
T Consensus 79 --~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~--~~~~~--~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 79 --KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---Q--DIIED--LSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp --EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---E--EEECS--SSSCCCEEEEEECTTSCEE
T ss_pred --EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---E--EEEcc--CccCCcccceEECCCCCEE
Confidence 11222345678999999999988887766 6899997654321 1 01110 1233568899999999877
Q ss_pred EEeeC------CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCC
Q 023500 159 VSCSD------DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 159 ~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~ 230 (281)
++... .+.|..++.+.... .... . ....+..+.+++++ ++++...++.+.+|+......
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~--~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTV---------TPII--Q--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCE---------EEEE--E--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred EEeccccccCCCceEEEEeCCCCEE---------EEee--c--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 76653 23444454332111 1110 1 12235678888886 345555677888887642111
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...............+ ..+..+++++++. ++++...++.|.+|+..
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence 0000000111111122 3578899999875 66666667899999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-11 Score=96.38 Aligned_cols=198 Identities=15% Similarity=0.208 Sum_probs=134.1
Q ss_pred cceeEEEE-cCCCCEEEEeeC-CCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 4 RTVRSCAW-SPSGKLLATASF-DATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 4 ~~i~~~~~-~~~~~~l~tg~~-d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
..+..+++ .++++++++... ++.|.+|+.. +.. +..+. .+.....+++++|+|+++++...++.|.+|+.. +.
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQF--VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCE--EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcE--EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 45778999 578888877643 7899999844 332 33332 344578899999999988888888999999853 32
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
... .....++...+..++++|+++++++.+.++.|++|+.+.. .+..+. ..++...+..+++++++.++++
T Consensus 153 ~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~--~~g~~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 153 VLH-KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIG--GEGITNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEE-EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEES--CTTTSCSEEEEEECTTCCEEEE
T ss_pred EEE-EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEc--cCCccCCCcEEEECCCCCEEEE
Confidence 211 1111234456889999999998888888999999986432 122221 1223356789999999988888
Q ss_pred eeCCC-cEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 161 CSDDL-TIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 161 ~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
...++ .|.+|+.+... +..+.. .....+..+.+++++.++.+..++.+++|...
T Consensus 224 ~~~~~~~i~~~~~~g~~------------~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 224 DNHNNFNLTIFTQDGQL------------ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp ECSSSCEEEEECTTSCE------------EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred eCCCCEEEEEECCCCCE------------EEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence 87775 99999864211 111111 11234668888888866555678999999653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=110.45 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=136.7
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeE-------------------EEEcCCCCEEEEe----
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS-------------------VSWNASGTLLATC---- 65 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~---- 65 (281)
+.|+|||++|+.++.++.|.+|+..+++...+.. .+...... +.|+|+++.++.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 6799999999999999999999987765433332 22222222 3467777766544
Q ss_pred -cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeee
Q 023500 66 -GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 66 -~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
..+..|.+||+..+... .+..+...+..+.|+| ++..++.++.+ ..|.+|+.+... ...+..
T Consensus 164 ~~~~~~l~~~d~~~g~~~----~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~ 233 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELE----VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------VRKIKE 233 (396)
T ss_dssp TCCCEEEEEEETTTCCEE----EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------CEESSC
T ss_pred CCCcceEEEEECCCCcEE----eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------eeEeec
Confidence 45678999998765432 1223456688999999 78767665544 357777664321 111211
Q ss_pred ccCCccccEEEEEEccCCCEEEEeeCC-----CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-Ccee
Q 023500 138 SNNGHSSTIWALSFNAKGDKLVSCSDD-----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGII 211 (281)
Q Consensus 138 ~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 211 (281)
......+..+.|+|+++.|+..+.+ +.|.+||...++. +.+.... . .. ..|++ ++.+
T Consensus 234 --~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------~~l~~~~----~-~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 234 --HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN---------EEVMVMP----P-CS-HLMSNFDGSL 296 (396)
T ss_dssp --CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE---------EEEEECC----S-EE-EEEECSSSSE
T ss_pred --cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe---------EEeeeCC----C-CC-CCccCCCCce
Confidence 0012357789999999977766543 3489998764321 1111111 1 11 56777 6643
Q ss_pred -eecC----------------CCCcEEEEecccCCCcCCccceeeeeeccCCCC-----------CeeEEEEcCCCCeeE
Q 023500 212 -ASGA----------------ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM-----------DVNSVQWSPGERRLL 263 (281)
Q Consensus 212 -~~~~----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~ 263 (281)
+..+ .+..+.+|+...... ..+. .+.. .+..++|+|+++.++
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 366 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA------QKLC----KHSTSWDVLDGDRQITHPHPSFTPNDDGVL 366 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC------CEEE----ECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce------EEcc----CCCCccccccccccCCCCCceEccCCCeEE
Confidence 3322 235677776543211 1111 1222 255678999998776
Q ss_pred EEeCCCCeEEEEEcc
Q 023500 264 ASASDDGMIKIWELA 278 (281)
Q Consensus 264 ~s~~~Dg~v~iw~~~ 278 (281)
.++..++...||.+.
T Consensus 367 ~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 367 FTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEECTTSSCEEEEEE
T ss_pred EEecCCCCceEEEEE
Confidence 666667776777653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-13 Score=110.09 Aligned_cols=234 Identities=7% Similarity=-0.001 Sum_probs=135.5
Q ss_pred eeEEEEcCCCCEEEEeeCC---CcEEEEecCCCceeeeeeecCCCCC-eeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 6 VRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENE-VKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d---~~i~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
+..++|+|||++|+..... ..|.+|+..+++.. .+..+... ...+.|+|+|++|+.++.++.|++|++..+..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 6678899999998766543 36778887766432 22223333 33478999999999999999999999876543
Q ss_pred eEEeEeecCCccceeE-------------------EEecCCCCeEEEE-----ecCCeEEEEeCCCCCCCCceeeeeeee
Q 023500 82 FECVSVLQGHAQDVKM-------------------VQWHPTMDVLFSC-----SYDNTIKVWWAEDTDSDNWHCVQTISE 137 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~-------------------v~~~p~~~~l~s~-----s~d~~v~~w~~~~~~~~~~~~~~~~~~ 137 (281)
. .+ ...+...... +.|+|+++.++.. ..+..|.+|++.... ...+.
T Consensus 115 ~-~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~------~~~~~- 184 (396)
T 3c5m_A 115 Q-VI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE------LEVIH- 184 (396)
T ss_dssp E-EE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC------EEEEE-
T ss_pred E-EE--EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc------EEeec-
Confidence 2 12 2222211111 3567777765543 356688889876532 11121
Q ss_pred ccCCccccEEEEEEcc-CCCEEEEeeCC------CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce
Q 023500 138 SNNGHSSTIWALSFNA-KGDKLVSCSDD------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 210 (281)
Q Consensus 138 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (281)
.+...+..+.|+| ++..|+..+.+ ..|.+|+.+..... .+. .......+..+.|+|++.
T Consensus 185 ---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---------~l~--~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 185 ---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR---------KIK--EHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp ---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE---------ESS--CCCTTEEEEEEEECTTSS
T ss_pred ---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee---------Eee--ccCCCccccceEECCCCC
Confidence 2345678899999 78767666543 34666765432211 110 000123466788998874
Q ss_pred -eeecCCC-----CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC-CCCeeEEEeC----------------
Q 023500 211 -IASGAAD-----DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASAS---------------- 267 (281)
Q Consensus 211 -~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~s~~---------------- 267 (281)
++..+.+ +.+.+|+..... . .. +.... ... +.|+| +++. ++.++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~-----~-~~-l~~~~----~~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLE-----N-EE-VMVMP----PCS-HLMSNFDGSL-MVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCC-----E-EE-EEECC----SEE-EEEECSSSSE-EEEEECCC----------CCC
T ss_pred EEEEEecCCCCccceEEEEECCCCC-----e-EE-eeeCC----CCC-CCccCCCCce-EEEecCCcceeeccccccccC
Confidence 3333222 337778654321 1 11 11111 123 88999 8874 44432
Q ss_pred CCCeEEEEEccc
Q 023500 268 DDGMIKIWELAN 279 (281)
Q Consensus 268 ~Dg~v~iw~~~~ 279 (281)
.+..|++||+..
T Consensus 318 ~~~~i~~~d~~~ 329 (396)
T 3c5m_A 318 NDPFLYVLNTKA 329 (396)
T ss_dssp CCCEEEEEETTT
T ss_pred CCCcEEEEeccc
Confidence 347899999753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=109.86 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=148.1
Q ss_pred ceeEEEEcCCCCEEEEeeCC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCc---------
Q 023500 5 TVRSCAWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS--------- 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~--------- 70 (281)
.+..++|+|||++||.++.+ ..|++||..+++.... .+ +...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE--EEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC--CCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 56788999999999877644 3599999988764321 11 1222357899999 98888776654
Q ss_pred -----EEEEEecCCCee-EEeEeecCCccceeEEEecCCCCeEEEEecCC-----eEEEEeCCCCCCCCceeeeeeeecc
Q 023500 71 -----VWIWEVMPGNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 71 -----v~~w~~~~~~~~-~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-----~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
|++|++..+... ..+.....+...+..+.|+|++++|+..+.++ .|++|+++.... . +...+..
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~--~~~~l~~-- 314 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-G--PVTALIP-- 314 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-C--CCEEEEC--
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-c--ccEEecC--
Confidence 888887544321 12222233333578999999999888777544 888888754310 1 0122221
Q ss_pred CCccccEEEEEEccCCCEEEEeeCC----CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
+...+... ++|+++.|+..+.+ +.|.+|+.+... ..++.+ ...+...+..+.++.+.++++..
T Consensus 315 --~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l---~~~~~~~l~~~~~~~~~lv~~~~ 381 (741)
T 1yr2_A 315 --DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTV---VPESKDNLESVGIAGNRLFASYI 381 (741)
T ss_dssp --SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEE---ECCCSSEEEEEEEEBTEEEEEEE
T ss_pred --CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEE---ecCCCCeEEEEEEECCEEEEEEE
Confidence 12222333 34888888777654 347778765310 011111 12234456667777666788888
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEe---CCCCeEEEEEccc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA---SDDGMIKIWELAN 279 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~---~~Dg~v~iw~~~~ 279 (281)
.|+..++|..... +. ........+...+..++++|+++.++++. ...+.|.+||+..
T Consensus 382 ~dg~~~l~~~~~~----g~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 382 HDAKSQVLAFDLD----GK---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ETTEEEEEEEETT----SC---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ECCEEEEEEEeCC----CC---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 8888888865421 11 11111111345688899999876555433 3457899999754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-11 Score=98.20 Aligned_cols=218 Identities=11% Similarity=0.190 Sum_probs=130.4
Q ss_pred cceeEEEEcCCCCEEEEee---------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC---C--
Q 023500 4 RTVRSCAWSPSGKLLATAS---------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---K-- 69 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~---------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~-- 69 (281)
..+...++ ||+.+|... .++.|.+|+..+++... + ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 44667778 898877542 25678899887765332 2 457889999999998877654 3
Q ss_pred cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC---------------------------CeEEEEeCC
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---------------------------NTIKVWWAE 122 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d---------------------------~~v~~w~~~ 122 (281)
.|.+|++..++. ..... +.. +..+.|+|+++.|+.++.+ ..|.+|++.
T Consensus 86 ~l~~~~~~~g~~---~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETLSS---KKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTTEE---EEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCCce---EEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 366667654432 22222 223 8899999999988877643 467888775
Q ss_pred CCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-------cEEEEeCCccccccCCCCcccceeEEeecc
Q 023500 123 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-------TIKIWGADITRMQSGDGYASWRHLCTISGY 195 (281)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
... .+..+.. . .+..+.|+|++ .++++..++ ...+|..+.++ .+.+ ..
T Consensus 161 ~~~-----~~~~l~~-----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~---------~~~l---~~- 215 (347)
T 2gop_A 161 SEE-----VIEEFEK-----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK---------EEKM---FE- 215 (347)
T ss_dssp TTE-----EEEEEEE-----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE---------EEEE---EE-
T ss_pred CCe-----EEeeecC-----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc---------eEEe---cc-
Confidence 432 1122221 1 46688999999 877776542 45666443111 1111 11
Q ss_pred cCcceEEEEeCCCce-eeecCCC--------CcEEEEecccCCCcCCccceeeeeeccCCCCCeeE-EEEcCCCCeeEEE
Q 023500 196 HDRTIFSVHWSREGI-IASGAAD--------DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLAS 265 (281)
Q Consensus 196 ~~~~v~~~~~~~~~~-~~~~~~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~s 265 (281)
+ ..+..+ +|+|. ++..+.+ ..+.+++ .. ........|...+.. +.|+ ++ ++++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----------~~~~l~~~~~~~~~~~~~~s-dg--~~~~ 278 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GK----------EVMGILDEVDRGVGQAKIKD-GK--VYFT 278 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SS----------CEEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CC----------ceEeccccCCcccCCccEEc-Cc--EEEE
Confidence 1 223333 55552 3333322 2455553 11 111222345667876 8998 65 7788
Q ss_pred eCCCCeEEEEEcc
Q 023500 266 ASDDGMIKIWELA 278 (281)
Q Consensus 266 ~~~Dg~v~iw~~~ 278 (281)
++.|+.++|| +.
T Consensus 279 ~~~~~~~~l~-~~ 290 (347)
T 2gop_A 279 LFEEGSVNLY-IW 290 (347)
T ss_dssp EEETTEEEEE-EE
T ss_pred EecCCcEEEE-Ec
Confidence 9999999999 75
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-10 Score=93.44 Aligned_cols=245 Identities=6% Similarity=0.084 Sum_probs=149.3
Q ss_pred ceeEEEEcCCCCEEEE-------eeCCCcEEEEecCCCceeeeee--ecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEE
Q 023500 5 TVRSCAWSPSGKLLAT-------ASFDATTCIWEDVGGDYECVAT--LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIW 74 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~t-------g~~d~~i~lw~~~~~~~~~~~~--~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w 74 (281)
....++|+++|+++++ +..++.|.+|+..+++...... ..++...+.+++++++ |+++++... +.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEEE
Confidence 3468899999999888 6778999999876665432211 1124567899999999 766665544 478889
Q ss_pred EecCCCeeEEe-Eee-cC-CccceeEEEecCCCCeEEEEecC---------------CeEEEEeCCCCCCCCceeeeeee
Q 023500 75 EVMPGNEFECV-SVL-QG-HAQDVKMVQWHPTMDVLFSCSYD---------------NTIKVWWAEDTDSDNWHCVQTIS 136 (281)
Q Consensus 75 ~~~~~~~~~~~-~~~-~~-~~~~v~~v~~~p~~~~l~s~s~d---------------~~v~~w~~~~~~~~~~~~~~~~~ 136 (281)
+.. +.. ... ... .. ....+..+.+.|+++++++...+ +.|..++.. . . ...+.
T Consensus 98 d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~---~~~~~ 168 (314)
T 1pjx_A 98 QTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q---MIQVD 168 (314)
T ss_dssp ETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C---EEEEE
T ss_pred eCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C---EEEec
Confidence 876 432 111 110 11 12357899999999888877665 456555432 1 1 11111
Q ss_pred eccCCccccEEEEEEc----cCCCEEE-EeeCCCcEEEEeCCc-cccccCCCCcccceeEEeecccC-cceEEEEeCCCc
Q 023500 137 ESNNGHSSTIWALSFN----AKGDKLV-SCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHD-RTIFSVHWSREG 209 (281)
Q Consensus 137 ~~~~~h~~~v~~~~~~----~~~~~l~-s~~~d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 209 (281)
.+...+..++|+ |+++.|+ +...++.|.+|+.+. +... .......+. .+. ..+..+.++++|
T Consensus 169 ----~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~-~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 169 ----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE------NKKVWGHIP-GTHEGGADGMDFDEDN 237 (314)
T ss_dssp ----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE------EEEEEEECC-CCSSCEEEEEEEBTTC
T ss_pred ----cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc------cceEEEECC-CCCCCCCCceEECCCC
Confidence 112345788999 9986554 445678899998641 1100 000111111 111 346678888877
Q ss_pred eee-ecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 210 IIA-SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 210 ~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+. +...++.+..|+...... ......+...+.+++|+|++..++++...++.|..|++..
T Consensus 238 ~l~v~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDGGQP---------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEETTTEEEEECTTCBSC---------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCEEEEEcCCCCcE---------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 544 444677888886542111 1111234467899999998876777877788999998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-09 Score=85.50 Aligned_cols=238 Identities=10% Similarity=0.011 Sum_probs=156.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..+.+++++++|+++++...++.|.+|+.. +..... ....+...+.+++++++|.+.++...++.|..|+.. +. ..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~ 90 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IK 90 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EE
Confidence 568899999999988877668899999877 543322 222345678999999999988888778889889864 22 21
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
. ..+......+..+.+.|++.++++...++.|..|+.. .. ...+.. ..+...+..+++++++..+++...
T Consensus 91 ~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~------~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 91 E-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK------IREYEL--PNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp E-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC------EEEEEC--SSTTCCEEEEEECTTSCEEEEETT
T ss_pred E-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC------EEEecC--CCCCCCCceEEEcCCCCEEEEeCC
Confidence 1 2222344568899999999888887778899998762 11 111111 112345789999999988777777
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
++.|..|+.. +... .. ... .....+..+.+++++. +++...++.+..++. .. .. .. . .
T Consensus 161 ~~~i~~~~~~-g~~~---------~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-----~~-~~-~-~ 219 (299)
T 2z2n_A 161 NNAIGRITES-GDIT---------EF-KIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG-----EI-TE-F-K 219 (299)
T ss_dssp TTEEEEECTT-CCEE---------EE-ECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC-----CE-EE-E-E
T ss_pred CCEEEEEcCC-CcEE---------Ee-eCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CC-----cE-EE-E-E
Confidence 7889888762 2111 00 001 1223466788887664 444445677888855 21 11 11 1 1
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
...+...+.++++.+++. ++++...++.|..|+.
T Consensus 220 ~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred CCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence 123445688999999875 6666666788988886
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-11 Score=105.76 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=138.3
Q ss_pred cCCCCEEEEeeCCC---cEEEEec--CCCceeeeeee----cCCCCCeeEEEEcCCCCEEE-----EecCCCcEEEEEec
Q 023500 12 SPSGKLLATASFDA---TTCIWED--VGGDYECVATL----EGHENEVKSVSWNASGTLLA-----TCGRDKSVWIWEVM 77 (281)
Q Consensus 12 ~~~~~~l~tg~~d~---~i~lw~~--~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~-----s~~~d~~v~~w~~~ 77 (281)
+|+|++++-...++ .-.||.. .++....+... ++|...+..++|||||++|+ +|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47898877666554 3455543 33333323221 24666789999999999998 56667899999997
Q ss_pred CCCeeEEeEeecCCccce--eEEEecCCCCeEEEEecCCe-------------EEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 78 PGNEFECVSVLQGHAQDV--KMVQWHPTMDVLFSCSYDNT-------------IKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v--~~v~~~p~~~~l~s~s~d~~-------------v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
.++... ..+...+ ..+.|+|+++.|+.++.|.. |++|++....... ..+. ....|
T Consensus 156 tg~~~~-----~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~----~~~~~ 225 (695)
T 2bkl_A 156 SGEWSK-----VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVH----ERTGD 225 (695)
T ss_dssp TCCBCS-----SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEE----CCCCC
T ss_pred CCCCcC-----CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEE----ecCCC
Confidence 665310 1122223 68899999999999998876 9999887543211 1111 11235
Q ss_pred cccEEEEEEccCCCEEEEeeCCC----cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC---
Q 023500 143 SSTIWALSFNAKGDKLVSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA--- 215 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--- 215 (281)
...+..+.|+|++++|+..+.++ .|.+|+..... ++.+ .. +........+.++.+++...
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---------~~~l---~~-~~~~~~~~~~~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---------FRLL---VK-GVGAKYEVHAWKDRFYVLTDEGA 292 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS---------CEEE---EE-CSSCCEEEEEETTEEEEEECTTC
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc---------eEEe---ec-CCCceEEEEecCCcEEEEECCCC
Confidence 56788999999999888777655 45555432111 1111 11 11122222333333444333
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCC-CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
.++.+..|+...... .....+. ..+ ...+..++|+ +..++++...|+..+||.+.
T Consensus 293 ~~~~l~~~d~~~~~~---~~~~~l~---~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 293 PRQRVFEVDPAKPAR---ASWKEIV---PEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp TTCEEEEEBTTBCSG---GGCEEEE---CCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEeCCCCCc---cCCeEEe---cCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 246677775533210 0011121 122 3457788888 34688899999998888654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-12 Score=102.93 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=121.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---------eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGD---------YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 75 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~ 75 (281)
.++.+++++...++++|+.++ +.+|+..... ++.... ..+.+ |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 588999999999999999885 5569743221 222222 23666 999999 99999998 889999999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+....... ....|...+.++.+.+. .+++++.||.+.+|++..... . . +...|.|++|+|.|
T Consensus 113 v~sl~~~~---~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-----~-~-------~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 113 LEELSEFR---TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-----K-Q-------LAQNVTSFDVTNSQ 174 (388)
T ss_dssp SSSTTCEE---EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-----E-E-------EEESEEEEEECSSE
T ss_pred chhhhccC---ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-----c-c-------ccCCceEEEEcCCc
Confidence 87654322 23345556777776654 388899999999999875431 1 1 33579999999999
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee-----c---ccCcceEEEEeCCCceee
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-----G---YHDRTIFSVHWSREGIIA 212 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~v~~~~~~~~~~~~ 212 (281)
++.|..||++++|+.+..... ....+. . .++..|.++.|.+++.++
T Consensus 175 --~~vg~~dg~i~~~~~~~~~~~---------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~fl 228 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRNGEME---------KQFEFSLPSELEELPVEEYSPLSVTILSPQDFL 228 (388)
T ss_dssp --EEEEETTSCEEEEEEETTEEE---------EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred --eEEEEcCCcEEEEcCCCcccc---------ccceecCCcccccccCCCeeEEEEEEecCCeEE
Confidence 678899999999977543210 011110 0 146789999999887544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-10 Score=93.77 Aligned_cols=145 Identities=10% Similarity=0.105 Sum_probs=93.3
Q ss_pred CCCEEEEee------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEEec
Q 023500 14 SGKLLATAS------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVM 77 (281)
Q Consensus 14 ~~~~l~tg~------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~~~ 77 (281)
+++++.... .|+.+.+||..+++. +..+..+..+ .++|+|+|+++++++ .+++|.+||+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~--~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF--LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE--EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE--EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 556554433 477999999877653 4555555555 899999999998875 36789999986
Q ss_pred CCCeeEEeEeecC---CccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeee-eeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVLQG---HAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQT-ISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~~~---~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~ 151 (281)
..+....+..... +......+.++|++++++++.. +++|.+||++... .+.. +.. .....+.+
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-----~~~~~i~~------~~~~~v~~ 158 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-----YVEDVTAA------AGCWSVIP 158 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-----EEEEEGGG------TTEEEEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-----EEEEEecC------CCcceeEE
Confidence 5543322222211 2244678999999999988875 5799999887542 2333 211 11222455
Q ss_pred ccCC-CEEEEeeCCCcEEEEeCC
Q 023500 152 NAKG-DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~-~~l~s~~~d~~i~~w~~~ 173 (281)
.|++ ..+++.+.||.+.+|+.+
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEEC
T ss_pred cCCCCeeEEEECCCCcEEEEEEC
Confidence 5654 456667777777777653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-10 Score=93.86 Aligned_cols=200 Identities=12% Similarity=0.129 Sum_probs=133.4
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee---------cCCCCCeeEEEEcC-CCCEEEEec-CCCcEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL---------EGHENEVKSVSWNA-SGTLLATCG-RDKSVW 72 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~---------~~h~~~v~~v~~~~-~~~~l~s~~-~d~~v~ 72 (281)
.....++++|+|+++++...++.|.+|+..+.. ..+..+ .++-.....++++| ++.++++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 356789999999999999889999999875542 123333 23444678999999 788888886 689999
Q ss_pred EEEecCCCeeEEeEeec----------CCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 73 IWEVMPGNEFECVSVLQ----------GHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~----------~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
+|+. .+.. +..+. ++-.....++++|+ +.++++...++.|++|+.+... .+..+.. ..
T Consensus 170 ~~~~-~g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-----~~~~~~~--~~ 238 (329)
T 3fvz_A 170 QFSP-SGKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE-----FVREIKH--AS 238 (329)
T ss_dssp EECT-TSCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----EEEEECC--TT
T ss_pred EEcC-CCCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-----EEEEEec--cc
Confidence 9983 3332 22221 12234789999998 7788888889999999876322 2333321 23
Q ss_pred ccccEEEEEEcc------CCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee--cccCcceEEEEeCCCc-eee
Q 023500 142 HSSTIWALSFNA------KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS--GYHDRTIFSVHWSREG-IIA 212 (281)
Q Consensus 142 h~~~v~~~~~~~------~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~~ 212 (281)
+...+..++|+| ++..+++...+..+++|+...++.. ..+. ..+...+..++++++| +++
T Consensus 239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----------~~~~~~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----------DVFKPVRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----------EEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----------EEEcCCCCccCCeeEEEECCCCCEEE
Confidence 446678899998 3333333344558999987543221 1111 1233456788889887 566
Q ss_pred ecCCCCcEEEEecc
Q 023500 213 SGAADDSVQFFVES 226 (281)
Q Consensus 213 ~~~~d~~~~~~~~~ 226 (281)
+...++.++.|+..
T Consensus 308 ad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 308 GDAHTNTVWKFTLT 321 (329)
T ss_dssp EESSSCCEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 66778889988654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-09 Score=85.62 Aligned_cols=185 Identities=14% Similarity=0.088 Sum_probs=121.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC-CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCC-
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH- 91 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~- 91 (281)
.+++|++++.|+.|.+||..+++. +..+..+. ..+.++.+.|+|+.+++ .++.|..||. .++. +..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~---~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRE---LWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCE---EEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCE---EEEEcCCC
Confidence 468899999999999999877764 44555554 47889999999999884 4678898887 4543 3333333
Q ss_pred ccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeee--eccCCccccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 92 AQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
...+.++.+.|+++++++.+. ++.+..++.+.. .+.++. ....++...+..+++.+++.++++...++.|.
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk------~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGE------VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSC------EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCCCC------EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEE
Confidence 346788999999999999887 667766654221 111111 11112223445567889999999999999999
Q ss_pred EEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecc
Q 023500 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 226 (281)
Q Consensus 169 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~ 226 (281)
.||.+ ++.. |+ +.. ...+.++...+++ +++++..++.+..++..
T Consensus 150 ~~d~~-G~~~-------w~----~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 150 EIAPN-GQLL-------NS----VKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EECTT-SCEE-------EE----EEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred EECCC-CCEE-------EE----EEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 99986 4321 11 110 1223344555554 56666667677777554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-08 Score=80.55 Aligned_cols=237 Identities=9% Similarity=-0.014 Sum_probs=150.9
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..+..++++++|+++++...++.|..|+.. +.... ..+......+.++++.|+|+++++...++.|..|+. .+.. .
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~ 132 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-R 132 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-E
Confidence 457889999999998887778889999875 33322 122224457889999999998888877888999987 3332 1
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
......+...+..+.+.|++.++++...++.|..|+. ... +..+. ...+...+..+++++++..+++...
T Consensus 133 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~------~~~~~--~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 133 -EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD------ITEFK--IPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC------EEEEE--CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred -EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc------EEEee--CCCCCCcceeEEECCCCCEEEEccC
Confidence 1222334456889999999988888777889999876 221 11111 1122345788999999887777666
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec-CCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-AADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
++.|..|+. ..... . ... ......+..+.+++++.+..+ ..++.+..++... . .. .+.
T Consensus 203 ~~~i~~~~~-~g~~~---------~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g------~-~~-~~~- 261 (299)
T 2z2n_A 203 GNKIGRITT-SGEIT---------E-FKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN------I-IE-EYP- 261 (299)
T ss_dssp TTEEEEECT-TCCEE---------E-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTT------E-EE-EEE-
T ss_pred CceEEEECC-CCcEE---------E-EEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECCCC------c-eE-EEe-
Confidence 788999976 22111 0 001 112345678888887654444 4667888886521 1 11 111
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...+...+.++++ +++. ++++.+ .+.|..++..
T Consensus 262 ~~~~~~~~~~i~~-~~g~-l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 262 IQIKSAEPHGICF-DGET-IWFAME-CDKIGKLTLI 294 (299)
T ss_dssp CSSSSCCEEEEEE-CSSC-EEEEET-TTEEEEEEEC
T ss_pred CCCCCCccceEEe-cCCC-EEEEec-CCcEEEEEcC
Confidence 1234456889999 7664 555555 4555556654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-09 Score=88.19 Aligned_cols=256 Identities=9% Similarity=-0.007 Sum_probs=148.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~ 82 (281)
....++|+|+|+++++...++.|++||..++....+. .. ..... ++|+|+++.|+.+..++ .|.+++.......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~--~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH--PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE--ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee--cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4678999999998888888899999998776543222 22 22233 89999999988887766 6777776544321
Q ss_pred EEeEeecC-CccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc-EE-EEEEccC-CCEE
Q 023500 83 ECVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IW-ALSFNAK-GDKL 158 (281)
Q Consensus 83 ~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~-v~-~~~~~~~-~~~l 158 (281)
.....+.. ......+++++|+...|+.+..++.|+.|+.+.... ..+..... .++... .. .++|+|+ +.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~--~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLEL--SGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCC--CSCCCCSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccc--cCCCCCCccccEEEeCCCCEEE
Confidence 12211222 345678899999555555567788999998764321 11100001 111111 13 8999995 5566
Q ss_pred EEeeCCCcEEEEeCCcccccc-CCC-CcccceeEEeecccCcceEEEEeCCCc-eeeecC-CCCcEEEEecccCCCcCCc
Q 023500 159 VSCSDDLTIKIWGADITRMQS-GDG-YASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~d~~~~~~~~~~~~~~~~~ 234 (281)
++-..++.|+.|+.+...... ... ...+..- ......-.....+++++++ ++++-. .+..++.|+.....+
T Consensus 283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg-~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v---- 357 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQDG-LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV---- 357 (409)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECTTCCSCBCE-EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE----
T ss_pred EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCC-cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE----
Confidence 666677889999765321000 000 0000000 0000001235678888877 556666 678888886432111
Q ss_pred cceeeeee-----------ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 235 SYKMLLKK-----------EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 235 ~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..+... ....-.....+++++++ .++++...++.|+.+++
T Consensus 358 --~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 --STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred --EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 011110 00012357899999985 68888888889988775
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-09 Score=88.65 Aligned_cols=238 Identities=9% Similarity=-0.012 Sum_probs=144.0
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
...+.+. .++++++...++.|.+||..+++. +..+. .......++++|+++..++...++.|.+||.........+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~--~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE--VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE--EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEE--EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 4556664 455666777789999999987753 44443 3456788999999865555558899999998755422111
Q ss_pred Eeec--CCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 86 SVLQ--GHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 86 ~~~~--~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..-. ++......+.+ ..+.++++.. .++.|.++|.+... ....+.. ...+..+.++|++++++++.
T Consensus 122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~-----~~~~i~~-----g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK-----VVDELTI-----GIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE-----EEEEEEC-----SSCBCCCEECTTSEEEEEBC
T ss_pred EcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe-----EEEEEEc-----CCCccceEEcCCCCEEEEEC
Confidence 1111 01113456666 3444444443 48899999876542 2223321 12345788999998777776
Q ss_pred CC----------CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCc
Q 023500 163 DD----------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI 231 (281)
Q Consensus 163 ~d----------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 231 (281)
.+ +.|.++|.+..+. ...+..........+++++++ .+..... .+.+++.....+.
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v-----------~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTV-----------EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEE-----------EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CCccCCccccCCceEEEEECCCCeE-----------EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 55 7899998764321 111111112356778888754 3433333 6777766543221
Q ss_pred CCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEe----CCCCeEEEEEcc
Q 023500 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA----SDDGMIKIWELA 278 (281)
Q Consensus 232 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~----~~Dg~v~iw~~~ 278 (281)
... . ...+......++++|++.+++++. ..++.|.+||..
T Consensus 258 ~~~----~---~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 258 VRP----F---LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SSC----S---BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eee----e---ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 100 0 011235678899999666788887 678999999975
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-10 Score=101.05 Aligned_cols=242 Identities=10% Similarity=0.081 Sum_probs=131.6
Q ss_pred CCCCEEEEeeCCC-c--EEEEec--CCCceeeeeee----cCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEecC
Q 023500 13 PSGKLLATASFDA-T--TCIWED--VGGDYECVATL----EGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMP 78 (281)
Q Consensus 13 ~~~~~l~tg~~d~-~--i~lw~~--~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~ 78 (281)
|+|++++-...++ . -.||-. .++....+... .+|...+..++|||||++|+.++.++ +|++||+..
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7898776554332 1 144543 33332222111 23445688999999999988654433 899999976
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe----------------EEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT----------------IKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~----------------v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
++.... .+ . ...+..++|+|+++.|+.++.++. |++|++....... ..+. ....|
T Consensus 161 g~~~~~--~~-~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~----~~~~~ 231 (710)
T 2xdw_A 161 AKELPD--VL-E-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCA----EFPDE 231 (710)
T ss_dssp TEEEEE--EE-E-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEE----CCTTC
T ss_pred CCCCcc--cc-c-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEe----ccCCC
Confidence 643221 11 1 123678999999999998888766 9999886543111 1111 11234
Q ss_pred cccEEEEEEccCCCEEEEeeC-----CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC
Q 023500 143 SSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA 215 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~ 215 (281)
...+..+.|+|++++|+..+. +..|.+||...... ...+...++ .+.. +...+.. .+++++ +++.+.
T Consensus 232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~---~l~~-~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN-GITGILKWV---KLID-NFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS-SSCSSCCCE---EEEC-SSSSCEE-EEEEETTEEEEEEC
T ss_pred CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc-ccCCccceE---EeeC-CCCcEEE-EEeccCCEEEEEEC
Confidence 555778999999998887764 56788888753000 000000011 1111 1111222 233333 333333
Q ss_pred C---CCcEEEEecccCCCcCCccceeeeeeccCCC--CCeeEEEEcCCCCeeEEEeCCCCeE--EEEEc
Q 023500 216 A---DDSVQFFVESKDDLIDGPSYKMLLKKEKAHD--MDVNSVQWSPGERRLLASASDDGMI--KIWEL 277 (281)
Q Consensus 216 ~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~s~~~Dg~v--~iw~~ 277 (281)
. +..+.+++...... .....+. .|. ..+..++|+++ ..++++...|+.. .+|++
T Consensus 306 ~~~~~~~l~~~d~~~~~~---~~~~~l~----~~~~~~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEE---SKWKVLV----PEHEKDVLEWVACVRS-NFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp TTCTTCEEEEEETTSCCG---GGCEEEE----CCCSSCEEEEEEEETT-TEEEEEEEETTEEEEEEEET
T ss_pred CCCCCCEEEEEeCCCCCc---ccceecc----CCCCCCeEEEEEEEcC-CEEEEEEEECCEEEEEEEEC
Confidence 2 23566665533210 0111221 232 25778899865 4678888889864 45554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-08 Score=79.32 Aligned_cols=238 Identities=8% Similarity=-0.007 Sum_probs=154.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..+..++++++|+++++...++.|.+|+.. ++... ..+..+...+.++++.++|.+.++...++.|..+|.. +.. .
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~ 95 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-T 95 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-E
Confidence 457889999999998887778999999877 54432 2223344678899999999988887778889988865 332 1
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
..........+..+.+.|++.++++...++.|..++.+ .. ...+. .......+..+++.+++..+++...
T Consensus 96 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~------~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 96 -EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT------IYEYD--LPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp -EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC------EEEEE--CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred -EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC------EEEcc--CCCCCCCceeEEECCCCCEEEEecC
Confidence 12222234568899999999888887778889888654 21 11111 1112345788999999987776666
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCcee-eecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGII-ASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
++.|..++.. +.. .. ... ......+..+.+++++.+ ++....+.+..++... .. .. . .
T Consensus 166 ~~~i~~~~~~-g~~---------~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g------~~-~~-~-~ 224 (300)
T 2qc5_A 166 NNSIGRITNT-GKL---------EE-YPL-PTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG------EI-SE-Y-D 224 (300)
T ss_dssp TTEEEEECTT-CCE---------EE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC------CE-EE-E-E
T ss_pred CCeEEEECCC-CcE---------EE-eeC-CCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC------cE-EE-E-E
Confidence 7788888763 111 00 000 012234667788877654 4444556677775421 11 11 1 1
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
...+...+.++++.+++. ++++...++.|..|+.
T Consensus 225 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred CCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence 122345688999999875 6666666788888876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-10 Score=91.27 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=126.0
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeecC------CCCCeeEEEEcCCCCEEEEecC--CC
Q 023500 8 SCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEG------HENEVKSVSWNASGTLLATCGR--DK 69 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~~~~~l~s~~~--d~ 69 (281)
.++|+|||+++..++ .++.|.+||..+.+. +..+.. +......++|+|+|++|+++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~--~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF--EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE--EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE--EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 689999999888776 367799999876543 333331 1234567999999999988763 68
Q ss_pred cEEEEEecCCCeeEEeEe-ecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCC-------------------
Q 023500 70 SVWIWEVMPGNEFECVSV-LQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDN------------------- 128 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~------------------- 128 (281)
+|.+||+...+. +.. +... ....+.+.|++ ..+++.+.|+++.+|+.+......
T Consensus 132 ~v~v~d~~~~~~---~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 2oiz_A 132 SIGIVDVAKGDY---VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIA 206 (361)
T ss_dssp EEEEEETTTTEE---EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSC
T ss_pred eEEEEECCCCcE---EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEE
Confidence 999999976532 233 2211 11223444543 345555666666555543211000
Q ss_pred --------------------------ceeeeeeeecc-----CC-ccccEEEEEEccCCCEEEEeeC-----------CC
Q 023500 129 --------------------------WHCVQTISESN-----NG-HSSTIWALSFNAKGDKLVSCSD-----------DL 165 (281)
Q Consensus 129 --------------------------~~~~~~~~~~~-----~~-h~~~v~~~~~~~~~~~l~s~~~-----------d~ 165 (281)
........... .+ .+.....++|+|++..++.... +.
T Consensus 207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 00000000000 00 0011112688998877666532 34
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
.|.+||.+..+ .+..+.. + . +..+.++|++. ++++.. +.+.+|+.....+ .......
T Consensus 287 ~v~viD~~t~~-----------~v~~i~~-~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l-------~~~~~i~ 344 (361)
T 2oiz_A 287 EIWVMDTKTKQ-----------RVARIPG-R-D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP-------KLLRTIE 344 (361)
T ss_dssp EEEEEETTTTE-----------EEEEEEC-T-T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSC-------EEEEEET
T ss_pred eEEEEECCCCc-----------EEEEEec-C-C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc-------eeeEEec
Confidence 79999876432 2233332 2 2 78889998764 444444 8999996643200 1222223
Q ss_pred CCCCCeeEEEEcCCCC
Q 023500 245 AHDMDVNSVQWSPGER 260 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~ 260 (281)
.+....+.++++|+|+
T Consensus 345 ~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 345 GAAEASLQVQFHPVGG 360 (361)
T ss_dssp TSCSSEEEEEECCCSC
T ss_pred cCCCCcEEEEecCCCC
Confidence 4556678899999874
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-09 Score=82.84 Aligned_cols=231 Identities=11% Similarity=0.109 Sum_probs=137.6
Q ss_pred eEEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 7 RSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 7 ~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
-...|+|+ +.++++...++.|..||..++... .+. ....+.+++++|+|+++++. +..|.+||...+. ...+
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~-~~~~ 88 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS-AVVL 88 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE-EEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc-EEEE
Confidence 46689995 556777777889999998776532 222 45678999999999966654 5678889876443 2222
Q ss_pred EeecC--CccceeEEEecCCCCeEEEEecC---------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 86 SVLQG--HAQDVKMVQWHPTMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 86 ~~~~~--~~~~v~~v~~~p~~~~l~s~s~d---------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
..... ....++.+.+.|++.++++...+ ..-.+|.+.... . ...+. .+....+.++|+|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~---~~~~~----~~~~~pngi~~spd 159 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--H---VKKYF----DQVDISNGLDWSLD 159 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--C---EEEEE----EEESBEEEEEECTT
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--C---EEEEe----eccccccceEEcCC
Confidence 22111 12347889999999977765432 334556554221 1 11111 11234678999999
Q ss_pred CCEE-EEeeCCCcEEEEeCC--ccccccCCCCcccceeEEeecccCcceEEEEeCCCcee-eecCCCCcEEEEecccCCC
Q 023500 155 GDKL-VSCSDDLTIKIWGAD--ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGII-ASGAADDSVQFFVESKDDL 230 (281)
Q Consensus 155 ~~~l-~s~~~d~~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~ 230 (281)
++.| ++.+.++.|..|+.+ .+... ..+....+. ........+.++++|.+ ++...++.+..|+....
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~------~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-- 230 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQIS------NRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-- 230 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEE------EEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC--
T ss_pred CCEEEEecCCCCcEEEEeccCCCCccc------CcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc--
Confidence 9866 455567889999763 11110 001111111 12245567888887754 44445667888855321
Q ss_pred cCCccceeeeeeccCCCCCeeEEEEc-CCCCeeEEEeCCC
Q 023500 231 IDGPSYKMLLKKEKAHDMDVNSVQWS-PGERRLLASASDD 269 (281)
Q Consensus 231 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~s~~~D 269 (281)
. .......+...+++++|. |+++.++++.+.+
T Consensus 231 ---~----~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 231 ---K----RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp ---C----EEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred ---e----EEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 1 122223344678999998 7777787777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-09 Score=85.20 Aligned_cols=230 Identities=11% Similarity=0.090 Sum_probs=134.8
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 6 VRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.....|+|+|+ +++++..++.|..|+.. +.. ..+..+...+..++++++|+++++...++.|..|+.. +.....
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV---DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE---EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE---EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 45678999998 67777788899999873 432 2334456778999999999987777677888888864 331111
Q ss_pred eEeecCC-ccceeEEEecCCCCeEEE----Eec-------------CCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 85 VSVLQGH-AQDVKMVQWHPTMDVLFS----CSY-------------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 85 ~~~~~~~-~~~v~~v~~~p~~~~l~s----~s~-------------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
.....+. ...++.+.+.|++.++++ +.. .+.|..++..... ... +. .....
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---~~~---~~-----~~~~p 190 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---LQR---MA-----DLDHP 190 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---CEE---EE-----EESSE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---EEE---Ee-----cCCCC
Confidence 1111111 124678999999998886 332 2345555443221 111 11 12345
Q ss_pred EEEEEccCCCEEEEeeCC------CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcE
Q 023500 147 WALSFNAKGDKLVSCSDD------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 220 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~ 220 (281)
..++|+|+++.|+.+... +.|..|+.+.... .....+..........+.++++|.+..+..+ .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l---------~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv 260 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL---------HDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GV 260 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE---------EEEEEEECCSSSCCCSEEECTTSCEEECCSS-EE
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc---------cCCeEEEECCCCCCCeEEECCCCCEEEecCC-cE
Confidence 789999999977776654 6788887642210 0011111111222345667777766655544 47
Q ss_pred EEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEE
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~ 273 (281)
.+|+... .. ........ .+..++|.|+++.++++++ ++..+
T Consensus 261 ~~~~~~g------~~----~~~~~~~~-~~~~~~f~~d~~~L~it~~-~~l~~ 301 (305)
T 3dr2_A 261 CVFDSDG------QL----LGHIPTPG-TASNCTFDQAQQRLFITGG-PCLWM 301 (305)
T ss_dssp EEECTTS------CE----EEEEECSS-CCCEEEECTTSCEEEEEET-TEEEE
T ss_pred EEECCCC------CE----EEEEECCC-ceeEEEEeCCCCEEEEEcC-CeEEE
Confidence 7775422 11 11111222 4888999988777666554 44433
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-10 Score=88.30 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=106.0
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCC-CCCeeEEEEcCCCCEEEE----ecCC--------
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGH-ENEVKSVSWNASGTLLAT----CGRD-------- 68 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h-~~~v~~v~~~~~~~~l~s----~~~d-------- 68 (281)
...+..++++|+|+++++...++.|.+||..+++...+.. ..+. ...++.++++|+|+++++ |..+
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 3567899999999998887777899999986665433221 1111 134678999999998887 3310
Q ss_pred ---CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCc-eeeeeeeeccCCccc
Q 023500 69 ---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSS 144 (281)
Q Consensus 69 ---~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~-~~~~~~~~~~~~h~~ 144 (281)
+.-.||.+..... ...+..+......++|+|+++.+++.+.++.|.+|++..... . .....+ ..+..
T Consensus 148 ~~~~~~~l~~~~~~g~---~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~--~~~~~~~~----~~~~~ 218 (296)
T 3e5z_A 148 MELPGRWVFRLAPDGT---LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE--TEYQGVHF----TVEPG 218 (296)
T ss_dssp CCSSSCEEEEECTTSC---EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC--EEEEEEEE----CCSSS
T ss_pred ccCCCcEEEEECCCCC---EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc--CcCCCeEe----eCCCC
Confidence 1225566544332 222344555678999999999888888889999998862211 1 001111 12344
Q ss_pred cEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 145 TIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
.+..+++++++.++++. ++.|.+|+.+
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 56678999999876665 7789999875
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-11 Score=98.87 Aligned_cols=140 Identities=11% Similarity=-0.007 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
|+.++| ++++|+++ .++.|++||...... ......|...+.++.+.+. .++++..||+|.+||+......
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~--~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--- 159 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSE--FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--- 159 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC--EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc--cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---
Confidence 899999 99999998 889999999765432 2344567788888877653 3888899999999999765431
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc--CCccccEEEEEEccCCCEEEEe
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN--NGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+...|+|++|+|.+ ++.|..||++++|+.+.......+.+....... .+|...|.++.|.+++.+|++-
T Consensus 160 ----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 160 ----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ----EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 134679999999999 678899999999966543210011111111011 1467889999999998887773
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-09 Score=83.95 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=129.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
..+..++++++|+++++.. ++.|.+|+..+.... .+. .......+++++|+|+++++...++.|.+|+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~- 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT---VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ- 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE---ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe---eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-
Confidence 3567899999999777766 888999987665322 222 2235678999999999888887888999986432221
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.............++++|+++++++...++.|.+|+..... ... .. ..+...+..+++++++..+++..
T Consensus 142 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~-~~---~~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 142 --TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-----QVV-LP---FTDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp --EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-----EEE-CC---CSSCCSEEEEEECTTCCEEEEET
T ss_pred --EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-----eEe-ec---ccCCCCceEEEECCCCCEEEEEC
Confidence 11112233457889999999988887778899999765432 111 11 12225578899999997777777
Q ss_pred CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 163 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
.++.|..|+.+...... ....+...+..+.+++++ ++++...++.++++..
T Consensus 211 ~~~~v~~~~~~~~~~~~------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTV------------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp TTSCEEEECTTCSCCEE------------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCCcEEEEcCCCCccee------------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 78899999875321110 000112446778888766 4566667888888854
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-07 Score=75.01 Aligned_cols=236 Identities=8% Similarity=0.013 Sum_probs=148.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..+..++++++|+++++...++.|..||.. ++.. ...+......+.++++.++|++.++...++.|..++.. +.. .
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~ 137 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y 137 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E
Confidence 457889999999988877777889999876 4432 22222234678899999999988888778888888865 332 1
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
...+......+..+.+.|+++++++...++.|..++.. .. ...+. ...+...+..+++++++...++...
T Consensus 138 -~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~------~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~ 207 (300)
T 2qc5_A 138 -EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK------LEEYP--LPTNAAAPVGITSGNDGALWFVEIM 207 (300)
T ss_dssp -EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC------EEEEE--CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred -EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc------EEEee--CCCCCCCcceEEECCCCCEEEEccC
Confidence 11233334567899999999977777778889888662 11 11111 1122345788999999877776666
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCcee-eecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGII-ASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.+.|..|+.. +.. .. .... .....+..+.+++++.+ ++...++.+..++... .. . ...
T Consensus 208 ~~~i~~~~~~-g~~---------~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g------~~-~-~~~- 266 (300)
T 2qc5_A 208 GNKIGRITTT-GEI---------SE-YDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITNDN------TI-Q-EYQ- 266 (300)
T ss_dssp TTEEEEECTT-CCE---------EE-EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTTS------CE-E-EEE-
T ss_pred CCEEEEEcCC-CcE---------EE-EECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECCCC------cE-E-EEE-
Confidence 7789998763 111 00 0011 12345677888877654 4444567788885521 11 1 111
Q ss_pred ccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 243 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 243 ~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.......+.++++.+++. ++++.. . .|..++.
T Consensus 267 ~~~~~~~~~~i~~~~~g~-l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 267 LQTENAEPHGITFGKDGS-VWFALK-C-KIGKLNL 298 (300)
T ss_dssp CCSTTCCCCCEEECTTSC-EEEECS-S-EEEEEEE
T ss_pred CCccCCccceeEeCCCCC-EEEEcc-C-ceEEeCC
Confidence 122335578899999875 555554 4 6666664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-08 Score=85.65 Aligned_cols=238 Identities=12% Similarity=0.056 Sum_probs=144.2
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec--CCCeeEEeEeecC
Q 023500 13 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM--PGNEFECVSVLQG 90 (281)
Q Consensus 13 ~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~--~~~~~~~~~~~~~ 90 (281)
|.+.++++...++.|.++|..+++. +..+. ....+..+.|+|||+++++++.|+.|.+||+. ..+. +..+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v--~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~---v~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI--KTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT---VAEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE--EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---EEEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE--EEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---eEEEec
Confidence 4455777888899999999887753 44444 23456789999999999999999999999984 3332 233332
Q ss_pred CccceeEEEec----CCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeec---cC---Cccc-cEEEEEEccCCC-E
Q 023500 91 HAQDVKMVQWH----PTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISES---NN---GHSS-TIWALSFNAKGD-K 157 (281)
Q Consensus 91 ~~~~v~~v~~~----p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~---~~---~h~~-~v~~~~~~~~~~-~ 157 (281)
. .....+.|+ |++++++++++ ++++.++|..+.. .+..+... .. .|+. .+..+..++++. .
T Consensus 239 G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-----~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 239 G-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-----PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp C-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-----EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred C-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-----EEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 2 235789999 69998776665 4899999865432 22222211 01 1223 577788888755 4
Q ss_pred EEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCcc
Q 023500 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 158 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
++....+|.|.++|....+. .....+. .......+.|++++. +++...++.+.+++.....+
T Consensus 313 vv~~~~~g~v~~vd~~~~~~---------~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl----- 376 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNN---------LKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL----- 376 (567)
T ss_dssp EEEETTTTEEEEEETTCSSE---------EEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred EEEecCCCeEEEEecCCCcc---------ceeeeee--ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE-----
Confidence 55556778999988653210 0011111 123345677888763 34444567788886654211
Q ss_pred ceeeee-eccCCCCCeeEEEEcCCCCeeEEEeC-CCCeEEEEEccc
Q 023500 236 YKMLLK-KEKAHDMDVNSVQWSPGERRLLASAS-DDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~v~iw~~~~ 279 (281)
....-. ....|...-..+ ++|++..+++++. .++.|.++|...
T Consensus 377 ~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 377 VAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 111111 112343222122 5787566666654 468999998754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-08 Score=79.32 Aligned_cols=230 Identities=9% Similarity=0.040 Sum_probs=134.6
Q ss_pred eEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 7 RSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 7 ~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
....|+|++ .++++...++.|..|+..++... .+. ....+.++.|+|+|+++++. . ..|.+||...+.. ..+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT---VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVL-TLH 124 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCE-EEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcE-EEE
Confidence 467899974 56677777889999998776432 222 34678999999999887765 3 3488898765542 222
Q ss_pred EeecC--CccceeEEEecCCCCeEEEEecC----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 86 SVLQG--HAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 86 ~~~~~--~~~~v~~v~~~p~~~~l~s~s~d----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
..... ....++.+.++|++.++++...+ ....+|.+... . ...+.. +......++|+|+++.|+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g---~---~~~~~~----~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---K---VTKLFA----DISIPNSICFSPDGTTGY 194 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---E---EEEEEE----EESSEEEEEECTTSCEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC---c---EEEeeC----CCcccCCeEEcCCCCEEE
Confidence 11111 12357899999999977765432 23444443311 1 111111 123467899999998665
Q ss_pred Ee-eCCCcEEEEeCC--cc-ccccCCCCcccceeEEeecccCcceEEEEeCCCceeeec-CCCCcEEEEecccCCCcCCc
Q 023500 160 SC-SDDLTIKIWGAD--IT-RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-AADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 160 s~-~~d~~i~~w~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~ 234 (281)
.+ +.++.|.+|+.+ .+ ... ..+....+. ........+.++++|.+..+ ..++.+..|+... .
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~------~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g------~ 261 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTG------KAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG------N 261 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSS------CCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC------C
T ss_pred EEECCCCEEEEEEcccccCCccc------CceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC------C
Confidence 44 557889999864 21 110 001111111 11234566778877754443 3456777785421 1
Q ss_pred cceeeeeeccCCCCCeeEEEEc-CCCCeeEEEeCCCC
Q 023500 235 SYKMLLKKEKAHDMDVNSVQWS-PGERRLLASASDDG 270 (281)
Q Consensus 235 ~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~s~~~Dg 270 (281)
.......+...+++++|. +++..++++.+.++
T Consensus 262 ----~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 262 ----HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ----EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ----EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 112222344569999998 87777777766553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.8e-09 Score=94.05 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=129.4
Q ss_pred cCCCCEEEEeeCCCc---EEEEecC-----CCceeeeee----ecCCCCCeeEEEEcCCCCEEEEecCC-----CcEEEE
Q 023500 12 SPSGKLLATASFDAT---TCIWEDV-----GGDYECVAT----LEGHENEVKSVSWNASGTLLATCGRD-----KSVWIW 74 (281)
Q Consensus 12 ~~~~~~l~tg~~d~~---i~lw~~~-----~~~~~~~~~----~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~~w 74 (281)
+|+|++++....++. -.||... ++....+.. -.+|...+..++|||||++|+.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998876665543 5566532 333222211 12344468889999999998876543 469999
Q ss_pred EecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe--------------EEEEeCCCCCCCCceeeeeeeeccC
Q 023500 75 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT--------------IKVWWAEDTDSDNWHCVQTISESNN 140 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~--------------v~~w~~~~~~~~~~~~~~~~~~~~~ 140 (281)
|+..+..... ..+...+..+.|+|+ +.|+.++.|.. |++|++....... ..+ . ...
T Consensus 195 dl~tg~~~~~----~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv---~-~~~ 264 (741)
T 1yr2_A 195 GVADGKPLAD----ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPV---F-ATP 264 (741)
T ss_dssp ETTTCCEEEE----EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEE---E-CCT
T ss_pred ECCCCCCCCc----cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEE---e-ccC
Confidence 9977653221 111222467899999 98888777654 8888775432111 111 1 112
Q ss_pred CccccEEEEEEccCCCEEEEeeCCC-----cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 141 GHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 141 ~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
.++..+..+.|+|+|++|+..+.++ .|.+||.+..... .++ .+..........+. ..+..++..+
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~~~---~l~~~~~~~~~~~~-~dg~~l~~~s 334 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG------PVT---ALIPDLKAQWDFVD-GVGDQLWFVS 334 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC------CCE---EEECSSSSCEEEEE-EETTEEEEEE
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc------ccE---EecCCCCceEEEEe-ccCCEEEEEE
Confidence 3334578899999999888776543 7888876532100 001 11111111111222 2223333222
Q ss_pred C----CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 216 A----DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 216 ~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. +..+..++..... .....+. ..+...+..++|. +..++++...|+..+||.+.
T Consensus 335 ~~~~~~~~l~~~d~~~~~----~~~~~l~---~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGST----PRFDTVV---PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CTTCTTCEEEEEECSSSS----CEEEEEE---CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEeCCCCc----cccEEEe---cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 2 3446666543210 1111221 2344456677887 34688899999988888654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7e-08 Score=83.96 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=148.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecC--CCceeeeeeecCCCCCeeEEEEc----CCCCEEEEec-CCCcEEEEEec
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWN----ASGTLLATCG-RDKSVWIWEVM 77 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~----~~~~~l~s~~-~d~~v~~w~~~ 77 (281)
.+..+.|+|||+++.+++.|+.|.+||.. +.+ .+..+... ..-..++|+ |+|+++++++ .++++.++|..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 34578999999999999999999999985 443 34555432 234689999 6999877665 45899999976
Q ss_pred CCCeeEEeEeec----C---C-ccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 78 PGNEFECVSVLQ----G---H-AQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 78 ~~~~~~~~~~~~----~---~-~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
..+....+.+.. + | ...+..+..++++.. +++...+|.|.+++...... ..+..+. .......
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~---~~v~~i~-----~~~~~~d 346 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---LKTTEIS-----AERFLHD 346 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---EEEEEEE-----CCSSEEE
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc---ceeeeee-----ccccccC
Confidence 554332222110 0 1 225677778887654 55666778999988765321 1122221 1233567
Q ss_pred EEEccCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEE-eecccCcceEEEEeCCC-ce-eeecC-CCCcEEEE
Q 023500 149 LSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCT-ISGYHDRTIFSVHWSRE-GI-IASGA-ADDSVQFF 223 (281)
Q Consensus 149 ~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~-~~~~~-~d~~~~~~ 223 (281)
+.|+|++++|+++. .++.|.++|.+..+.... ... -...|...-..+ ++|+ +. +++.. .++.+.++
T Consensus 347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~--------i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 347 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAI--------EDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE--------EECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred ceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE--------EeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 89999999876654 578999999875432110 000 000121111112 2454 43 34433 45788888
Q ss_pred ecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC------CCeEEEEEcccC
Q 023500 224 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD------DGMIKIWELANT 280 (281)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~------Dg~v~iw~~~~~ 280 (281)
+........ ...+.. .........-..+..+|++++++++... .+.|.++|+.+.
T Consensus 418 d~~~~~~~~-~~~kvv-~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 418 GTDPEGHPD-NAWKIL-DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECCTTTCTT-TBTSEE-EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cCCCCCCcc-ccCEEE-EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 664321110 011222 2222222222447789999888775521 358999998753
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-08 Score=89.69 Aligned_cols=243 Identities=15% Similarity=0.096 Sum_probs=132.4
Q ss_pred cceeEEEEcCCCCEEEE-----eeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC---------
Q 023500 4 RTVRSCAWSPSGKLLAT-----ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--------- 69 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~t-----g~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--------- 69 (281)
..+..++|||||++||- |+....|++||..+++.... .+.+ .....++|+ ||+.|+.++.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 35778899999998883 33335799999988764322 2221 113567899 999888887764
Q ss_pred ----cEEEEEecCCCe-eEEeEeecC-CccceeEEEecCCCCeEEEEec----CCeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 70 ----SVWIWEVMPGNE-FECVSVLQG-HAQDVKMVQWHPTMDVLFSCSY----DNTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 70 ----~v~~w~~~~~~~-~~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~----d~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
.|++|++..... ...+..... |......+.|+|++++|+..+. ++.|++++++.... . ...+.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~---~~~l~--- 277 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-P---LLTVQ--- 277 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-C---CEEEE---
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-c---eEEEe---
Confidence 388898765432 122333333 4445678999999997654332 24888888765421 1 12222
Q ss_pred CCccccEEEEEEccCCCEEEEee-CC---CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecC
Q 023500 140 NGHSSTIWALSFNAKGDKLVSCS-DD---LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 215 (281)
Q Consensus 140 ~~h~~~v~~~~~~~~~~~l~s~~-~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (281)
.+....... ++++++.|+..+ .+ +.|..++++.... ..|+. +.......+ .+++..+.+++...
T Consensus 278 -~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~------~~~~~---l~~~~~~~~-~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 278 -GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP------AHWRD---LIPERQQVL-TVHSGSGYLFAEYM 345 (693)
T ss_dssp -CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG------GGCEE---EECCCSSCE-EEEEETTEEEEEEE
T ss_pred -CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc------cccEE---EecCCCCEE-EEEEECCEEEEEEE
Confidence 122223333 566666554443 33 4566676653221 01221 111122333 44444444555555
Q ss_pred CCCc--EEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC---CCeEEEEEcc
Q 023500 216 ADDS--VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD---DGMIKIWELA 278 (281)
Q Consensus 216 ~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~---Dg~v~iw~~~ 278 (281)
.++. +++++... .. ...........+..+.+++++..++.+.+. -+.|..||+.
T Consensus 346 ~~g~~~l~~~d~~g------~~---~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 346 VDATARVEQFDYEG------KR---VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp ETTEEEEEEECTTS------CE---EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCeeEEEEEECCC------Ce---eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 6664 44553321 11 111111223446667778877766555443 2678888764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-07 Score=76.21 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=126.8
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEecC--C
Q 023500 8 SCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCGR--D 68 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d 68 (281)
.++++|||+++..+. .++.|.+||..+.+. +..+.-- ...-..+.|+|||++|+.+.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 689999999887775 367899999876543 3322110 112347899999999988764 5
Q ss_pred CcEEEEEecCCCeeEEeEe-ecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 69 KSVWIWEVMPGNEFECVSV-LQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~-~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++|.++| ...+. +.. +.. . .++.+.|.+ ..+++.+.|+++.+++. ...... .........+.....
T Consensus 148 ~~v~viD-~t~~~---~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~---~~~~~~~~~~~~p~~ 215 (373)
T 2mad_H 148 PAVGLVV-QGGSS---DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG---AGLVGAMLTAAQNLL 215 (373)
T ss_pred CeEEEEE-CCCCE---EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE---EEeccccccCCccee
Confidence 7899999 76543 222 221 1 124455654 35677788999988877 332110 000000001111111
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC---------
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA--------- 215 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~--------- 215 (281)
....+.+++..++..+.++.+.+.|......................++.......+.+++++ ++++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~ 295 (373)
T 2mad_H 216 TQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred ecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence 234556665544444467788888774321110000000000000000011112224445543 233221
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeC-CCCeEEEEEccc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS-DDGMIKIWELAN 279 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~v~iw~~~~ 279 (281)
..+.+.+++.... +. ..... .......++|+|+++.++.++. .++.|.+||+..
T Consensus 296 ~~~~V~VID~~t~--------~v-v~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 296 AAKEVTSVTGLVG--------QT-SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred CCCeEEEEECCCC--------EE-EEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 1234555544321 11 11111 1225788999999984444555 589999999864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-07 Score=74.19 Aligned_cols=162 Identities=14% Similarity=0.179 Sum_probs=104.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC--CCCCeeEEEEcCCCCEEEEecC---------CCcEE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG--HENEVKSVSWNASGTLLATCGR---------DKSVW 72 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~---------d~~v~ 72 (281)
..+.+++++|+|+++++. ++.|.+||..+++...+..... ....++.++++|+|++.++... ...-.
T Consensus 54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 467899999999976653 5678899987776544433221 1234788999999997775432 23457
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCC--CCCCCCceeeeeeeeccCCccccEEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAE--DTDSDNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
+|.+........ +..+....+.++|+|+++.+ ++.+.++.|.+|++. .......+....+ ..+...+..+
T Consensus 132 l~~~d~~g~~~~---~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~----~~~~~~p~g~ 204 (297)
T 3g4e_A 132 LYSLFPDHHVKK---YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL----EKEEQIPDGM 204 (297)
T ss_dssp EEEECTTSCEEE---EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC----CGGGCEEEEE
T ss_pred EEEEECCCCEEE---EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC----CCCCCCCCee
Confidence 777754432211 22223346789999999855 566667899999864 2211111111111 1223457789
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
++++++.+.++....+.|..||.+.
T Consensus 205 ~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 205 CIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEBTTSCEEEEEETTTEEEEECTTT
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCC
Confidence 9999998888877788899998753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-07 Score=75.78 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=120.6
Q ss_pred cceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCceeee-eee-cC-CCCCeeEEEEcCCCCEEEEecCC-----------
Q 023500 4 RTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECV-ATL-EG-HENEVKSVSWNASGTLLATCGRD----------- 68 (281)
Q Consensus 4 ~~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~~~~-~~~-~~-h~~~v~~v~~~~~~~~l~s~~~d----------- 68 (281)
..+..++++++ |+++++.. .+.|.+|+.. ++.... ... .+ ....+.+++++|+|++.++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 45788999999 77666554 3468889877 554322 111 11 12357899999999988877654
Q ss_pred ----CcEEEEEecCCCeeEEeEeecCCccceeEEEec----CCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeecc
Q 023500 69 ----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH----PTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139 (281)
Q Consensus 69 ----~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~----p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 139 (281)
+.|..++.. ..... +..+......+.|+ |+++.+ ++...++.|.+|+..... .......+. ..
T Consensus 149 ~~~~~~l~~~~~~--g~~~~---~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g--~~~~~~~~~-~~ 220 (314)
T 1pjx_A 149 QEKFGSIYCFTTD--GQMIQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--KIENKKVWG-HI 220 (314)
T ss_dssp SSSCEEEEEECTT--SCEEE---EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT--EEEEEEEEE-EC
T ss_pred cCCCCeEEEECCC--CCEEE---eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC--ccccceEEE-EC
Confidence 345444432 22211 11223346788999 998654 555667899999765211 000011111 11
Q ss_pred CCcc-ccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCC
Q 023500 140 NGHS-STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAA 216 (281)
Q Consensus 140 ~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 216 (281)
.++. ..+..+++++++.++++...++.|..||.+.++.. ..+ ..+...+.++.+++++. +++...
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-----------~~~-~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----------MRI-RCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----------EEE-ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-----------EEE-eCCCCCceeEEECCCCCEEEEEeCC
Confidence 2232 45778999999988888777888999987532210 111 12335677888888764 445555
Q ss_pred CCcEEEEecc
Q 023500 217 DDSVQFFVES 226 (281)
Q Consensus 217 d~~~~~~~~~ 226 (281)
++.+..++..
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 6677777554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-07 Score=75.19 Aligned_cols=220 Identities=10% Similarity=0.003 Sum_probs=126.3
Q ss_pred CCCcEEEEecCCCceeeeeee----cC--CCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcccee
Q 023500 23 FDATTCIWEDVGGDYECVATL----EG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 96 (281)
Q Consensus 23 ~d~~i~lw~~~~~~~~~~~~~----~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~ 96 (281)
+++.|.++|..++++. ..+ .+ .......+.+. +++..++...++.|.+||....+.. ..+. ......
T Consensus 15 ~~~~l~~~d~~t~~~~--~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~---~~i~-~~~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVE--NEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV---GRIT-GFTSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEE--CSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE---EEEE-CCSSEE
T ss_pred CCceEEEEECCCCEEh--hhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE---EEcC-CCCCCc
Confidence 4789999999887642 211 11 11345677774 4556666677899999998766542 2332 234578
Q ss_pred EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeecc-CCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCc
Q 023500 97 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN-NGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADI 174 (281)
Q Consensus 97 ~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~ 174 (281)
.++++|++.++++...++.|.+||..... ....+.... .++...+..+++ .++..+++.. .++.|.++|.+.
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-----~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYE-----ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTE-----EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCe-----EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC
Confidence 89998988655665589999999876532 222222111 011113445666 4444444443 488999999864
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCC-C----------CcEEEEecccCCCcCCccceeeeeec
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA-D----------DSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
.+.. ..+.. ......+.+++++.+..++. + +.+.+++..... . ...+.
T Consensus 162 ~~~~-----------~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----v-~~~~~-- 220 (328)
T 3dsm_A 162 DKVV-----------DELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----V-EKQFK-- 220 (328)
T ss_dssp TEEE-----------EEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----E-EEEEE--
T ss_pred CeEE-----------EEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-----E-EEEEe--
Confidence 3321 11111 12234566677765444333 2 567777554321 1 11111
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......+.++|+|+++.++++.+ .|.+||...
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t 253 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEA 253 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTC
T ss_pred cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCC
Confidence 111235789999998887766544 788898754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-07 Score=76.34 Aligned_cols=248 Identities=15% Similarity=0.056 Sum_probs=126.9
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEecC--C
Q 023500 8 SCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCGR--D 68 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d 68 (281)
.++++|||+++..++ .++.|.+||..+.+. +..+.-. ...-..+.|+|||++++.+.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 389999999776654 367899999887753 3333211 113456899999999887753 6
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
++|.++|+...+. +..+.-. . |....|. ...+++.+.||++.+.+....... ..........-...+.
T Consensus 160 ~~VsVID~~t~~v---v~tI~v~--g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v----~~~~~~~~~~~~~~~~ 228 (386)
T 3sjl_D 160 PAVGVVDLEGKAF---KRMLDVP--D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP----EITHTEVFHPEDEFLI 228 (386)
T ss_dssp CEEEEEETTTTEE---EEEEECC--S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCC----EEEECCCCSCTTSCBC
T ss_pred CeEEEEECCCCcE---EEEEECC--C--cceeecCCCceeEEECCCCCEEEEECCCCCeE----EEeecceecccccccc
Confidence 8999999976543 2222211 1 1122243 346778888898888777542211 0000000000111121
Q ss_pred -EEEEc-cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC-------C
Q 023500 148 -ALSFN-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA-------A 216 (281)
Q Consensus 148 -~~~~~-~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~-------~ 216 (281)
...|. +++++++ .+.+|.+.+.|......................+........+.+++++ ++++.. .
T Consensus 229 ~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 229 NHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp SCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred ccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccC
Confidence 23554 5675544 4457889999875332111100000000000000000111112223322 233211 1
Q ss_pred C--CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEccc
Q 023500 217 D--DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 217 d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~~~ 279 (281)
+ +.+.+++.+.. +.......+ .+++.++++++++ .++++...++.|.++|...
T Consensus 308 ~~~~~V~viD~~t~--------kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 308 TASRFVVVLDAKTG--------ERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp SCEEEEEEEETTTC--------CEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEECCCC--------eEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 1 23444433321 111111112 2578999999986 5666677799999999764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-06 Score=70.11 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=99.6
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-C-CCCeeEEEEcCCCCEEEEecCC----CcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-H-ENEVKSVSWNASGTLLATCGRD----KSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-h-~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~ 77 (281)
..+.+++++|+|+++++. .+ .|.+||..+++...+..... . ...++++.++|+|++.++...+ ....+|.+.
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 457889999999988754 34 48899987776543332211 1 2357899999999977665422 345566654
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCC--CC-CCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAE--DT-DSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~--~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
...... +..+....+.++|+|+++.+ ++.+.++.|.+|+.+ .. .....+....+ ......+..+.+++
T Consensus 168 -~g~~~~---~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~----~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 168 -KGKVTK---LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS----TGIKGGMDGSVCDA 239 (326)
T ss_dssp -TTEEEE---EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC----TTSSSEEEEEEECT
T ss_pred -CCcEEE---eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEEC----CCCCCCCCeeEECC
Confidence 332221 22223346789999999865 455567899999875 22 11111111111 12234567889999
Q ss_pred CCCEEEEeeCCCcEEEEeCC
Q 023500 154 KGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 154 ~~~~l~s~~~d~~i~~w~~~ 173 (281)
++.+.++...++.|..|+.+
T Consensus 240 ~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TSCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEeCCCEEEEECCC
Confidence 99877776667789999763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-07 Score=70.77 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=106.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCC-CCCeeEEEEcCCCCEEEEecC-CCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH-ENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~~~~ 82 (281)
.+.++++.|+|++|+ +.++.+..||. +++. +..+..+ ...+.++.+.|+|+.+++.+. ++.+..++. .++..
T Consensus 38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~--~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l 111 (276)
T 3no2_A 38 ECNSVAATKAGEILF--SYSKGAKMITR-DGRE--LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVL 111 (276)
T ss_dssp CCCEEEECTTSCEEE--ECBSEEEEECT-TSCE--EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEE
T ss_pred CCcCeEECCCCCEEE--eCCCCEEEECC-CCCE--EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEE
Confidence 578899999999998 34678999998 5543 4445543 357889999999999999877 666666653 33322
Q ss_pred EEeEee---cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 83 ECVSVL---QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 83 ~~~~~~---~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.....- ..+......+...++++++++.+.++.|.+|+.+ .. .+-++.. ...+.++...+++..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-----~~w~~~~-----~~~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-----LLNSVKL-----SGTPFSSAFLDNGDCLV 180 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----EEEEEEC-----SSCCCEEEECTTSCEEE
T ss_pred EEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----EEEEEEC-----CCCccceeEcCCCCEEE
Confidence 111110 1222345667788999999999999999999765 22 1222221 12345677788999999
Q ss_pred EeeCCCcEEEEeCCccc
Q 023500 160 SCSDDLTIKIWGADITR 176 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~ 176 (281)
++..++.|..+|.+.++
T Consensus 181 ~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 181 ACGDAHCFVQLNLESNR 197 (276)
T ss_dssp ECBTTSEEEEECTTTCC
T ss_pred EeCCCCeEEEEeCcCCc
Confidence 99888889999876443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-07 Score=75.96 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=127.9
Q ss_pred ccceeEEEEcCCCCEEEEeeC-----CCcEEEEecCCCceeeeeeec----CCCCCeeEEEEcCCC-CEEEEec---CCC
Q 023500 3 TRTVRSCAWSPSGKLLATASF-----DATTCIWEDVGGDYECVATLE----GHENEVKSVSWNASG-TLLATCG---RDK 69 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~-----d~~i~lw~~~~~~~~~~~~~~----~h~~~v~~v~~~~~~-~~l~s~~---~d~ 69 (281)
-..+..++++++|+++++-.. ++.|.+||..+++......+. .+......++++|++ ..+++.. .++
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 356889999999998776543 578999998777532222221 123456899999864 4456655 678
Q ss_pred cEEEEEecCCCeeEEeEeecCCcccee-EEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 70 SVWIWEVMPGNEFECVSVLQGHAQDVK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~~~~v~-~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
.|.+||+..+.. .+.+.+|..... ...+.+++..+.+.+.+++++.|. ..+..
T Consensus 146 ~i~v~d~~~g~~---~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~g 199 (343)
T 2qe8_A 146 ALIRVDLQTGLA---ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNG 199 (343)
T ss_dssp EEEEEETTTCCE---EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEE
T ss_pred eEEEEECCCCCE---EEEecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccce
Confidence 999999875542 333444321110 133445566666666777766551 12567
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcc---cceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEe
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS---WRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV 224 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~ 224 (281)
++|+|+++.|+.+..++. ++|.++...... ..... ....... + +......++++++| ++++...++.+..|+
T Consensus 200 ia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~~-g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 200 IVLDAENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAELGSKIERY-S-EKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEECTTSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHHHHTTCEEE-E-ECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred eEeccCCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhhhhcceEec-c-cCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 999999998888877663 455433211000 00000 0000000 0 11123446667766 455666677888897
Q ss_pred cccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCC
Q 023500 225 ESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD 268 (281)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~ 268 (281)
.... . ...+.. . .+-..+.+++|.+++. ++++.+.
T Consensus 276 ~~~G-----~-~~~~~~-~-~~~~~p~~va~~~~g~-l~v~~~~ 310 (343)
T 2qe8_A 276 SADR-----A-YKLLVT-D-EKLSWTDSFNFGSDGY-LYFDCNQ 310 (343)
T ss_dssp TTTT-----E-EEEEEE-C-GGGSCEEEEEECTTSC-EEEEECC
T ss_pred CCCC-----C-EEEEEE-C-CceecCCeeEECCCCc-EEEEeCc
Confidence 6211 1 111211 1 1234588999999764 6666553
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-07 Score=81.47 Aligned_cols=204 Identities=12% Similarity=0.125 Sum_probs=112.6
Q ss_pred CCCCCeeEEEEcCCCCEEE-----EecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-----
Q 023500 45 GHENEVKSVSWNASGTLLA-----TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----- 114 (281)
Q Consensus 45 ~h~~~v~~v~~~~~~~~l~-----s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~----- 114 (281)
+|...+..++|||||++|+ .|+.+.+|++||+..++.... .+. ......+.|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCCEEEEEEecCccccc
Confidence 3556788899999999887 344456899999987653221 111 1113578899 999988888774
Q ss_pred --------eEEEEeCCCCCCCCceeeeeeeeccCC-ccccEEEEEEccCCCEEEEee----CCCcEEEEeCCccccccCC
Q 023500 115 --------TIKVWWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVSCS----DDLTIKIWGADITRMQSGD 181 (281)
Q Consensus 115 --------~v~~w~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~----~d~~i~~w~~~~~~~~~~~ 181 (281)
.|++|++....... ..+.. ... |...+..+.|+|++++|+... .+..+.++|.+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~-~~v~~----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---- 271 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDD-RLVFG----AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---- 271 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGC-EEEES----CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----
T ss_pred ccccCCCcEEEEEECCCCcccc-eEEEe----cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----
Confidence 48888876543211 11111 112 344567889999999775433 234788887653210
Q ss_pred CCcccceeEEeecccCcceEE-EEeCCCceeeecCCC---CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 182 GYASWRHLCTISGYHDRTIFS-VHWSREGIIASGAAD---DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
.++. +.. +...... +....+.+++....+ ..+..++...... ..... ...|...+. .|++
T Consensus 272 ---~~~~---l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---~~~~~----l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 272 ---PLLT---VQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---AHWRD----LIPERQQVL--TVHS 335 (693)
T ss_dssp ---CCEE---EEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG---GGCEE----EECCCSSCE--EEEE
T ss_pred ---ceEE---EeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---cccEE----EecCCCCEE--EEEE
Confidence 0111 111 1111111 222223344444333 4555554432111 00111 123444444 7888
Q ss_pred CCCeeEEEeCCCC--eEEEEEcc
Q 023500 258 GERRLLASASDDG--MIKIWELA 278 (281)
Q Consensus 258 ~~~~~~~s~~~Dg--~v~iw~~~ 278 (281)
++..++++...|+ .|++|++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTT
T ss_pred ECCEEEEEEEECCeeEEEEEECC
Confidence 8877777777676 47777764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-06 Score=72.20 Aligned_cols=205 Identities=12% Similarity=0.082 Sum_probs=120.8
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC--eEEEEeCCCCCC
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN--TIKVWWAEDTDS 126 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~--~v~~w~~~~~~~ 126 (281)
....++|+|+++++++...++.|+.||...+.. ...... ..... ++|+|+++.++++..++ .|.+++......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 456899999999888888889999999864432 111222 22234 89999999988888766 677776543211
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceE-EEEe
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF-SVHW 205 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 205 (281)
...+..........+.+++++|++..|+.+..++.|..||.+....... ... ...+....... .+.+
T Consensus 207 -----~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~------~~~-~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 207 -----PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI------KQL-ELSGSLGTNPGPYLIY 274 (409)
T ss_dssp -----EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE------EEC-CCCSCCCCSSCCEEEE
T ss_pred -----eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE------ecc-cccCCCCCCccccEEE
Confidence 1111111111234567899999555566677788899998763321100 000 00000001112 6777
Q ss_pred CC-Cc-eeeecCCCCcEEEEecccCCCcCCccceeeeeec-----------cCCCCCeeEEEEcCCCCeeEEEeC-CCCe
Q 023500 206 SR-EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE-----------KAHDMDVNSVQWSPGERRLLASAS-DDGM 271 (281)
Q Consensus 206 ~~-~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~~~~~s~~-~Dg~ 271 (281)
++ ++ ++++-..++.++.++.... ........ ...-.....++++|++. ++++-. .++.
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~ 346 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYC 346 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCE
Confidence 87 34 4555566777887754321 01111100 01123478899999876 777887 8899
Q ss_pred EEEEEcc
Q 023500 272 IKIWELA 278 (281)
Q Consensus 272 v~iw~~~ 278 (281)
|+.|++.
T Consensus 347 I~~~~~~ 353 (409)
T 3hrp_A 347 LRKLDIL 353 (409)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999843
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-07 Score=76.52 Aligned_cols=235 Identities=9% Similarity=0.002 Sum_probs=129.1
Q ss_pred ceeEEEEcCCCCEEEEee--CCCcEEEEecCCCceeee----eeecCCCCCeeEEEEcCCCCEEEEecC-----CCcEEE
Q 023500 5 TVRSCAWSPSGKLLATAS--FDATTCIWEDVGGDYECV----ATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWI 73 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~--~d~~i~lw~~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~~ 73 (281)
....++++|+|+++++.. .++.++||...++..... ....+|-..+.+++++|+|+++++... +..|.+
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~ 97 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA 97 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence 567899999999998863 234356665443332111 111234567899999999887665433 578999
Q ss_pred EEecCCCeeEEeEeec----CCccceeEEEecCCC-CeEEEEe---cCCeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 74 WEVMPGNEFECVSVLQ----GHAQDVKMVQWHPTM-DVLFSCS---YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~~-~~l~s~s---~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
||+..++.... ..+. .+......+++.|++ ..+++.+ .++.|.+|+..... ..+.+ .+|...
T Consensus 98 ~d~~tg~~~~~-~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-----~~r~~----~~~~~~ 167 (343)
T 2qe8_A 98 WDTLNNQLSRV-IYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-----AARVL----QGYPGI 167 (343)
T ss_dssp EETTTTEEEEE-EECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-----EEEEC----TTCTTT
T ss_pred EECCCCeEEEE-EECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-----EEEEe----cCCCcc
Confidence 99865542211 1121 123356889999864 4556655 67899999876432 11111 122111
Q ss_pred EE-EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEE
Q 023500 146 IW-ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF 223 (281)
Q Consensus 146 v~-~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~ 223 (281)
.. ...+.+++..+.+.+.++.++.|.. .+..+++++++ .+..+...+. ++|
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------------------~~~gia~s~dg~~ly~~~~~~~-~l~ 220 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPHL--------------------------GVNGIVLDAENEWLYLSPMHST-SMY 220 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCCC--------------------------CEEEEEECTTSCEEEEEESSCS-EEE
T ss_pred cccccceeECCEEEEeccCCCceeceec--------------------------ccceeEeccCCCEEEEEeCCCC-eEE
Confidence 00 0234456666666677777665521 13456778776 3333333321 344
Q ss_pred ecccCCCcCCcc-ceeeee--eccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 224 VESKDDLIDGPS-YKMLLK--KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+....+..... ...... ...++......+++++++ .++++...++.|.+|+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEET
T ss_pred EEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEEC
Confidence 332110000000 000000 001122345678999986 57888888899999997
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-07 Score=77.46 Aligned_cols=249 Identities=12% Similarity=0.038 Sum_probs=126.8
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeec-C-C-----CCCeeEEEEcCCCCEEEEecC--C
Q 023500 8 SCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLE-G-H-----ENEVKSVSWNASGTLLATCGR--D 68 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~-~-h-----~~~v~~v~~~~~~~~l~s~~~--d 68 (281)
.++++|||+++..+. .++.|.++|..+.+. +..+. + - ...-..+.|+|||++++.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 689999999776665 367899999877653 33332 1 0 122356889999999888764 5
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
++|.+.|+...+.. ..+.-.. +....|++ ..+++.+.||++.+.+...... .......+. .+......
T Consensus 200 ~~VsVID~~t~kvv---~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~---v~~~p~~~ 268 (426)
T 3c75_H 200 PAVGVVDLEGKTFD---RMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFH---TEDELLIN 268 (426)
T ss_dssp CEEEEEETTTTEEE---EEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCS---CTTSCBCS
T ss_pred CeEEEEECCCCeEE---EEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeec---cCCCceee
Confidence 78999998765432 2222110 12233433 3456666677666655522110 000000000 01011112
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecC---------C
Q 023500 148 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA---------A 216 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~---------~ 216 (281)
.+.|.+++..++.....+.+.+.|......................+........+.+++++ .+++.. .
T Consensus 269 ~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 269 HPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp CCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred EeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence 35678888776666777888888864322110000000000000000000000113445443 233321 1
Q ss_pred CCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCC-eeEEEeCCCCeEEEEEccc
Q 023500 217 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWELAN 279 (281)
Q Consensus 217 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~s~~~Dg~v~iw~~~~ 279 (281)
.+.+.+++.... .....+ .-+ .....++|+|+++ .++++...++.|.++|+..
T Consensus 349 s~~VsVID~~T~-----kvv~~I---~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 349 SRFVVVLNAETG-----ERINKI---ELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEEEEEETTTC-----CEEEEE---EEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEECCCC-----eEEEEE---ECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 235666655432 111111 111 1477899999988 6665665799999999764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-06 Score=67.16 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=93.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeee-eecCC-CCCeeEEEEcCCCCEEEE----ecC----------
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA-TLEGH-ENEVKSVSWNASGTLLAT----CGR---------- 67 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~-~~~~h-~~~v~~v~~~~~~~~l~s----~~~---------- 67 (281)
..+..++++++|+++++...++.|.+|+.. ++...+. ...+. ...++.+++.|+|++.+| |..
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 457789999999988776666789999875 4433222 11211 134678999999998887 332
Q ss_pred ---CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeeec
Q 023500 68 ---DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 68 ---d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
.+.|..++...+.. ..+ . .....+.++|+|+++.++.+... +.|.+|++...... ....+...
T Consensus 165 ~~~~~~v~~~d~~~g~~-~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~---~~~~~~~~ 236 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPL-QRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH---DRRHFASV 236 (305)
T ss_dssp SSSCEEEEEECSSSCCC-EEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE---EEEEEECC
T ss_pred ccCCCeEEEEcCCCCcE-EEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc---CCeEEEEC
Confidence 13444444432322 111 1 23346789999999977666554 68988877542200 01111111
Q ss_pred cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 139 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
....+..+++++++.+.+ +..++ |.+|+.+
T Consensus 237 ---~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 237 ---PDGLPDGFCVDRGGWLWS-SSGTG-VCVFDSD 266 (305)
T ss_dssp ---SSSCCCSEEECTTSCEEE-CCSSE-EEEECTT
T ss_pred ---CCCCCCeEEECCCCCEEE-ecCCc-EEEECCC
Confidence 123345688899998544 44554 8888764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-08 Score=80.51 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=90.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
++..+++++.|+.|..||..+++... .+.. +.+.+..+.+++..+++++.|+.|..||..+++.. ..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W--~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW--TLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE--EEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS---EECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE--EecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee---eeeeccCc
Confidence 57788899999999999988886533 3333 45555556677888888899999999998766532 22222211
Q ss_pred -ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 94 -DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 94 -~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
.+.+......+..+++++.|+.++.||.++... .| .+. .+. ...++|++..+++++.|+.+..||.
T Consensus 81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~-~w----~~~----~~~----~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK-QQ----TLS----SAF----ADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp HHHTTCSCC-----CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCS
T ss_pred cccccCceEecCCEEEEEeCCCEEEEEECCCCcE-EE----Eec----CCC----cccccccCCEEEEEecCCEEEEEEC
Confidence 111100011345678888999999998775431 11 111 111 1344567788999999999999987
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCC----CceeeecCCCCcEEEEeccc
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR----EGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~d~~~~~~~~~~ 227 (281)
+.++.. |+.. .... .. ..... ++.++.++.++.+..|+...
T Consensus 148 ~tG~~~-------W~~~--~~~~-~~----~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 148 KTRELR-------WNAT--YFDY-AA----SLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp SSSSCC-------CEEE--EEEE-CC----BCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred CCCCEE-------EeEe--cccc-cC----ccccCCccccceEEEECCCCEEEEEECCC
Confidence 654321 2211 1100 11 11122 25566677788888886543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-05 Score=62.54 Aligned_cols=237 Identities=11% Similarity=0.086 Sum_probs=130.5
Q ss_pred CCCCEE-EEeeCCCcEEEEecCCC--ceeeeeeec--------CCCCCeeEEEEcCCCCEEEEecCC------CcEEEEE
Q 023500 13 PSGKLL-ATASFDATTCIWEDVGG--DYECVATLE--------GHENEVKSVSWNASGTLLATCGRD------KSVWIWE 75 (281)
Q Consensus 13 ~~~~~l-~tg~~d~~i~lw~~~~~--~~~~~~~~~--------~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~ 75 (281)
+++++| ++|..++.|.++|..+. +.+..++++ +.. .=..+...|+| .++++..+ +.+.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 778765 56778889999997543 234445542 111 22356678999 77776555 7899998
Q ss_pred ecCCCeeEEeEeecC--C-ccceeEEEecCCCCeEEEEe-------------------cCCeEEEEeCCCCCCCCceeee
Q 023500 76 VMPGNEFECVSVLQG--H-AQDVKMVQWHPTMDVLFSCS-------------------YDNTIKVWWAEDTDSDNWHCVQ 133 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~--~-~~~v~~v~~~p~~~~l~s~s-------------------~d~~v~~w~~~~~~~~~~~~~~ 133 (281)
....+. +..+.. . ...-..+-|+|+++.+++.. .+.+|.+|++... +.+.
T Consensus 171 ~~T~~v---~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~ 242 (462)
T 2ece_A 171 HYSFEP---LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIH 242 (462)
T ss_dssp TTTCCE---EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEE
T ss_pred CCCCeE---EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEee
Confidence 765543 333431 1 12234578899999888875 3689999988753 2333
Q ss_pred eeeeccCCccccEEEEEE--ccCCCEEEEee------CCCcEEEEeCCccccccCCC--CcccceeEEee----cc--cC
Q 023500 134 TISESNNGHSSTIWALSF--NAKGDKLVSCS------DDLTIKIWGADITRMQSGDG--YASWRHLCTIS----GY--HD 197 (281)
Q Consensus 134 ~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~------~d~~i~~w~~~~~~~~~~~~--~~~~~~~~~~~----~~--~~ 197 (281)
++.... .......+.| +|++++++.+. .+++|.+|..+.+.....+- .........+. .+ ..
T Consensus 243 tI~vg~--~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~ 320 (462)
T 2ece_A 243 SLTLGE--ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP 320 (462)
T ss_dssp EEESCT--TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred EEecCC--CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence 443211 1123445666 99998776665 56677766443111100000 00000000000 00 01
Q ss_pred cceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeeeccC-------C------CCCeeEEEEcCCCCee
Q 023500 198 RTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA-------H------DMDVNSVQWSPGERRL 262 (281)
Q Consensus 198 ~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h------~~~v~~~~~~~~~~~~ 262 (281)
.....+.+++++ ++++.-..+.+.+|++.... . . +.......+ | ......++++|+|+++
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~--~-~--~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF--K-P--VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT--S-C--EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC--C-c--EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 234566777776 45666667899999875211 1 1 111111111 1 1135789999999988
Q ss_pred EEEe
Q 023500 263 LASA 266 (281)
Q Consensus 263 ~~s~ 266 (281)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-05 Score=62.99 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=93.8
Q ss_pred EEcCCCCEEEEeeC-----CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEE
Q 023500 10 AWSPSGKLLATASF-----DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIW 74 (281)
Q Consensus 10 ~~~~~~~~l~tg~~-----d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w 74 (281)
...|+++.+..... ++.+.+.|..+.+. +..+..-..+ . ++++|||++++.++ .++.|.+|
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v--~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV--IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE--EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE--EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 45688887666554 67899999877653 4444433334 3 99999999887665 36789999
Q ss_pred EecCCCeeEEeEeecC-C---ccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 75 EVMPGNEFECVSVLQG-H---AQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~---~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
|....+....+..-.+ + ...-..+.++|++++++.+.. +++|.++|..+.. .+.++... . + .
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-----vv~tI~v~-----g-~-~ 182 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-----FKRMLDVP-----D-C-Y 182 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC-----S-E-E
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-----EEEEEECC-----C-c-c
Confidence 9876654322222110 0 123567899999998887764 6899999887642 33333211 1 1 1
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
..+......+++.+.||.+.+.+.+
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECC
T ss_pred eeecCCCceeEEECCCCCEEEEECC
Confidence 2222233566677778888777765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00033 Score=57.69 Aligned_cols=144 Identities=8% Similarity=0.022 Sum_probs=89.2
Q ss_pred EcCCCCEEEEeeC--CC---cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEE
Q 023500 11 WSPSGKLLATASF--DA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWE 75 (281)
Q Consensus 11 ~~~~~~~l~tg~~--d~---~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~ 75 (281)
..|+++++..... .. .|.++|..+++. +..+..-..+ .++++|||++++.+. .++.|.++|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~--~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI--LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeE--EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 3467776655543 22 789999877653 4454432333 899999999988775 367899999
Q ss_pred ecCCCeeEEeEee-cCC---ccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeee-eeeccCCccccEEE
Q 023500 76 VMPGNEFECVSVL-QGH---AQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQT-ISESNNGHSSTIWA 148 (281)
Q Consensus 76 ~~~~~~~~~~~~~-~~~---~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~ 148 (281)
....+....+... ..+ ...-..+.|+|++++++.++. +++|.++| .... .+.. +.. .. +
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----~~~~~i~~-----~~---~ 169 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----SDDQLLSS-----PT---C 169 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----EEeEEcCC-----Cc---e
Confidence 8654432222111 000 122457899999999988874 47899998 5432 2222 211 11 2
Q ss_pred EEEccCC-CEEEEeeCCCcEEEEeC
Q 023500 149 LSFNAKG-DKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 149 ~~~~~~~-~~l~s~~~d~~i~~w~~ 172 (281)
+.+.|++ ..+++.+.||.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC
Confidence 3444554 45666778999988887
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=8.8e-06 Score=66.81 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=68.0
Q ss_pred CEEEEeeCCC----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEEecCCCe
Q 023500 16 KLLATASFDA----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVMPGNE 81 (281)
Q Consensus 16 ~~l~tg~~d~----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~~~~~~~ 81 (281)
+.+++-..++ .+.+.|..+.+. +.++..-..+ .+.++||+++++.+. .+++|.+||+...+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v--~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVT--LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEE--EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred eEEEECCccCCccceEEEEECCCCeE--EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3555655555 777999877653 4454432345 699999999887775 368999999987664
Q ss_pred eEEeEee-cCC---ccceeEEEecCCCCeEEEEec--CCeEEE--EeCC
Q 023500 82 FECVSVL-QGH---AQDVKMVQWHPTMDVLFSCSY--DNTIKV--WWAE 122 (281)
Q Consensus 82 ~~~~~~~-~~~---~~~v~~v~~~p~~~~l~s~s~--d~~v~~--w~~~ 122 (281)
...+..- ..+ ...-..+.++|++++++.+.. +..+.+ +|..
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~ 157 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchh
Confidence 3222211 000 123568899999999888875 357877 7654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00066 Score=54.53 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=127.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-----------------CCCCeeEEEEcC-CCCEEEEecC
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-----------------HENEVKSVSWNA-SGTLLATCGR 67 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-----------------h~~~v~~v~~~~-~~~~l~s~~~ 67 (281)
...++++++|+++.++..++.|..|+..++.......... .......+++.+ +|+++++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~- 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC- 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence 3467899999977788888999999876654432211000 113467899998 665555433
Q ss_pred CCcEEEEEecCCCeeEEeE-eecCC-ccceeEEEecC-CCCeEEEEec-----------------CCeEEEEeCCCCCCC
Q 023500 68 DKSVWIWEVMPGNEFECVS-VLQGH-AQDVKMVQWHP-TMDVLFSCSY-----------------DNTIKVWWAEDTDSD 127 (281)
Q Consensus 68 d~~v~~w~~~~~~~~~~~~-~~~~~-~~~v~~v~~~p-~~~~l~s~s~-----------------d~~v~~w~~~~~~~~ 127 (281)
.+.+..+|...+ ...... ...+. ....+.+++.| ++.++++... ++.|..++.....
T Consensus 100 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-- 176 (322)
T 2fp8_A 100 YYHLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-- 176 (322)
T ss_dssp TTEEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--
T ss_pred CCCEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--
Confidence 344777764322 111111 11111 12357788999 8887776433 2566666553321
Q ss_pred CceeeeeeeeccCCccccEEEEEEccCCCEEEEe-eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC
Q 023500 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
+..+... ......++|+|+++.|+.+ ...+.|..|+.+.... ...+.... ... ...+..+
T Consensus 177 ----~~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~------~~~~~~~~----~~g-P~gi~~d 237 (322)
T 2fp8_A 177 ----TTLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK------GTAEVLVK----IPN-PGNIKRN 237 (322)
T ss_dssp ----EEEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT------TCEEEEEE----CSS-EEEEEEC
T ss_pred ----EEEeccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC------CccceEEe----CCC-CCCeEEC
Confidence 1111110 1234578999999855544 5567898888753210 00111111 112 4566777
Q ss_pred CCceeeecC-C----------CCcEEEEecccCCCcCCccceeeeeeccCC-CCCeeEEEEcCCCCeeEEEeCCCCeEEE
Q 023500 207 REGIIASGA-A----------DDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKI 274 (281)
Q Consensus 207 ~~~~~~~~~-~----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~s~~~Dg~v~i 274 (281)
++|.+..+. . .+.+..++... .... .+....+. -..++.+.+. +..++++....+.|..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G------~~~~-~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG------NILE-VIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGI 308 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTS------CEEE-EEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEE
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCC------CEEE-EEECCCCCccccceEEEEe--CCEEEEeecCCCceEE
Confidence 776433332 2 23444553321 1111 11111111 2346667764 3467888878888998
Q ss_pred EEcc
Q 023500 275 WELA 278 (281)
Q Consensus 275 w~~~ 278 (281)
+++.
T Consensus 309 ~~~~ 312 (322)
T 2fp8_A 309 LVYD 312 (322)
T ss_dssp EEC-
T ss_pred Eecc
Confidence 8875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00056 Score=53.25 Aligned_cols=209 Identities=9% Similarity=0.063 Sum_probs=118.2
Q ss_pred eeeeecCCCCC--eeEEEEcCCCCEEEEecC--CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC
Q 023500 39 CVATLEGHENE--VKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 39 ~~~~~~~h~~~--v~~v~~~~~~~~l~s~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
.+.++ .|... ...+.|+|++.+.++.+. +..|.+.|+..++....+. +..+ .....+.+.. +.++++...++
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~g-~~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLLN-EKLYQVVWLKN 86 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEET-TEEEEEETTCS
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEeC-CEEEEEEecCC
Confidence 34454 35543 478999998766666554 6799999998776432221 2221 2223444443 23455555678
Q ss_pred eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec
Q 023500 115 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG 194 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
.+.++|..+. +.+.++... .+ . ...++++++.|+.+..++++.++|.+..+.. ..+..
T Consensus 87 ~v~viD~~t~-----~v~~~i~~g-~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-----------~~I~V 144 (266)
T 2iwa_A 87 IGFIYDRRTL-----SNIKNFTHQ-MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLI-----------KKHNV 144 (266)
T ss_dssp EEEEEETTTT-----EEEEEEECC-SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEE-----------EEEEC
T ss_pred EEEEEECCCC-----cEEEEEECC-CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEE-----------EEEEE
Confidence 9999987643 233444321 11 1 1234567776666667889999988643321 11111
Q ss_pred c-cCc---ceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee-c------cCC--CCCeeEEEEcCCCCe
Q 023500 195 Y-HDR---TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK-E------KAH--DMDVNSVQWSPGERR 261 (281)
Q Consensus 195 ~-~~~---~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~h--~~~v~~~~~~~~~~~ 261 (281)
. ... .+..+.+.....+++....+.+.+.+.....+. ..+-.. . ..+ ....+.++|+|++++
T Consensus 145 g~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~-----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLL-----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR 219 (266)
T ss_dssp EETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEE-----EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred CCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEE-----EEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence 1 111 234555663334555555677777766543221 111100 0 011 134689999999989
Q ss_pred eEEEeCCCCeEEEEEcc
Q 023500 262 LLASASDDGMIKIWELA 278 (281)
Q Consensus 262 ~~~s~~~Dg~v~iw~~~ 278 (281)
+++++...+.|...++.
T Consensus 220 lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEETTCSEEEEEEEE
T ss_pred EEEECCCCCeEEEEEEe
Confidence 99999999998887764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-05 Score=67.94 Aligned_cols=203 Identities=11% Similarity=0.115 Sum_probs=104.8
Q ss_pred ceeEEEEc-CCCCEEEEeeC-CC----cEEEEecCCC-ceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----CcEE
Q 023500 5 TVRSCAWS-PSGKLLATASF-DA----TTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVW 72 (281)
Q Consensus 5 ~i~~~~~~-~~~~~l~tg~~-d~----~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~ 72 (281)
.+...+|| |||++||-+.. +| .|.++|..++ +.. ...+. .....+.|+|||+.|+-...| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 46678999 99998874432 22 4888988776 421 11111 123468899999887766654 2466
Q ss_pred EEEecCCCeeEEeEeec-CCccceeEEEecCCCCeEEEEecC---CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 73 IWEVMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
++++..+.... ..++. ........+.|+|++++|+..+.+ ..|.++++..... .. .+..+. .......+.
T Consensus 251 ~~~lgt~~~~~-~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~-~~~~l~---~~~~~~~~s 324 (751)
T 2xe4_A 251 RHVMGKLQSED-VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HN-TLEIVR---PREKGVRYD 324 (751)
T ss_dssp EEETTSCGGGC-EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CC-CEEESS---CCCTTCCEE
T ss_pred EEECCCCchhc-EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-Cc-eeEEee---cCCCCceEE
Confidence 66664432111 11222 222345678999999987655533 3566776654311 11 001111 122334455
Q ss_pred EEEccCCCEEEEeeCC--CcEEEEeCCccccccCCCCcccce-eEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 149 LSFNAKGDKLVSCSDD--LTIKIWGADITRMQSGDGYASWRH-LCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d--~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
+.|+..+.+++....+ +..++|..+.... ..++. +. ....+..+..+.+..+.++++...++..+++..
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~------~~~~~~li--~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQP------SDWSHVLV--DHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTST------TCCCCEEE--CCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc------ccceeeEE--CCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence 6655444444444443 4455553332110 01121 11 111122445566666666777777776666644
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00011 Score=61.53 Aligned_cols=143 Identities=9% Similarity=0.048 Sum_probs=85.6
Q ss_pred CCCCEEE-EeeCC----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CCCcEEEEEec
Q 023500 13 PSGKLLA-TASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVM 77 (281)
Q Consensus 13 ~~~~~l~-tg~~d----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~~w~~~ 77 (281)
|+++.+. +...+ +.|.++|..+.+. +..+.--..+ .+.++|||++++.+. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v--v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI--LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE--EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE--EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 3566444 43333 6899999887754 4444422344 799999999887765 46789999987
Q ss_pred CCCeeEEeEee-cC---CccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 78 PGNEFECVSVL-QG---HAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 78 ~~~~~~~~~~~-~~---~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
..+....+..- .. ....-..+.++|++++++.+.. +++|.+.|..... .+.++... . +...
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-----vv~~I~v~-----g---~~~~ 224 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-----FDRMLDVP-----D---CYHI 224 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC-----S---EEEE
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-----EEEEEEcC-----C---ceee
Confidence 66543222211 00 0123467889999999888774 5789999876542 23333211 1 1122
Q ss_pred ccCC-CEEEEeeCCCcEEEEeC
Q 023500 152 NAKG-DKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 152 ~~~~-~~l~s~~~d~~i~~w~~ 172 (281)
.|++ ..+++.+.||.+.+.+.
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEEC
T ss_pred ccCCCcEEEEEcCCCCEEEEEC
Confidence 3332 44555666776666655
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00067 Score=51.89 Aligned_cols=210 Identities=11% Similarity=0.114 Sum_probs=109.3
Q ss_pred eeeeeecCCCCC--eeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC
Q 023500 38 ECVATLEGHENE--VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113 (281)
Q Consensus 38 ~~~~~~~~h~~~--v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d 113 (281)
+.+.++ .|+.. ...+.|++ +.+..+.|.++ .|+..|+.+++....+ .+..+ .--..+.... +.++.....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~-~fgeGi~~~~-~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP-YFGAGIVAWR-DRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT-CCEEEEEEET-TEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC-cceeEEEEeC-CEEEEEEeeC
Confidence 345555 57654 44888986 66677777765 8999999877643322 12221 1112223322 3345556678
Q ss_pred CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee
Q 023500 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 193 (281)
+.+.++|..+. +.+.++.... .-+.++ +++..|+....++.|.++|.+..+.. ..+.
T Consensus 85 ~~v~v~D~~tl-----~~~~ti~~~~-----~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~-----------~~I~ 141 (243)
T 3mbr_X 85 HEGFVYDLATL-----TPRARFRYPG-----EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV-----------GSIK 141 (243)
T ss_dssp SEEEEEETTTT-----EEEEEEECSS-----CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEE-----------EEEE
T ss_pred CEEEEEECCcC-----cEEEEEeCCC-----CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE-----------EEEE
Confidence 89999987653 2344443221 123444 45666666666889999987653321 1111
Q ss_pred c-ccC---cceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeec----cCCCCCeeEEEEcCCCCeeEEE
Q 023500 194 G-YHD---RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE----KAHDMDVNSVQWSPGERRLLAS 265 (281)
Q Consensus 194 ~-~~~---~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~s 265 (281)
. .+. ..+..+.+.....++.......+.+.+...+.+........+.... ..-..-.+.|+++|++.++++|
T Consensus 142 V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp CEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 1 011 1223445544444555545566666655433221100000000000 0112346899999988888888
Q ss_pred eCCCCeEEEEEc
Q 023500 266 ASDDGMIKIWEL 277 (281)
Q Consensus 266 ~~~Dg~v~iw~~ 277 (281)
|-. .=++|.+
T Consensus 222 GK~--wp~~~~v 231 (243)
T 3mbr_X 222 GKR--WPMLYEI 231 (243)
T ss_dssp ETT--CSEEEEE
T ss_pred CCC--CCcEEEE
Confidence 743 3344443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00036 Score=53.93 Aligned_cols=208 Identities=13% Similarity=0.171 Sum_probs=108.8
Q ss_pred eeeeecCCCCCe--eEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecC
Q 023500 39 CVATLEGHENEV--KSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD 113 (281)
Q Consensus 39 ~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d 113 (281)
.+.++ .|+..- ..+.|+ ++.+..+.|.++ .|++.|+.+++....+. +. .........+.++. +.+...+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~---~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG---KRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC---TTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC---CccceeEEEEeCCEEEEEEeeC
Confidence 34455 466544 688888 677778888877 89999998776433221 21 12222222233444 4445567
Q ss_pred CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee
Q 023500 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 114 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 193 (281)
+.+.++|.++.. .+.++.... .-+.++ ++++.|+....+++|.++|.+..+.. ..+.
T Consensus 107 ~~v~v~D~~t~~-----~~~ti~~~~-----eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~-----------~~I~ 163 (262)
T 3nol_A 107 GLGFVWNIRNLR-----QVRSFNYDG-----EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPV-----------RTIT 163 (262)
T ss_dssp SEEEEEETTTCC-----EEEEEECSS-----CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEE-----------EEEE
T ss_pred CEEEEEECccCc-----EEEEEECCC-----CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEE-----------EEEE
Confidence 899999876542 334443211 112333 56676766666788999987643321 1111
Q ss_pred c-ccCcc---eEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee---ccCCCCCeeEEEEcCCCCeeEEEe
Q 023500 194 G-YHDRT---IFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK---EKAHDMDVNSVQWSPGERRLLASA 266 (281)
Q Consensus 194 ~-~~~~~---v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~s~ 266 (281)
. ....+ +..+.+....+++.....+.+.+.+...+.+........+... ...-..-.+.|+|+|+++.++++|
T Consensus 164 V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 164 VTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 1 11122 2235555333455554566777775543322110000000000 001123468999999988888887
Q ss_pred CCCCeEEEEEc
Q 023500 267 SDDGMIKIWEL 277 (281)
Q Consensus 267 ~~Dg~v~iw~~ 277 (281)
- ..=++|.+
T Consensus 244 K--~Wp~~~ev 252 (262)
T 3nol_A 244 K--LWPKVFEI 252 (262)
T ss_dssp T--TCSEEEEE
T ss_pred C--CCCceEEE
Confidence 4 34344443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0017 Score=54.22 Aligned_cols=202 Identities=12% Similarity=0.144 Sum_probs=112.8
Q ss_pred EEc--CCCCEE-EEecCCCcEEEEEecCC-CeeEEeEeec-------CCccceeEEEecCCCCeEEEEecC------CeE
Q 023500 54 SWN--ASGTLL-ATCGRDKSVWIWEVMPG-NEFECVSVLQ-------GHAQDVKMVQWHPTMDVLFSCSYD------NTI 116 (281)
Q Consensus 54 ~~~--~~~~~l-~s~~~d~~v~~w~~~~~-~~~~~~~~~~-------~~~~~v~~v~~~p~~~~l~s~s~d------~~v 116 (281)
.++ ++.++| +++..+.+|.+.|+... ...+...++. .....-..+...|++ +++++..+ +.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 677765 56777899999998633 2233344442 011123445667999 77776666 688
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEee-------------------CCCcEEEEeCCccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCS-------------------DDLTIKIWGADITR 176 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~-------------------~d~~i~~w~~~~~~ 176 (281)
.+.|.++.+ .+.+.... ... .--..+.|+|+++.+++.. .+..|.+||....+
T Consensus 167 ~vlD~~T~~-----v~~~~~~~--~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 167 LMLDHYSFE-----PLGKWEID--RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEECTTTCC-----EEEECCSB--CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEECCCCe-----EEEEEccC--CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 888765432 23333211 111 1123577899999888874 36789999986432
Q ss_pred cccCCCCcccceeEEeecc-cCcceEEEE--eCCCc--eeeecC-----CCCcEEEEecccCCCcCCccceeee--eec-
Q 023500 177 MQSGDGYASWRHLCTISGY-HDRTIFSVH--WSREG--IIASGA-----ADDSVQFFVESKDDLIDGPSYKMLL--KKE- 243 (281)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~--~~~~~--~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~--~~~- 243 (281)
. ..++... .......+. ++|++ .++++. .++++.+|....+. .. ....+ ...
T Consensus 240 ~-----------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~---~~~vIdi~~~~ 304 (462)
T 2ece_A 240 R-----------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WN---AEKVIEIPAEP 304 (462)
T ss_dssp E-----------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EE---EEEEEEECCEE
T ss_pred E-----------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-ee---EEEEEeCCCcc
Confidence 1 1111111 112233343 47765 233333 44566554332210 00 00000 000
Q ss_pred -c-----------CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 244 -K-----------AHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 244 -~-----------~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. +-......+.++|++++++++.-..+.|.+||+.
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 0 0013467899999999999998889999999985
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00062 Score=54.52 Aligned_cols=217 Identities=11% Similarity=-0.000 Sum_probs=119.3
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
+..+..++.++.+..+|.. +.. ......+...+.++...+++. +..++.++.+..+|.. +... .........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~---~~~~~~~~~ 178 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTE--KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK---WRFKTNDAI 178 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE---EEEECSSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCE--EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe---EEEecCCCc
Confidence 3445567778889999876 443 223333445566667776776 4456677889888876 4322 222223445
Q ss_pred eeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCc
Q 023500 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 174 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~ 174 (281)
+.++...+++.+++++ +.+..++ .... ...... .....+.++...+++. |..++.++.+..++.+.
T Consensus 179 ~~~~~~d~~g~l~v~t---~~l~~~d-~~g~-----~~~~~~----~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS---DKVYAIN-PDGT-----EKWNFY----AGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp CSCCEECTTCCEEEES---SSEEEEC-TTSC-----EEEEEC----CSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred eeeeEEcCCCEEEEEe---CEEEEEC-CCCc-----EEEEEc----cCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 6667777777765554 7788886 2211 111111 1123466677777764 55566677787776432
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEE
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 254 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 254 (281)
... ..+.. ....+..+...+++.+..++.++.+..++... .. ... .......+.++.
T Consensus 245 ~~~------------~~~~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g------~~---~~~-~~~~~~~~~~~~ 301 (330)
T 3hxj_A 245 TEK------------WRFKT-GKRIESSPVIGNTDTIYFGSYDGHLYAINPDG------TE---KWN-FETGSWIIATPV 301 (330)
T ss_dssp CEE------------EEEEC-SSCCCSCCEECTTSCEEEECTTCEEEEECTTS------CE---EEE-EECSSCCCSCCE
T ss_pred CEe------------EEeeC-CCCccccceEcCCCeEEEecCCCCEEEECCCC------cE---EEE-EEcCCccccceE
Confidence 111 01110 11112223345577777778787777775321 11 111 112234566777
Q ss_pred EcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 255 WSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 255 ~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+++. ++ .++.+|.+++....
T Consensus 302 ~d~~g~-l~-~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 302 IDENGT-IY-FGTRNGKFYALFNL 323 (330)
T ss_dssp ECTTCC-EE-EECTTSCEEEEEC-
T ss_pred EcCCCE-EE-EEcCCCeEEEEecc
Confidence 767654 44 57889999887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00057 Score=59.01 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=113.3
Q ss_pred CCCEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEE-c-CCCCEEEEec------------------CCCcEE
Q 023500 14 SGKLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSW-N-ASGTLLATCG------------------RDKSVW 72 (281)
Q Consensus 14 ~~~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~-~-~~~~~l~s~~------------------~d~~v~ 72 (281)
||+++.....+ +.|.+-|..+.+...+..+. .......+++ + |++.+++.++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 77776655554 46888888776432222322 2345778888 5 9999988774 245677
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC--------------------------------------
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-------------------------------------- 114 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-------------------------------------- 114 (281)
+.|....+....+. .+. .-..+..+|++.++++++.+.
T Consensus 179 vID~~t~~v~~qI~--Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKWEVAWQVL--VSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTTEEEEEEE--ESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCCeEEEEEE--eCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 77775433221221 111 345677899999998888664
Q ss_pred eEEEEeCCCCCCCCcee-eeeeeeccCCccccEEEEEEccCCCEEEEe-eCCCcEEEEeCCccccccCCCCcccc-eeEE
Q 023500 115 TIKVWWAEDTDSDNWHC-VQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWR-HLCT 191 (281)
Q Consensus 115 ~v~~w~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~ 191 (281)
.|.+.|..... .+. +..+... ..+.++.++|||++++.. ..+.++.++|.+..+......+.... ....
T Consensus 255 ~V~VID~~~~~---~~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 255 GVKVVDGRKEA---SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TEEEEECSGGG---CCSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred cEEEEeCcccC---CceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 23333333210 001 1122211 234578999999976554 46789999998743210000000000 1111
Q ss_pred eecccCcceEEEEeCCCce-eeecCCCCcEEEEeccc
Q 023500 192 ISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESK 227 (281)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~ 227 (281)
. .-......+.|+++|. +++...+..+..|+...
T Consensus 327 v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 P--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp C--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred c--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1 1234567788998885 34666788999998754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00066 Score=60.51 Aligned_cols=156 Identities=6% Similarity=0.062 Sum_probs=86.5
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCC--CCeeEEEEcCCCCEEEEec------CCCcEEEEEecCCCeeEE
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLE-GHE--NEVKSVSWNASGTLLATCG------RDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~--~~v~~v~~~~~~~~l~s~~------~d~~v~~w~~~~~~~~~~ 84 (281)
++..+..++.|+.|..+|..+++........ ... ..+.+--.- .+..++.++ .++.|..+|..+++....
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3566777888999999999887653322221 100 112111011 234444443 268999999987765332
Q ss_pred eEeecCC-----------------------------ccceeEEEecCCCCeEEEEecCC-------------------eE
Q 023500 85 VSVLQGH-----------------------------AQDVKMVQWHPTMDVLFSCSYDN-------------------TI 116 (281)
Q Consensus 85 ~~~~~~~-----------------------------~~~v~~v~~~p~~~~l~s~s~d~-------------------~v 116 (281)
....... ......+.+.|+..+++.++.++ +|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 2211110 01113567888888888777664 47
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCc-------cccEEEEEEccCC---CEEEEeeCCCcEEEEeCCcccc
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGH-------SSTIWALSFNAKG---DKLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~---~~l~s~~~d~~i~~w~~~~~~~ 177 (281)
..+|.++.. ..|+ ++. ..| ...+..+....++ ..++.++.+|.+.++|.+.++.
T Consensus 286 ~AlD~~TG~-~~W~----~~~--~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 286 VALDPDTGK-YKWH----YQE--TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp EEECTTTCC-EEEE----EES--STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEECCCCC-EEEE----Eec--CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 777665542 1111 110 011 1222233444466 6789999999999999876654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.002 Score=49.83 Aligned_cols=207 Identities=12% Similarity=0.122 Sum_probs=111.1
Q ss_pred eeeecCCCCCe--eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEE
Q 023500 40 VATLEGHENEV--KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 40 ~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
+.++ .|+..- ..+.|+ ++.+..+.+.++.|++.|+.+++....+ +.. ..--..+.... +.++.+...++.+.
T Consensus 46 v~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 46 IREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEEeC-CEEEEEEccCCEEE
Confidence 3444 455433 578887 4667788899999999999877654333 332 11112344433 23455556788999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-cc
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YH 196 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~ 196 (281)
++|.++. +.+.++... + .-+.++ ++++.|+....+++|.++|.+..+.. ..+.. ..
T Consensus 120 V~D~~Tl-----~~~~ti~~~--~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-----------~~I~V~~~ 176 (268)
T 3nok_A 120 TWSGMPP-----QRERTTRYS--G---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-----------GAVQVKLR 176 (268)
T ss_dssp EEETTTT-----EEEEEEECS--S---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEE-----------EEEECEET
T ss_pred EEECCcC-----cEEEEEeCC--C---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-----------EEEEeCCC
Confidence 9987654 234444321 1 113344 56777777777889999997654321 11111 01
Q ss_pred Cc---ceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeee----ccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 197 DR---TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK----EKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 197 ~~---~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
.. .+..+.|....+++.......+.+.+...+.+........+... ...-..-.+.|+|+|++.++++||-.
T Consensus 177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~- 255 (268)
T 3nok_A 177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL- 255 (268)
T ss_dssp TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT-
T ss_pred CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC-
Confidence 11 22345555444455555566777775544322110000000000 00112346899999988888888743
Q ss_pred CeEEEEEc
Q 023500 270 GMIKIWEL 277 (281)
Q Consensus 270 g~v~iw~~ 277 (281)
.=++|.+
T Consensus 256 -Wp~~~ev 262 (268)
T 3nok_A 256 -WPRLFEV 262 (268)
T ss_dssp -CSEEEEE
T ss_pred -CCceEEE
Confidence 3344443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0014 Score=50.68 Aligned_cols=155 Identities=9% Similarity=0.094 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCEEEEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCee
Q 023500 6 VRSCAWSPSGKLLATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~~ 82 (281)
...+.|+ ++.++.+.+.+| .|+.+|..+++......+. .........++++.|. ..-.++.+.++|....+..
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 4567888 677778887776 8999999888653322222 3334433344455544 4456889999998766543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~ 161 (281)
..+. ..+ ....+.+++..|+.+..+++|.++|.++.. ...++.....+.+ ..++.+.|. +++..+..
T Consensus 121 ~ti~-~~~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-----v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~ 188 (262)
T 3nol_A 121 RSFN-YDG-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-----PVRTITVTAHGEELPELNELEWV-DGEIFANV 188 (262)
T ss_dssp EEEE-CSS-----CCCCEEECSSCEEECCSSSEEEEECTTTCS-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEE-CCC-----CceEEecCCCEEEEECCCCeEEEEcCCCCe-----EEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence 2221 112 222233566766666667788888766532 2333332211222 334567775 66666666
Q ss_pred eCCCcEEEEeCCccc
Q 023500 162 SDDLTIKIWGADITR 176 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~ 176 (281)
-.+..|.+.|.+.++
T Consensus 189 w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 189 WQTNKIVRIDPETGK 203 (262)
T ss_dssp TTSSEEEEECTTTCB
T ss_pred ccCCeEEEEECCCCc
Confidence 567789888887554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0035 Score=50.25 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred ceeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeee-ecCC-CCCeeEEEEcC-CCCEEEEecC-------------
Q 023500 5 TVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVAT-LEGH-ENEVKSVSWNA-SGTLLATCGR------------- 67 (281)
Q Consensus 5 ~i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h-~~~v~~v~~~~-~~~~l~s~~~------------- 67 (281)
....+++.+ +|+++++ ...+.+..++..++....+.. ..+. -...+.+++.| +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEE-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 367789998 6766654 444557788765543222221 1111 12467899999 9987776432
Q ss_pred ----CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCc
Q 023500 68 ----DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH 142 (281)
Q Consensus 68 ----d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h 142 (281)
++.|..+|...+.. .. +...-...+.++++|+++.+ ++-+..+.|..+++........+. +.. .
T Consensus 160 ~~~~~g~v~~~d~~~~~~-~~---~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~---~~~-~--- 228 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKET-TL---LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV---LVK-I--- 228 (322)
T ss_dssp HTCCCEEEEEEETTTTEE-EE---EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE---EEE-C---
T ss_pred ccCCCceEEEEeCCCCEE-EE---eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce---EEe-C---
Confidence 25566666533321 11 11112235678999999854 555667899998876432111111 111 1
Q ss_pred cccEEEEEEccCCCEEEEeeC----------CCcEEEEeCC
Q 023500 143 SSTIWALSFNAKGDKLVSCSD----------DLTIKIWGAD 173 (281)
Q Consensus 143 ~~~v~~~~~~~~~~~l~s~~~----------d~~i~~w~~~ 173 (281)
.. +..+++.+++.+.++... .+.|..+|.+
T Consensus 229 ~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 229 PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 12 567899999986666543 3556677654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.003 Score=49.18 Aligned_cols=198 Identities=9% Similarity=0.066 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCEEEEeeC--CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCee
Q 023500 6 VRSCAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~--d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~ 82 (281)
...++|+|++.++++.+. ++.|.+.|..+++......+..+. ....+++. +..| ++.-.++.+.++|....+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v- 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN- 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE-
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE-
Confidence 467899999877766553 578999999888653322232221 22244444 4444 5556788999999865543
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc-ccEEEEEEccCCCEEEEe
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSC 161 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~ 161 (281)
+..+..... ....++|++..++.+..+++|.++|.+... .+..+.....+.+ ..++.+.|. ++...+..
T Consensus 99 --~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~-----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 99 --IKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFK-----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp --EEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred --EEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCc-----EEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 223321111 123355677777766678899998775532 2333332111111 236678887 67666666
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecc----------cCcceEEEEeCCCc--eeeecCCCCcEEEEecc
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGY----------HDRTIFSVHWSREG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~ 226 (281)
..++.|.+.|.+..+.... ..+.+. .......+++++++ +++++.....+...+..
T Consensus 169 ~~~~~V~vID~~tg~V~~~---------I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGW---------ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TTSSEEEEEETTTCCEEEE---------EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEE---------EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 6678999999875432110 000000 01244678888764 67777777777666543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00036 Score=57.24 Aligned_cols=67 Identities=18% Similarity=-0.031 Sum_probs=48.0
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEecC--C
Q 023500 8 SCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCGR--D 68 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d 68 (281)
.++++|||+++..+. .++.|.+||..+.+. +.++.-. ...-..++|+|||++++.+.. +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 589999999877775 368899999987754 4444322 022357899999999887753 4
Q ss_pred CcEEE--EEe
Q 023500 69 KSVWI--WEV 76 (281)
Q Consensus 69 ~~v~~--w~~ 76 (281)
..+.+ +|.
T Consensus 147 ~~v~V~~iD~ 156 (368)
T 1mda_H 147 AAAGLSVPGA 156 (368)
T ss_dssp CEEEEEETTT
T ss_pred CeEEEEEEch
Confidence 56777 765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0024 Score=56.71 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=74.9
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------cEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEecC-CCcEEE
Q 023500 8 SCAWSP-SGKLLATASFDA-----------TTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGR-DKSVWI 73 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~-----------~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~-d~~v~~ 73 (281)
.+++.| ++++++.|+.+. .+.+||..++++..+..+.. +.....++++.++++.++.||. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456777 899999988653 57889998887765554432 2333345778899999999984 558999
Q ss_pred EEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe-cC-----CeEEEEeCCC
Q 023500 74 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YD-----NTIKVWWAED 123 (281)
Q Consensus 74 w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d-----~~v~~w~~~~ 123 (281)
||.... .+..+..+... ..-.++...+++++++.|+ .+ ..+.+||...
T Consensus 270 yd~~t~-~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 270 YDSSSD-SWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEGGGT-EEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ecCcCC-ceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 998643 33332222211 1113445667888888888 44 4688888754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0012 Score=58.90 Aligned_cols=162 Identities=10% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC---CCCEEEEec-----CCCcEEEEEecCCCeeEEeE
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA---SGTLLATCG-----RDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~-----~d~~v~~w~~~~~~~~~~~~ 86 (281)
+..++.++.|+.|..+|..+++.........+......+..+| ++..++..+ .++.|..||..+++......
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 4567788899999999998887543332210111111111122 444444332 37899999998876533322
Q ss_pred eecC----------------------------CccceeEEEecCCCCeEEEEecCCe-------------------EEEE
Q 023500 87 VLQG----------------------------HAQDVKMVQWHPTMDVLFSCSYDNT-------------------IKVW 119 (281)
Q Consensus 87 ~~~~----------------------------~~~~v~~v~~~p~~~~l~s~s~d~~-------------------v~~w 119 (281)
...+ +...-..+.+.|+..+++.++.++. |..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1110 0011125678888888888887764 8888
Q ss_pred eCCCCCCCCceeeeeeeec-cCCccccEEEEEEccCCC---EEEEeeCCCcEEEEeCCcccc
Q 023500 120 WAEDTDSDNWHCVQTISES-NNGHSSTIWALSFNAKGD---KLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~---~l~s~~~d~~i~~w~~~~~~~ 177 (281)
|.++... .|+........ .......+.......+++ .++.++.+|.+.++|.+.++.
T Consensus 281 D~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 281 NADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp ETTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred EccCCce-eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 8776431 12111000000 000112222223333554 788899999999999876654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0063 Score=51.06 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=88.0
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CC---cEEEEEecCCC
Q 023500 6 VRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK---SVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~---~v~~w~~~~~~ 80 (281)
...++++| ++..|..+...+.|..+|..++... .+......-..++|+++|++|+.+.. ++ ...+|-...+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 46789998 3444434444477888887765433 22223345678999999995555443 22 12233222222
Q ss_pred eeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE-
Q 023500 81 EFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL- 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l- 158 (281)
. .....+. .......++++| ++.++++-..++.|..++.+... ...+... +.......++|+|++++|
T Consensus 216 ~-~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~------~~~~~~~--~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 216 F-KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE------TTPLFTI--QDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp S-CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE------EEEEEEC--SSSSCCEEEEECTTSSEEE
T ss_pred e-eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc------EEEEEEc--CCCCcceeEEEcCCCCEEE
Confidence 1 1011111 122356788999 66777776677889888765431 1111111 111346789999999944
Q ss_pred EEeeCCCcEEEEeCC
Q 023500 159 VSCSDDLTIKIWGAD 173 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~ 173 (281)
++-...+.|..++.+
T Consensus 286 v~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 286 IVVVNQHYILRSDYD 300 (430)
T ss_dssp EEETTTTEEEEEEEE
T ss_pred EEECCCCEEEEEeCC
Confidence 444567788887654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0026 Score=56.65 Aligned_cols=74 Identities=7% Similarity=0.105 Sum_probs=50.7
Q ss_pred EEEEcCCCCEEEEeeCCC-------------------cEEEEecCCCceeeeeeecCCC-------CCeeEEEEcCCC--
Q 023500 8 SCAWSPSGKLLATASFDA-------------------TTCIWEDVGGDYECVATLEGHE-------NEVKSVSWNASG-- 59 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~-------------------~i~lw~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~-- 59 (281)
.++++|++.++..+..++ .|..+|..+++.........|. .....+....+|
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP 326 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence 567899888877776553 4888898888755444443342 112233444477
Q ss_pred -CEEEEecCCCcEEEEEecCCCe
Q 023500 60 -TLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 60 -~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..++.++.+|.+.++|..+++.
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~ 349 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKF 349 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCE
T ss_pred eeEEEEECCCCEEEEEECCCCCE
Confidence 6789999999999999887764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0056 Score=54.67 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=46.1
Q ss_pred EEEEcCCCCEEEEecCCCc-------------------EEEEEecCCCeeEEeEeecCCc-------cceeEEEecCCCC
Q 023500 52 SVSWNASGTLLATCGRDKS-------------------VWIWEVMPGNEFECVSVLQGHA-------QDVKMVQWHPTMD 105 (281)
Q Consensus 52 ~v~~~~~~~~l~s~~~d~~-------------------v~~w~~~~~~~~~~~~~~~~~~-------~~v~~v~~~p~~~ 105 (281)
.++++|+..+++.+..++. |..+|..+++...... ...|. ..........++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCCc
Confidence 5788898888888877653 9999998776433221 11121 1111222222443
Q ss_pred ---eEEEEecCCeEEEEeCCCCC
Q 023500 106 ---VLFSCSYDNTIKVWWAEDTD 125 (281)
Q Consensus 106 ---~l~s~s~d~~v~~w~~~~~~ 125 (281)
.++.++.+|.++++|.++..
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEEEEEECCCCeEEEEECCCCC
Confidence 68889999999999876653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.004 Score=48.12 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=100.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
+.+..++|+|++. +++....++.|...|.. ++......+.+. .....|++.+++.++++.-.++.+.++++......
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 4588999999765 55667777788777776 443222223332 45678888888887777666788888888655431
Q ss_pred EEeEee------cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC-CCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 83 ECVSVL------QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-DNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 83 ~~~~~~------~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
..+... .........++|.|.++.|+++.+.....+|.+..... ...............+...+.+++++|..
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 111111 12344568999999998887777776666665542100 00010000000001123346789999865
Q ss_pred C-EEEEeeCCCcEEEEeCC
Q 023500 156 D-KLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 156 ~-~l~s~~~d~~i~~w~~~ 173 (281)
. +++....+..+..+|.+
T Consensus 185 g~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp TEEEEEETTTTEEEEECTT
T ss_pred CeEEEEECCCCeEEEEcCC
Confidence 4 45555566677788765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0019 Score=58.34 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=66.5
Q ss_pred CeeEEEEc-CCCCEEEEec-C----CCcEEEEEecCC-CeeEEeEeecCCccceeEEEecCCCCeEEEEecCC-----eE
Q 023500 49 EVKSVSWN-ASGTLLATCG-R----DKSVWIWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TI 116 (281)
Q Consensus 49 ~v~~v~~~-~~~~~l~s~~-~----d~~v~~w~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-----~v 116 (281)
.+...+|| |||++|+-+. . ..+|+++|+..+ .... ..+ ......+.|+|+++.|+..+.|. .|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57788999 9999877332 2 235999998766 4110 011 11235788999998877666652 56
Q ss_pred EEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC---CCcEEEEeCC
Q 023500 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIWGAD 173 (281)
Q Consensus 117 ~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~~w~~~ 173 (281)
+++++....... ..+ ... ........+.|+||+++|+.... ...|.++|.+
T Consensus 250 ~~~~lgt~~~~~-~lv--~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 250 WRHVMGKLQSED-VCL--YEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEETTSCGGGC-EEE--EEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred EEEECCCCchhc-EEE--Eec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 667665432111 111 111 11233457899999998776542 2345556654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0067 Score=48.23 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=121.2
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~ 82 (281)
....++|+++|+++++-...+.|..||..+. ...... -.+....+++.++|+++++..... .|..++...+..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe---CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 3567899999998888767888999987653 222222 234678999999999766654433 355555444332
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCCCEEEE-
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKGDKLVS- 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s- 160 (281)
..+.... .......+...+.+..+++-+.++.|..++........+.....+.. .....-...+.+ +++++.|+.
T Consensus 108 ~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 108 ETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE
T ss_pred EEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE
Confidence 2222221 11122344444555556665567888877654321000000000000 000111234455 788765544
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
-...+.|..|+.+.... ....+ .+.. ......++++++|. +++...++.+..++... .. ..
T Consensus 185 d~~~~~I~~~~~~~~g~-----~~~~~---~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G------~~--~~ 246 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDK-----PGEPE---IFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR------ST--TI 246 (306)
T ss_dssp ETTTTEEEEEEBCTTSC-----BCCCE---EEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC------CE--EE
T ss_pred eCCCCEEEEEEeCCCCC-----CCccE---EEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC------CE--EE
Confidence 45567898888753100 00001 1110 01233455666664 44444456777775421 11 11
Q ss_pred eeeccCCCCCeeEEEEc---CCCCeeEEEeCC
Q 023500 240 LKKEKAHDMDVNSVQWS---PGERRLLASASD 268 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~---~~~~~~~~s~~~ 268 (281)
...........++++|. |++..++++.+.
T Consensus 247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 11111223458899998 777777776553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0063 Score=47.25 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=110.2
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCeeE
Q 023500 6 VRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 6 i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
+..++|+|+++ ++++-...+.|..++..+.... ..+...-.....++++|++.. .++-...+.|.++++..... .
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~ 114 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R 114 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E
Confidence 45788999655 5555556778999987655322 122222245688999997554 55556678898888753221 1
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEec---CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY---DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.+ ..........++++|++..++.+.. .+.|..++++... ...+.. ........+++++++..|+.
T Consensus 115 ~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~------~~~~~~---~~~~~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 115 VL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------RRILAQ---DNLGLPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------CEEEEC---TTCSCEEEEEEETTTTEEEE
T ss_pred EE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC------cEEEEE---CCCCCCcEEEEcCCCCEEEE
Confidence 11 1112234678999996555444443 3678777664321 111111 11234678999998765544
Q ss_pred -eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecc
Q 023500 161 -CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 226 (281)
Q Consensus 161 -~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~ 226 (281)
-...+.|..++.+..... ..... ......++...+.++++...++.+..++..
T Consensus 184 ~d~~~~~I~~~~~~g~~~~-----------~~~~~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 184 VDAGTHRAECLNPAQPGRR-----------KVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EETTTTEEEEEETTEEEEE-----------EEEEC--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EECCCCEEEEEecCCCceE-----------EEecC--CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence 445678999887632110 01111 122345555555566666666777777553
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.7e-06 Score=71.41 Aligned_cols=148 Identities=9% Similarity=0.054 Sum_probs=68.0
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC-CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN-EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
..+..+++++++++.|+.|..||..+++.. ..+..+.. .+.+......+..+++++.|+.+..||..+++.. ..
T Consensus 43 ~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~--w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~---w~ 117 (369)
T 2hz6_A 43 VPTHVEEPAFLPDPNDGSLYTLGSKNNEGL--TKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ---QT 117 (369)
T ss_dssp CC-----CCEEECTTTCCEEEC-----CCS--EECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------
T ss_pred cceEcCCCEEEEeCCCCEEEEEECCCCcee--eeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE---EE
Confidence 344557778888889999999998666432 12221211 1110000013456788888999999998776532 22
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC---CEEEEeeCC
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---DKLVSCSDD 164 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d 164 (281)
+..+. ...++|++..+++++.|+.|+.||..+... .|+.. .. ......+.++. ..++.++.|
T Consensus 118 ~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~--~~--------~~~~~~~~~~~~~~~~v~~~~~d 182 (369)
T 2hz6_A 118 LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-RWNAT--YF--------DYAASLPEDDVDYKMSHFVSNGD 182 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSSSC-CCEEE--EE--------EECCBCCCCCTTCCCCEEEEETS
T ss_pred ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE-EEeEe--cc--------cccCccccCCccccceEEEECCC
Confidence 22222 234567888899999999999998765431 12111 10 01111222221 457778889
Q ss_pred CcEEEEeCCccc
Q 023500 165 LTIKIWGADITR 176 (281)
Q Consensus 165 ~~i~~w~~~~~~ 176 (281)
|.+..||.+.++
T Consensus 183 g~v~a~d~~tG~ 194 (369)
T 2hz6_A 183 GLVVTVDSESGD 194 (369)
T ss_dssp CEEEEECTTTCC
T ss_pred CEEEEEECCCCc
Confidence 999999876543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0092 Score=48.01 Aligned_cols=234 Identities=11% Similarity=0.159 Sum_probs=116.8
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCe
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~ 81 (281)
..+.++.|.+.+..++. +..+.|.........+..+.. .......+.+|.|.| +. +..++.++.| +.... ++.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i--~~S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIM--LHTTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEE--EEESSTTSS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeE--EEECCCCCC
Confidence 45788999888888875 456655333222233333321 112345788999986 33 4444555643 33333 444
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
++.+.....+...+..+.+.+++..++.+ .++.|..- .+ .-..|..+.. +....+..+.+.+++.+++.+
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S--~D-gG~tW~~~~~------~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT--KD-SGKNWQALVQ------EAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE--SS-TTSSEEEEEC------SCCCCEEEEEECTTSCEEEEE
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE--cC-CCCCCEEeec------CCCcceEEEEEcCCCcEEEEE
Confidence 44332221223346667766666555544 56654321 11 1123433321 234567889999988877766
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (281)
...+.++-.|-. -..|+... ......+..+.+.+++.+.+.+.++.+.+...... ..... ..
T Consensus 181 ~~G~~~~S~d~g---------G~tW~~~~---~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G-----~tW~~-~~ 242 (327)
T 2xbg_A 181 SRGSFYSTWEPG---------QTAWEPHN---RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS-----ENWGE-LL 242 (327)
T ss_dssp TTSSEEEEECTT---------CSSCEEEE---CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE-----EEECC-CB
T ss_pred CCCcEEEEeCCC---------CCceeECC---CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC-----CeeEe-cc
Confidence 544433333321 12233321 11234566677777776666666676555421100 00000 11
Q ss_pred ec-cCCCCCeeEEEEcCCCCeeEEEeCCCCeE
Q 023500 242 KE-KAHDMDVNSVQWSPGERRLLASASDDGMI 272 (281)
Q Consensus 242 ~~-~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v 272 (281)
.. ..+...+.++.+.+++ .+++.+. +|.|
T Consensus 243 ~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i 272 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL 272 (327)
T ss_dssp CTTSSCCSCEEEEEESSSS-CEEEEES-TTCE
T ss_pred CCcccCCcceEEEEecCCC-EEEEEeC-CCeE
Confidence 01 1123457888888765 3555544 5655
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0046 Score=49.34 Aligned_cols=184 Identities=12% Similarity=0.018 Sum_probs=104.6
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
+..+...++|.++ .|+.++.+..+|.. ++. ...+......+.++.+.+++...+.. +.+..+| ..+.. .
T Consensus 139 ~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~---~ 207 (330)
T 3hxj_A 139 YATPIVSEDGTIY-VGSNDNYLYAINPD-GTE--KWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE---K 207 (330)
T ss_dssp CSCCEECTTSCEE-EECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE---E
T ss_pred eeeeEEcCCCEEE-EEcCCCEEEEECCC-CCE--eEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE---E
Confidence 4455667777755 46778889999877 443 22333344566777777777766554 7788888 44432 2
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.........+.++...+++. +..++.++.+..++.... .+..... ....+..+.+.+++ .|..++.+|
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~------~~~~~~~----~~~~~~~~~~~~~g-~l~v~t~~g 275 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGT------EKWRFKT----GKRIESSPVIGNTD-TIYFGSYDG 275 (330)
T ss_dssp EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSC------EEEEEEC----SSCCCSCCEECTTS-CEEEECTTC
T ss_pred EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCC------EeEEeeC----CCCccccceEcCCC-eEEEecCCC
Confidence 22333345577777877765 445566788877753211 1111111 11112234444455 566777887
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
.+..+|.+ ++. ..... .....+.++..++++.+..++.+|.+.+...
T Consensus 276 gl~~~d~~-g~~-----------~~~~~-~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 276 HLYAINPD-GTE-----------KWNFE-TGSWIIATPVIDENGTIYFGTRNGKFYALFN 322 (330)
T ss_dssp EEEEECTT-SCE-----------EEEEE-CSSCCCSCCEECTTCCEEEECTTSCEEEEEC
T ss_pred CEEEECCC-CcE-----------EEEEE-cCCccccceEEcCCCEEEEEcCCCeEEEEec
Confidence 88888753 211 00111 1123344455567777888888888877733
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.015 Score=46.58 Aligned_cols=161 Identities=9% Similarity=0.149 Sum_probs=99.6
Q ss_pred eEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecC----CCC--CeeEEEE---cCCCCEEEEec----------
Q 023500 7 RSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEG----HEN--EVKSVSW---NASGTLLATCG---------- 66 (281)
Q Consensus 7 ~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~----h~~--~v~~v~~---~~~~~~l~s~~---------- 66 (281)
-+++|++.+. ++++.-..+.|..|+..++..+.+ .+.+ .+. .+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 3678988555 454444789999999875544333 3332 111 3578999 68877776433
Q ss_pred ---CCCcEEEEEec---CCCeeEEeEeecCC-----------ccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCC
Q 023500 67 ---RDKSVWIWEVM---PGNEFECVSVLQGH-----------AQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDN 128 (281)
Q Consensus 67 ---~d~~v~~w~~~---~~~~~~~~~~~~~~-----------~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~ 128 (281)
.+..|..+|+. .++.... ..+... ....+.+...++++.+++++.- +.|...+........
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWS-VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEE-EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEE-ecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEee
Confidence 25778889987 4443221 122211 1247889999999999999988 876655443221110
Q ss_pred ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 129 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
+ .+...........+.++++|++..|+.....+.+.-+|++
T Consensus 174 ~----~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 174 F----AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp E----EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred e----eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 1111111122335689999999988887779999999876
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.048 Score=49.48 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=112.1
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec--CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE--GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
..|.++...++|++|-.|..++.|.+|+..++.+....... .....|.++...++|.+.+... + -+..|+.... .
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~-~ 482 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQR-S 482 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTT-E
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCC-e
Confidence 56888999889984456777777999998776543322100 1345789999888888655544 3 4777886433 2
Q ss_pred eEEeEee----cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee---eccCCccccEEEEEEccC
Q 023500 82 FECVSVL----QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 82 ~~~~~~~----~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~ 154 (281)
....... .-....|.++...+++.+.+.+. +-+..|+..... . .+. .........|.++...++
T Consensus 483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~-----~--~~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD-----I--QKASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE-----E--EECCCSCSCGGGGSCEEEEEECTT
T ss_pred EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe-----E--EEecCCCCCCCCCCeeEEEEECCC
Confidence 2111111 01235688888888887666544 456667654321 1 111 000112356888988888
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 155 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
+...++. ..| +..||.+..... ......+.....+.++..+++|.+-.++.+| +..++.
T Consensus 554 g~lWigT-~~G-l~~~d~~~~~~~---------~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~G-l~~~~~ 612 (795)
T 4a2l_A 554 GIIWVGT-REG-FYCFNEKDKQIK---------RYNTTNGLPNNVVYGILEDSFGRLWLSTNRG-ISCFNP 612 (795)
T ss_dssp SCEEEEE-SSC-EEEEETTTTEEE---------EECGGGTCSCSCEEEEEECTTSCEEEEETTE-EEEEET
T ss_pred CCEEEEe-CCC-ceeECCCCCcEE---------EeCCCCCCchhheEEEEECCCCCEEEEcCCc-eEEEcC
Confidence 8765544 345 777776532211 0000011223457778778777665555544 444544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.025 Score=45.49 Aligned_cols=238 Identities=8% Similarity=0.115 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC-CCeeE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFE 83 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~-~~~~~ 83 (281)
.+..+.|++ ++.++. +.++.|..-+.....+..+.....+.+.+..+.+.+++..++.+. ++.| |.... +..++
T Consensus 81 ~~~~i~~~~-~~~~~~-g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~ 155 (327)
T 2xbg_A 81 RFNSVSFQG-NEGWIV-GEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQ 155 (327)
T ss_dssp EEEEEEEET-TEEEEE-EETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEE
T ss_pred cEEEEEecC-CeEEEE-ECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCE
Confidence 577888886 555554 456655443222333433332223445678888877776666554 5543 33333 44554
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
.+. ......+..+.+.|++.+++.+ .++.+..-+ +..-..|+.+. ......+..+.+.+++..++ .+.
T Consensus 156 ~~~--~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~--d~gG~tW~~~~------~~~~~~~~~~~~~~~g~~~~-~~~ 223 (327)
T 2xbg_A 156 ALV--QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTW--EPGQTAWEPHN------RTTSRRLHNMGFTPDGRLWM-IVN 223 (327)
T ss_dssp EEE--CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEE--CTTCSSCEEEE------CCSSSCEEEEEECTTSCEEE-EET
T ss_pred Eee--cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEe--CCCCCceeECC------CCCCCccceeEECCCCCEEE-EeC
Confidence 432 2344568889999987776655 455543321 11112343321 12345678888988886554 456
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
+|.+.....+.++ .|.....-.......+..+.+.+++.+++++.++.+..- ... +.... .....
T Consensus 224 ~G~~~~s~~D~G~--------tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S-~Dg-----G~tW~-~~~~~ 288 (327)
T 2xbg_A 224 GGKIAFSDPDNSE--------NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCS-QDG-----GQTWQ-QDVDV 288 (327)
T ss_dssp TTEEEEEETTEEE--------EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEE-SST-----TSSCE-ECGGG
T ss_pred CceEEEecCCCCC--------eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEe-CCC-----CcccE-EcCcc
Confidence 7777665322111 111110000001123567777766655555556655322 111 11111 11111
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
......+.++.|.+++ . ++.++.+|.|.-++
T Consensus 289 ~~~~~~~~~v~~~~~~-~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPD-Q-GFILGQKGILLRYV 319 (327)
T ss_dssp TTSSSCCCEEEEEETT-E-EEEECSTTEEEEEC
T ss_pred CCCCCCeEEEEEECCC-c-eEEEcCCceEEEEc
Confidence 1223457888887544 3 44566789876654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.067 Score=48.43 Aligned_cols=200 Identities=9% Similarity=0.060 Sum_probs=110.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..|.++...++|.+.+ |..++.+..++..++.+............|.++...++|.+.+... +-+..++.....- .
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~-~ 482 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKV-I 482 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSC-C
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeE-E
Confidence 5688888888888765 6666678888876665432211012346788988888777655443 4477787654321 1
Q ss_pred EeEeec---CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 84 CVSVLQ---GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 84 ~~~~~~---~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
...... .....|.++...+++.+.+....+| +..++..... ...+.....-....|.++...+++...++
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQL------VRKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCE------EEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred ecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCe------EEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 111111 0134688888888877655543344 5556543321 11121111112356888888888875554
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEec
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
+.+|.+..||.+..... ......+.....+.++..+++|.+-.++.+| +..++.
T Consensus 556 -T~~Glv~~~d~~~~~~~---------~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~ 609 (781)
T 3v9f_A 556 -TGEGLVCFPSARNFDYQ---------VFQRKEGLPNTHIRAISEDKNGNIWASTNTG-ISCYIT 609 (781)
T ss_dssp -ETTEEEEESCTTTCCCE---------EECGGGTCSCCCCCEEEECSSSCEEEECSSC-EEEEET
T ss_pred -ECCCceEEECCCCCcEE---------EccccCCCCCceEEEEEECCCCCEEEEcCCc-eEEEEC
Confidence 44665477776432211 0000111223456677777777766666666 444433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.027 Score=43.63 Aligned_cols=226 Identities=11% Similarity=0.001 Sum_probs=122.1
Q ss_pred CEEEEeeCCCcEEEEecCCCceee---eeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCeeEEeEeecCC
Q 023500 16 KLLATASFDATTCIWEDVGGDYEC---VATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQGH 91 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~ 91 (281)
++|..+.. +.|..++..+..... ...+.........++|+|++.. +++-..++.|..+++..... .......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~ 77 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQD 77 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECC
Confidence 34444443 467777765543210 0111112245678999996554 55656678999998754322 1122222
Q ss_pred ccceeEEEecCCCC-eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC---CCcE
Q 023500 92 AQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTI 167 (281)
Q Consensus 92 ~~~v~~v~~~p~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i 167 (281)
......+++.|++. ++++-...+.|.+++.+.... ..+.. .+ ...+..++++|++..|+.+.. .+.|
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~--~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFD--TG-LVNPRGIVTDPVRGNLYWTDWNRDNPKI 148 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEEC--SS-CSSEEEEEEETTTTEEEEEECCSSSCEE
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------EEEEE--CC-CCCccEEEEeeCCCEEEEEECCCCCcEE
Confidence 24568899999755 555656677898887753211 11111 01 134678999997665555443 3577
Q ss_pred EEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCC-c-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-G-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 168 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
..++.+.... +.+ ....-.....++++++ + ++++-...+.+..++..... ...... .
T Consensus 149 ~~~~~dg~~~---------~~~---~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~------~~~~~~---~ 207 (267)
T 1npe_A 149 ETSHMDGTNR---------RIL---AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG------RRKVLE---G 207 (267)
T ss_dssp EEEETTSCCC---------EEE---ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE------EEEEEE---C
T ss_pred EEEecCCCCc---------EEE---EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc------eEEEec---C
Confidence 7776543211 000 0011123456777764 3 45666666778877654211 111111 1
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
......++.. +..++++....+.|..++..
T Consensus 208 -~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 208 -LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp -CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred -CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 1224566654 45677777777889888865
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00073 Score=58.37 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=66.1
Q ss_pred CeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCe---------eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 49 EVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNE---------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~---------~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
.-.++.++|||++++ ++..+.+|.++|+..... ........ -...-.-++|+|++..+.+.--|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEE
Confidence 346889999999754 556789999999873310 00111111 1234578899999965667778999999
Q ss_pred EeCCCCC-----CCCceeeeeeeecc-CCccccEEEEEEccCCCEEEEee
Q 023500 119 WWAEDTD-----SDNWHCVQTISESN-NGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 119 w~~~~~~-----~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
|+++... ......+.++.... .+|......+.++|||++|++..
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 9876510 01112233332211 12221112234578999888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.056 Score=44.05 Aligned_cols=229 Identities=10% Similarity=0.065 Sum_probs=111.0
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCcc
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 93 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 93 (281)
++..+..++.++.|..+|..+++......+.+ ........ .+..++.++.++.|..+|..+++....... .....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCCce
Confidence 35566678889999999988776543333221 11111111 245777788889999999877754322111 10000
Q ss_pred ---ceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCcc--ccEEEEEEcc--CCCEEEEeeCCCc
Q 023500 94 ---DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS--STIWALSFNA--KGDKLVSCSDDLT 166 (281)
Q Consensus 94 ---~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~ 166 (281)
....... .+..++.++.++.+..++..+... .|+. ..... .+.. ..+..+.-.| .+..++.++.++.
T Consensus 177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~-~w~~--~~~~~-~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQM-IWQQ--RISQA-TGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCE-EEEE--ECCC------------CCCCCCEEETTEEEEECTTSC
T ss_pred eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcE-EEEE--ecccC-CCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 0011111 145677788899999998765421 1111 00000 0000 0000000011 2456777788889
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCC
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 246 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 246 (281)
+..+|.+.++.. |+.. ......+.. .++.+..+..++.+..++...+. .........
T Consensus 251 l~~~d~~tG~~~-------w~~~-------~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~--------~~w~~~~~~ 307 (376)
T 3q7m_A 251 LTALDLRSGQIM-------WKRE-------LGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV--------TLWTQSDLL 307 (376)
T ss_dssp EEEEETTTCCEE-------EEEC-------CCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC--------EEEEECTTT
T ss_pred EEEEECCCCcEE-------eecc-------CCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc--------EEEeecccC
Confidence 999987654322 1100 011112222 24555556667778877654321 111111111
Q ss_pred CCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 247 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...+...... +.. +..++.+|.|..+|..+
T Consensus 308 ~~~~~~~~~~--~~~-l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 308 HRLLTSPVLY--NGN-LVVGDSEGYLHWINVED 337 (376)
T ss_dssp TSCCCCCEEE--TTE-EEEECTTSEEEEEETTT
T ss_pred CCcccCCEEE--CCE-EEEEeCCCeEEEEECCC
Confidence 1112222222 233 44677788898888654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.12 Score=46.91 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=133.2
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec------CCCCCeeEEEEcCCCCEEEEecCCCcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~ 77 (281)
..|.++...++|.+.+ |..++-|..|+..++.+.....-. -....|.++...++|+.|..|..++-|..++..
T Consensus 357 ~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp SSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 4688999999888764 677777889987766553322110 123578899888888845555555668888875
Q ss_pred CCCeeEEeEeec--CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec---cCCccccEEEEEEc
Q 023500 78 PGNEFECVSVLQ--GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---NNGHSSTIWALSFN 152 (281)
Q Consensus 78 ~~~~~~~~~~~~--~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~ 152 (281)
.+.. ....... .....|.++...+++.+.+.+ . +-+.+|+..... + ..+... ..-....|.++...
T Consensus 436 ~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~---~---~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 436 SGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS---F---TTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp TCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE---E---EECCBCTTCCBCCCCCEEEEEEC
T ss_pred CCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe---E---EEccccccccccCCceEEEEEEC
Confidence 4431 1111000 123568888888877766554 3 457777654321 1 111110 01123568889888
Q ss_pred cCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcC
Q 023500 153 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
+++...+... .| +..|+.+......... . .........+.++..+++|.+-.++.+| +..|+....
T Consensus 507 ~~g~lWigt~-~G-l~~~~~~~~~~~~~~~-~------~~~~l~~~~i~~i~~d~~g~lWigT~~G-l~~~d~~~~---- 572 (795)
T 4a2l_A 507 SHKRLWIGGE-EG-LSVFKQEGLDIQKASI-L------PVSNVTKLFTNCIYEASNGIIWVGTREG-FYCFNEKDK---- 572 (795)
T ss_dssp TTCCEEEEES-SC-EEEEEEETTEEEECCC-S------CSCGGGGSCEEEEEECTTSCEEEEESSC-EEEEETTTT----
T ss_pred CCCCEEEEeC-Cc-eEEEeCCCCeEEEecC-C------CCCCCCCCeeEEEEECCCCCEEEEeCCC-ceeECCCCC----
Confidence 8887665444 55 7777754322100000 0 0011234567888888887665555554 555544321
Q ss_pred CccceeeeeeccC-CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 233 GPSYKMLLKKEKA-HDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 233 ~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.... +....+ ....|.++...++|. +.+++ .. -|..|+.
T Consensus 573 --~~~~-~~~~~gl~~~~i~~i~~d~~g~-lWi~t-~~-Gl~~~~~ 612 (795)
T 4a2l_A 573 --QIKR-YNTTNGLPNNVVYGILEDSFGR-LWLST-NR-GISCFNP 612 (795)
T ss_dssp --EEEE-ECGGGTCSCSCEEEEEECTTSC-EEEEE-TT-EEEEEET
T ss_pred --cEEE-eCCCCCCchhheEEEEECCCCC-EEEEc-CC-ceEEEcC
Confidence 1111 111111 134578888887764 44333 33 4455554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.07 Score=44.20 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=76.5
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCC---e-------eEEeEeec------CCccceeEEEecCCC---CeEEE
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGN---E-------FECVSVLQ------GHAQDVKMVQWHPTM---DVLFS 109 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~---~-------~~~~~~~~------~~~~~v~~v~~~p~~---~~l~s 109 (281)
.|..+..||+|++||..+. .+|.|-.+..+. . .++ +.+. .....|..+.|||-+ ..|++
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 6788999999999998865 688888886321 0 111 1111 124679999999964 47888
Q ss_pred EecCCeEEEEeCCCCCCCCceeeeeee--eccCCccccEEEEEEccCCCEEEEee--CCCcEEE
Q 023500 110 CSYDNTIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCS--DDLTIKI 169 (281)
Q Consensus 110 ~s~d~~v~~w~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~i~~ 169 (281)
-..|++|++|++......+. .+.+.. .........|.+++|.+++-.|...+ +.|.|.-
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 89999999999986432222 110000 01122336688999999876666644 7777653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.078 Score=46.99 Aligned_cols=114 Identities=8% Similarity=0.064 Sum_probs=69.1
Q ss_pred EEEEcC-CCCEEEEecCCC-----------cEEEEEecCCCeeEEeEee-cCCccceeEEEecCCCCeEEEEec-CCeEE
Q 023500 52 SVSWNA-SGTLLATCGRDK-----------SVWIWEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSY-DNTIK 117 (281)
Q Consensus 52 ~v~~~~-~~~~l~s~~~d~-----------~v~~w~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~ 117 (281)
.+++.| +++.++.||.+. .+.+||..... +..+... ..+.....++++.+++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 566777 888888887643 57788876543 2222222 223333445677889999999884 45889
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CC-----CcEEEEeCCc
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DD-----LTIKIWGADI 174 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d-----~~i~~w~~~~ 174 (281)
+||.... .|..+..+.. .+. -.++...++++.++.|+ .+ ..+.+||...
T Consensus 269 ~yd~~t~---~W~~~~~~~~----~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 269 LYDSSSD---SWIPGPDMQV----ARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEGGGT---EEEECCCCSS----CCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EecCcCC---ceeECCCCCc----ccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 9987643 3443332221 111 12445557888888888 34 4688888764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.12 Score=45.95 Aligned_cols=155 Identities=11% Similarity=0.115 Sum_probs=84.0
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcC--CCCEEEEecC------CCcEEEEEecCCCeeEEeE
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGR------DKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~------d~~v~~w~~~~~~~~~~~~ 86 (281)
+..++.++.|+.|..+|..+++............ ...+.-+| .+..++.+.. ++.|..+|..+++......
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 4566778889999999988886543333221110 01111112 1334444432 5889999988776533322
Q ss_pred eecCC----------------------------ccceeEEEecCCCCeEEEEecCCe-------------------EEEE
Q 023500 87 VLQGH----------------------------AQDVKMVQWHPTMDVLFSCSYDNT-------------------IKVW 119 (281)
Q Consensus 87 ~~~~~----------------------------~~~v~~v~~~p~~~~l~s~s~d~~-------------------v~~w 119 (281)
...+. ......+.+.|...+++.++.++. |..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 11110 011124677888888888777653 7777
Q ss_pred eCCCCCCCCceeeeeeeeccCCcc-------ccEEEEEEccCCC---EEEEeeCCCcEEEEeCCcccc
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHS-------STIWALSFNAKGD---KLVSCSDDLTIKIWGADITRM 177 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~---~l~s~~~d~~i~~w~~~~~~~ 177 (281)
|..+.. ..|+ .+. ..|. .++....+..+++ .++.++.+|.+.++|.+.++.
T Consensus 276 D~~tG~-~~W~----~~~--~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 276 RPDTGK-LAWH----YQV--TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp CTTTCC-EEEE----EES--STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cCCCCc-eeeE----eec--CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 665542 1121 110 0111 2222233334554 688899999999999876553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.069 Score=41.19 Aligned_cols=216 Identities=10% Similarity=0.137 Sum_probs=112.7
Q ss_pred eecCCCCCeeEEEEcCCCCEEEE-ecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEe
Q 023500 42 TLEGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120 (281)
Q Consensus 42 ~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~ 120 (281)
.+.+-.+.+..++|+|++..|++ ...++.|...|.. ++... ...+.+ ......+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~-~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR-TIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE-EEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE-EEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 45555578999999998765554 5567777777765 43221 122232 24577888888887766655667888887
Q ss_pred CCCCCCCCceeeeeeeec--cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEE--e-ecc
Q 023500 121 AEDTDSDNWHCVQTISES--NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT--I-SGY 195 (281)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~--~-~~~ 195 (281)
+..... ...+...... ....+...-.++|+|.+..|.++.......+|..+. ...... ...... + ...
T Consensus 98 v~~~~~--i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~~~---l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSE--VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSSNE---LHISKDKALQRQF 170 (255)
T ss_dssp ECTTCC--EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES--TTCSSC---CEEEECHHHHHTC
T ss_pred cCCCCe--eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc--cccCCc---eeeecchhhcccc
Confidence 754321 0111111111 112344567899999987666666554556664431 000000 000000 0 000
Q ss_pred cCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccC-C-----CCCeeEEEEcCCCCeeEEEeC
Q 023500 196 HDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA-H-----DMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 196 ~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~~~~~~~~~~~~~s~~ 267 (281)
.-..+..+.++|. .+++.....+.+..++.... + ...+.-..+ | -.....|+|.++|. ++++ +
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~------~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-s 241 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-V------IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-S 241 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-E------EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-E
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-E------EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-c
Confidence 1123345666653 35555556666666654431 1 111111111 0 12457899999874 6655 4
Q ss_pred CCCeEEEEE
Q 023500 268 DDGMIKIWE 276 (281)
Q Consensus 268 ~Dg~v~iw~ 276 (281)
+.+.+..+.
T Consensus 242 E~n~~y~f~ 250 (255)
T 3qqz_A 242 EPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEEE
Confidence 455555544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.11 Score=43.41 Aligned_cols=156 Identities=10% Similarity=0.088 Sum_probs=85.5
Q ss_pred eeEEEEcCC---CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCC
Q 023500 6 VRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGN 80 (281)
Q Consensus 6 i~~~~~~~~---~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~ 80 (281)
-..++|+|+ |.++++-.. +.|+.++..++... .+.+.......++|+++|+++++..... .-.+..+....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~---~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVD---IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEE---EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEE---EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 457899985 565554333 88988888666533 3333344578999999999555543221 11122221111
Q ss_pred eeEEeEeecCCccceeEEEecC-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.......+. .-.....++++| ++.++++-..++.|+.++..... ....+... +.......++|+|+++.|+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~-----~~~~~~~~--~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT-----LTEEEVMM--DTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC-----EEEEEEEC--SCCSSCEEEEECTTSSEEE
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe-----EEEEEecc--CCCCCcccEEEeCCCCEEE
Confidence 110001111 122346788899 66667676677888888665321 10111111 1112234699999998554
Q ss_pred E-eeCCCcEEEEeCC
Q 023500 160 S-CSDDLTIKIWGAD 173 (281)
Q Consensus 160 s-~~~d~~i~~w~~~ 173 (281)
. -...+.|..++.+
T Consensus 289 vad~~~~~I~~~~~d 303 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEETTTTEEEEEEBC
T ss_pred EEeCCCCEEEEEeCC
Confidence 4 4456788887654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.12 Score=43.53 Aligned_cols=108 Identities=7% Similarity=0.099 Sum_probs=61.9
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC------CCCCeeEEEEcCC---CCE-EEEecC-------
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG------HENEVKSVSWNAS---GTL-LATCGR------- 67 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~------h~~~v~~v~~~~~---~~~-l~s~~~------- 67 (281)
.-+.++|.|+|+++++-...+.|.+++..++....+..+.. ..+....|+|+|+ +.. .++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 35689999999988875544568888765444433433321 2456779999995 444 444332
Q ss_pred -----CCcEEEEEecCCC-e---eEEe-Eeec-CCccceeEEEecCCCCeEEEEec
Q 023500 68 -----DKSVWIWEVMPGN-E---FECV-SVLQ-GHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 68 -----d~~v~~w~~~~~~-~---~~~~-~~~~-~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
...|.-++..... . .+.+ ..+. ........+.|.|++.++++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1234444443221 1 1111 1121 11234688999999998777654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.084 Score=40.81 Aligned_cols=139 Identities=9% Similarity=-0.014 Sum_probs=79.4
Q ss_pred cCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecC
Q 023500 12 SPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 90 (281)
Q Consensus 12 ~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~ 90 (281)
.+++ ++.+....++.+.+||..+.+. +.++.- ...=+.++ +++..|+.+..++.|.++|....+....+.+...
T Consensus 102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~--~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 102 ASDGERLYQLTWTEGLLFTWSGMPPQR--ERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EECSSCEEEEESSSCEEEEEETTTTEE--EEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEeCCEEEEEEccCCEEEEEECCcCcE--EEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 3344 4455556678999999877653 445442 22223444 5677777766788999999776654433333221
Q ss_pred C--ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec---------cCCccccEEEEEEccCCC-EE
Q 023500 91 H--AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---------NNGHSSTIWALSFNAKGD-KL 158 (281)
Q Consensus 91 ~--~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~-~l 158 (281)
. -..++-+.|. ++.+++....++.|.+-|.++.. .+..+... ...-....+.++|+|+++ ++
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT-----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence 1 1134556665 56666666567888888776543 22222211 001123568999999765 45
Q ss_pred EEe
Q 023500 159 VSC 161 (281)
Q Consensus 159 ~s~ 161 (281)
+||
T Consensus 251 VTG 253 (268)
T 3nok_A 251 MTG 253 (268)
T ss_dssp EEE
T ss_pred EeC
Confidence 544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.22 Score=45.01 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=128.7
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee-------cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
..|.++...++|.+- .|..++-|..++.....+...... .-....|.++...++|.+.+. ..++-|..++.
T Consensus 313 ~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig-t~~~Gl~~~~~ 390 (781)
T 3v9f_A 313 ASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG-TDGGGINVFEN 390 (781)
T ss_dssp SCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE-EBSSCEEEEET
T ss_pred CeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEE-eCCCcEEEEEC
Confidence 568899999988865 466667788888766554322110 012356889988887765443 33344777775
Q ss_pred cCCCeeEEeE-eecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 77 MPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.... ..... ........|.++...+++.+.+ |+.++-+..++..... ...+... ......|.++...+++
T Consensus 391 ~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~------~~~~~~~-~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 391 GKRV-AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK------FQIIELE-KNELLDVRVFYEDKNK 461 (781)
T ss_dssp TEEE-EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCE------EEECCST-TTCCCCEEEEEECTTS
T ss_pred CCCe-EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCc------EEEeccC-CCCCCeEEEEEECCCC
Confidence 3211 11000 0011235678888777766554 5666677777554321 1111110 1123568888888777
Q ss_pred CEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEee--cccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCC
Q 023500 156 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 233 (281)
.+.+ |+..| +..|+.+..... ...... ......+.++..++++.+-.++.++-+..++....
T Consensus 462 ~lwi-gt~~G-l~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~----- 525 (781)
T 3v9f_A 462 KIWI-GTHAG-VFVIDLASKKVI---------HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ----- 525 (781)
T ss_dssp EEEE-EETTE-EEEEESSSSSCC---------EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC-----
T ss_pred CEEE-EECCc-eEEEeCCCCeEE---------ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC-----
Confidence 5444 45544 777876533211 000000 01135677888888887666665434555644321
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...............|.++...+++. +.++ +.+|.|..|+..
T Consensus 526 -~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~-T~~Glv~~~d~~ 567 (781)
T 3v9f_A 526 -LVRKFNQYEGFCSNTINQIYRSSKGQ-MWLA-TGEGLVCFPSAR 567 (781)
T ss_dssp -EEEEECTTTTCSCSCEEEEEECTTSC-EEEE-ETTEEEEESCTT
T ss_pred -eEEEccCCCCCCCCeeEEEEECCCCC-EEEE-ECCCceEEECCC
Confidence 11111101111234688888887765 4433 335654666643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.13 Score=41.88 Aligned_cols=149 Identities=9% Similarity=0.049 Sum_probs=80.7
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCC-------CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEe
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGH-------ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV 87 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~ 87 (281)
+..+..++.++.|..+|..+++......+... ...+.+ ....++..++.++.++.|..+|..+++......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~- 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK- 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe-
Confidence 45666778888999999887765433333211 122222 122246677888889999999987776432221
Q ss_pred ecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeee-ccCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 88 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 88 ~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
.. ......... .+..++.++.++.+..++..+... .|+....... .......+ .. .+..++.+..++.
T Consensus 131 ~~--~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~----~~--~~~~v~~g~~~g~ 199 (376)
T 3q7m_A 131 VA--GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSLRGESAP----TT--AFGAAVVGGDNGR 199 (376)
T ss_dssp CS--SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----CCCCCC----EE--ETTEEEECCTTTE
T ss_pred CC--CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceeecCCCCc----EE--ECCEEEEEcCCCE
Confidence 11 111111111 145777788899999998765421 1111000000 00000111 11 1346778888999
Q ss_pred EEEEeCCccc
Q 023500 167 IKIWGADITR 176 (281)
Q Consensus 167 i~~w~~~~~~ 176 (281)
+..+|.+.++
T Consensus 200 l~~~d~~tG~ 209 (376)
T 3q7m_A 200 VSAVLMEQGQ 209 (376)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999876443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.043 Score=45.45 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=74.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc---e-------eeeeeec--C----CCCCeeEEEEcCC---CCEEEEe
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGD---Y-------ECVATLE--G----HENEVKSVSWNAS---GTLLATC 65 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~---~-------~~~~~~~--~----h~~~v~~v~~~~~---~~~l~s~ 65 (281)
.|..+..+|+|++||..+ +..|.|-+...+. . ...+++. . ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999999875 5567776644211 0 0111221 1 2467999999995 4678888
Q ss_pred cCCCcEEEEEecCCCe-eEEe------EeecCCccceeEEEecCCCCeEEEEe--cCCeEEEE
Q 023500 66 GRDKSVWIWEVMPGNE-FECV------SVLQGHAQDVKMVQWHPTMDVLFSCS--YDNTIKVW 119 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~-~~~~------~~~~~~~~~v~~v~~~p~~~~l~s~s--~d~~v~~w 119 (281)
-.|+.|++||+..... .... .........|.+++|.+++-.|...+ ..|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 8999999999975321 1101 11122336788999999877666645 78888644
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.11 Score=43.50 Aligned_cols=158 Identities=13% Similarity=0.212 Sum_probs=88.3
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEecCCCce-eeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCC-Cee
Q 023500 7 RSCAWSP-SGKLLATASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPG-NEF 82 (281)
Q Consensus 7 ~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~-~~~ 82 (281)
..++++| +|.++++-..++.|..++..++.. ..+.... ....-..++|+|+|++ .++-...+.|+.++.... ...
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 4578899 777777666677888888765543 2222221 1222346999999984 555566788888876421 111
Q ss_pred EEeEeecC---------------CccceeEEEe---------cCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 83 ECVSVLQG---------------HAQDVKMVQW---------HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 83 ~~~~~~~~---------------~~~~v~~v~~---------~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
.....+.+ .-..-..+++ .++++++++-...+.|+.++.+. .+.++.-.
T Consensus 310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-------~v~t~~G~ 382 (433)
T 4hw6_A 310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-------RVTTYAGR 382 (433)
T ss_dssp CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-------EEEEEECC
T ss_pred CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-------CEEEEEeC
Confidence 00011111 0112346778 67777778877778888875321 11111100
Q ss_pred --------------cCCccccEEEEEEc-cCCCEEEEeeCCCcEEEEeC
Q 023500 139 --------------NNGHSSTIWALSFN-AKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 139 --------------~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~~w~~ 172 (281)
..+.-..+..++++ +++.++++-.....|+.++.
T Consensus 383 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 383 GNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 00112346789998 56655555555667776643
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.15 Score=41.37 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=60.4
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCC---CCEE-EEecCC-----CcEEE
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNAS---GTLL-ATCGRD-----KSVWI 73 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~---~~~l-~s~~~d-----~~v~~ 73 (281)
-+.++|.|+|+++++ ..++.|.+++ .++...+..+. .-......++|+|+ +..| ++-..+ ..|..
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 467899999997766 4568898887 33333333221 12346789999998 4444 443322 56666
Q ss_pred EEecCCC--eeEE-eEeec---CCccceeEEEecCCCCeEEEEe
Q 023500 74 WEVMPGN--EFEC-VSVLQ---GHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 74 w~~~~~~--~~~~-~~~~~---~~~~~v~~v~~~p~~~~l~s~s 111 (281)
++..... ..+. ...+. +.......+.|.|++.++++.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7765321 1111 11122 1112346899999998777754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.1 Score=42.41 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=59.6
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec---CCCCCeeEEEEcCC---CCE-EEEecC---C----Cc
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNAS---GTL-LATCGR---D----KS 70 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~---~~~-l~s~~~---d----~~ 70 (281)
.-+.++|.|+|+++++ ..++.|.+++. ++. ..+..+. .-......|+|+|+ +.. .++-.. + ..
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3467899999997766 45588888864 333 3333221 12345789999997 444 444332 3 45
Q ss_pred EEEEEecCCC-e---eEEe-Eeec-CCccceeEEEecCCCCeEEEEe
Q 023500 71 VWIWEVMPGN-E---FECV-SVLQ-GHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 71 v~~w~~~~~~-~---~~~~-~~~~-~~~~~v~~v~~~p~~~~l~s~s 111 (281)
|..++..... . .+.+ ..+. ........+.|.|++.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 6666654321 1 1111 1121 1112346799999998877754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.14 Score=40.39 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=86.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKLLATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
....++++++|+++++....+ .|..++..+++...+..+. .......++..+++..+++-..++.|..+|..... .
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~-~ 150 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-G 150 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE-E
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCc-E
Confidence 356789999999776654332 3555666666544333332 12223455555555556666567877777754221 1
Q ss_pred EEeE--------eecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCC-CCCCceeeeeeeeccCCccccEEEEEEc
Q 023500 83 ECVS--------VLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDT-DSDNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 83 ~~~~--------~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
.... .....-...+.+ +|++.. +++-+..+.|..+++... ..... ..+... .....++++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~---~~~~~~-----~~P~gi~vd 220 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIFVEQ-----TNIDDFAFD 220 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC---EEEEES-----CCCSSEEEB
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc---EEEecc-----CCCCCeEEC
Confidence 1100 000111223444 777764 556566789999987642 11111 111110 124458889
Q ss_pred cCCCEEEEeeCCCcEEEEeCC
Q 023500 153 AKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 153 ~~~~~l~s~~~d~~i~~w~~~ 173 (281)
+++.++++....+.|..++.+
T Consensus 221 ~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 221 VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCEEEEeCCCCeEEEECCC
Confidence 999887777777889998764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.12 Score=39.45 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=75.8
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCc---
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA--- 92 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~--- 92 (281)
++++....++.+.+||..+.+ .+.++.. ...=+.++ +++..|+.+..+++|.++|....+....+.+.. +.
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~--~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~ 149 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLT--PRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL 149 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTE--EEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC
T ss_pred EEEEEEeeCCEEEEEECCcCc--EEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc
Confidence 444555667889999987764 3445442 22223444 566666655568889999876655433333321 11
Q ss_pred cceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec-----c----CCccccEEEEEEccCCCEEEEee
Q 023500 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES-----N----NGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~-----~----~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
..++-+.|. ++.+++....+..|.+.|..+.. .+..+... . ..-....+.++++|+++.|+..+
T Consensus 150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-----V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 150 DNLNELEWV-NGELLANVWLTSRIARIDPASGK-----VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-----EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-----EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 233445554 55556565567788888776543 22222111 0 01123568999999776554443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.1 Score=46.38 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=49.7
Q ss_pred EEEEcCCCCEEEEeeCCC-------------------cEEEEecCCCceeeeeeecCCC-------CCeeEEEEcCCCC-
Q 023500 8 SCAWSPSGKLLATASFDA-------------------TTCIWEDVGGDYECVATLEGHE-------NEVKSVSWNASGT- 60 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~-------------------~i~lw~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~- 60 (281)
..+++|++.++..+..++ .|..+|..+++.........|. .+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 467888888877777665 3888898888755444433343 2222333334665
Q ss_pred --EEEEecCCCcEEEEEecCCCe
Q 023500 61 --LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 61 --~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.++.++.+|.+.++|..+++.
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCE
T ss_pred EEEEEEECCCCEEEEEECCCCCE
Confidence 688899999999999877654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.26 Score=39.82 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=63.5
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee----cCCCCCeeEEEEcCC----CCEEEEe--cCCCcEEEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL----EGHENEVKSVSWNAS----GTLLATC--GRDKSVWIW 74 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~--~~d~~v~~w 74 (281)
.-+.++|.|+|+++++--..|.|.+++..++....+..+ ....+....|+|+|+ +.+.++- ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 356889999999988766588899887655543333322 123456789999995 4444432 234444445
Q ss_pred EecCCC-------eeEEe-Eeec-CCccceeEEEecCCCCeEEEEe
Q 023500 75 EVMPGN-------EFECV-SVLQ-GHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 75 ~~~~~~-------~~~~~-~~~~-~~~~~v~~v~~~p~~~~l~s~s 111 (281)
.+.... ..+.+ ..+. ........+.|.|++.++++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 544311 11111 1121 1222456799999998888765
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.24 Score=40.16 Aligned_cols=107 Identities=9% Similarity=0.050 Sum_probs=57.5
Q ss_pred ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeee----cCCCCCeeEEEEcCC----CCEEEEecC-------C
Q 023500 5 TVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATL----EGHENEVKSVSWNAS----GTLLATCGR-------D 68 (281)
Q Consensus 5 ~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~~~-------d 68 (281)
.-+.++|.|+|+ ++++ ...+.|.+++..+.....+..+ ....+....++|+|+ +.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 346889999999 7755 5578888887532211111111 112345689999995 444444322 2
Q ss_pred CcEEEEEecCCC----eeEEe-Eeec---CCccceeEEEecCCCCeEEEEec
Q 023500 69 KSVWIWEVMPGN----EFECV-SVLQ---GHAQDVKMVQWHPTMDVLFSCSY 112 (281)
Q Consensus 69 ~~v~~w~~~~~~----~~~~~-~~~~---~~~~~v~~v~~~p~~~~l~s~s~ 112 (281)
..|..+++.... ..+.+ ..+. .....-..+.|.|++.++++.+.
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 245555554321 11111 1111 11122467999999977776543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.22 Score=37.35 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCcee----eeeee--cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE----CVATL--EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~----~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
.+..++|+|+|.+.+. .++.+.-.+..+.... .-..+ .+.+. ..++.|.|+|.+.++ .|+.|.-++-..
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5678999999998887 4555433333221100 00111 12222 478899999998888 458775454211
Q ss_pred CCe--e--EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 79 GNE--F--ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 79 ~~~--~--~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
... + ....+-.+-=..+..|.+.|++.+.+.. |+.++-+.........|....+. .....-.....+.|.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~--~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATK--IGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEE--EESSSGGGEEEEEECTT
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccce--eccCCcceEEEEEECCC
Confidence 110 0 0011112222567999999999888776 77764332222222222110001 00011223344668888
Q ss_pred CCEEEEeeCCC
Q 023500 155 GDKLVSCSDDL 165 (281)
Q Consensus 155 ~~~l~s~~~d~ 165 (281)
+...+.- ++
T Consensus 193 G~l~~v~--~g 201 (236)
T 1tl2_A 193 GTLFGVQ--GG 201 (236)
T ss_dssp SCEEEEE--TT
T ss_pred CcEEEEe--CC
Confidence 7655544 66
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.42 Score=39.90 Aligned_cols=71 Identities=8% Similarity=0.056 Sum_probs=48.9
Q ss_pred eeEEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEec
Q 023500 6 VRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVM 77 (281)
Q Consensus 6 i~~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~ 77 (281)
...++++| +|.++++-...+.|..++..+.....+...... ..-..++|+|+|++ +++-...+.|..++..
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 45678999 778777766778899998876543223332221 23468999999994 5566677888888865
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.57 Score=39.84 Aligned_cols=161 Identities=9% Similarity=0.065 Sum_probs=89.0
Q ss_pred eeEEEEcCC--CCEEEEeeCCCcEEEEecCCCceeeeeeecC-CCCCeeEEEE-------cCCCCEEEEecCCC-c----
Q 023500 6 VRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSW-------NASGTLLATCGRDK-S---- 70 (281)
Q Consensus 6 i~~~~~~~~--~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~-------~~~~~~l~s~~~d~-~---- 70 (281)
-..++|+|. ++++++-...+.|++.|..++....+..... .-.....++| +++|+.|+.+...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 457899983 4555555544678888877765433322211 1224688999 99998666554443 2
Q ss_pred --EEEEEecCCCee------EEeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCC-------CCCC-CC---ce
Q 023500 71 --VWIWEVMPGNEF------ECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAE-------DTDS-DN---WH 130 (281)
Q Consensus 71 --v~~w~~~~~~~~------~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~-------~~~~-~~---~~ 130 (281)
|.+.+-.....+ ..+..+ .....++.+|+ +.++++-..++.|..++++ .... .+ ..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 444442221121 112221 23567788995 5556677777889988875 2211 00 00
Q ss_pred --eeeeeeeccCCccccEEEEEEccCCCEEEEe-eCCCcEEEEeC
Q 023500 131 --CVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGA 172 (281)
Q Consensus 131 --~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~~w~~ 172 (281)
....+... +.......++|+|+++.|+.+ .....|+.++.
T Consensus 297 ~g~~~~l~~~--~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 297 PNTFKQLFTI--ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TTTEEEEEEC--SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccceeEec--CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 00111111 122345789999999954444 45667777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.19 Score=44.99 Aligned_cols=155 Identities=8% Similarity=0.002 Sum_probs=81.6
Q ss_pred eeEEEEcCCCCEE-EEeeCCCcEEEEecCC----CceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 023500 6 VRSCAWSPSGKLL-ATASFDATTCIWEDVG----GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 6 i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~ 79 (281)
+..++|++.+..| ++-...+.|..++..+ ... ...+...-.....|++.+. ++++++-...+.|.+.++...
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~--~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY--DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC--CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce--EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567888865544 4434456788877654 111 1111111123456788764 455566566788888886533
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEec-C-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-D-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
.. ...+.........+++.|.+..|+.+.. . +.|...++.... . ..+.. ..-.....|+|+|++..
T Consensus 486 ~~---~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~---~~l~~---~~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 486 KR---KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---I---YSLVT---ENIQWPNGITLDLLSGR 553 (699)
T ss_dssp CE---EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---C---CEESC---SSCSSCCCEEECTTTCC
T ss_pred ce---EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---e---eEEEe---CCCCCccEEEEeccCCE
Confidence 21 1112222234578889997655444332 2 566655443221 0 11110 01133567999987654
Q ss_pred E-EEeeCCCcEEEEeCCc
Q 023500 158 L-VSCSDDLTIKIWGADI 174 (281)
Q Consensus 158 l-~s~~~d~~i~~w~~~~ 174 (281)
| ++-...+.|..++.+.
T Consensus 554 LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 554 LYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EEEEETTTTEEEEECSSS
T ss_pred EEEEecCCCeEEEEccCC
Confidence 4 4444566888887753
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.26 Score=39.41 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=75.4
Q ss_pred eeEEEE---cCCCCEEEEee-------------CCCcEEEEecC---CCceeeeeeecCCC-----------CCeeEEEE
Q 023500 6 VRSCAW---SPSGKLLATAS-------------FDATTCIWEDV---GGDYECVATLEGHE-----------NEVKSVSW 55 (281)
Q Consensus 6 i~~~~~---~~~~~~l~tg~-------------~d~~i~lw~~~---~~~~~~~~~~~~h~-----------~~v~~v~~ 55 (281)
+..+.| .|+++++++.. .++.+..||.. +++......+.+.. .....++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 468889 68888887644 25778889987 55443333433211 24789999
Q ss_pred cCCCCEEEEecCC-CcEEEEEecCCCeeEEeEeec----CCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 56 NASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQ----GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 56 ~~~~~~l~s~~~d-~~v~~w~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
.++|+..++++.- +. ||.+...........+. ......+.+.++|++.+|+....++.+..+|+..
T Consensus 145 D~~GnaYVt~s~~~~~--I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPA--IARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCEEEEEEESSCE--EEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCCEEEeCCCCCCe--EEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 9999998888766 55 45554443211111111 1123367999999999887776699998888763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.68 E-value=0.74 Score=38.02 Aligned_cols=159 Identities=7% Similarity=-0.021 Sum_probs=89.4
Q ss_pred cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCCc--eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~ 79 (281)
..+..++|++.+. ++.+-...+.|..++..+.. ......+...-.....+++.+. +++.++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 3567889998554 55554556778777765421 0111122223345678899884 555566667788888876533
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEe-c-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-Y-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
.. ...+...-...+.+++.|.+..++.+. . .+.|...+++.... ..+.. ..-..++.|++++++..
T Consensus 192 ~~---~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~---~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 192 KR---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVT---ENIQWPNGITLDLLSGR 259 (400)
T ss_dssp SE---EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEEC---SSCSCEEEEEEETTTTE
T ss_pred ce---EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEE---CCCCceEEEEEEeCCCE
Confidence 21 111222233467899999766554443 2 36777666543221 11111 11245688999987776
Q ss_pred EEEee-CCCcEEEEeCCc
Q 023500 158 LVSCS-DDLTIKIWGADI 174 (281)
Q Consensus 158 l~s~~-~d~~i~~w~~~~ 174 (281)
|+.+. ....|..+|.+.
T Consensus 260 lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEETTTTEEEEEETTS
T ss_pred EEEEECCCCEEEEEeCCC
Confidence 66654 456788887753
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.66 Score=36.33 Aligned_cols=147 Identities=11% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCCEEEEeeCC----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----CcEEEEEecCCCeeEE
Q 023500 14 SGKLLATASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNEFEC 84 (281)
Q Consensus 14 ~~~~l~tg~~d----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~~~~ 84 (281)
++.+++.|+.+ ..+..||..+..+..+..+......-..+. -++..++.||.+ ..+.++|.... .+..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTT-EEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCC-ceee
Confidence 45677788754 357888988777655443332222212222 256677777754 35777776533 3333
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCC-----eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-----~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
+..+......-..+.+ ++.+++.|+.++ .+.++|+.. ..|..+..+......| .++. .++..++
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~----~~~~--~~~~iyv 160 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKS---NEWFHVAPMNTRRSSV----GVGV--VGGLLYA 160 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTT---TEEEEECCCSSCCBSC----EEEE--ETTEEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCC---CeEeecCCCCCcccCc----eEEE--ECCEEEE
Confidence 3222211111122222 456667776554 455665543 2354443332211122 1222 2455666
Q ss_pred EeeCC-------CcEEEEeCCc
Q 023500 160 SCSDD-------LTIKIWGADI 174 (281)
Q Consensus 160 s~~~d-------~~i~~w~~~~ 174 (281)
.|+.+ ..+..||...
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTT
T ss_pred EeCCCCCCCccccEEEEEeCCC
Confidence 66532 2466777653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.78 Score=37.03 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=89.7
Q ss_pred eeEEEEcCCCC-EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCC-CEEEEecCCCcEEEEEecCCCeeE
Q 023500 6 VRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 6 i~~~~~~~~~~-~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
...++|++... ++.+-...+.|..++..+.....+ +.........+++.+.+ .+.++-...+.|.+.++.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 150 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 150 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence 56788987544 555555667788887765543222 11122344688998854 4556666678888888753321
Q ss_pred EeEeecCCccceeEEEecCCCCe-EEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.......-...+.+++.|.+.. +++-... +.|...+++.... ..+.. ..-.....++++|++..|+..
T Consensus 151 -~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~---~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 151 -KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIAD---THLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp -EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCC---SSCSCEEEEEEETTTTEEEEE
T ss_pred -EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEE---CCCCCcceEEEeCCCCEEEEE
Confidence 1112222344688999996554 4554444 6777766543211 11110 112346789999876655554
Q ss_pred e-CCCcEEEEeCCc
Q 023500 162 S-DDLTIKIWGADI 174 (281)
Q Consensus 162 ~-~d~~i~~w~~~~ 174 (281)
. ..+.|..++.+.
T Consensus 221 D~~~~~I~~~~~dG 234 (349)
T 3v64_C 221 DAKHHVIERANLDG 234 (349)
T ss_dssp ETTTTEEEEEETTS
T ss_pred ECCCCEEEEEeCCC
Confidence 4 556788887653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.57 Score=35.18 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC--e--e-EEeEeec-CCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 48 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--E--F-ECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 48 ~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~--~--~-~~~~~~~-~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
..+..++|+|+|.+.+. .++. +|...... . + .....+. .--..-.++-|.|++.+.++ .|+.|+-++.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 37789999999987666 4554 56654321 0 0 0001110 00111378899999998888 5698876654
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
.+.....|.-..+. ....-=..+..|.|.|++.+.+.. |+.+.
T Consensus 115 P~~~~~~Wl~~a~~--vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATE--VGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEE--EECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CcCCCCceeccccE--eccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 33333333111000 000011356889999999765554 77643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.94 Score=37.15 Aligned_cols=194 Identities=10% Similarity=0.012 Sum_probs=103.9
Q ss_pred ceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
....++|++.+ .++.+-...+.|..++..+.....+ +.........+++.+.+. +.++-...+.|.+.++.....
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~- 193 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR- 193 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence 35678898754 4555555667788888766543222 121223346788888544 455666667777776642221
Q ss_pred EEeEeecCCccceeEEEecCCCCeE-EEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
...+...-.....+++.|.+..+ ++-... +.|...+.+... ...+.. ..-.....|+|+|++..|+.
T Consensus 194 --~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~---~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 194 --KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIAD---THLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp --EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEEC---SSCSCEEEEEEEGGGTEEEE
T ss_pred --EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEE---CCCCCeeeEEEeCCCCEEEE
Confidence 11122223446788999876654 444444 567766654321 111111 11234678999987665555
Q ss_pred e-eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEe
Q 023500 161 C-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV 224 (281)
Q Consensus 161 ~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~ 224 (281)
. ...+.|..++.+.... +.+ .. ........+....+.++.+-...+.+..++
T Consensus 263 aD~~~~~I~~~d~dG~~~---------~~~--~~-~~~~~P~giav~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHR---------KAV--IS-QGLPHPFAITVFEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EETTTTEEEEECTTSCSC---------EEE--EC-SSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEeCCCCee---------EEE--EE-CCCCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence 4 4556788887653211 000 00 011223445554555566655666666664
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.86 Score=35.65 Aligned_cols=147 Identities=17% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCCEEEEeeCCC-----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEecCCCeeE
Q 023500 14 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMPGNEFE 83 (281)
Q Consensus 14 ~~~~l~tg~~d~-----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~~~~~~ 83 (281)
++++++.|+.++ .+.+||..+.++..+..+........++.+ ++..++.||.++ .+.++|+... .+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-EWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-EEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-eEe
Confidence 667888888653 578889888777655544322222222222 566777777553 4556665432 333
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEecC-------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+..+........++.+ ++.+++.|+.+ ..+.++|+... .|..+..+......| .++.+ ++.
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~----~~~~~--~~~ 206 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN---EWTYIAEMSTRRSGA----GVGVL--NNL 206 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT---EEEEECCCSSCCBSC----EEEEE--TTE
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC---cEEECCCCccccccc----cEEEE--CCE
Confidence 33222211111112222 45566666543 34667766542 354443332211122 12222 456
Q ss_pred EEEEeeCCC-----cEEEEeCCc
Q 023500 157 KLVSCSDDL-----TIKIWGADI 174 (281)
Q Consensus 157 ~l~s~~~d~-----~i~~w~~~~ 174 (281)
.++.|+.++ .+.+||.+.
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTT
T ss_pred EEEECCCCCCcccceEEEEeCCC
Confidence 677776543 577777654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=1.5 Score=38.20 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=34.0
Q ss_pred cEEEEecCCCceeeeeeecCCC--------CCeeEEEEcCCCC---EEEEecCCCcEEEEEecCCCe
Q 023500 26 TTCIWEDVGGDYECVATLEGHE--------NEVKSVSWNASGT---LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~--------~~v~~v~~~~~~~---~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.|..+|..+++.........|. .++ -+...++|+ .++.++.++.+.+.|..+++.
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCE
Confidence 5888898887754444333332 222 122234674 567788899999999876654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=2.2 Score=38.71 Aligned_cols=158 Identities=6% Similarity=-0.021 Sum_probs=88.4
Q ss_pred ceeEEEEcCC-CCEEEEeeCCCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCC
Q 023500 5 TVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~ 80 (281)
.+..++|++. +.++.+-...+.|..++..+... .....+...-.....|++.+.++ +.++-...+.|.+.++....
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 4567888884 44555555566777777654210 11122222334567899988765 45566677888888875332
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEe-cC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s-~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. ...+...-.....|++.|....|+.+. .. +.|...+++... ...+.. ..-..+..|++++.+..|
T Consensus 505 ~---~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~---~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 505 R---KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVT---ENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp E---EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEEC---SSCSCEEEEEEETTTTEE
T ss_pred E---EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEe---CCCCCceEEEEecCCCeE
Confidence 1 111222334468899999765554443 33 567766654321 111111 112457889999776666
Q ss_pred EEee-CCCcEEEEeCCc
Q 023500 159 VSCS-DDLTIKIWGADI 174 (281)
Q Consensus 159 ~s~~-~d~~i~~w~~~~ 174 (281)
+... ....|..++++.
T Consensus 573 YwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEETTTTEEEEEETTS
T ss_pred EEEeCCCCcEEEEecCC
Confidence 6554 445777777653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=1.3 Score=35.19 Aligned_cols=156 Identities=7% Similarity=0.036 Sum_probs=88.9
Q ss_pred ceeEEEEcCCC-CEEEEeeCCCcEEEEecCC----CceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecC
Q 023500 5 TVRSCAWSPSG-KLLATASFDATTCIWEDVG----GDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 5 ~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~ 78 (281)
....++|++.+ .++.+-...+.|..++..+ .... ..+...-.....+++.+.+. ..++-...+.|.+.++..
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578899865 4555655667888888764 2111 11222223457889987544 455666778899888753
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecC--CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d--~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
... .. ...........+++.|.+..++.+... +.|...+++... ...+.. ..-.....+++++++.
T Consensus 109 ~~~-~~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~---~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 109 VKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVT---ENIQWPNGITLDLLSG 176 (316)
T ss_dssp SSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEEC---SSCSCEEEEEEETTTT
T ss_pred Cce-EE--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEE---CCCCCceEEEEeccCC
Confidence 221 11 122223356788999976655444433 577766654321 111111 1123567899998776
Q ss_pred EEEEee-CCCcEEEEeCCc
Q 023500 157 KLVSCS-DDLTIKIWGADI 174 (281)
Q Consensus 157 ~l~s~~-~d~~i~~w~~~~ 174 (281)
.|+.+. ..+.|..++.+.
T Consensus 177 ~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEEEETTTTEEEEEETTS
T ss_pred EEEEEECCCCeEEEEecCC
Confidence 665554 556888888763
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.51 E-value=1.5 Score=35.35 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=62.6
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee----cCCccceeEEEecCC----CCeEEEEe--cCCeE
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL----QGHAQDVKMVQWHPT----MDVLFSCS--YDNTI 116 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~----~~~~~~v~~v~~~p~----~~~l~s~s--~d~~v 116 (281)
-..-+.++|.|+|+++++--..+.|++++...+.. ..+..+ .........++++|+ +.++++-+ .++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 34457999999999888877688888876433322 222221 223456789999996 33444322 34455
Q ss_pred EEEeCCCCC-----CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 117 KVWWAEDTD-----SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 117 ~~w~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.-|.....+ ....+.+..-......|. -..|.|.|++.+.++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEEC
Confidence 545544311 111122211111122343 34689999998777754
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.2 Score=35.88 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=57.8
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee---cCCccceeEEEecCC---C-CeEEEEecC-----CeEE
Q 023500 50 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL---QGHAQDVKMVQWHPT---M-DVLFSCSYD-----NTIK 117 (281)
Q Consensus 50 v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~---~-~~l~s~s~d-----~~v~ 117 (281)
-+.++|.|+|+++++- .++.|++++ .+. ...+..+ .........++++|+ + .++++-+.. +.|.
T Consensus 33 P~~ia~~pdG~l~V~e-~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 33 PWALAFLPDGGMLIAE-RPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEEECTTSCEEEEE-TTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred ceEEEEcCCCeEEEEe-CCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4689999999866664 458888887 332 2222221 122345789999998 3 444544433 5666
Q ss_pred EEeCCCCCCCCceeeee-eee-ccCCccccEEEEEEccCCCEEEEe
Q 023500 118 VWWAEDTDSDNWHCVQT-ISE-SNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~-~~~-~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.++.........+.+.. +.. ....|. ...++|.|++.+.++-
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 66654321111111111 110 111233 3579999999766664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.47 E-value=1.6 Score=35.24 Aligned_cols=232 Identities=10% Similarity=-0.038 Sum_probs=120.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCeeE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
..+|.+..+++.++++ ..+.|+..+..+.....+ +. .......++|++.... +.+-...+.|..+++..... +
T Consensus 35 ~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~--~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 35 RRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLL--LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp SSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCcccccccCceeEee--cccceEEEeCCCCeeEEe--ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3455555553333333 234577777665543322 22 2344679999986555 45555677888887754332 1
Q ss_pred EeEeecCCccceeEEEecCC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 84 CVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
............+++.+. +.++++-...+.|.+.+.+... ...+.. ..-..+..++++|.+..|+...
T Consensus 109 --~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~------~~~l~~---~~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 109 --EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH------RKVLLW---QSLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp --EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEEC---TTCSCEEEEEEETTTTEEEEEE
T ss_pred --EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc------eEEEEe---CCCCCcceEEEecCcCeEEEec
Confidence 112222234567888875 4456666667888888765432 111111 1123467899998665554443
Q ss_pred -CC-CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC-Cc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 163 -DD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 163 -~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
.. +.|..++.+...... +....-.....+++++ ++ ++.+-...+.++.++..... ...
T Consensus 178 ~~~~~~I~r~~~dG~~~~~------------~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~------~~~ 239 (349)
T 3v64_C 178 WGNTPRIEASSMDGSGRRI------------IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH------RKA 239 (349)
T ss_dssp CSSSCEEEEEETTSCSCEE------------SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEE
T ss_pred cCCCCEEEEEeCCCCCcEE------------EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc------eEE
Confidence 33 667777665322110 0000112345566664 33 45555556677777553211 111
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
+... .-.....+++. +..++.+-...+.|...+
T Consensus 240 ~~~~---~~~~P~giav~--~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 240 VISQ---GLPHPFAITVF--EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EECS---SCSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeC---CCCCceEEEEE--CCEEEEecCCCCeEEEEE
Confidence 1111 12235567663 235666666667776665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.39 E-value=1.3 Score=37.36 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=58.1
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecC------CccceeEEEecCC----CCeEEEEec------
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG------HAQDVKMVQWHPT----MDVLFSCSY------ 112 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~------~~~~v~~v~~~p~----~~~l~s~s~------ 112 (281)
.-+.++|.|+|+++++-...+.|++++...+.. ..+..+.. .......++|+|+ +.++++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 446899999999888765545677665433322 22222221 2345668999995 444444432
Q ss_pred ------CCeEEEEeCCCCCC--CCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 113 ------DNTIKVWWAEDTDS--DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 113 ------d~~v~~w~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
...|.-++...... ...+.+.........| ....|.|.|++.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 12344443322110 1111111111111234 357899999998766644
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=1.4 Score=34.45 Aligned_cols=147 Identities=7% Similarity=0.090 Sum_probs=74.5
Q ss_pred CCCEEEEeeCC----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEEEecCCCeeE
Q 023500 14 SGKLLATASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMPGNEFE 83 (281)
Q Consensus 14 ~~~~l~tg~~d----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~~~~~~~~~ 83 (281)
++++++.|+.+ ..+.+||..++++..+..+........++.+ ++..++.||.+ ..+.++|.... .+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-SWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-EEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-ceE
Confidence 66788888865 5678889888877655544322222222222 56677777765 45777887543 333
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEec---------CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY---------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~---------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+..+......-.++. -++.+++.|+. -..+.+||++.. .|..+..+......| .++.+ +
T Consensus 132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~----~~~~~--~ 200 (306)
T 3ii7_A 132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE---TWTELCPMIEARKNH----GLVFV--K 200 (306)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTT---EEEEECCCSSCCBSC----EEEEE--T
T ss_pred eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCC---eEEECCCccchhhcc----eEEEE--C
Confidence 3222221111111222 24556666654 234667766543 354443322211122 12222 5
Q ss_pred CCEEEEeeCC-----CcEEEEeCCc
Q 023500 155 GDKLVSCSDD-----LTIKIWGADI 174 (281)
Q Consensus 155 ~~~l~s~~~d-----~~i~~w~~~~ 174 (281)
++.++.|+.+ ..+.+||...
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTT
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCC
Confidence 5566666643 3466777654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=1.4 Score=34.33 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCCEEEEee-CC-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----CcEEEEEecCCCe-
Q 023500 14 SGKLLATAS-FD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNE- 81 (281)
Q Consensus 14 ~~~~l~tg~-~d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~~w~~~~~~~- 81 (281)
++.+++.|+ .+ ..+.+||..++++..+..+........++. .++..++.||.+ ..+.++|+.....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 456777887 33 367889988877655443332222222222 356677777754 4678888764430
Q ss_pred -eEEeEeecCCccceeEEEecCCCCeEEEEecCC-----eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 82 -FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 82 -~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~-----~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
+..+..+......-..+.. ++.+++.|+.++ .+.++|.... .|..+..+......|. ++. .++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~----~~~--~~~ 160 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID---QWSMLGDMQTAREGAG----LVV--ASG 160 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSCCBSCE----EEE--ETT
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC---eEEECCCCCCCcccce----EEE--ECC
Confidence 3333222211111122222 456667766543 5667765432 3544433322111221 222 255
Q ss_pred CEEEEeeCC-----CcEEEEeCCc
Q 023500 156 DKLVSCSDD-----LTIKIWGADI 174 (281)
Q Consensus 156 ~~l~s~~~d-----~~i~~w~~~~ 174 (281)
..++.|+.+ ..+..||...
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEEECCCCCCcccceEEEEeCCC
Confidence 666666644 3466777653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.33 E-value=2.7 Score=37.50 Aligned_cols=221 Identities=9% Similarity=-0.036 Sum_probs=105.6
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEec
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWH 101 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~ 101 (281)
.+.|+..+..+.....+ +. ....+..++|.+.+..|+ +-...+.|+.+++..... ......+.........+++.
T Consensus 385 ~~~I~~id~~~~~~~~~--~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECC--SC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceee--ec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 34566666655433211 11 224456889998666554 445567888888753100 00111111112234567777
Q ss_pred CC-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-C-CcEEEEeCCccccc
Q 023500 102 PT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-D-LTIKIWGADITRMQ 178 (281)
Q Consensus 102 p~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d-~~i~~w~~~~~~~~ 178 (281)
+. +.++++-...+.|.+.+.+... ...+.. .....+..++++|.+..|+.... . +.|..++++.....
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~------~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVK------RKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCC------EEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred eeCCcEEEEeccCCeEEEEecCCCc------eEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee
Confidence 54 4455665666788888654321 111111 11123456888886555444332 2 56666655421110
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
.+ .. ..-.....|.++++ .++++-...+.|..++.... ....+.. ..........+++.
T Consensus 533 ---------~l--~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~------~~~~~~~-~~~~~~~P~glavd 593 (699)
T 1n7d_A 533 ---------SL--VT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILE-DEKRLAHPFSLAVF 593 (699)
T ss_dssp ---------EE--SC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS------CCEEECC-CSSSCSSCCCCEEE
T ss_pred ---------EE--Ee-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC------ceEEEEe-cCCcCCCceEeEEE
Confidence 00 00 00112334566643 34555556667777755321 1111111 11111223345555
Q ss_pred CCCCeeEEEeCCCCeEEEEEc
Q 023500 257 PGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
. ..++.+....+.|..++.
T Consensus 594 ~--~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 594 E--DKVFWTDIINEAIFSANR 612 (699)
T ss_dssp T--TEEEEECSTTTCEEEEET
T ss_pred C--CEEEEEeCCCCeEEEEEc
Confidence 4 357777777778888774
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.28 E-value=1.5 Score=34.22 Aligned_cols=147 Identities=11% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCCEEEEeeCC-----CcEEEEecCCCc---eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC-----cEEEEEecCCC
Q 023500 14 SGKLLATASFD-----ATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMPGN 80 (281)
Q Consensus 14 ~~~~l~tg~~d-----~~i~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~~w~~~~~~ 80 (281)
++++++.|+.+ +.+.+||..+++ +..+..+........++.+ ++..++.||.++ .+.++|+...
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~- 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID- 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-
Confidence 56788888865 358889987776 6555443322222222322 566777776543 5677776533
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecC-----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.+..+.........-.++.+ ++.+++.|+.+ ..+.++|+... .|..+..+......| .++.+ ++
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~----~~~~~--~~ 207 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG---HWTNVTPMATKRSGA----GVALL--ND 207 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT---EEEEECCCSSCCBSC----EEEEE--TT
T ss_pred eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC---cEEeCCCCCcccccc----eEEEE--CC
Confidence 33333332221111112222 55667777655 35677766543 354443222111112 12222 45
Q ss_pred CEEEEeeCC-----CcEEEEeCCc
Q 023500 156 DKLVSCSDD-----LTIKIWGADI 174 (281)
Q Consensus 156 ~~l~s~~~d-----~~i~~w~~~~ 174 (281)
..++.|+.+ ..+.+||.+.
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEEEEeCCCCCcccceEEEEeCCC
Confidence 666777654 3577777653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=94.19 E-value=1.8 Score=34.93 Aligned_cols=143 Identities=8% Similarity=0.097 Sum_probs=83.7
Q ss_pred CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC----CC---E-EEEecC--CCcEEEEEecCC-Cee
Q 023500 14 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS----GT---L-LATCGR--DKSVWIWEVMPG-NEF 82 (281)
Q Consensus 14 ~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~---~-l~s~~~--d~~v~~w~~~~~-~~~ 82 (281)
...+++.....+-+.+||.... .++.+.. +.++.|..-|+ |+ + +++.-. +++|.++++... .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~---~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGK---MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSC---EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcCCCc---EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3455666677788999998443 2445542 66777777663 22 2 333344 689999998532 222
Q ss_pred EEeEe----ecCCccceeEEEe--cCCCC--eEEEEecCCeEEEEeCCCCCC--CCceeeeeeeeccCCccccEEEEEEc
Q 023500 83 ECVSV----LQGHAQDVKMVQW--HPTMD--VLFSCSYDNTIKVWWAEDTDS--DNWHCVQTISESNNGHSSTIWALSFN 152 (281)
Q Consensus 83 ~~~~~----~~~~~~~v~~v~~--~p~~~--~l~s~s~d~~v~~w~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~ 152 (281)
..+.. +..-...+..+++ +|... +++....++.+..|++..... ...+.++++.. ..++-.+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-----gsq~EgcvvD 188 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-----NSQTEGMAAD 188 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-----SSCEEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-----CCCcceEEEc
Confidence 21111 0011145666777 67533 577888889999988754222 12334444432 2456677777
Q ss_pred cCCCEEEEeeCCCc
Q 023500 153 AKGDKLVSCSDDLT 166 (281)
Q Consensus 153 ~~~~~l~s~~~d~~ 166 (281)
+....|+.+-.+.-
T Consensus 189 d~~g~Lyv~eEd~G 202 (355)
T 3amr_A 189 DEYGRLYIAEEDEA 202 (355)
T ss_dssp TTTTEEEEEETTTE
T ss_pred CCCCeEEEecccce
Confidence 77778888887744
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=94.14 E-value=1.7 Score=34.49 Aligned_cols=156 Identities=8% Similarity=-0.042 Sum_probs=88.7
Q ss_pred eeEEEEcCC-CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCCCeeE
Q 023500 6 VRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFE 83 (281)
Q Consensus 6 i~~~~~~~~-~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~~~~~ 83 (281)
...++|++. +.++.+-...+.|..++..+..... ..+...-.....+++.+. +.+.++-...+.|.+.++..... .
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~ 114 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-K 114 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-E
Confidence 456788884 4555665566778888776542111 111111234567888874 45556666778898888753221 1
Q ss_pred EeEeecCCccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 84 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 84 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
. ........-..+++.|.+..++.+.. .+.|...+.+... ...+.. ..-...+.+++++++..|+.+
T Consensus 115 ~--l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~---~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 115 V--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIIN---SEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp E--EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEEC---SSCSCEEEEEEETTTTEEEEE
T ss_pred E--EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEE---CCCCCccEEEEeccCCEEEEE
Confidence 1 12233344678899987665554442 4677666554321 111111 112346789999876665555
Q ss_pred e-CCCcEEEEeCCc
Q 023500 162 S-DDLTIKIWGADI 174 (281)
Q Consensus 162 ~-~d~~i~~w~~~~ 174 (281)
. ..+.|..++.+.
T Consensus 184 D~~~~~I~~~d~dG 197 (318)
T 3sov_A 184 DAKLNFIHKSNLDG 197 (318)
T ss_dssp ETTTTEEEEEETTS
T ss_pred ECCCCEEEEEcCCC
Confidence 4 566788887753
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.04 E-value=1.7 Score=34.09 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=73.8
Q ss_pred CCCEEEEeeC----C-----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-----CcEEEEEecCC
Q 023500 14 SGKLLATASF----D-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPG 79 (281)
Q Consensus 14 ~~~~l~tg~~----d-----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~~w~~~~~ 79 (281)
++++++.|+. + +.+.+||..+.++..+..+........++.+ ++..++.||.+ ..+.++|+...
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5677788876 2 3578888888776655443322222222332 56677777644 35677776533
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecC-----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccC
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (281)
.+..+..+......-.++.+ ++.+++.|+.+ ..+.++|+... .|..+..+......| .++.+ +
T Consensus 148 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~----~~~~~--~ 215 (308)
T 1zgk_A 148 -EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN---EWRMITAMNTIRSGA----GVCVL--H 215 (308)
T ss_dssp -EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT---EEEECCCCSSCCBSC----EEEEE--T
T ss_pred -eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC---eEeeCCCCCCccccc----eEEEE--C
Confidence 33322222211111122222 45666776655 35677766432 344333222111122 22222 5
Q ss_pred CCEEEEeeCC-----CcEEEEeCCc
Q 023500 155 GDKLVSCSDD-----LTIKIWGADI 174 (281)
Q Consensus 155 ~~~l~s~~~d-----~~i~~w~~~~ 174 (281)
+..++.|+.+ ..+.+||.+.
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CEEEEEeCCCCCCccceEEEEeCCC
Confidence 5666667654 3577777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.00 E-value=1.7 Score=33.95 Aligned_cols=104 Identities=6% Similarity=-0.043 Sum_probs=56.0
Q ss_pred CCEEEEeeCC--CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----CcEEEEEecCCCeeEEeEee
Q 023500 15 GKLLATASFD--ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----KSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 15 ~~~l~tg~~d--~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~~~~~~~~~~~~ 88 (281)
+.+++.|+.+ +.+.+||..++++..+..+........++. .++..++.||.+ ..+.++|.... .+..+..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCC
Confidence 3466677754 578899988887765544332222222232 356677777755 56777776543 33333322
Q ss_pred cCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCC
Q 023500 89 QGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAED 123 (281)
Q Consensus 89 ~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~ 123 (281)
......-..+.+ ++.+++.|+.+ ..+.+||...
T Consensus 89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 211111122222 45667777765 3577776654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.44 E-value=2.7 Score=34.38 Aligned_cols=215 Identities=7% Similarity=-0.071 Sum_probs=113.0
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.+.|+..+..+.....+. . .......++|.+.+. ++++-...+.|..+++..... ...+.........+++.+
T Consensus 95 ~~~I~~i~~~~~~~~~~~--~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~ 168 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLL--N-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDW 168 (386)
T ss_dssp BSCEEEECTTSCCCEEEE--C-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEEET
T ss_pred CccceeeccCCCcEEEEe--c-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEEEe
Confidence 356777777655433222 2 234567899998555 455556677888887754331 112222223456788887
Q ss_pred CC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-C-CcEEEEeCCcccccc
Q 023500 103 TM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-D-LTIKIWGADITRMQS 179 (281)
Q Consensus 103 ~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d-~~i~~w~~~~~~~~~ 179 (281)
.+ .++++-...+.|.+.+.+... ...+.. .....+..++++|.+..|+.... . +.|..++.+.....
T Consensus 169 ~~g~lY~~d~~~~~I~~~~~dg~~------~~~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~- 238 (386)
T 3v65_B 169 VHDKLYWTDSGTSRIEVANLDGAH------RKVLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR- 238 (386)
T ss_dssp TTTEEEEEETTTTEEEECBTTSCS------CEEEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-
T ss_pred CCCeEEEEcCCCCeEEEEeCCCCc------eEEeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-
Confidence 54 455666666778776554321 111111 11245678999987665555443 3 56776665432110
Q ss_pred CCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 180 GDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
.+....-.....+.+++ +.++.+-...+.++.++.... ....+... .......+++.
T Consensus 239 -----------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------~~~~~~~~---~~~~P~giav~- 297 (386)
T 3v65_B 239 -----------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------HRKAVISQ---GLPHPFAITVF- 297 (386)
T ss_dssp -----------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------SCEEEECS---SCSSEEEEEEE-
T ss_pred -----------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------eeEEEEEC---CCCCceEEEEE-
Confidence 01001112345566664 334555556667777754321 11111111 12335667773
Q ss_pred CCCeeEEEeCCCCeEEEEE
Q 023500 258 GERRLLASASDDGMIKIWE 276 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~ 276 (281)
+..++.+....+.|..++
T Consensus 298 -~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 298 -EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp -TTEEEEEETTTTEEEEEE
T ss_pred -CCEEEEeeCCCCeEEEEE
Confidence 235677777777777776
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=1.3 Score=35.84 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=57.5
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee---cCCccceeEEEecCC----CCeEEEEec---C----C
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL---QGHAQDVKMVQWHPT----MDVLFSCSY---D----N 114 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~---~~~~~~v~~v~~~p~----~~~l~s~s~---d----~ 114 (281)
.-..++|.|+|+++++- .++.|++++ ..+ . +.+..+ .........++++|+ +.++++-+. + +
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g~I~~~d-~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPGRLVLIS-PSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTTEEEEEC-SSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCeEEEEcCCCeEEEEe-CCCEEEEEe-CCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34689999999866654 458888776 222 2 222221 122345788999997 444454442 3 4
Q ss_pred eEEEEeCCCCC--CCCceeeee-eeeccCCccccEEEEEEccCCCEEEEee
Q 023500 115 TIKVWWAEDTD--SDNWHCVQT-ISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 115 ~v~~w~~~~~~--~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.|..++..... ....+.+.. +. ....|. ...+.|.|++.+.++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~--~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHN--GGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE-CCSSCC--CCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC-CCCCcC--CceEEECCCCcEEEEEC
Confidence 56666554321 001111111 11 112233 35689999998766643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.18 E-value=2.5 Score=33.16 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=71.7
Q ss_pred CCCEEEEeeCC----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC----C-----CcEEEEEecCCC
Q 023500 14 SGKLLATASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR----D-----KSVWIWEVMPGN 80 (281)
Q Consensus 14 ~~~~l~tg~~d----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----d-----~~v~~w~~~~~~ 80 (281)
++.+++.|+.+ ..+.+||..+.++..+..+.........+. .++..++.||. + ..+.++|+...
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~- 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN- 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT-
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC-
Confidence 56788888742 368889988877665543322111212222 25666777775 2 35777776533
Q ss_pred eeEEeEeecCCccceeEEEecCCCCeEEEEecC-----CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 81 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
.+..+..+......-..+.+ ++.+++.|+.+ ..+.++|.... .|..+..+.....+| .++.+ ++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~----~~~~~--~~ 169 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGV----GVAVL--NR 169 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT---EEEECCCCSSCCBSC----EEEEE--TT
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCccccce----EEEEE--CC
Confidence 33332222211111122222 45566666544 35666766432 344333322211122 12222 55
Q ss_pred CEEEEeeCC-----CcEEEEeCCc
Q 023500 156 DKLVSCSDD-----LTIKIWGADI 174 (281)
Q Consensus 156 ~~l~s~~~d-----~~i~~w~~~~ 174 (281)
..++.|+.+ ..+..||...
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEEEeCCCCCCcCceEEEEeCCC
Confidence 666666644 3466777653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=3.1 Score=33.67 Aligned_cols=156 Identities=8% Similarity=0.044 Sum_probs=87.5
Q ss_pred eEEEEcCCCCEEEEee------------CCCcEEEEecCC--CceeeeeeecC-----CCCCeeEEEEcC--CCC-EEEE
Q 023500 7 RSCAWSPSGKLLATAS------------FDATTCIWEDVG--GDYECVATLEG-----HENEVKSVSWNA--SGT-LLAT 64 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~------------~d~~i~lw~~~~--~~~~~~~~~~~-----h~~~v~~v~~~~--~~~-~l~s 64 (281)
-.+++.|+|..+++++ .+|.|.++|..+ .+...+. +.+ ....-..+.+.+ ++. +|+.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4677888887766652 688999999763 2332232 222 223556777755 454 3433
Q ss_pred e--c-CCCcEEEEEecCCC-eeEEeEeecCC-ccceeEEEecCCCCeEEEEec---C------------CeEEEEeCCCC
Q 023500 65 C--G-RDKSVWIWEVMPGN-EFECVSVLQGH-AQDVKMVQWHPTMDVLFSCSY---D------------NTIKVWWAEDT 124 (281)
Q Consensus 65 ~--~-~d~~v~~w~~~~~~-~~~~~~~~~~~-~~~v~~v~~~p~~~~l~s~s~---d------------~~v~~w~~~~~ 124 (281)
+ + .+.+|-+|++.... ....+..+.+. -...+.+.+.|++..+++... | ..-++|.+...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 3 2 25678888887543 33334444432 234578888898887776441 1 12233333221
Q ss_pred CCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCC
Q 023500 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGAD 173 (281)
Q Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~ 173 (281)
.. ..+.. .-...+.++|+|+++.|+.+. ..+.|..|+.+
T Consensus 212 ---~~---~~~~~----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 212 ---DV---RVVAE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ---CC---EEEEE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ---eE---EEeec----CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 11 11111 113467899999998766654 56788888764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=3.2 Score=33.65 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=59.3
Q ss_pred ceeEEEEcCCCCEEEEeeC-----------------CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEE-Eec
Q 023500 5 TVRSCAWSPSGKLLATASF-----------------DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCG 66 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~-----------------d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~ 66 (281)
..+.+++.++|+++++... .+.+.-++. ++...+ .. .-..-+.++|+||++.|. +-+
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~--~~-~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVV--AE-GFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEE--EE-EESSEEEEEECTTSSEEEEEEG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEe--ec-CCcccCcceECCCCCEEEEEeC
Confidence 4578889999998877541 133434443 222211 11 123457899999998765 445
Q ss_pred CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecC-CCCeEEEEecC
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYD 113 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~d 113 (281)
..+.|..|++.........+.+. -....-.++..+ ++++.+++..+
T Consensus 241 ~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 241 LAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 67899999986443332223331 123345566677 47766665544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.35 E-value=4.7 Score=34.30 Aligned_cols=159 Identities=13% Similarity=0.029 Sum_probs=87.3
Q ss_pred eEEEEcC-CCCEEEEeeCCCcEEEEecC-------CCce------------eeeeeecCCCCCeeEEEEcCCCCE-EEEe
Q 023500 7 RSCAWSP-SGKLLATASFDATTCIWEDV-------GGDY------------ECVATLEGHENEVKSVSWNASGTL-LATC 65 (281)
Q Consensus 7 ~~~~~~~-~~~~l~tg~~d~~i~lw~~~-------~~~~------------~~~~~~~~h~~~v~~v~~~~~~~~-l~s~ 65 (281)
..++++| ++.++++-..++.|..+|.. ++.. ..+... +....-+.++|+|+|+. .++-
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEE
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEe
Confidence 5678899 45666676777889999876 4432 112222 12233468999999995 5555
Q ss_pred cCCCcEEEEEecCCC-ee---EEeEee---cCCc---------ccee-EEEec-------CCCCeEEEEecCCeEEEEeC
Q 023500 66 GRDKSVWIWEVMPGN-EF---ECVSVL---QGHA---------QDVK-MVQWH-------PTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~-~~---~~~~~~---~~~~---------~~v~-~v~~~-------p~~~~l~s~s~d~~v~~w~~ 121 (281)
...+.|+.++..... .. ....-. .+.. ..-. .+... +.++++++-+..+.|+.++.
T Consensus 329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 667788887654221 11 011110 1110 0112 33343 45667777777788888753
Q ss_pred CCCCCCCceeeeeeeec--------------------cCCccccEEEEEEccC-CCEEEEeeCCCcEEEEeCC
Q 023500 122 EDTDSDNWHCVQTISES--------------------NNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~~w~~~ 173 (281)
+. .+.++.-. ..+.-..+..|+++++ +.++++=.....|+.++.+
T Consensus 409 ~G-------~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 409 EG-------IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TC-------BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CC-------CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 21 01111100 0112234678999986 6555555566788887654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=92.13 E-value=4.9 Score=34.97 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCC
Q 023500 68 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124 (281)
Q Consensus 68 d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~ 124 (281)
++.|..||+..++....... . . .+..-.....+.+++.++.|+.++.+|.++.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-~--~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-H--L-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-S--S-CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cceEEEEECCCCCEEEEecC-C--C-CCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 57788888877664322221 1 1 1111111123567888999999999988765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.13 E-value=2.7 Score=33.63 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=28.0
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEEEe
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEV 76 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~~ 76 (281)
+.+.+||..+..+..+..+......-.++.. -++..++.||.+ ..+..+++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence 4688899888877666544321111122222 255666666642 35666765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=6.5 Score=34.10 Aligned_cols=65 Identities=5% Similarity=0.006 Sum_probs=38.5
Q ss_pred CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCC--CeeEEEEcC--CCCEEEEecC------CCcEEEEEecCCCee
Q 023500 15 GKLLATASFDATTCIWEDVGGDYECVATLEGHEN--EVKSVSWNA--SGTLLATCGR------DKSVWIWEVMPGNEF 82 (281)
Q Consensus 15 ~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~--~~~~l~s~~~------d~~v~~w~~~~~~~~ 82 (281)
+..+..++.|+.+..+|..+++......+..+.. .+.+ +| .+..++.++. ++.|..+|..+++..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~---~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQ---APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCS---CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceecc---CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 4566677889999999988876544333332211 1211 12 1334444433 789999998877653
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.42 E-value=5.1 Score=33.74 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred eEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeEeec---------CCccceeEEEecCC----CCeEEEEecC---
Q 023500 51 KSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQ---------GHAQDVKMVQWHPT----MDVLFSCSYD--- 113 (281)
Q Consensus 51 ~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~~~~---------~~~~~v~~v~~~p~----~~~l~s~s~d--- 113 (281)
+.++|.|+|. +|+.+...|.|++++.........+..+. ........++++|+ +.++++-+.+
T Consensus 17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~ 96 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQER 96 (463)
T ss_dssp EEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCS
T ss_pred eEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCC
Confidence 6889999986 45555677888888632111001111111 11345678999997 3444443321
Q ss_pred ---------CeEEEEeCCCCC-----CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC
Q 023500 114 ---------NTIKVWWAEDTD-----SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 114 ---------~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
..|.-|.+.... ....+.+..+......|. -..|.|.||+.+.++.+.
T Consensus 97 ~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 97 WAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp SCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECC
T ss_pred cccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCC
Confidence 133334443211 112233333332233464 467999999986666543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.25 E-value=4.4 Score=31.76 Aligned_cols=150 Identities=9% Similarity=0.106 Sum_probs=72.2
Q ss_pred EcCCCCEEEEeeC-----C------CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC--------CcE
Q 023500 11 WSPSGKLLATASF-----D------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD--------KSV 71 (281)
Q Consensus 11 ~~~~~~~l~tg~~-----d------~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--------~~v 71 (281)
...++++++.|+. . ..+..||..++++..+..+.........+.+ ++..++.||.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence 3457788888884 1 1266788877766544433211111122222 56666777732 357
Q ss_pred EEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-C-----CeEEEEeCCCCCCCCceeeeeeeeccCCcccc
Q 023500 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-D-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSST 145 (281)
Q Consensus 72 ~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d-----~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~ 145 (281)
.++|.... .+..+..+......-..+. .++.+++.|+. + ..+.++|+... .|..+..+......|.
T Consensus 120 ~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~-- 191 (315)
T 4asc_A 120 MCYDRLSF-KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF---EWKELAPMQTARSLFG-- 191 (315)
T ss_dssp EEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT---EEEECCCCSSCCBSCE--
T ss_pred EEECCCCC-cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC---eEEECCCCCCchhceE--
Confidence 77777543 3333322221111111111 34556677765 2 35677766543 3544433322111221
Q ss_pred EEEEEEccCCCEEEEeeCCC-----cEEEEeCCc
Q 023500 146 IWALSFNAKGDKLVSCSDDL-----TIKIWGADI 174 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~ 174 (281)
++.+ ++..++.|+.++ .+.+||.+.
T Consensus 192 --~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 192 --ATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp --EEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred --EEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 2222 556666666543 356666653
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.78 E-value=6.5 Score=33.11 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=59.2
Q ss_pred eeEEEEcCCCC--EEEEeeCCCcEEEEecCCCc-eeeeeeec---------CCCCCeeEEEEcCC----CCEEEEecC--
Q 023500 6 VRSCAWSPSGK--LLATASFDATTCIWEDVGGD-YECVATLE---------GHENEVKSVSWNAS----GTLLATCGR-- 67 (281)
Q Consensus 6 i~~~~~~~~~~--~l~tg~~d~~i~lw~~~~~~-~~~~~~~~---------~h~~~v~~v~~~~~----~~~l~s~~~-- 67 (281)
-+.++|.|+|+ +|+ +...|.|++++..... ...+..+. +.......|+|+|+ +.+.++-+.
T Consensus 16 P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp EEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred ceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 46789999996 555 4678899998754321 11112111 12456789999996 444444321
Q ss_pred C----------CcEEEEEecCC--C-----eeEEeEeec--CCccceeEEEecCCCCeEEEEecCC
Q 023500 68 D----------KSVWIWEVMPG--N-----EFECVSVLQ--GHAQDVKMVQWHPTMDVLFSCSYDN 114 (281)
Q Consensus 68 d----------~~v~~w~~~~~--~-----~~~~~~~~~--~~~~~v~~v~~~p~~~~l~s~s~d~ 114 (281)
+ ..|.-|.+... . +.+.+..+. ........+.|.|++.++++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 12333554321 1 112222211 2223467899999998888766543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=8 Score=33.82 Aligned_cols=64 Identities=6% Similarity=0.073 Sum_probs=36.8
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCC--CeeEEEEcCCCCEEEEec------CCCcEEEEEecCCCee
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHEN--EVKSVSWNASGTLLATCG------RDKSVWIWEVMPGNEF 82 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~------~d~~v~~w~~~~~~~~ 82 (281)
++.++.|+.+..+|..+++......+..+.. .+.+--.-.++ .++.++ .++.|..+|..+++..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence 6678889999999988887543333322111 12110000134 444443 4789999998877653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=90.50 E-value=8.2 Score=33.57 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=36.4
Q ss_pred CcEEEEecCCCceeeeeeecCCC--------CCeeEEEEc-CCCC---EEEEecCCCcEEEEEecCCCe
Q 023500 25 ATTCIWEDVGGDYECVATLEGHE--------NEVKSVSWN-ASGT---LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~--------~~v~~v~~~-~~~~---~l~s~~~d~~v~~w~~~~~~~ 81 (281)
+.|..+|..+++.........|. .++ -+... .+|+ .++.++.++.+.++|..+++.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 57888998888765444444443 122 12222 4674 678899999999999876654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=89.92 E-value=7.2 Score=32.02 Aligned_cols=220 Identities=9% Similarity=-0.053 Sum_probs=114.0
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEec
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWH 101 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~ 101 (281)
.+.|+..+........+ ...-..+..++|++.... ..+-...+.|..+++..... ................+++.
T Consensus 91 ~~~I~~i~l~~~~~~~~---~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD 167 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167 (400)
T ss_dssp TTEEEEECTTSCSCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEE
T ss_pred cceeEEEccCCcceeEe---ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEE
Confidence 46677777765543322 234466789999986554 45555677888887753210 00112222233456788888
Q ss_pred C-CCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC--CCcEEEEeCCccccc
Q 023500 102 P-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD--DLTIKIWGADITRMQ 178 (281)
Q Consensus 102 p-~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~~w~~~~~~~~ 178 (281)
+ .++++++-...+.|.+.+.+... ...+.. ..-..+..++++|.+..|+.... .+.|...+++.....
T Consensus 168 ~~~~~lY~~d~~~~~I~~~~~~g~~------~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 168 WIHSNIYWTDSVLGTVSVADTKGVK------RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTCS------EEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred ecCCceEEEECCCCeEEEEeCCCCc------eEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 7 45566676677888887665321 111111 11234678999986665554442 367777766532111
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
.+....-.....+.+++. .++.+-.....++.++.... ....+.. ....-.....++..
T Consensus 239 ------------~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~------~~~~~~~-~~~~l~~P~gl~v~ 299 (400)
T 3p5b_L 239 ------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILE-DEKRLAHPFSLAVF 299 (400)
T ss_dssp ------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------CCEEEEE-CSSTTSSEEEEEEE
T ss_pred ------------EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC------ccEEEEe-CCCCCCCCEEEEEe
Confidence 000001123455666642 34455555667777755331 1111211 11112234456663
Q ss_pred CCCCeeEEEeCCCCeEEEEE
Q 023500 257 PGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw~ 276 (281)
+..++.+....+.|..++
T Consensus 300 --~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 300 --EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp --TTEEEEEESSSCSEEEEE
T ss_pred --CCEEEEecCCCCeEEEEE
Confidence 335666766667777666
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=89.56 E-value=6.5 Score=30.98 Aligned_cols=220 Identities=8% Similarity=-0.044 Sum_probs=115.7
Q ss_pred CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEecC
Q 023500 25 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 25 ~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~p 102 (281)
+.|+..+..+.....+ +. .-.....++|++.+. .+++-..++.|..+++..... ......+...-.....+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~--~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEeh--hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 5578878766543322 22 335567999998655 455656678888888753100 011112222223457888886
Q ss_pred C-CCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC--CcEEEEeCCcccccc
Q 023500 103 T-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD--LTIKIWGADITRMQS 179 (281)
Q Consensus 103 ~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--~~i~~w~~~~~~~~~ 179 (281)
. ++++++-...+.|.+.+.+... ...+.. ..-..+..++++|.+..|+..... +.|..++.+....
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~------~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-- 155 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVK------RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-- 155 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS------EEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--
T ss_pred cCCeEEEEECCCCEEEEEeCCCCc------eEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--
Confidence 4 4456666677889888765321 111211 112356789999866655544432 5677776543211
Q ss_pred CCCCcccceeEEeecccCcceEEEEeCCC--ceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC
Q 023500 180 GDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257 (281)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 257 (281)
+ .+....-.....+.++++ .++.+-...+.+..++.... ....+.. ....-.....+++..
T Consensus 156 -------~---~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~------~~~~~~~-~~~~~~~P~giav~~ 218 (316)
T 1ijq_A 156 -------Y---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILE-DEKRLAHPFSLAVFE 218 (316)
T ss_dssp -------E---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEEE-CTTTTSSEEEEEEET
T ss_pred -------E---EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC------ceEEEee-cCCccCCcEEEEEEC
Confidence 0 010001123455666643 34555556667777765421 1111211 111122356677753
Q ss_pred CCCeeEEEeCCCCeEEEEEc
Q 023500 258 GERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 258 ~~~~~~~s~~~Dg~v~iw~~ 277 (281)
..++.+....+.|..++.
T Consensus 219 --~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 219 --DKVFWTDIINEAIFSANR 236 (316)
T ss_dssp --TEEEEEETTTTEEEEEET
T ss_pred --CEEEEEECCCCeEEEEeC
Confidence 457777777778877774
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=89.47 E-value=3.5 Score=33.27 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=53.4
Q ss_pred eeEEEEcCCCC-EEEEecCCCcEEEEEecCCCeeEEeE----eecCCccceeEEEecCC----CCeEEEEec-------C
Q 023500 50 VKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVS----VLQGHAQDVKMVQWHPT----MDVLFSCSY-------D 113 (281)
Q Consensus 50 v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~~~~~----~~~~~~~~v~~v~~~p~----~~~l~s~s~-------d 113 (281)
-+.++|.|+|+ ++++ ...+.|++++. .+.....+. +..........++++|+ +.++++-+. .
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999 5555 45688888863 221100111 11112335678999996 444444333 2
Q ss_pred CeEEEEeCCCCCC--CCceeee-eeee-ccCCccccEEEEEEccCCCEEEEe
Q 023500 114 NTIKVWWAEDTDS--DNWHCVQ-TISE-SNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 114 ~~v~~w~~~~~~~--~~~~~~~-~~~~-~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
..|..++...... ...+.+. .+.. ....|. ...+.|.|++.+.++-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEE
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEE
Confidence 2454444432211 1111111 1110 011232 2469999999655553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=10 Score=33.10 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=45.2
Q ss_pred EEEcCCCCEEEEeeCC----------------CcEEEEecCCCceeeeeeecCCCC--------CeeEEEEc-CCC---C
Q 023500 9 CAWSPSGKLLATASFD----------------ATTCIWEDVGGDYECVATLEGHEN--------EVKSVSWN-ASG---T 60 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d----------------~~i~lw~~~~~~~~~~~~~~~h~~--------~v~~v~~~-~~~---~ 60 (281)
.++.++..++..+..+ +.|..+|..+++.........|.. ++ -+... .+| .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEE
Confidence 4566766666555544 378888988887654444444421 12 12232 467 4
Q ss_pred EEEEecCCCcEEEEEecCCCe
Q 023500 61 LLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 61 ~l~s~~~d~~v~~w~~~~~~~ 81 (281)
.++.++.++.+.+.|..+++.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEECCCcEEEEEECCCCCE
Confidence 677788999999999877654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=88.72 E-value=17 Score=34.66 Aligned_cols=224 Identities=10% Similarity=0.037 Sum_probs=109.7
Q ss_pred EEEEecCCCceeeeeeecCCCCCeeEEE---EcCC-CCEEEEec----------CCCcEEEEEecCCCeeEEeEeecCCc
Q 023500 27 TCIWEDVGGDYECVATLEGHENEVKSVS---WNAS-GTLLATCG----------RDKSVWIWEVMPGNEFECVSVLQGHA 92 (281)
Q Consensus 27 i~lw~~~~~~~~~~~~~~~h~~~v~~v~---~~~~-~~~l~s~~----------~d~~v~~w~~~~~~~~~~~~~~~~~~ 92 (281)
++|.|..+.+......+.. .+.+.|++ |..+ ..+|+.|- ..|.|.++++.. ...+.+.... ..
T Consensus 809 i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~-~kL~lv~~~~-v~ 885 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD-GKLQTVAEKE-VK 885 (1158)
T ss_dssp EEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET-TEEEEEEEEE-ES
T ss_pred EEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC-CEEEEEEEEE-cC
Confidence 5666665544322333332 34444544 3332 35666553 247899999863 3333332221 23
Q ss_pred cceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeC
Q 023500 93 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172 (281)
Q Consensus 93 ~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~ 172 (281)
+.+++++-- .+ .+++| -..+|++|++..... ++ ..... +.. +..+.....+++++.|+.-..+.+...
T Consensus 886 g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~-----L~-~~~~~--~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKE-----LR-TECNH--YNN-IMALYLKTKGDFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSC-----EE-EEEEE--CCC-SCEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred CcCEEEeee-CC-EEEEE-cCCEEEEEECCCCce-----EE-EEeec--ccc-EEEEEEeccCCEEEEEEhhheEEEEEE
Confidence 456665432 23 44443 458999998865321 11 11100 111 222333334668888876666766532
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCC-CCCee
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVN 251 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 251 (281)
+... . +.......+....+.++.+-.+..++.+-.++.+.++........+.... .+......| ...|+
T Consensus 954 ~~~~-------~--~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~-~L~~~~~fhlG~~vt 1023 (1158)
T 3ei3_A 954 KPME-------G--NFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQ-HLQEVGLFHLGEFVN 1023 (1158)
T ss_dssp ETTT-------T--EEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGG-BEEEEEEEECSSCEE
T ss_pred EcCC-------C--eEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccc-eeeeEEEEeCCCcEe
Confidence 2110 0 11122223456777787776667777777888888876654322211111 111111122 34466
Q ss_pred EEE---EcCCC--------CeeEEEeCCCCeEEEE
Q 023500 252 SVQ---WSPGE--------RRLLASASDDGMIKIW 275 (281)
Q Consensus 252 ~~~---~~~~~--------~~~~~s~~~Dg~v~iw 275 (281)
++. +.+.+ ...++-++.+|.|-+.
T Consensus 1024 ~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1024 VFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred eEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 664 33322 2335567778887554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=12 Score=32.86 Aligned_cols=157 Identities=9% Similarity=-0.038 Sum_probs=85.9
Q ss_pred ceeEEEEcCCCCE-EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~~~-l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
....++|++.+.. +.+=...+.|..++..+.... ...+..--.....+++.+.+. +.++-...+.|.+.++.....
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~-~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~- 118 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR- 118 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----C-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce-EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-
Confidence 4567888886554 444344566777776544211 112222224567899998555 455666778898888753321
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
. ......-..-..+++.|....++.+.. .+.|...+++... . ..+.. ..-..+..+++++++..|+.
T Consensus 119 ~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~---~---~~l~~---~~~~~P~Glald~~~~~LY~ 187 (619)
T 3s94_A 119 K--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---R---FIIIN---SEIYWPNGLTLDYEEQKLYW 187 (619)
T ss_dssp E--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS---C---EEEEC---SSCSSEEEEEEETTTTEEEE
T ss_pred E--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc---e---EEEEe---CCCCCCcEEEEEccCCEEEE
Confidence 1 112233344678899997665554443 2455544443221 1 11111 11245688999987666655
Q ss_pred ee-CCCcEEEEeCCc
Q 023500 161 CS-DDLTIKIWGADI 174 (281)
Q Consensus 161 ~~-~d~~i~~w~~~~ 174 (281)
+. ..+.|..++.+.
T Consensus 188 aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 188 ADAKLNFIHKSNLDG 202 (619)
T ss_dssp EETTTCCEEEESSSC
T ss_pred EeCCCCeEEEecCCC
Confidence 54 456788887764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.09 E-value=8.1 Score=30.22 Aligned_cols=143 Identities=8% Similarity=0.119 Sum_probs=67.5
Q ss_pred EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-----C--C----cEEEEEecCCCeeEEe
Q 023500 17 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----D--K----SVWIWEVMPGNEFECV 85 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d--~----~v~~w~~~~~~~~~~~ 85 (281)
+++.|+ ..+..||+.++++.. ..+..............++..++.||. . . .+..+|.... .+..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEEC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEEC
Confidence 455666 568999998887653 333222122222233457777777773 1 1 2556665432 33322
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecC--------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYD--------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d--------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
..+......-..+.+ ++.+++.|+.+ ..+.++|.... .|+.+..+.....+|. ++. .++..
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~----~~~--~~~~i 151 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLPYVVYGHT----VLS--HMDLV 151 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCSSCCBSCE----EEE--ETTEE
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCCCccccee----EEE--ECCEE
Confidence 222111111111222 45566666642 35677766542 3544433322111221 122 34556
Q ss_pred EEEeeC-C-----CcEEEEeCCc
Q 023500 158 LVSCSD-D-----LTIKIWGADI 174 (281)
Q Consensus 158 l~s~~~-d-----~~i~~w~~~~ 174 (281)
++.|+. + ..+..||...
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTT
T ss_pred EEEeCCCCCCcccceEEEEeCCC
Confidence 666665 2 3566777653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=14 Score=32.58 Aligned_cols=155 Identities=9% Similarity=-0.002 Sum_probs=90.3
Q ss_pred ceeEEEEcCCC-CEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCee
Q 023500 5 TVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 5 ~i~~~~~~~~~-~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.+..++|++.+ .++.+-..++.|..++..+...+.+. ..--.....+++.+.+.. .++-...+.|.+.++.....
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~--~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~- 114 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV--EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR- 114 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE--eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-
Confidence 45688999855 45556566788888877654432222 211234568888876554 45656677888888753321
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.. .....-..-+.+++.|....++.+.. .+.|...+++... ...+.. .-..+..+++++++..|+.
T Consensus 115 ~~--l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------~~~l~~----~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 115 QV--LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------RTTLVP----NVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EE--EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEEC----SCSSEEEEEEETTTTEEEE
T ss_pred EE--EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc------eEEEEC----CCCCcceEEEccccCEEEE
Confidence 11 11223344689999996555544443 4566655554332 111111 1245678999997666665
Q ss_pred ee-CCCcEEEEeCCc
Q 023500 161 CS-DDLTIKIWGADI 174 (281)
Q Consensus 161 ~~-~d~~i~~w~~~~ 174 (281)
+. ..+.|..++.+.
T Consensus 183 aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 183 TDLDTNLIESSNMLG 197 (628)
T ss_dssp EETTTTEEEEEETTS
T ss_pred EECCCCEEEEEcCCC
Confidence 54 456788887653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.54 E-value=16 Score=33.12 Aligned_cols=220 Identities=9% Similarity=-0.049 Sum_probs=111.1
Q ss_pred CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCC-EEEEecCCCcEEEEEecCCCe-eEEeEeecCCccceeEEEec
Q 023500 24 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWH 101 (281)
Q Consensus 24 d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~v~~v~~~ 101 (281)
...|+..+........ +......+..++|.+... ++++-...+.|+.+++..... ......+.........|++.
T Consensus 403 ~~~Ir~i~l~~~~~~~---l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp BSSEEEECTTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred ccceeEeeccCCccee---eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 4556666665444322 222345677899998544 555666677888888753211 01122233233456788888
Q ss_pred CCC-CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC--CCcEEEEeCCccccc
Q 023500 102 PTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD--DLTIKIWGADITRMQ 178 (281)
Q Consensus 102 p~~-~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~~w~~~~~~~~ 178 (281)
+.+ +++++-...+.|.+.+++... ...+.. ..-..+..|+++|....|+.... .+.|...+++.....
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~------~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVK------RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSS------EEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCe------EEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 766 456666677888888765432 111211 11234778999987655555442 256777766532211
Q ss_pred cCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 179 SGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
.+....-.....|.+++ +.++.+-.....|+.++.... ....+... ...-....+|++.
T Consensus 551 ------------~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~------~~~~v~~~-~~~l~~P~glav~ 611 (791)
T 3m0c_C 551 ------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILED-EKRLAHPFSLAVF 611 (791)
T ss_dssp ------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEEEC-TTTTSSEEEEEEE
T ss_pred ------------EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC------ceEEEecC-CCccCCCCEEEEe
Confidence 11111112344555553 234444445556666655322 11122211 1111223456654
Q ss_pred CCCCeeEEEeCCCCeEEEEE
Q 023500 257 PGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 257 ~~~~~~~~s~~~Dg~v~iw~ 276 (281)
. .+++.+-...+.|...+
T Consensus 612 ~--~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 612 E--DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp T--TEEEEEETTTTEEEEEE
T ss_pred C--CEEEEEECCCCEEEEEe
Confidence 3 35676766666666655
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.73 E-value=11 Score=29.44 Aligned_cols=150 Identities=8% Similarity=0.133 Sum_probs=70.0
Q ss_pred EcCCCCEEEEeeC----CC-------cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC-------CcEE
Q 023500 11 WSPSGKLLATASF----DA-------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-------KSVW 72 (281)
Q Consensus 11 ~~~~~~~l~tg~~----d~-------~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-------~~v~ 72 (281)
...++++++.|+. ++ .+..||..+.++..+..+.........+.+ ++..++.||.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456788888883 12 166788877776554433322222222222 56677777754 2456
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++|... ..+..+..+......-..+. .++.+++.|+.+ ..+.++|+... .|..+..+......|
T Consensus 131 ~yd~~~-~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~---- 200 (318)
T 2woz_A 131 CYDPVA-AKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAPMKTPRSMF---- 200 (318)
T ss_dssp EEETTT-TEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT---EEEEECCCSSCCBSC----
T ss_pred EEeCCC-CCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC---EEEECCCCCCCcccc----
Confidence 666543 23333222221111111111 345566666542 35777776543 354443322111122
Q ss_pred EEEEEccCCCEEEEeeCCC-----cEEEEeCCc
Q 023500 147 WALSFNAKGDKLVSCSDDL-----TIKIWGADI 174 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~-----~i~~w~~~~ 174 (281)
.++. -++..++.|+.++ .+.+||.+.
T Consensus 201 ~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 201 GVAI--HKGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEE--ETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred eEEE--ECCEEEEEcCcCCCCccceEEEEECCC
Confidence 1222 2456666665432 345666653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=85.43 E-value=13 Score=29.98 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCcEEEEec--CCCceeeeeee--c-CCC-CCeeEEEE--cCC-CC-EEEEecCCCcEEEEEecCC----CeeEEeEeec
Q 023500 24 DATTCIWED--VGGDYECVATL--E-GHE-NEVKSVSW--NAS-GT-LLATCGRDKSVWIWEVMPG----NEFECVSVLQ 89 (281)
Q Consensus 24 d~~i~lw~~--~~~~~~~~~~~--~-~h~-~~v~~v~~--~~~-~~-~l~s~~~d~~v~~w~~~~~----~~~~~~~~~~ 89 (281)
++.|++|+. .++....+... . +.. ..+..+++ +|. +. +++....++.+..|++... ...+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 678999954 44433222111 0 011 45666777 774 44 5777888899999998532 1223344443
Q ss_pred CCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE--ccCCC-E-EEEeeCCC
Q 023500 90 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGD-K-LVSCSDDL 165 (281)
Q Consensus 90 ~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~-~-l~s~~~d~ 165 (281)
- .+.+..+...+....|+.+-++.-|..++.+-......+.+..+. ...-...+-.|++ .++++ + ++++-.+.
T Consensus 178 l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 178 M-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp C-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred C-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 3 346778888888889999888866544443221111112222221 1111234666666 45555 4 44444677
Q ss_pred cEEEEeCC
Q 023500 166 TIKIWGAD 173 (281)
Q Consensus 166 ~i~~w~~~ 173 (281)
++.+||.+
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 89999874
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=22 Score=31.61 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=43.7
Q ss_pred CCCCEEEEeeCCC--cEEEEecCCCceeeeee---ecCCCCCeeEEEEcCC-CCEEEEecC--C-----CcEEEEEecCC
Q 023500 13 PSGKLLATASFDA--TTCIWEDVGGDYECVAT---LEGHENEVKSVSWNAS-GTLLATCGR--D-----KSVWIWEVMPG 79 (281)
Q Consensus 13 ~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~---~~~h~~~v~~v~~~~~-~~~l~s~~~--d-----~~v~~w~~~~~ 79 (281)
.++++++.||.++ .+.+||..+..+..+.. +........++.+..+ +..++.||. + ..+..||+...
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 4788999998765 68899988887765543 1112222234555655 667777775 2 35778888655
Q ss_pred C
Q 023500 80 N 80 (281)
Q Consensus 80 ~ 80 (281)
.
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=83.61 E-value=24 Score=31.45 Aligned_cols=153 Identities=11% Similarity=0.097 Sum_probs=78.1
Q ss_pred CCCCEEEEeeCC----CcEEEEecCCCceeeee-e-----ecCCCCCeeEEEEcCCCCEEEEecCCC------cEEEEEe
Q 023500 13 PSGKLLATASFD----ATTCIWEDVGGDYECVA-T-----LEGHENEVKSVSWNASGTLLATCGRDK------SVWIWEV 76 (281)
Q Consensus 13 ~~~~~l~tg~~d----~~i~lw~~~~~~~~~~~-~-----~~~h~~~v~~v~~~~~~~~l~s~~~d~------~v~~w~~ 76 (281)
.++.+++.||.+ +.+.+||..++.+..+. . +......-.++.+..++..++.||.++ .+.++|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467788888854 45788888887766554 2 111111222333322677777877543 4667776
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCC--eEEEEeCCCCCCCCceeeee---eeeccCCccccEEEEEE
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN--TIKVWWAEDTDSDNWHCVQT---ISESNNGHSSTIWALSF 151 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~--~v~~w~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~ 151 (281)
... .+..+..+...... .++..-.++.+++.|+.++ .+.+||.... .|..+.. ......+| .++.+
T Consensus 476 ~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~----~a~v~ 546 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE---IFKDVTPKDEFFQNSLVS----AGLEF 546 (695)
T ss_dssp TTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT---EEEECCCSSGGGGSCCBS----CEEEE
T ss_pred CCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC---ceEEccCCCCCCCcccce----eEEEE
Confidence 532 33332222211111 1222223677788877665 6778876543 3544332 11111122 23444
Q ss_pred ccC-CCEEEEeeC--C-----CcEEEEeCCc
Q 023500 152 NAK-GDKLVSCSD--D-----LTIKIWGADI 174 (281)
Q Consensus 152 ~~~-~~~l~s~~~--d-----~~i~~w~~~~ 174 (281)
... +..++.|+. + ..+..||...
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 544 556666664 2 3466777654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.53 E-value=18 Score=28.69 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=32.3
Q ss_pred CCCEEEEeeC-C---------CcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCC
Q 023500 14 SGKLLATASF-D---------ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRD 68 (281)
Q Consensus 14 ~~~~l~tg~~-d---------~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d 68 (281)
++++++.|+. + +.+.+||..+.++..+..+. .......++. .+++.++.||.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5778888876 2 45888998888776555443 1111222222 567777888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d2p4oa1 | 302 | b.68.6.3 (A:4-305) Hypothetical protein All0351 ho | 6e-04 | |
| d1vfsa2 | 237 | c.1.6.1 (A:13-249) Alanine racemase {Streptomyces | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.2 bits (222), Expect = 1e-21
Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 19/280 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V + P ++ +AS DAT +W+ G + TL+GH + V+ +S++ SG
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGK- 72
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ ++ FEC+ + GH +V V P D + S S D TIK+W
Sbjct: 73 --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+CV+T GH + + N G + SCS+D T+++W + +
Sbjct: 131 -----QTGYCVKTF----TGHREWVRMVRPNQDGTLIASCSNDQTVRVW--VVATKECKA 179
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK--ML 239
RH+ + + +S G + S+D I M
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
L HD V V + G + + S +DD +++W+ N
Sbjct: 240 LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN 278
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 9e-19
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 34/189 (17%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN----- 56
H VR + G L+A+ S D T +W EC A L H + V+ +SW
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVV--ATKECKAELREHRHVVECISWAPESSY 199
Query: 57 ---------------ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 101
G L + RDK++ +W+V + C+ L GH V+ V +H
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFH 256
Query: 102 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161
+ SC+ D T++VW D N C++T+ N H + +L F+ +V+
Sbjct: 257 SGGKFILSCADDKTLRVW-----DYKNKRCMKTL----NAHEHFVTSLDFHKTAPYVVTG 307
Query: 162 SDDLTIKIW 170
S D T+K+W
Sbjct: 308 SVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.5 bits (145), Expect = 3e-11
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H VR + GK + + + D T +W+ C+ TL HE+ V S+ ++ +
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 62 LATCGRDKSVWIWE 75
+ T D++V +WE
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.9 bits (221), Expect = 4e-21
Identities = 60/337 (17%), Positives = 111/337 (32%), Gaps = 73/337 (21%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIW----------------EDVGGDYECVATLEG 45
HT V +S G+ LAT + TT ++ + + ++
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ------ 99
+ ++SV ++ G LAT D+ + IW++ + + +
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 100 ---------------------------------WHPTMDVLFSCSYDNTIKVWWAEDTDS 126
+ + S D ++VW +E
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE--TG 237
Query: 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 186
+ + +ES GH +++++ F G +VS S D ++K+W +S +
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297
Query: 187 RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245
H + SV ++ I SG+ D V F+ D G L +
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSG----NPLLMLQG 348
Query: 246 HDMDVNSVQWSPG-----ERRLLASASDDGMIKIWEL 277
H V SV + G E + A+ S D +IW+
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 8e-11
Identities = 46/296 (15%), Positives = 90/296 (30%), Gaps = 60/296 (20%)
Query: 36 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM---------------PGN 80
D E +L+ H + V V ++ G LAT G +K+ ++ V
Sbjct: 52 DVELHKSLD-HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDP 109
Query: 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 140
E S ++ V + P L + + D I++W E+ +
Sbjct: 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
Query: 141 GH---------------------------------SSTIWALSFNAKGDKLVSCSDDLTI 167
+ G + + S D +
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229
Query: 168 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 226
++W ++G H +++SV ++R+G + SG+ D SV+ +
Sbjct: 230 RVW-----DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284
Query: 227 KDDLI---DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ P+ H V SV + + + S S D + W+ +
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKS 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 5e-10
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV------S 54
H V S A + + + + + S D W+ G + L+GH N V SV S
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLMLQGHRNSVISVAVANGSS 363
Query: 55 WNASGTLLATCGRDKSVWIWEV 76
+ AT D IW+
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 89.0 bits (219), Expect = 4e-21
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT V S + +P +L + + DA+ +W+ G C T GHE+++ ++ + +G
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGN 239
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
AT D + ++++ E S + V + + +L + D VW
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICG-ITSVSFSKSGRLLLAGYDDFNCNVW- 297
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D+ ++ GH + + L G + + S D +KIW
Sbjct: 298 ----DALKADRAGVLA----GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.4 bits (207), Expect = 2e-19
Identities = 60/317 (18%), Positives = 102/317 (32%), Gaps = 74/317 (23%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + W +LL +AS D IW+ V + + V + ++ SG
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 62 LATCGRDKSVWIWEV------------------------------------------MPG 79
+A G D I+ +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 139
+ + GH DV + P + S + D + K+W D C QT
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-----DVREGMCRQTF---- 222
Query: 140 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 199
GH S I A+ F G+ + SDD T +++ D A +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLF----------DLRADQELMTYSHDNIICG 272
Query: 200 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258
I SV +S+ G ++ +G D + + D + HD V+ + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVW-----DALKAD----RAGVLAGHDNRVSCLGVTD- 322
Query: 259 ERRLLASASDDGMIKIW 275
+ +A+ S D +KIW
Sbjct: 323 DGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.4 bits (155), Expect = 2e-12
Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 60/279 (21%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
TL GH ++ ++ W LL + +D + IW+ N V + + V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMT 102
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAED---------------------------------- 123
+ P+ + + DN ++ +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 124 --TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
T + + + GH+ + +LS VS + D + K+W
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-------- 214
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
T +G H+ I ++ + G A+G+ D + + F D + S+
Sbjct: 215 ---EGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-- 268
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ SV +S RLL + DD +W+
Sbjct: 269 -----IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK 301
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.6 bits (101), Expect = 1e-05
Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 17/211 (8%)
Query: 81 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED-----TDSDNWHCVQTI 135
+ L+GH + + W +L S S D + +W + V T
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 136 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY 195
+ + +G+ L L + ++ + A T S + + T SG
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 196 HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM-----------LLKKEK 244
++ + ++ +G D + + L + +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
H+ D+N++ + P A+ SDD +++
Sbjct: 224 GHESDINAICFFP-NGNAFATGSDDATCRLF 253
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.0 bits (190), Expect = 5e-17
Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 8/271 (2%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+ AW+ +A + I+E G + V L+ H +V V W + TC
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
G D++ ++W + ++ V+ + + V+W P S I + + E +
Sbjct: 70 GTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS 185
ST+ +L ++ L + S D +I+ + + A
Sbjct: 129 DWWVCKHI-----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF--SAYIKEVEERPAP 181
Query: 186 WRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245
+ S + A V + + KM + +
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
+ + +V + + A ++ ++
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYD 272
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.1 bits (167), Expect = 5e-14
Identities = 44/311 (14%), Positives = 96/311 (30%), Gaps = 33/311 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V W+P + T D +W G ++ + + V W +
Sbjct: 50 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109
Query: 62 LATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
A + + I N+ + C + + V + WHP +L + S D +++
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169
Query: 121 AEDTDSD---------NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
A + + + + ++ + + F+A G ++ S D T+ +
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229
Query: 172 ADITRMQSGDGYASWRHLCT---------ISGYHDRTIFSVHWSREGIIASGAADDSVQF 222
AD + + L +G+ + + S G ++ G D +
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 289
Query: 223 FVESKDD-----------LIDGPSYKMLLKKEKAHDMDVNSVQWSPGER---RLLASASD 268
+ S + H V+ + G + +
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349
Query: 269 DGMIKIWELAN 279
DG + IW++ +
Sbjct: 350 DGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.4 bits (147), Expect = 2e-11
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 7/232 (3%)
Query: 46 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD 105
+ +WN T +A C + V I+E GN++ V L+ H V V W P +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSN 64
Query: 106 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165
+ +C D VW T+ ++ + N K + S S +
Sbjct: 65 RIVTCGTDRNAYVW-----TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE 225
+I + + R +H ++ S + +A
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + L+ + + V+ V +S R +A S D + + +
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADA 230
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 3e-08
Identities = 10/121 (8%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 89 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148
+ + W+ + C ++ + ++ + + W V + H+ +
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIY---EKSGNKWVQVHELK----EHNGQVTG 56
Query: 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE 208
+ + +++V+C D +W + + S
Sbjct: 57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116
Query: 209 G 209
Sbjct: 117 R 117
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 3e-15
Identities = 28/298 (9%), Positives = 72/298 (24%), Gaps = 34/298 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNAS 58
H V + S + + T +W+ + +N ++S
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118
G L G ++ IW++ + + + CS N
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR-- 176
T + + + + + + ++
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228
Query: 177 ----------------MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 219
+ + + H+ + S+ ++ G S D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288
Query: 220 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + P + + V S S + + + + S D ++E+
Sbjct: 289 LNAW--------RTPYGASI--FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 5e-10
Identities = 34/294 (11%), Positives = 71/294 (24%), Gaps = 19/294 (6%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
M ++ S + G++ F I + + TL H V +V+ +
Sbjct: 7 MGSKPAYSFHVTADGQMQPVP-FPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR 64
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQWHPTMDVLFSCSYDN--TI 116
+ T G V +W++ VS L ++ + P L + +I
Sbjct: 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
A + S + +
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183
Query: 177 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD------- 229
+ S +G D T+ S + +
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243
Query: 230 ----LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ K + H+ V S++++ + S D ++ W
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY 296
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 1e-09
Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT S G L T D T W+ +++ S+ + +G
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGE 237
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
LA +V + V ++++ H V +++ S DN + W
Sbjct: 238 WLAVGMESSNVEVLHVNKPDKYQL----HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW- 292
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ + SS++ + + +V+ S D ++
Sbjct: 293 ----RTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 3e-09
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+H V S ++ GK + D W G + + V S +
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQS-KESSSVLSCDISVDDK 319
Query: 61 LLATCGRDKSVWIWEVM 77
+ T DK ++EV+
Sbjct: 320 YIVTGSGDKKATVYEVI 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 6e-13
Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 28/259 (10%)
Query: 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQDVKM 97
+ H+ ++ SVS + +C D + +W+ NE +
Sbjct: 6 TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 98 ---------VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIW 147
+ + ++ + S+ + + D + + ++ + W
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123
Query: 148 ALSFNAKGD-----KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG------YH 196
AL + A D +LV+ T IW +S +W + G
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183
Query: 197 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256
+ SV S G+IA+G + +VQ S + + + + SV++S
Sbjct: 184 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH---SMINNSNSIRSVKFS 240
Query: 257 PGERRLLASASDDGMIKIW 275
P + LLA A D
Sbjct: 241 P-QGSLLAIAHDSNSFGCI 258
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 6e-10
Identities = 44/318 (13%), Positives = 94/318 (29%), Gaps = 50/318 (15%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC----VATLEGHENEVKSVSW-- 55
H + S + + S D +W++ D E + H++ + V
Sbjct: 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 56 -----NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG-------HAQDVKMVQWHP- 102
L+AT + + + +E + V + ++W
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 103 ----TMDVLFSCSYDNTIKVWWAEDT---------DSDNWHCVQTISESNNGHSSTIWAL 149
L + T +W + +Q ES S ++
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209
+ +G + + ++ T++I S + +I SV +S +G
Sbjct: 191 DISERG-LIATGFNNGTVQIS------ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243
Query: 210 IIASGAADDSVQFFVESKDDLIDGPSYKM--------LLKKEKAHDMDVNSVQWSPGERR 261
+ + A D + + + + E AH V S+ ++
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303
Query: 262 LLASASDDGMIKIWELAN 279
L SA DG ++ W++
Sbjct: 304 -LCSAGWDGKLRFWDVKT 320
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 5e-08
Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 9/144 (6%)
Query: 141 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 200
H + I+++S VSCS D +K+W + ++ + + +H +
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 201 FSVHWS--REGIIASGAADDSVQFF-VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP 257
++ ++A+ + + F+ + +D+ K+ L +++W
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 258 GE----RRLLASASDDGMIKIWEL 277
L + G IW+
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKF 153
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 9e-07
Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE----DVGGDYECVATLEGHENEVKSVSWNA 57
++ S S G L+AT + T I E ++E ++ + N ++SV ++
Sbjct: 183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241
Query: 58 SGTLLATCGRDKSVWIWEV-------------MPGNEFECVSVLQGHAQDVKMVQWHPTM 104
G+LLA S + +P + + H+ V + ++ +
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301
Query: 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162
+ L S +D ++ W D + T++ + L+ + GD L
Sbjct: 302 ETLCSAGWDGKLRFW-----DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 8e-05
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK----SVSWN 56
H+ V S +++ SG+ L +A +D W+ E + TL H ++++ ++ +
Sbjct: 287 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVD 344
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
G LA G ++ + + + L D +I
Sbjct: 345 EHGDSLAEPGVFDVKFLK------------------KGWRSGMGADLNESLCCVCLDRSI 386
Query: 117 KVW 119
+ +
Sbjct: 387 RWF 389
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 2e-12
Identities = 36/281 (12%), Positives = 86/281 (30%), Gaps = 11/281 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGT 60
+ PS LL S+D + +++ D+ + +++ + ++ +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
L G + + + G+ + + + +
Sbjct: 70 LQIYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D + + + ++N + + +L+ ++ ++ + + +G
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 181 DGYASWRHLCTI--SGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 238
S + S +G +A DD + SK
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR---CHR 242
Query: 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
L K+ VNS+++SP + L +A DG+I W L
Sbjct: 243 LNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 5e-06
Identities = 19/161 (11%), Positives = 44/161 (27%), Gaps = 10/161 (6%)
Query: 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM 77
L D T + VA L + S + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE 137
A V +++ P L++ D I W + ++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW-----NLQTRKKIKNFA- 290
Query: 138 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 178
+ ++ ++ + + L + D T K A ++
Sbjct: 291 --KFNEDSVVKIACS--DNILCLATSDDTFKTNAAIDQTIE 327
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (153), Expect = 2e-12
Identities = 45/287 (15%), Positives = 81/287 (28%), Gaps = 33/287 (11%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 69
+ + + D T IW+ EC L GH V + ++
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYD-------ERVIIT 70
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129
V + + ++ ++ +CS D +I VW
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189
V + +A GD+ + + T + + + G +R
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR-TLNGHKRGIACLQYRDR 189
Query: 190 CTISGYHDRTI--------------------FSVHWSREGIIASGAADDSVQFFVESKDD 229
+SG D TI I SGA D ++ +
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276
P+ + L+ H V +Q+ + S+S D I IW+
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (135), Expect = 5e-10
Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 11/170 (6%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ K + +AS D T +W E V TL GH+ + + +
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC--EFVRTLNGHKRGIACLQY--RDR 189
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
L+ + D ++ +W++ + + + + S +YD IKVW
Sbjct: 190 LVVSGSSDNTIRLWDIE-----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 244
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
+ HS ++ L F+ ++VS S D TI IW
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 1e-11
Identities = 55/302 (18%), Positives = 104/302 (34%), Gaps = 51/302 (16%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V +C G + + S D T +W V G +C+ TL GH V S + +
Sbjct: 15 HDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDNIII 71
Query: 62 LATCGRDKSVWIWE------------------------VMPGNEFECVSVLQGHAQDVKM 97
+ R VW E V+ G+ + V
Sbjct: 72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
V V + + +T + GH++ +++L F+ G
Sbjct: 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 189
Query: 158 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAAD 217
+VS S D +I++W + C + +++ S ++ I+ SG AD
Sbjct: 190 VVSGSLDTSIRVWDVETGN-------------CIHTLTGHQSLTSGMELKDNILVSGNAD 236
Query: 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+V+ + L+ + + ++V + + ++SDDG +K+W+L
Sbjct: 237 STVKIW---------DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 278 AN 279
Sbjct: 288 KT 289
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 4e-10
Identities = 32/257 (12%), Positives = 74/257 (28%), Gaps = 30/257 (11%)
Query: 35 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94
G+ + L+GH++ V + G + + D ++ +W + G +C+ L GH
Sbjct: 4 GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGG 59
Query: 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL----- 149
V Q + + S + + + T+ + +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 150 -----SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA---SWRHLCTISGYHDRTIF 201
L+ + + + D + T
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 202 SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 260
+G + SG+ D S++ + + H + ++
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVW---------DVETGNCIHTLTGHQSLTSGMELKD--- 227
Query: 261 RLLASASDDGMIKIWEL 277
+L S + D +KIW++
Sbjct: 228 NILVSGNADSTVKIWDI 244
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 5e-08
Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 25/229 (10%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ G+ + + ++D +W+ C+ TL+GH N V S+ ++ G
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQFD--GI 188
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+ + D S+ +W+V C+ L GH ++ ++L S + D+T+K+W
Sbjct: 189 HVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWD 243
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
+ N H S + L FN + +++ SDD T+K+W +++G
Sbjct: 244 I------KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW-----DLKTG 290
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD 228
+ + L SG ++ + S + A G+ + + + + D
Sbjct: 291 EFIRNLVTL--ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 7e-08
Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 39/281 (13%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
++ T K + + S DAT +W+ G V + G
Sbjct: 93 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAVRCVQYDGR 148
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+ + D V +W+ C+ LQGH V +Q+ + S S D +I+VW
Sbjct: 149 RVVSGAYDFMVKVWDP---ETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVW- 202
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
D + +C+ T GH S + + LVS + D T+KIW
Sbjct: 203 ----DVETGNCIHT----LTGHQSLTSGMELK--DNILVSGNADSTVKIW---------- 242
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
D ++ + + + + + D +V+ + + I ++
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI----RNLVT 298
Query: 241 KKEKAHDMDVNSVQWSPGERRLLASASDDG----MIKIWEL 277
+ V ++ S + + A S +G + + +
Sbjct: 299 LESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDF 338
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.8 bits (145), Expect = 2e-11
Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 17/290 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + + + S GK L +A + W D+ + H + + + G L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSW-DISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
D + G + + +Q + + + +C I
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 122 E---------DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
+ + + + K + ++T +
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189
Query: 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI- 231
+ + + D + + S + + + D+V+ S D+ +
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 232 ----DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ PS ++ K VNSV W + SA D IK W +
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 1e-06
Identities = 28/255 (10%), Positives = 63/255 (24%), Gaps = 15/255 (5%)
Query: 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 97
GH + ++S +A G L + + + W++ G HA +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITG 60
Query: 98 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157
++ D+ D+ V + +S G + + A K
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 158 LVSCSDDLTIKIWGAD-------------ITRMQSGDGYASWRHLCTISGYHDRTIFSVH 204
++ + + D L S +TI
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 205 WSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264
++ A ++++ + + LA
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 265 SASDDGMIKIWELAN 279
+ S D + +W +
Sbjct: 241 TGSLDNSVIVWNMNK 255
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.3 bits (84), Expect = 0.001
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
HT V +WSP LAT S D + +W + H + + T
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281
Query: 61 LLATCGRDKSVWIWEV 76
+ + G+D ++ W V
Sbjct: 282 TIVSAGQDSNIKFWNV 297
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.6 bits (145), Expect = 4e-11
Identities = 13/279 (4%), Positives = 46/279 (16%), Gaps = 15/279 (5%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
+R K+ + + E N V
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN----VFAMGVDRN 96
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ + + + + + + +
Sbjct: 97 GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ + +S +A +F+A L S +
Sbjct: 157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR-----VVLN 211
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
+ + ++ + +
Sbjct: 212 FSFEVVSKPFVIPLIPGSPNPTKLVPRS----MTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 242 KEKAHDMDVNSVQWSPG--ERRLLASASDDGMIKIWELA 278
+ + A + G++ +++
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.1 bits (128), Expect = 5e-09
Identities = 13/181 (7%), Positives = 38/181 (20%), Gaps = 22/181 (12%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSWN 56
+ A+ K L S+ + + V ++ +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 57 ASGTLLATCGRDKSV----WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
D + + ++ + L+ +
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
+ + D + + + L +A ++ DD I +
Sbjct: 297 KGVLLKY---DVKTRKVT----------EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
Query: 173 D 173
+
Sbjct: 344 E 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 5e-06
Identities = 5/86 (5%), Positives = 18/86 (20%), Gaps = 6/86 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
A ++ + +N + + +A
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------KVTEVKNNLTDLRLSADRKT 328
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSV 87
+ D ++ + + + V
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 1e-10
Identities = 37/286 (12%), Positives = 75/286 (26%), Gaps = 25/286 (8%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H + + + +P L + S+D W + H N + S+ + +
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQEY 60
Query: 62 LATCGRDKSVWIWEVMPGNEFEC---------VSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
+ D + + + + D+ ++Q +
Sbjct: 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 120
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 172
V +++ + TI + L + I
Sbjct: 121 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI- 231
D+ S + + I ++ W A+ + S D I
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 232 --DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
++K AH VN++ W L S+ D IK W
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 2e-06
Identities = 27/258 (10%), Positives = 65/258 (25%), Gaps = 25/258 (9%)
Query: 35 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94
G E + T+ GH + +++ N L + D + W S+ Q H+
Sbjct: 1 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS--------SSMHQDHSNL 48
Query: 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 154
+ + + D + ++ + L
Sbjct: 49 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108
Query: 155 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG 214
+ S L +++ G + F + +
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 215 AADDSV-------------QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR 261
+ S + ++S++ +++ + E
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 262 LLASASDDGMIKIWELAN 279
L+A+ S D I I+ +
Sbjct: 229 LVATGSLDTNIFIYSVKR 246
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
+ L+AT S D I+ V + + L H++ V ++ W T
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIY-SVKRPMKIIKALNAHKDGVNNLLWETPST 271
Query: 61 LLATCGRDKSVWIWEVM 77
L + G D + W V+
Sbjct: 272 -LVSSGADACIKRWNVV 287
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.5 bits (137), Expect = 4e-10
Identities = 31/293 (10%), Positives = 79/293 (26%), Gaps = 20/293 (6%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--------DYECVATLEGHENEVKSV 53
+ + + G +A AS + + A +E + V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 54 SWNASGTLLATCGRDKSVWIWE---VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 110
T L G+ + + + + E + + + D F
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164
Query: 111 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 170
D ++ + + I +++ K +LV + I
Sbjct: 165 CRDGSLAKVAFGTEGTPEITHTEVFHP---EDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221
Query: 171 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD- 229
+ + G+ V + R D ++ ++
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281
Query: 230 --LIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279
++D + + L + +++S+ S + L A ++ D + I + +
Sbjct: 282 VVVLDAKTGERL--AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-08
Identities = 29/284 (10%), Positives = 73/284 (25%), Gaps = 28/284 (9%)
Query: 2 HTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECV------ATLEGHENEVKSV 53
+ V + +SP + L + +W + + + +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 54 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 113
SW+ G L G + + + + V + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 114 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173
++ + +++ S + + F+ + V
Sbjct: 182 GSVVFYQ------GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 174 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 233
+ +++ IF++ W A+ AD +++ + D+
Sbjct: 236 KSGEF-------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-----DVTTS 283
Query: 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + V + S S DG + +EL
Sbjct: 284 KCVQKW--TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-06
Identities = 29/284 (10%), Positives = 60/284 (21%), Gaps = 29/284 (10%)
Query: 5 TVRSCAWSPSGKLLATASFDATT-CIWEDVGGDYECVATLEGHE-NEVKSVSW--NASGT 60
++ P+ +A + +D V GH + V +V +
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 61 LLATCGRDKSVWIWEVMPGNEFECV-----SVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 115
L + V +W E V S Q A + + W L
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 116 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
+ ++ V S+ N + S +
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 176 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPS 235
R G +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI--------------------SCFDGKSG 238
Query: 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ ++ + S + + A+ D I++W++
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 3e-05
Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 4/161 (2%)
Query: 48 NEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD- 105
N +S++ + +A G+ V + V + V V++ P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 106 -VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164
L S + VW D ++ + + I +S++ +G +L +
Sbjct: 78 QYLCSGDESGKVIVWGWT-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
S +
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 52.5 bits (124), Expect = 2e-08
Identities = 23/278 (8%), Positives = 58/278 (20%), Gaps = 9/278 (3%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASG 59
V+ SP + L + + D A + +S + G
Sbjct: 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG 94
Query: 60 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119
+ + + V + P L+ +
Sbjct: 95 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL 154
Query: 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179
+ D + G N + V+ + ++ +W
Sbjct: 155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS-SVDVWELKDPHGNI 213
Query: 180 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 239
S + + A + F + +
Sbjct: 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS------VSEDGSVLS 267
Query: 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
+ + + + L+A+ I ++E+
Sbjct: 268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 2e-08
Identities = 40/308 (12%), Positives = 90/308 (29%), Gaps = 36/308 (11%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H +V +C + T + D +++ + + + L GH+ V ++ + G L
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGGIL 67
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+ G + V + + + + + S DNT+ VW
Sbjct: 68 V--SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 122 EDTDS------------DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
S + + + G+ +VS S D T+ +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 170 WGADITRMQS---------GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 220
W + IS D TI ++ + ++
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 221 QFFVESKDDLIDGPSYKMLLKKEKAHDM---------DVNSVQWSPGERRLLASASDDGM 271
+ D + + ++ A+D +++++ +L S S +
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 304
Query: 272 IKIWELAN 279
I+ L +
Sbjct: 305 FNIYNLRS 312
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 5e-07
Identities = 16/165 (9%), Positives = 40/165 (24%), Gaps = 4/165 (2%)
Query: 41 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW 100
TL GH V + + T DK + +++ + + + L GH V +++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKY 61
Query: 101 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160
++ + + + + + + D +
Sbjct: 62 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121
Query: 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
+ + G + SV
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 3e-06
Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H V + ++ G +L + S D T +W+ G V + +
Sbjct: 52 HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 110
Query: 62 LATCGRDKSVWIWEVMPGNE---------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 112
+ T RD ++ +W++ + + V V V +
Sbjct: 111 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 113 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI--- 169
N + ++T +GH+ I++ ++ + + +S S D TI+I
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 170 -------------WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA 216
+ R+ ++ + + + A
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 217 DDSVQFFVESKDDLI---DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273
S V ++ + S K++ + SV + + L+A+ DG
Sbjct: 291 YVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSF 348
Query: 274 IW 275
+
Sbjct: 349 LE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 8e-04
Identities = 10/106 (9%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 70 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 129
+ + + + H ++ + D + +N ++ + +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY-----NLRSG 313
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 175
V + IW+++F K + + D + D +
Sbjct: 314 KLVHANIL---KDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDFS 355
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.5 bits (119), Expect = 6e-08
Identities = 10/283 (3%), Positives = 56/283 (19%), Gaps = 17/283 (6%)
Query: 10 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASG-TLLATCGR 67
A + + ++ + + + + + T
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 68 DKSVWIWEVMPGNEFECVSVLQ---GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124
++ ++ ++ + + P +++
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 125 -------DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 177
+ + + + + + + + +K +
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180
Query: 178 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD-DLIDGPSY 236
+ + + ++ I +D +
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240
Query: 237 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
K ++ + SP + + + + ++L
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR--LAKYDLKQ 281
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 3e-07
Identities = 22/288 (7%), Positives = 58/288 (20%), Gaps = 15/288 (5%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWE----DVGGDYECVATLEGHENEVKSVSWN 56
+ +P + + + + + S + +
Sbjct: 38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Query: 57 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116
G + + V + K V+ P ++ +
Sbjct: 98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAKPVRTFPMPRQVYLMRAADDG 156
Query: 117 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 176
++ A + + + S S +
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 177 MQSGDGYASWRHLCTI------SGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 230
A+ L +G F+ D + + V ++
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAK 276
Query: 231 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278
D K++ K D V + + L + ++
Sbjct: 277 YDLKQRKLI--KAANLDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 16/224 (7%), Positives = 51/224 (22%), Gaps = 16/224 (7%)
Query: 53 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCS 111
+ A + ++ + +V ++ + P + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN 59
Query: 112 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171
+ I D D+ +S ++++ + + G ++ + +
Sbjct: 60 HYGDIYGI---DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 172 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 231
+ + + + + + AADD + +
Sbjct: 117 YVVKPP--------RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168
Query: 232 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275
D + K +P S +
Sbjct: 169 DVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.4 bits (119), Expect = 8e-08
Identities = 26/331 (7%), Positives = 75/331 (22%), Gaps = 55/331 (16%)
Query: 2 HTRTVRSCAWSPSGK---LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--- 55
+ + + A F TT W G + G +
Sbjct: 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGS 77
Query: 56 -----NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK----MVQWHPTMDV 106
+ S A R V +++ + + + V ++ +
Sbjct: 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137
Query: 107 LFSCSY-DNTIKVWWAE------------------------------------DTDSDNW 129
L + + D +
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197
Query: 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 189
++ + + A N G + + + + A M++
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257
Query: 190 CTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD 249
+ + + +GI+ + + ++ D
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS--GPISNGHD 315
Query: 250 VNSVQWSP-GERRLLASASDDGMIKIWELAN 279
+++ + G A+++ ++ I++ A+
Sbjct: 316 SDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 42/285 (14%), Positives = 85/285 (29%), Gaps = 18/285 (6%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGT-L 61
V S SG+ L DA + + + VA ++ + S
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWW 120
+A I + G E ++ V +HP V S+++ +
Sbjct: 124 IAGAYWPPQFAIMD---GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 180
++T + I +N ++I A F A G S +T + + S
Sbjct: 181 VKETGKVLLVNYKDI---DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 181 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 240
D S + + R VH + ++ D + + ++K +
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KV 296
Query: 241 KKEKAHDMDVNSVQWSPGERRLLA------SASDDGMIKIWELAN 279
+ + ++ P L A + +++L N
Sbjct: 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.7 bits (114), Expect = 3e-07
Identities = 32/276 (11%), Positives = 71/276 (25%), Gaps = 22/276 (7%)
Query: 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 61
H+ SPSG A+ IW+ + T+ VK +SW++
Sbjct: 57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121
+A G + + + ++ + + S S DNT+ ++
Sbjct: 117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176
Query: 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 181
+ T + ++ +
Sbjct: 177 PPFKFKSTFGEHTKFVHSVRYNPDGS-------------LFASTGGDGTIVLYNGVDGTK 223
Query: 182 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 241
+ IAS +AD +++ + + + K+
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW--------NVATLKVEKT 275
Query: 242 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277
++ + ++ L S S +G I
Sbjct: 276 IPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 4e-06
Identities = 30/275 (10%), Positives = 62/275 (22%), Gaps = 24/275 (8%)
Query: 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 64
T +P+G + + + H ++ + SG A+
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 65 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 124
+V IW+ ++ + VK + W + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134
Query: 125 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 184
+ + + + N S + + + +
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPS--------RPFRIISGSDDNTVAIFEGPPFKFKSTFG 186
Query: 185 SWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244
Y+ +G I D + V +
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV------------FEDDSLKN 234
Query: 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
+ +ASAS D IKIW +A
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.2 bits (97), Expect = 4e-05
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS 136
G + H+ V + W P + S S D TIK+W + +TI
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW-----NVATLKVEKTI- 276
Query: 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 173
G L LVS S + I +
Sbjct: 277 --PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.001
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN-EVKSVSWNASG 59
H+ +V WSP G +A+AS D T IW + T+ E + + +
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL--KVEKTIPVGTRIEDQQLGIIWTK 293
Query: 60 TLLATCGRDKSVWIWE 75
L + + +
Sbjct: 294 QALVSISANGFINFVN 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 30/290 (10%), Positives = 60/290 (20%), Gaps = 23/290 (7%)
Query: 2 HTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGG---DYECVATLEGHENEVKSVSWNA 57
T +P G+ AT + + + V G ++T E + + +
Sbjct: 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP 91
Query: 58 SGTLLATCGRDKSVWIWEVMPGNEFEC--------VSVLQGHAQDVKMVQWHPTMDVLFS 109
G LA + + + + M+ W L+
Sbjct: 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151
Query: 110 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 169
D + V+ + + S
Sbjct: 152 LGRDLHVMDPE-------AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204
Query: 170 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 229
DI + +G + A A F + +
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA-FGAYNVLE 263
Query: 230 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D + K SV S + G + ++
Sbjct: 264 SFDLEKNASI--KRVPLPHSYYSVNVSTDGST-VWLGGALGDLAAYDAET 310
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 1e-04
Identities = 10/151 (6%), Positives = 30/151 (19%), Gaps = 12/151 (7%)
Query: 1 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 60
++ + G+ + + S + N + T
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-VRIMDVFYFSTAVNPAKT 253
Query: 61 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 120
+ +++ + V V ++ + +
Sbjct: 254 RAFGA--YNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAY- 306
Query: 121 AEDTDSDNWHCVQTISESNNGHSSTIWALSF 151
D++ + N S F
Sbjct: 307 ----DAETLEKKGQVDLPGNASMSLASVRLF 333
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 43/306 (14%), Positives = 80/306 (26%), Gaps = 42/306 (13%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL---EGHENEVKSVSWNASG-TL 61
V S SG+ L D + + + VA + + S
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 62 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWW 120
+A I + G E + ++HP V S+ +
Sbjct: 124 IAGAYWPPQYVIMD---GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180
Query: 121 AEDT------DSDNWHCVQTISESN-------NGHSSTIWALSFNAKGDKLVSCSDDLTI 167
++T D + + ++T S S + ++ +KLV
Sbjct: 181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240
Query: 168 KIW-------------GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS 213
+ GA+ G +A+ H+ S T H I+ S
Sbjct: 241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATS-HMGDDSVALIGTDPEGHPDNAWKILDS 299
Query: 214 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 273
A F+++ + Y + SV + + D K
Sbjct: 300 FPALGGGSLFIKTHPNSQ----YLYVDATLNPEAEISGSVAVFDIKA--MTGDGSDPEFK 353
Query: 274 IWELAN 279
+A
Sbjct: 354 TLPIAE 359
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.1 bits (89), Expect = 4e-04
Identities = 23/272 (8%), Positives = 54/272 (19%), Gaps = 15/272 (5%)
Query: 20 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMP 78
S + + + AT+ N + GT + V I +
Sbjct: 7 ANSESDNISVIDVTSN--KVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISE 137
N V + S + I ++
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 138 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 197
S +G + + G + S
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 198 RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML----------LKKEKAHD 247
+ + + A +K + + Y +
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 248 MDVNSVQWSPGERRLLASASDDGMIKIWELAN 279
D + +P +++ + S + + + A
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Score = 38.1 bits (87), Expect = 6e-04
Identities = 22/204 (10%), Positives = 58/204 (28%), Gaps = 9/204 (4%)
Query: 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 65
+ + A +P G + T G+ + AT+EG + +++ ++G L+AT
Sbjct: 30 LENLASAPDGTIFVTNHEVGEIVSI-TPDGNQQIHATVEGKVS---GLAFTSNGDLVATG 85
Query: 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 125
S+ + ++ + + A + + +
Sbjct: 86 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP 144
Query: 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS 185
S + + +N S A G+ L + + + +
Sbjct: 145 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEI 203
Query: 186 WRHLCTISGY---HDRTIFSVHWS 206
+ I + + ++
Sbjct: 204 FVEQTNIDDFAFDVEGNLYGATHI 227
|
| >d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLP-binding barrel family: Alanine racemase-like, N-terminal domain domain: Alanine racemase species: Streptomyces lavendulae [TaxId: 1914]
Score = 35.7 bits (81), Expect = 0.003
Identities = 22/191 (11%), Positives = 42/191 (21%), Gaps = 11/191 (5%)
Query: 35 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94
G C + + L G + W PG + ++
Sbjct: 33 GAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIMCWLWTPGGPWREA--IETDIDV 90
Query: 95 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDT---------DSDNWHCVQTISESNNGHSST 145
W + + T ++ DT ++ G
Sbjct: 91 SVSGMWALDEVRAAARAAGRTARIQLKADTGLGRNGCQPADWAELVGAAVAAQAEGTVQV 150
Query: 146 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205
S A D+ S L + + + + RH+
Sbjct: 151 TGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL 210
Query: 206 SREGIIASGAA 216
R G+ G +
Sbjct: 211 VRTGLAVYGVS 221
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.74 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.61 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.44 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.4 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.34 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.3 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.27 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.17 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.16 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.03 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.91 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.75 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.73 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.62 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.53 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.47 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.42 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.3 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.23 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.06 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.03 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.79 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.51 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.94 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.48 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.86 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.65 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 91.0 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 86.71 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 85.91 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 84.36 |
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6e-39 Score=265.01 Aligned_cols=259 Identities=18% Similarity=0.302 Sum_probs=203.2
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
.++|+|++|+|+|++||+|+.|+.|+||+..+++..++..+++|.++|++++|+|++++|++||.|++|++||+.... .
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-~ 85 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-W 85 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-E
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc-c
Confidence 488999999999999999999999999999888877888999999999999999999999999999999999997543 3
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 162 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 162 (281)
.+...+.+|...|.+++|+|+++.+++++.|+++++|+++.... .........+|...|.+++|+|++++|++|+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccc-----cccccccccccccccccccccccccceeccc
Confidence 44566778899999999999999999999999999998765432 1112223357889999999999999999999
Q ss_pred CCCcEEEEeCCccccccCCCCc------ccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcc
Q 023500 163 DDLTIKIWGADITRMQSGDGYA------SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 163 ~d~~i~~w~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
.|+++++|+............. ...........|...+.+++|+|++ .+++++.|+.+++|+....
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~------- 233 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------- 233 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-------
T ss_pred cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-------
Confidence 9999999987543221111000 0011112223467789999999975 6788899999999977542
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+.....|..+|++++|+|++ .+|++|+ |+.+++|...
T Consensus 234 --~~~~~~~~~~~~v~s~~fs~d~-~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 234 --MAVATLASETLPLLAVTFITES-SLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp --TEEEEEECSSCCEEEEEEEETT-EEEEEET-TSSCEEEEEE
T ss_pred --cceeeeecccccceeeeecCCC-CEEEEEc-CCceEEEEee
Confidence 1233445788899999999987 4666555 7777777653
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8e-37 Score=247.64 Aligned_cols=243 Identities=24% Similarity=0.369 Sum_probs=194.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|++++|+|++++||||+.||.|+|||..+++ .+..+.+|...|.+++|+|++.++++|+.|+.+++|+......
T Consensus 54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCCCEEEEEECCCCCEEEEEECCCceeeeecccce--eEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence 88999999999999999999999999999988764 4678889999999999999999999999999999999653221
Q ss_pred e-EE-----------------------------------------eEeecCCccceeEEEecCCCCeEEEEecCCeEEEE
Q 023500 82 F-EC-----------------------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 119 (281)
Q Consensus 82 ~-~~-----------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w 119 (281)
. .. ......+...+....+.|...++++++.|+.|++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~ 211 (340)
T d1tbga_ 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence 0 00 00112344566777888889999999999999999
Q ss_pred eCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEe-ecccCc
Q 023500 120 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI-SGYHDR 198 (281)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 198 (281)
++... +++..+ .+|...|++++|+|++.+|++|+.|+.+++|+...... .... ...+..
T Consensus 212 d~~~~-----~~~~~~----~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-----------~~~~~~~~~~~ 271 (340)
T d1tbga_ 212 DVREG-----MCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----------LMTYSHDNIIC 271 (340)
T ss_dssp ETTTT-----EEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEECCTTCCS
T ss_pred ECCCC-----cEEEEE----eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc-----------ccccccccccC
Confidence 87654 233333 37889999999999999999999999999999864321 1111 123556
Q ss_pred ceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 199 TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 199 ~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+.++.|++++ ++++++.|+.+++|+.... .......+|..+|++++|+|+++ +|+||+.||.|+|||
T Consensus 272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred ceEEEEECCCCCEEEEEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEccCCEEEEeC
Confidence 78999999876 6888899999999976542 23344568999999999999876 578999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-37 Score=249.23 Aligned_cols=251 Identities=20% Similarity=0.308 Sum_probs=190.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC--CCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~~w~~~~~ 79 (281)
|...|++++|+|+|++||+|+.||.|+|||..+........+.+|.+.|.+++|+|++++|++++. ++.+++|++...
T Consensus 57 H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~ 136 (311)
T d1nr0a1 57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136 (311)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999877765555678899999999999999999998876 456999998765
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
. ....+.+|...|++++|+|++.+ +++|+.|+.|++|+++... ... ...+|...|+++.|+|++++|
T Consensus 137 ~---~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~----~~~~~~~~i~~v~~~p~~~~l 204 (311)
T d1nr0a1 137 T---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKS----TFGEHTKFVHSVRYNPDGSLF 204 (311)
T ss_dssp C---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEE----EECCCSSCEEEEEECTTSSEE
T ss_pred c---ccccccccccccccccccccceeeecccccccccccccccccc-----ccc----ccccccccccccccCcccccc
Confidence 4 34567889999999999999885 8899999999999876532 222 224688999999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++++.|+.+++||.............. .....|...|.+++|++++ ++++++.|+.+++|+.... ....
T Consensus 205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~-----~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-----~~~~ 274 (311)
T d1nr0a1 205 ASTGGDGTIVLYNGVDGTKTGVFEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-----KVEK 274 (311)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTT-----SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----EEEE
T ss_pred ccccccccccccccccccccccccccc-----cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-----cEEE
Confidence 999999999999976433211100000 0012367889999999865 6888899999999976542 1111
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. +.....+...+.++.|++ . .+++++.||.|++||+.
T Consensus 275 ~-l~~~~~~~~~~~~~~~~~--~-~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 275 T-IPVGTRIEDQQLGIIWTK--Q-ALVSISANGFINFVNPE 311 (311)
T ss_dssp E-EECCSSGGGCEEEEEECS--S-CEEEEETTCCEEEEETT
T ss_pred E-EECCCCccceEEEEEecC--C-EEEEEECCCEEEEEeCC
Confidence 1 111112223445566654 3 46788899999999963
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8e-37 Score=252.19 Aligned_cols=266 Identities=17% Similarity=0.287 Sum_probs=201.8
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|++++|++|+.|+.|+|||..++...+...+.+|...|.+++|+|+++.|++++.|+++++|++.....
T Consensus 50 H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~ 129 (371)
T d1k8kc_ 50 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129 (371)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred CCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc
Confidence 88999999999999999999999999999998877766777788999999999999999999999999999999876543
Q ss_pred e-EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCce---------eeeeeeeccCCccccEEEEEE
Q 023500 82 F-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH---------CVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 82 ~-~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~ 151 (281)
. ........|...|.+++|+|++.++++|+.|++|++|+.......... ..........+|...|.+++|
T Consensus 130 ~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 209 (371)
T d1k8kc_ 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 209 (371)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence 2 334556778899999999999999999999999999987643211100 001111223468889999999
Q ss_pred ccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCC-
Q 023500 152 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL- 230 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~- 230 (281)
+|++++|++++.|+.|++||..... ....+. .|..+|.++.|++++.+++++.|+.+++|.......
T Consensus 210 s~~g~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~-~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 210 SANGSRVAWVSHDSTVCLADADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 277 (371)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTE
T ss_pred ecccccccccccCCcceEEeeeccc-----------ceeeee-cccccceeeeecCCCCEEEEEcCCceEEEEeeCCCce
Confidence 9999999999999999999975332 222222 367889999999999888788888777764322100
Q ss_pred ------cCCc-------------------------cceeeeeeccCCCCCeeEEEEcCCCC---eeEEEeCCCCeEEEEE
Q 023500 231 ------IDGP-------------------------SYKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWE 276 (281)
Q Consensus 231 ------~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~s~~~Dg~v~iw~ 276 (281)
...+ ...........|...|+++++.+.+. ..|+|+|.||.|+|||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 278 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 0000 00000112235889999999987542 3588999999999999
Q ss_pred ccc
Q 023500 277 LAN 279 (281)
Q Consensus 277 ~~~ 279 (281)
+..
T Consensus 358 ~~~ 360 (371)
T d1k8kc_ 358 VRS 360 (371)
T ss_dssp HHH
T ss_pred CCc
Confidence 854
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-36 Score=251.89 Aligned_cols=264 Identities=26% Similarity=0.403 Sum_probs=188.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceee----------------eeeecCCCCCeeEEEEcCCCCEEEEe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC----------------VATLEGHENEVKSVSWNASGTLLATC 65 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~----------------~~~~~~h~~~v~~v~~~~~~~~l~s~ 65 (281)
|++.|++++|+|+|++||+|+ |+.|+|||..+++... .....+|...|++++|+|+|++|++|
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 889999999999999999987 8999999987654211 01123577789999999999999999
Q ss_pred cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCC------------------
Q 023500 66 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD------------------ 127 (281)
Q Consensus 66 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~------------------ 127 (281)
+.|+.|++|+..... ......+|...|.++.+++++..+++++.++.+++|+.......
T Consensus 140 ~~dg~v~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
T d1erja_ 140 AEDRLIRIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216 (388)
T ss_dssp ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred ccccccccccccccc---cccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence 999999999986553 35566788888888888888888888888888888876532100
Q ss_pred Cc-------------------eeeeee---eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcc
Q 023500 128 NW-------------------HCVQTI---SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS 185 (281)
Q Consensus 128 ~~-------------------~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 185 (281)
.. .....+ .....+|...|.+++|+|++++|++|+.|+.|++||+.............
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 296 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296 (388)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence 00 000000 01123678899999999999999999999999999986443221111110
Q ss_pred cceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEE------cCC
Q 023500 186 WRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW------SPG 258 (281)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~~ 258 (281)
..........|...+.++.|++++ ++++++.|+.+++|+.... ..+....+|...|+++++ +|+
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~l~~H~~~V~~~~~~~~~~~spd 367 (388)
T d1erja_ 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPE 367 (388)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEeCCCCCEEEEEEecCcccCCC
Confidence 011112223477889999999876 6888999999999976532 223445689999999875 455
Q ss_pred CCeeEEEeCCCCeEEEEEccc
Q 023500 259 ERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 259 ~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+ .+|+||+.||.|+||++..
T Consensus 368 ~-~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 368 Y-NVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp C-EEEEEEETTSEEEEEEEEE
T ss_pred C-CEEEEEeCCCEEEEEeeee
Confidence 5 5788999999999999864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-36 Score=245.48 Aligned_cols=240 Identities=17% Similarity=0.298 Sum_probs=198.9
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...|++++|+|+|++|++|+.|+.|++||...........+.+|...+.+++|+|++.++++++.|+.|++|++....
T Consensus 96 h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~- 174 (337)
T d1gxra_ 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT- 174 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-
T ss_pred CCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6788999999999999999999999999998766656677788999999999999999999999999999999987553
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
+.....+|...+.+++|+|++..+++++.|+.+++|++.... .+... .|...|.+++|+|++++|+++
T Consensus 175 --~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-----~~~~~-----~~~~~i~~l~~~~~~~~l~~~ 242 (337)
T d1gxra_ 175 --LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-----DFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp --EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-----ECSSCEEEEEECTTSSEEEEE
T ss_pred --ccccccccccccccccccccccccccccccccccccccccce-----eeccc-----ccccceEEEEEccccccccee
Confidence 455677899999999999999999999999999999886542 22222 367889999999999999999
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+.|+.+++||.+.... .....|...|.++.|++++ ++++++.|+.+++|+..... .+.
T Consensus 243 ~~d~~i~i~d~~~~~~-------------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--------~~~ 301 (337)
T d1gxra_ 243 MESSNVEVLHVNKPDK-------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------SIF 301 (337)
T ss_dssp ETTSCEEEEETTSSCE-------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------EEE
T ss_pred cccccccccccccccc-------------ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--------EEE
Confidence 9999999999864321 1112467889999999876 68889999999999765421 111
Q ss_pred eeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 241 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
...|...|++++|+|+++ +|++|+.||.|+|||+-
T Consensus 302 --~~~~~~~v~~~~~s~d~~-~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 302 --QSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp --EEECSSCEEEEEECTTSC-EEEEEETTSCEEEEEEE
T ss_pred --EccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEEE
Confidence 124778999999999876 57899999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-36 Score=245.62 Aligned_cols=243 Identities=20% Similarity=0.308 Sum_probs=196.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce---eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY---ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~ 78 (281)
|...|++++|+|+|++||||+ ||.|+|||...... .......+|.+.|.+++|+|+|++|++|+.|++|++||+..
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 789999999999999999987 89999999754321 12234457999999999999999999999999999999864
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
... .....+..|...+.++.|+|++.++++++.|+.|++|++.... ... ...+|...|.+++|++++..+
T Consensus 129 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-----~~~----~~~~~~~~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 129 PTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVR----QFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp C---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE----EECCCSSCEEEEEECTTSSEE
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccccccccc-----ccc----ccccccccccccccccccccc
Confidence 432 3456677899999999999999999999999999999886532 121 224688899999999999999
Q ss_pred EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccce
Q 023500 159 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
++|+.|+.+++||.+..+. +... .+...+.++++++++ .+++++.|+.+++|+.....
T Consensus 199 ~~~~~d~~v~i~d~~~~~~-----------~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-------- 257 (337)
T d1gxra_ 199 WTGGLDNTVRSWDLREGRQ-----------LQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------- 257 (337)
T ss_dssp EEEETTSEEEEEETTTTEE-----------EEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--------
T ss_pred cccccccccccccccccee-----------eccc--ccccceEEEEEcccccccceeccccccccccccccc--------
Confidence 9999999999999864321 1222 257789999999876 67888999999999775421
Q ss_pred eeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......|...|++++|+|+++ +|++++.||.|++||+..
T Consensus 258 --~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~ 296 (337)
T d1gxra_ 258 --KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp --EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred --cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCC
Confidence 122457889999999999876 678999999999999764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-36 Score=242.00 Aligned_cols=249 Identities=19% Similarity=0.274 Sum_probs=193.6
Q ss_pred ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee
Q 023500 3 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF 82 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~ 82 (281)
...+..++++|+|+.||.++ ++.+.+|+..+.. ..+.+.+|.+.|++++|+|+|++|++|+.|++|++||+......
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~--~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLT--DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSS--CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCc--eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 34566789999999999875 6679999987654 35667899999999999999999999999999999999765432
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecC--CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE-EE
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LV 159 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d--~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~ 159 (281)
....+.+|...|.+++|+|+++++++++.+ ..+++|+.+... ... ...+|...|.+++|+|++++ |+
T Consensus 94 -~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~h~~~v~~v~~~~~~~~~l~ 163 (311)
T d1nr0a1 94 -LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-----SNG----NLTGQARAMNSVDFKPSRPFRII 163 (311)
T ss_dssp -EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-----BCB----CCCCCSSCEEEEEECSSSSCEEE
T ss_pred -cccccccccCcccccccccccccccccccccccccccccccccc-----ccc----cccccccccccccccccceeeec
Confidence 234577899999999999999999998864 568999876542 112 23478899999999999874 88
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
+|+.|+.|++||.+..+. .... ..|..+|.++.++|++ ++++++.|+.+++|+........ .+..
T Consensus 164 sgs~d~~i~i~d~~~~~~-----------~~~~-~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~--~~~~ 229 (311)
T d1nr0a1 164 SGSDDNTVAIFEGPPFKF-----------KSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG--VFED 229 (311)
T ss_dssp EEETTSCEEEEETTTBEE-----------EEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--ECBC
T ss_pred cccccccccccccccccc-----------cccc-ccccccccccccCccccccccccccccccccccccccccc--cccc
Confidence 899999999999864321 2222 2467889999999876 57788899999999775432110 0001
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......+|...|++++|+|+++ +|++|+.||.|+|||+.+
T Consensus 230 ~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 230 DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVAT 269 (311)
T ss_dssp TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred cccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCC
Confidence 1122357899999999999876 578999999999999764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-35 Score=236.04 Aligned_cols=250 Identities=29% Similarity=0.500 Sum_probs=200.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|++++|+|++++||||+.|+.|+|||..+++ ++.++.+|...|.+++|+|++.++++++.++.+.+|+.....
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE- 92 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC-
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEEEeCCCCcEEEEeeecccccccccccccccccccccccc-
Confidence 88999999999999999999999999999987764 467889999999999999999999999999999999976554
Q ss_pred eEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
....+.+|...+.++.|+|+++.+++++.|+.+++|+++... ....+ .+|...+.+++|+|++.+|+++
T Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 93 --CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTF----TGHREWVRMVRPNQDGTLIASC 161 (317)
T ss_dssp --EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEE----ECCSSCEEEEEECTTSSEEEEE
T ss_pred --cccccccccccceeeeccCCCceEEeeccCcceeEeecccce-----eeeEE----ccCCCcceeeecccCCCEEEEE
Confidence 345567888999999999999999999999999999887542 22223 3678889999999999999999
Q ss_pred eCCCcEEEEeCCccccccC-CCC--------------------------------------------------cccceeE
Q 023500 162 SDDLTIKIWGADITRMQSG-DGY--------------------------------------------------ASWRHLC 190 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~-~~~--------------------------------------------------~~~~~~~ 190 (281)
+.|+.+++|+......... .+. ...+...
T Consensus 162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 241 (317)
T d1vyhc1 162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241 (317)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEE
Confidence 9999999998753321100 000 0001111
Q ss_pred EeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCC
Q 023500 191 TISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 269 (281)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~D 269 (281)
.+. .|...+.++.+++++ ++++++.|+.+++|+..... .+....+|..+|++++|+|+++ +|++|+.|
T Consensus 242 ~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~V~~~~~s~~~~-~l~s~s~D 310 (317)
T d1vyhc1 242 TLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTAP-YVVTGSVD 310 (317)
T ss_dssp EEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSSS-CEEEEETT
T ss_pred EEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCC
Confidence 121 256788899999876 67889999999999765321 2234457999999999999876 57899999
Q ss_pred CeEEEEE
Q 023500 270 GMIKIWE 276 (281)
Q Consensus 270 g~v~iw~ 276 (281)
|.|+|||
T Consensus 311 g~i~iWd 317 (317)
T d1vyhc1 311 QTVKVWE 317 (317)
T ss_dssp SEEEEEC
T ss_pred CeEEEeC
Confidence 9999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-34 Score=230.35 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=182.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeee-cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|++.|++++|+|+|++||||+.|+.|++||..+++. ...+ .+|...|.+++|+|+|++ ++++.|+.+++|++....
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~ 87 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGIS--NRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSG 87 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSS
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcc
Confidence 889999999999999999999999999999877653 3444 579999999999999875 556678999999864321
Q ss_pred ee-------------EEe-----------------Eee-------cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCC
Q 023500 81 EF-------------ECV-----------------SVL-------QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 123 (281)
Q Consensus 81 ~~-------------~~~-----------------~~~-------~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~ 123 (281)
.. ..+ ..+ ......+.+++|+|+++++++++.|+.|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~ 167 (299)
T d1nr0a2 88 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167 (299)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 000 000 01234567889999999999999999999998764
Q ss_pred CCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE
Q 023500 124 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 203 (281)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 203 (281)
.. .... ....|+..|.+++|+|++++|++++.|+.+++||......... ... ...|..+|.++
T Consensus 168 ~~------~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--------~~~-~~~h~~~v~~l 230 (299)
T d1nr0a2 168 AS------VSEV--KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH--------TNS-WTFHTAKVACV 230 (299)
T ss_dssp TE------EEEE--EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC--------CCC-CCCCSSCEEEE
T ss_pred cc------cccc--ccccccccccccccccccccccccccccccccccccccccccc--------ccc-ccccccccccc
Confidence 32 1111 1125788999999999999999999999999998764322110 001 12367889999
Q ss_pred EeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 204 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 204 ~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+|+|++ ++++++.|+.+++|+...... .........+...+.++.|.+ ++ +|++++.|+.|+|||+.
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNKPSD------HPIIIKGAHAMSSVNSVIWLN-ET-TIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTS------CCEEETTSSTTSCEEEEEEEE-TT-EEEEEETTSCEEEEECC
T ss_pred cccccccceEEEcCCCEEEEEECCCCCc------ceEEEecCCCCCcEEEEEECC-CC-EEEEEeCCCEEEEEecc
Confidence 999876 688899999999997754221 112222334556677777765 44 57789999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-32 Score=219.83 Aligned_cols=248 Identities=15% Similarity=0.261 Sum_probs=178.3
Q ss_pred ccceeEEEEcC--CCCEEEEeeCCCcEEEEecCCCce------eeeeeecCCCCCeeEEEEcCCCCEEEEec--CCCcEE
Q 023500 3 TRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDY------ECVATLEGHENEVKSVSWNASGTLLATCG--RDKSVW 72 (281)
Q Consensus 3 ~~~i~~~~~~~--~~~~l~tg~~d~~i~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~v~ 72 (281)
...|++++|+| +|++||+|+.||+|+|||...... .....+..|.++|.+++|+|++.+|++++ .++.++
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEE
Confidence 46899999998 678999999999999998753221 11233567899999999999999987765 467899
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
+|+...+. ++..+.+|...|+++.|+|++.. +++++.|+.+++|+..... ..... ....+|...|.+++|
T Consensus 143 ~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-----~~~~~-~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 143 FISWDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASD-RTHHKQGSFVRDVEF 213 (325)
T ss_dssp EEETTTCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEE-CSSSCTTCCEEEEEE
T ss_pred EEeecccc---cceeeeecccccccccccccccceEEEeecccccccccccccc-----cceec-ccccCCCCccEEeee
Confidence 99986554 46678899999999999999875 7789999999999875431 11122 223467888999999
Q ss_pred ccC-CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec---ccCcceEEEEeCCCceeeecCCCCcEEEEeccc
Q 023500 152 NAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREGIIASGAADDSVQFFVESK 227 (281)
Q Consensus 152 ~~~-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~ 227 (281)
+|+ +.+|++++.|+.|++||.+..+. ...+.+ .....++++.+.+..++++++.|+.+++|+...
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred ccccceeccccccccceeeeeeccccc-----------cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence 996 57899999999999999764322 111111 123345677777777899999999999997754
Q ss_pred CCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 228 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
. ...... ....|...+..+++.+.+...|++++.||.|+|||+
T Consensus 283 ~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 283 S-----KCVQKW--TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp T-----EEEEEE--ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred C-----CEEEEE--EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 2 111111 122333334444444333335789999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-30 Score=203.69 Aligned_cols=240 Identities=26% Similarity=0.411 Sum_probs=171.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|.+.|+|++ ++|++||||+.||+|+|||..+++ ++.++.+|.+.|.+++| ++++|++|+.|+.|++|++..+..
T Consensus 14 ~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 14 TSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLE--CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp SCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCC--EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence 567788765 579999999999999999987764 57889999999999886 678999999999999999865432
Q ss_pred eEE----------------------------------------eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeC
Q 023500 82 FEC----------------------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 121 (281)
Q Consensus 82 ~~~----------------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~ 121 (281)
... ...+..|...+.+..+.+ ..+++++.|+.+++|+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT 165 (293)
T ss_dssp EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET
T ss_pred cccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecC
Confidence 211 111234455555554443 46788899999999987
Q ss_pred CCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceE
Q 023500 122 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201 (281)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 201 (281)
.... .+..+ .+|...+..+.++ +..+++++.|+.|++||.+.... .... ..+...+.
T Consensus 166 ~~~~-----~~~~~----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~-~~~~~~v~ 222 (293)
T d1p22a2 166 STCE-----FVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-----------LRVL-EGHEELVR 222 (293)
T ss_dssp TTCC-----EEEEE----ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----------EEEE-CCCSSCEE
T ss_pred CCCc-----EEEEE----cccccccccccCC--CCeEEEecCCCEEEEEeccccee-----------eeee-cccceeee
Confidence 6542 22333 2566667766665 56899999999999999864321 1222 22455555
Q ss_pred EEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 202 SVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
.+.+ ....+++++.|+.+++|+....................+|..+|++++|++ . +|+|||.||+|+|||
T Consensus 223 ~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~-~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 223 CIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--F-QIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--S-CEEECCSSSEEEEEC
T ss_pred eccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--C-EEEEEecCCEEEEeC
Confidence 5544 345788999999999998754333222222233455678999999999964 3 578999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-30 Score=207.60 Aligned_cols=246 Identities=22% Similarity=0.374 Sum_probs=176.1
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|++.|.+ +++++|++||||+.|+.|+|||..+++ ++.++.+|.+.|.+++|+|+ +|++|+.|+.+++|+......
T Consensus 15 H~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~--~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~ 89 (342)
T d2ovrb2 15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC 89 (342)
T ss_dssp STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC--EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred cCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC--EEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccc
Confidence 8888865 477789999999999999999987764 57889999999999999874 999999999999998653211
Q ss_pred eE-----------------------------------------------------------------------------E
Q 023500 82 FE-----------------------------------------------------------------------------C 84 (281)
Q Consensus 82 ~~-----------------------------------------------------------------------------~ 84 (281)
.. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 169 (342)
T d2ovrb2 90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169 (342)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee
Confidence 00 0
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
+..+.+|... ...+.+++..+++++.|+.|++|+++... .+.. ..+|...+.++.+++ ++|++++.|
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-----~~~~----~~~~~~~v~~~~~~~--~~l~s~s~d 236 (342)
T d2ovrb2 170 LHTLQGHTNR--VYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHT----LTGHQSLTSGMELKD--NILVSGNAD 236 (342)
T ss_dssp EEEECCCSSC--EEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEE----ECCCCSCEEEEEEET--TEEEEEETT
T ss_pred eEEEcCcccc--cccccCCCCEEEEEeCCCeEEEeecccce-----eeeE----ecccccceeEEecCC--CEEEEEcCC
Confidence 0112233322 33345567789999999999999876542 2222 236788888877764 599999999
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeee-eec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL-KKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (281)
+.|++||....+... .......|...+.++.++++ ++++++.|+.+++|+..... ....+. ...
T Consensus 237 ~~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg~-----~i~~~~~~~~ 301 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQ---------TLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGE-----FIRNLVTLES 301 (342)
T ss_dssp SCEEEEETTTCCEEE---------EECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCC-----EEEEEEECTT
T ss_pred CEEEEEecccccccc---------cccccceeeeceeecccCCC-eeEEEcCCCEEEEEECCCCC-----EEEEEecccC
Confidence 999999976432210 00011124566777777654 77888999999999775432 212221 223
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCe----EEEEEcccCC
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGM----IKIWELANTL 281 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~----v~iw~~~~~~ 281 (281)
.+|...|++++|+|++ .++++|+.||+ |++||+...+
T Consensus 302 ~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~~~ 342 (342)
T d2ovrb2 302 GGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVDM 342 (342)
T ss_dssp GGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCCCC
T ss_pred CCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCCCC
Confidence 4688889999999976 57899999985 9999998754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-30 Score=211.72 Aligned_cols=236 Identities=19% Similarity=0.323 Sum_probs=163.8
Q ss_pred Cccce-eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC
Q 023500 2 HTRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 2 h~~~i-~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
|.+.| +|++ +++++||||+.|+.|+|||..+++ ++.++++|.+.|++++|+|+ .+|++|+.|++|++|++....
T Consensus 11 H~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~--~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~ 85 (355)
T d1nexb2 11 HMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKK--FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 85 (355)
T ss_dssp CSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTE--EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE
T ss_pred cCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCc--EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc
Confidence 77765 5554 568999999999999999987764 57889999999999999985 589999999999999875332
Q ss_pred eeEE----------------------------------------------------------------------------
Q 023500 81 EFEC---------------------------------------------------------------------------- 84 (281)
Q Consensus 81 ~~~~---------------------------------------------------------------------------- 84 (281)
....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (355)
T d1nexb2 86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165 (355)
T ss_dssp EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE
T ss_pred cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc
Confidence 1100
Q ss_pred ----------------------------eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee
Q 023500 85 ----------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS 136 (281)
Q Consensus 85 ----------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~ 136 (281)
+....++...+.++.|+|.+..+++++.|++|++|+..... .+..
T Consensus 166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~-- 238 (355)
T d1nexb2 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----LMYT-- 238 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-----EEEE--
T ss_pred ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc-----cccc--
Confidence 00011233344455566667777777777777777665432 1222
Q ss_pred eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEE-EeCCCceeeecC
Q 023500 137 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV-HWSREGIIASGA 215 (281)
Q Consensus 137 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~ 215 (281)
..+|...|.+++|++ ++|++++.||.|++||...... .+. .|...+.++ .+++++.+++++
T Consensus 239 --~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~l~~g 300 (355)
T d1nexb2 239 --LQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR-------------KFS-YHHTNLSAITTFYVSDNILVSG 300 (355)
T ss_dssp --ECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE-------------EEE-EECTTCCCCCEEEECSSEEEEE
T ss_pred --ccccccccccccccc--ceeeeeecccccccccccccce-------------ecc-cccCCceEEEEEcCCCCEEEEE
Confidence 247889999999875 5899999999999999863211 111 233333333 345566666677
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.|+.+++|+++.+.. +.....+|..+|++++|+|+ .++++++.||.++||.+
T Consensus 301 ~d~~i~vwd~~tg~~--------~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 301 SENQFNIYNLRSGKL--------VHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ETTEEEEEETTTCCB--------CCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEE
T ss_pred eCCEEEEEECCCCCE--------EEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEE
Confidence 899999998754321 11234578899999999985 57889999998766654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.1e-29 Score=204.45 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=177.4
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCc-eeeeeeecCCCCCeeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|++.|++++|+|++++||+|+.|++|+|||...+. ...+....+|..+|.+++|+|+ +.+|++|+.|++|++|++...
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 88999999999999999999999999999975543 2223334469999999999986 558999999999999998765
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV 159 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 159 (281)
.... .....+........+.++...+++++.|+++++|++....... ....... ............+.+.+..++
T Consensus 90 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 90 PSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV-IAVKNLN--SNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp SSEE--ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC-EEEEESC--SSSSSSCCCEEEEEECSSEEE
T ss_pred cccc--cccccccccccccccccccccccccccccccceeeccccccce-eeecccc--cccccceeeeeeeeccCCcee
Confidence 5322 2222333444556677788899999999999999875432211 1111111 011122334566778888999
Q ss_pred EeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCC--CceeeecCCCCcEEEEecccCCCcCCccce
Q 023500 160 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYK 237 (281)
Q Consensus 160 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 237 (281)
+++.|+.+++|++....... ..... ........+..+.+ ...+++++.|+.+.+|..............
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~ 235 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDN--------GTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp EEESTTEEEEEESSCCTTCC--------CEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred eecCCCcEEEEecccCcccc--------eeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence 99999999999976433211 01111 11223334444333 346888889999999976543221111100
Q ss_pred e------eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 238 M------LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 238 ~------~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
. .......|...|++++|+|+++ +|+||+.||.|+|||+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTT
T ss_pred ceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCC
Confidence 0 1112346777899999999876 688999999999999875
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.9e-31 Score=209.39 Aligned_cols=235 Identities=15% Similarity=0.244 Sum_probs=170.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCC-
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN- 80 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~- 80 (281)
|+++|++++|+| |+||+.||.|++||..+ ...+|...|.+++|+++ ..+++++.|+++++|++....
T Consensus 12 H~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-------~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~ 79 (287)
T d1pgua2 12 HNKGITALTVNP----LISGSYDGRIMEWSSSS-------MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEF 79 (287)
T ss_dssp CSSCEEEEETTT----TEEEETTSCEEETTTTE-------EECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEEC
T ss_pred CCCceEEEEECc----EEEEeCCCeEEEEECCC-------CCCCCCCCEEEEEecCC-CeEEEEeecccccccccccccc
Confidence 899999999997 89999999999998643 23579999999999875 467999999999999875311
Q ss_pred --eeEE-----------------eEeecCC--------ccceeEEEecCCCCeEEEEecCC-eEEEEeCCCCCCCCceee
Q 023500 81 --EFEC-----------------VSVLQGH--------AQDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCV 132 (281)
Q Consensus 81 --~~~~-----------------~~~~~~~--------~~~v~~v~~~p~~~~l~s~s~d~-~v~~w~~~~~~~~~~~~~ 132 (281)
.... +..+... .......+++|++..+++++.|+ .+++|++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~------- 152 (287)
T d1pgua2 80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE------- 152 (287)
T ss_dssp SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-------
T ss_pred ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc-------
Confidence 0000 0000000 01122345677778887777775 79999765321
Q ss_pred eeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc---
Q 023500 133 QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--- 209 (281)
Q Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 209 (281)
........|...+++++|+|++.+|++|+.||.|++||....... ......|..+|.+++|+|.+
T Consensus 153 -~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----------~~~~~~h~~~v~~~~~~p~~~~~ 220 (287)
T d1pgua2 153 -VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGA 220 (287)
T ss_dssp -EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------ECCSCCCSSCEEEEEECCCC---
T ss_pred -eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc-----------cccccccccccceeeeccccccc
Confidence 111222357788999999999999999999999999998643221 11123477889999887643
Q ss_pred --------eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 210 --------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 210 --------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
++++++.|+.+++|+..... .......+|...|++++|+|++ . |++++.|+.|++|++
T Consensus 221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~~~-~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 NEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRWNV 286 (287)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEEEE
T ss_pred ccccCCCCeeEeecCCCeEEEEECCCCC--------eEEEEeCCCCCCeEEEEECCCC-E-EEEEECCCeEEEEEE
Confidence 68899999999999764321 2234556899999999999975 3 678999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=8.7e-30 Score=206.09 Aligned_cols=245 Identities=15% Similarity=0.205 Sum_probs=178.4
Q ss_pred ceeEEEEcCCCCEEEEeeCCC-cEEEEecCCCceeeeeeecCCC-CCeeEEEEcC--CCCEEEEecCCCcEEEEEecCCC
Q 023500 5 TVRSCAWSPSGKLLATASFDA-TTCIWEDVGGDYECVATLEGHE-NEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGN 80 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~-~i~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~l~s~~~d~~v~~w~~~~~~ 80 (281)
.+++++|+|+|+.||.++.+. .++.|+........+..+.+|. ..|++++|+| +|.+|++|+.|++|++||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 567899999999999887554 3566765554445566777875 6799999998 56899999999999999986443
Q ss_pred ee-----EEeEeecCCccceeEEEecCCCCeEEEEec--CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEcc
Q 023500 81 EF-----ECVSVLQGHAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 153 (281)
Q Consensus 81 ~~-----~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (281)
.. .....+..|...|.+++|+|++..+++++. ++.+++|+.+... ++..+ .+|...|.+++|+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-----SLGEV----SGHSQRINACHLKQ 169 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-----EEEEC----CSCSSCEEEEEECS
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-----cceee----eecccccccccccc
Confidence 21 112335568889999999999999887765 5678899775432 23333 47889999999999
Q ss_pred CCCE-EEEeeCCCcEEEEeCCccccccCCCCcccceeEEee--cccCcceEEEEeCCC--ceeeecCCCCcEEEEecccC
Q 023500 154 KGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS--GYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKD 228 (281)
Q Consensus 154 ~~~~-l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 228 (281)
++.+ +++++.|+.+++|+....+.. .... ..+...|.+++|+|+ .++++++.|+.+++|+....
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~~~~~-----------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~ 238 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPPFKFS-----------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEE-----------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred cccceEEEeecccccccccccccccc-----------eecccccCCCCccEEeeeccccceeccccccccceeeeeeccc
Confidence 8764 778999999999987533211 1111 135677899999985 46888999999999976432
Q ss_pred CCcCCccceeeeeeccCCCCCeeEEEEc---CCCCeeEEEeCCCCeEEEEEccc
Q 023500 229 DLIDGPSYKMLLKKEKAHDMDVNSVQWS---PGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 229 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.....|..++..+.|+ |+++ +|++++.|+.|+|||+..
T Consensus 239 ---------~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 239 ---------EFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTT 282 (325)
T ss_dssp ---------CEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTT
T ss_pred ---------cccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCC
Confidence 1223334566666554444 4554 578999999999999864
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4e-29 Score=199.32 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=161.2
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee-cCCccceeEEEecCCCCeEEEEecCCeEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
..+.+.||.+.|++++|+|+|++|+||+.|++|++||+..+.. ...+ .+|...|++++|+|++. +++++.|+.++
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~---~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~ 79 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---NRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK 79 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---EECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---EEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence 3567899999999999999999999999999999999976653 3344 46889999999999986 56677899999
Q ss_pred EEeCCCCCCCCceee--------eeeeec-----------------------cCCccccEEEEEEccCCCEEEEeeCCCc
Q 023500 118 VWWAEDTDSDNWHCV--------QTISES-----------------------NNGHSSTIWALSFNAKGDKLVSCSDDLT 166 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~--------~~~~~~-----------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 166 (281)
+|+............ ..+... .......+.+++|+|++++|++|+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 159 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK 159 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred EeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998754321110000 000000 0012235678899999999999999999
Q ss_pred EEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeeccC
Q 023500 167 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA 245 (281)
Q Consensus 167 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (281)
+++||++.... .......|...|.++.+++++ ++++++.|+.+++|+....... ........
T Consensus 160 i~~~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------~~~~~~~~ 222 (299)
T d1nr0a2 160 VHVYKLSGASV-----------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL------AHTNSWTF 222 (299)
T ss_dssp EEEEEEETTEE-----------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE------SCCCCCCC
T ss_pred ccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccc------cccccccc
Confidence 99998753221 111122367889999999875 6788889999999977543211 11233457
Q ss_pred CCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 246 HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 246 h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
|..+|++++|+|+++ +|++|+.||.|+|||+..
T Consensus 223 h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 223 HTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTC
T ss_pred ccccccccccccccc-ceEEEcCCCEEEEEECCC
Confidence 899999999999875 688999999999999865
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.2e-29 Score=205.38 Aligned_cols=268 Identities=17% Similarity=0.201 Sum_probs=172.5
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce----eeeeeecCCCCCeeEEEE------cC-CCCEEEEecCCCc
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY----ECVATLEGHENEVKSVSW------NA-SGTLLATCGRDKS 70 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~----~~~~~~~~h~~~v~~v~~------~~-~~~~l~s~~~d~~ 70 (281)
|...|+++++++ ++++|||.|+.|+|||..+.+. ........|...+..+.. ++ ++..+++++.|+.
T Consensus 13 H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~ 90 (393)
T d1sq9a_ 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90 (393)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred ccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence 889999999864 6999999999999999654321 112222334444332222 22 2346789999999
Q ss_pred EEEEEecCCCeeEEe-----Eee--cCCccceeEEEecCC-----CCeEEEEecCCeEEEEeCCCCCCC---------Cc
Q 023500 71 VWIWEVMPGNEFECV-----SVL--QGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDSD---------NW 129 (281)
Q Consensus 71 v~~w~~~~~~~~~~~-----~~~--~~~~~~v~~v~~~p~-----~~~l~s~s~d~~v~~w~~~~~~~~---------~~ 129 (281)
|++|++......... ..+ ..+...+..++|.++ ..++++++.|+++++|++...... ..
T Consensus 91 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 170 (393)
T d1sq9a_ 91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT 170 (393)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred EEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccc
Confidence 999998654321111 111 124455677788775 357899999999999987532110 00
Q ss_pred eeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc
Q 023500 130 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG 209 (281)
Q Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (281)
............+...+.+++|+|++ +|++|+.|++|++||+...++... +.....+ ..|..+|.+++|+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~-----~~~~~~l-~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 171 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN-----FESQHSM-INNSNSIRSVKFSPQG 243 (393)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE-----EECCC----CCCCCEEEEEECSST
T ss_pred eecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccc-----ccccccc-ccccceEEEccccccc
Confidence 11111111223455668899999997 899999999999999875432110 0111111 2378899999999986
Q ss_pred -eeeecCCCCc---EEEEecccCCCcCC----ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 210 -IIASGAADDS---VQFFVESKDDLIDG----PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 210 -~~~~~~~d~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
++++++.|++ +++|+......... ...........+|...|++++|+|+++ +|+||+.|++|+|||+..
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT
T ss_pred ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCC
Confidence 6777877764 88997754322110 001112223458999999999999875 688999999999999865
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.4e-27 Score=191.35 Aligned_cols=218 Identities=20% Similarity=0.341 Sum_probs=167.3
Q ss_pred eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEE
Q 023500 38 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK 117 (281)
Q Consensus 38 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~ 117 (281)
...++++||.+.|++++|+|++.+|+|||.||+|++||+..+. .+..+..|...|.+++|+|++.++++++.|+.++
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---eEEEEecccccEEeeEeeccceeeeeecccceee
Confidence 3467889999999999999999999999999999999987653 4667788999999999999999999999999999
Q ss_pred EEeCCCCCCCCceeeeeee-------------------------------------eccCCccccEEEEEEccCCCEEEE
Q 023500 118 VWWAEDTDSDNWHCVQTIS-------------------------------------ESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~-------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
+|+......... ....+. .....+...+....+.+...++++
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 123 IYNLKTREGNVR-VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEESSSSCSCCC-EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccc-cceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 998754321110 000000 000133456778888888999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 239 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
++.|+.+++||..... ....+. .|...|.+++|+|++ ++++++.|+.+++|+..... ...
T Consensus 202 ~~~d~~v~i~d~~~~~-----------~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~-------~~~ 262 (340)
T d1tbga_ 202 GACDASAKLWDVREGM-----------CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-------ELM 262 (340)
T ss_dssp EETTTEEEEEETTTTE-----------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-------EEE
T ss_pred eecCceEEEEECCCCc-----------EEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc-------ccc
Confidence 9999999999986432 222222 477889999999876 68888999999999775321 111
Q ss_pred eeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 240 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 240 ~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
......|...|++++|+|++. +|++|+.||.|+|||+..
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~ 301 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTT
T ss_pred ccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCC
Confidence 223446677899999999875 678999999999999864
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.2e-27 Score=194.64 Aligned_cols=236 Identities=23% Similarity=0.304 Sum_probs=166.2
Q ss_pred EEEeeCCCcEEEEecCCCce--eeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe----------
Q 023500 18 LATASFDATTCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV---------- 85 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~---------- 85 (281)
.+.+..++...+|+...... ..+....+|.+.|+|++|+|+|++|++|+ |++|++||+..+......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence 34677888899998654321 12233346999999999999999999987 899999999765432111
Q ss_pred -----EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 86 -----SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 86 -----~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
.....|...|++++|+|++++|++|+.|+.|++|+..... .+.. ..+|...|.+++|++++..+++
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-----~~~~----~~~h~~~v~~~~~~~~~~~~~~ 180 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMI----LQGHEQDIYSLDYFPSGDKLVS 180 (388)
T ss_dssp ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEE----ECCCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccc-----cccc----cccccccccccccccccccccc
Confidence 1123577789999999999999999999999999876542 2222 2478899999999999999999
Q ss_pred eeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeC-CC-ceeeecCCCCcEEEEecccCCCcCCcccee
Q 023500 161 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-RE-GIIASGAADDSVQFFVESKDDLIDGPSYKM 238 (281)
Q Consensus 161 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 238 (281)
++.++.+++||...... ... .. +.....++.+. ++ .++++++.|+.+++|+........ ....
T Consensus 181 ~~~~~~i~~~d~~~~~~-----------~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~~ 245 (388)
T d1erja_ 181 GSGDRTVRIWDLRTGQC-----------SLT-LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE--RLDS 245 (388)
T ss_dssp EETTSEEEEEETTTTEE-----------EEE-EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE--EEC-
T ss_pred cccceeeeeeecccccc-----------ccc-cc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccce--eecc
Confidence 99999999998764321 111 11 22333344444 34 478889999999999775432110 0011
Q ss_pred eeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 239 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 239 ~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.......|...|++++|+|++. +|++++.||.|++||+..
T Consensus 246 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~ 285 (388)
T d1erja_ 246 ENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQN 285 (388)
T ss_dssp -----CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred ccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccC
Confidence 1122357889999999999876 678999999999999864
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.9e-26 Score=182.53 Aligned_cols=197 Identities=31% Similarity=0.609 Sum_probs=165.6
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCe
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~ 81 (281)
|...+.++.|+|+++.+++++.|+.+++||..++. .+..+.+|...+.+++|+|++.+|++++.|+.|++|++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~- 176 (317)
T d1vyhc1 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE- 176 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-
T ss_pred ccccceeeeccCCCceEEeeccCcceeEeecccce--eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-
Confidence 56788999999999999999999999999987764 466788999999999999999999999999999999987654
Q ss_pred eEEeEeecCCccceeEEEecCCC--------------------CeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTM--------------------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~--------------------~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
....+.+|...+.++.|+|+. ..+++++.|+.|++|+.... +++..+ .+
T Consensus 177 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~----~~ 245 (317)
T d1vyhc1 177 --CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----MCLMTL----VG 245 (317)
T ss_dssp --EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----EEEEEE----EC
T ss_pred --eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-----cEEEEE----eC
Confidence 356677888889999998863 36889999999999987654 233333 36
Q ss_pred ccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcE
Q 023500 142 HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220 (281)
Q Consensus 142 h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~ 220 (281)
|...|.+++|+|++++|++|+.||.|++||+...+ .+..+. .|..+|.+++|++++ ++++++.|+.+
T Consensus 246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i 313 (317)
T d1vyhc1 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-----------CMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTV 313 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC-----------CCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc-----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 88999999999999999999999999999986432 122332 378899999999875 78899999999
Q ss_pred EEEe
Q 023500 221 QFFV 224 (281)
Q Consensus 221 ~~~~ 224 (281)
++|+
T Consensus 314 ~iWd 317 (317)
T d1vyhc1 314 KVWE 317 (317)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9994
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=5.1e-26 Score=185.16 Aligned_cols=249 Identities=10% Similarity=0.063 Sum_probs=173.2
Q ss_pred CccceeEEEEcCCCCEEEEeeCCC--cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~--~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~ 79 (281)
|...|++++|+|||++|++++.+. .|.+||..+++ ...+.+|...|.+++|+|+|++|++++.++.+++|++...
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 117 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 117 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---EEEeeCCCceEEeeeecccccccceecccccccccccccc
Confidence 778899999999999998877664 78999987764 3456789999999999999999999999999999999765
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeEEEEe----------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS----------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL 149 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (281)
.. ...+..|...+.+++|+|++++|+.++ .++.+++|+..... ...+ ..|...+..+
T Consensus 118 ~~---~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~------~~~~----~~~~~~~~~~ 184 (360)
T d1k32a3 118 KP---TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------IFAA----TTENSHDYAP 184 (360)
T ss_dssp CE---EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------EEEC----SCSSSBEEEE
T ss_pred ce---eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc------eeee----cccccccccc
Confidence 53 455677888899999999999988544 44568899876532 1111 2345667889
Q ss_pred EEccCCCEEEEeeCCCcEEEEeCCccccccCCC------------Cc--cc------------------ceeEEee----
Q 023500 150 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG------------YA--SW------------------RHLCTIS---- 193 (281)
Q Consensus 150 ~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~------------~~--~~------------------~~~~~~~---- 193 (281)
.|+|+++.|++++.++.+++|+........... .. .+ .....+.
T Consensus 185 ~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (360)
T d1k32a3 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG 264 (360)
T ss_dssp EECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB
T ss_pred cccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC
Confidence 999999999999999999999854321110000 00 00 0000000
Q ss_pred -----cccCcceEEEEeCCCc----eeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 194 -----GYHDRTIFSVHWSREG----IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 194 -----~~~~~~v~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
..+...+..+.+...+ ++++++.++.+++|+..... ...|...|.+++|+|+|+. |+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------~~~~~~~v~~~~~SpDG~~-l~ 330 (360)
T d1k32a3 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------------VTEVKNNLTDLRLSADRKT-VM 330 (360)
T ss_dssp CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------------EEEEEEEEEEEEECTTSCE-EE
T ss_pred ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-------------EEEecCCcCEEEECCCCCE-EE
Confidence 0011111222222221 35566678888888664321 1123456899999999875 67
Q ss_pred EeCCCCeEEEEEcccC
Q 023500 265 SASDDGMIKIWELANT 280 (281)
Q Consensus 265 s~~~Dg~v~iw~~~~~ 280 (281)
+++.||.|++||+..+
T Consensus 331 ~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 331 VRKDDGKIYTFPLEKP 346 (360)
T ss_dssp EEETTSCEEEEESSCT
T ss_pred EEECCCeEEEEECCCC
Confidence 8999999999998754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.6e-25 Score=185.44 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=163.2
Q ss_pred CEEEEeeCCCcEEEEecCCCcee--e------eeeecCCCCCeeEEEEcCC-----CCEEEEecCCCcEEEEEecCCCe-
Q 023500 16 KLLATASFDATTCIWEDVGGDYE--C------VATLEGHENEVKSVSWNAS-----GTLLATCGRDKSVWIWEVMPGNE- 81 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~--~------~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~v~~w~~~~~~~- 81 (281)
.++++++.||.+++|+....... . ......+...+..++|.++ +.++++++.|+++++|++.....
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 57889999999999985432110 0 0111235567788888775 45789999999999999853211
Q ss_pred -----------e---EEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeee--eeccCCcccc
Q 023500 82 -----------F---ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI--SESNNGHSST 145 (281)
Q Consensus 82 -----------~---~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~--~~~~~~h~~~ 145 (281)
. ........+...+.+++|+|++ ++++|+.|++|++|++.... .+..+ .....+|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-----~~~~~~~~~~l~~h~~~ 233 (393)
T d1sq9a_ 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLYNFESQHSMINNSNS 233 (393)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEEEEECCC---CCCCC
T ss_pred cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-----cccccccccccccccce
Confidence 0 1112223456678999999987 88999999999999887542 22222 2233579999
Q ss_pred EEEEEEccCCCEEEEeeCCCc---EEEEeCCccccccCCC-CcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcE
Q 023500 146 IWALSFNAKGDKLVSCSDDLT---IKIWGADITRMQSGDG-YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSV 220 (281)
Q Consensus 146 v~~~~~~~~~~~l~s~~~d~~---i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~ 220 (281)
|.+++|+|++++|++|+.|++ |++||++.+....... .............|...|.+++|+|++ ++++++.|+.+
T Consensus 234 V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v 313 (393)
T d1sq9a_ 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313 (393)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence 999999999999999998874 8999987543221100 000001111122488899999999976 78999999999
Q ss_pred EEEecccCCCcCCccceeeeeeccCC---------------------CCCeeEEEEcCCCC---------eeEEEeCCCC
Q 023500 221 QFFVESKDDLIDGPSYKMLLKKEKAH---------------------DMDVNSVQWSPGER---------RLLASASDDG 270 (281)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~h---------------------~~~v~~~~~~~~~~---------~~~~s~~~Dg 270 (281)
++|+...+.. +....+| ...+.++.|.+.+. ..+++++.|+
T Consensus 314 ~vWd~~~g~~---------~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 384 (393)
T d1sq9a_ 314 RFWDVKTKER---------ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 384 (393)
T ss_dssp EEEETTTTEE---------EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEECCCCCE---------EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCC
Confidence 9998765321 1112223 23456677665421 2377888899
Q ss_pred eEEEEEc
Q 023500 271 MIKIWEL 277 (281)
Q Consensus 271 ~v~iw~~ 277 (281)
.||+|.-
T Consensus 385 ~ir~~~~ 391 (393)
T d1sq9a_ 385 SIRWFRE 391 (393)
T ss_dssp EEEEEEE
T ss_pred eEEEEeC
Confidence 9999863
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.5e-24 Score=171.61 Aligned_cols=213 Identities=25% Similarity=0.481 Sum_probs=150.3
Q ss_pred eeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeE
Q 023500 37 YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 116 (281)
Q Consensus 37 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v 116 (281)
..+.+.++||.+.|.+ +++++|++|+|||.|++|++||+..++ ++.++.+|...|.+++|+|+ ++++++.|+++
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~ 79 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL 79 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence 3456788999999865 366789999999999999999997654 46788999999999999985 89999999999
Q ss_pred EEEeCCCCCCCC-----------------------------------ceeeeeee-------------------------
Q 023500 117 KVWWAEDTDSDN-----------------------------------WHCVQTIS------------------------- 136 (281)
Q Consensus 117 ~~w~~~~~~~~~-----------------------------------~~~~~~~~------------------------- 136 (281)
++|+........ .+....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence 999865421000 00000000
Q ss_pred -----------eccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEe
Q 023500 137 -----------ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 205 (281)
Q Consensus 137 -----------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (281)
....+|...+ ..+.+++.++++|+.||.|++||....+. .... ..|...+.++++
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~-----------~~~~-~~~~~~v~~~~~ 225 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTL-TGHQSLTSGMEL 225 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEE-CCCCSCEEEEEE
T ss_pred EEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeeccccee-----------eeEe-cccccceeEEec
Confidence 0001233333 33445677899999999999998764321 2222 236677888888
Q ss_pred CCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 206 SREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 206 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+++ ++++++.|+.+++|+..... . ...+.....|...+.++.+++ .++++|+.||.|+|||+.+
T Consensus 226 ~~~-~l~s~s~d~~i~iwd~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 226 KDN-ILVSGNADSTVKIWDIKTGQ-----C-LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp ETT-EEEEEETTSCEEEEETTTCC-----E-EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTT
T ss_pred CCC-EEEEEcCCCEEEEEeccccc-----c-cccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCC
Confidence 764 88999999999999765421 1 222334456778888888875 3678999999999999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.4e-24 Score=170.60 Aligned_cols=215 Identities=20% Similarity=0.325 Sum_probs=149.7
Q ss_pred eeeecCCCCCe-eEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 40 VATLEGHENEV-KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 40 ~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
..+++||...| .|++| ++++|+||+.|++|++||+..+ +++..+.+|...|++++|+|+ +++++++.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i 78 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRV 78 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence 46789999886 56554 6789999999999999998755 356788999999999999985 58999999999999
Q ss_pred EeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCC--------------c
Q 023500 119 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY--------------A 184 (281)
Q Consensus 119 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~--------------~ 184 (281)
|+..... +..... ...+........+++++..+++++.|+.|++|++........... .
T Consensus 79 w~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
T d1nexb2 79 WDIKKGC-----CTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 151 (355)
T ss_dssp EETTTTE-----EEEEEC--CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCT
T ss_pred ccccccc-----cccccc--cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccc
Confidence 9876542 111111 122344456677788888999999999999998753221100000 0
Q ss_pred --------------------------------------ccceeEEeecccCcceEEEEeCCC-ceeeecCCCCcEEEEec
Q 023500 185 --------------------------------------SWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVE 225 (281)
Q Consensus 185 --------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~~~~~~~ 225 (281)
..+.... ...+...+.++.+++. ..+++++.|+.+++|+.
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 230 (355)
T d1nexb2 152 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230 (355)
T ss_dssp TEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ceeeeeeeccccccccccccceeeeecccceeeeeecccccceee-eeccccccccccccccceeeecccccceEEeeec
Confidence 0000000 0112334445566654 46788889999999976
Q ss_pred ccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcccC
Q 023500 226 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 280 (281)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~~ 280 (281)
... .......+|...|++++|++ .++++++.||.|++||+...
T Consensus 231 ~~~---------~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 231 ENG---------ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp TTC---------CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTC
T ss_pred ccc---------cccccccccccccccccccc---ceeeeeeccccccccccccc
Confidence 542 22344568999999999985 35789999999999998653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.7e-23 Score=162.85 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=142.7
Q ss_pred CccceeEEEEcCCCCEEEEeeCCCcEEEEecCCCce----ee-----------------eeeecCCCC--------CeeE
Q 023500 2 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY----EC-----------------VATLEGHEN--------EVKS 52 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~----~~-----------------~~~~~~h~~--------~v~~ 52 (281)
|...|.++++++++ .+++++.|+++++|+....+. .. +..+....+ ....
T Consensus 45 h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (287)
T d1pgua2 45 HSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 123 (287)
T ss_dssp CCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred CCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccccee
Confidence 77889999998765 467899999999997432110 00 000111111 1123
Q ss_pred EEEcCCCCEEEEecCC-CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCcee
Q 023500 53 VSWNASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC 131 (281)
Q Consensus 53 v~~~~~~~~l~s~~~d-~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~ 131 (281)
.+++|++..+++++.| +.+++|++..... .......|...+++++|+|++.+|++++.|+.|++|++.... .
T Consensus 124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~ 196 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEV--SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----V 196 (287)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETTEEEE--EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----E
T ss_pred eeeeccCcceeeeccccceeeeeeccccce--eeeeeeccCCceeEEEeccCccccccccccccccceeecccc-----c
Confidence 4567788887777766 4799999853321 222234577789999999999999999999999999886542 1
Q ss_pred eeeeeeccCCccccEEEEEEccC----------CCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceE
Q 023500 132 VQTISESNNGHSSTIWALSFNAK----------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF 201 (281)
Q Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~----------~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 201 (281)
. .....+|...|.+++|+|. +.+|++|+.|+.|++||++... + .......|...|.
T Consensus 197 ~---~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~----------~-~~~~~~~h~~~V~ 262 (287)
T d1pgua2 197 K---TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----------K-IIKALNAHKDGVN 262 (287)
T ss_dssp E---ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----------C-CEEETTSSTTCEE
T ss_pred c---cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC----------e-EEEEeCCCCCCeE
Confidence 1 1123478899999999874 4689999999999999875321 1 1122235788999
Q ss_pred EEEeCCCceeeecCCCCcEEEEec
Q 023500 202 SVHWSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~d~~~~~~~~ 225 (281)
++.|++++.+++++.|+.+++|++
T Consensus 263 ~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 263 NLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEE
T ss_pred EEEECCCCEEEEEECCCeEEEEEE
Confidence 999999999999999999999953
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.7e-22 Score=154.38 Aligned_cols=207 Identities=23% Similarity=0.421 Sum_probs=141.8
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 118 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~ 118 (281)
.+....+|...|+|++ ++|++|+|||.|++|++||+...+ ++.++.+|...|.+++| ++++|++|+.|+.|++
T Consensus 7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence 3455677889999875 578999999999999999997654 56788999999999887 4579999999999999
Q ss_pred EeCCCCCCCCc--------------------------eeee--------eeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 119 WWAEDTDSDNW--------------------------HCVQ--------TISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 119 w~~~~~~~~~~--------------------------~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
|++........ ..+. ........|...+..+.+.+ ..+++++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d 157 (293)
T d1p22a2 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGD 157 (293)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETT
T ss_pred cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCC
Confidence 99865321000 0000 00000124555565555543 467788888
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeecc
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 244 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (281)
+.+++||....++ ...+. .+...+..+.+++ ..+++++.|+.+++|+.... .......
T Consensus 158 ~~i~~~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~---------~~~~~~~ 215 (293)
T d1p22a2 158 RTIKVWNTSTCEF-----------VRTLN-GHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECG---------ACLRVLE 215 (293)
T ss_dssp SEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEEET-TEEEEEETTSCEEEEETTTC---------CEEEEEC
T ss_pred CceeeecCCCCcE-----------EEEEc-ccccccccccCCC-CeEEEecCCCEEEEEecccc---------eeeeeec
Confidence 9999998764321 22222 2455666666654 47888999999999977542 1233445
Q ss_pred CCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 245 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 245 ~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
.|...+..+.+ ++ .+|++++.||.|++||+..
T Consensus 216 ~~~~~v~~~~~--~~-~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 216 GHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp CCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHH
T ss_pred ccceeeeeccc--cc-eEEEEEcCCCEEEEEECCC
Confidence 67777766544 33 4688999999999999753
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.3e-22 Score=160.26 Aligned_cols=220 Identities=13% Similarity=0.039 Sum_probs=147.7
Q ss_pred eeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCC-CeEEEEecCCeEE
Q 023500 39 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIK 117 (281)
Q Consensus 39 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~d~~v~ 117 (281)
.+...++|++.|++|+|+|++++|++||.|++|++||+.............+|...|.+++|+|++ .++++|+.|++|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 355668999999999999999999999999999999997665433344445799999999999875 5799999999999
Q ss_pred EEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-cc
Q 023500 118 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YH 196 (281)
Q Consensus 118 ~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~ 196 (281)
+|+...... .... ...+........+.++...+++++.|+.+++||.+...... ........ ..
T Consensus 83 ~w~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~-------~~~~~~~~~~~ 147 (342)
T d1yfqa_ 83 KVDLIGSPS-----FQAL---TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV-------IAVKNLNSNNT 147 (342)
T ss_dssp EECSSSSSS-----EEEC---BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC-------EEEEESCSSSS
T ss_pred eeecccccc-----cccc---cccccccccccccccccccccccccccccceeeccccccce-------eeecccccccc
Confidence 998765431 1111 11223334455666778899999999999999875322110 00000000 01
Q ss_pred CcceEEEEeC-CCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEE
Q 023500 197 DRTIFSVHWS-REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 275 (281)
Q Consensus 197 ~~~v~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw 275 (281)
......+.+. ....+++++.|+.+++|+........ . ......+...+.+..+.+.+...+++++.||.+.+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN-----G-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC-----C-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred cceeeeeeeeccCCceeeecCCCcEEEEecccCcccc-----e-eeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence 1111222222 34467888899999999775432211 1 112233445567777776666678899999999999
Q ss_pred Eccc
Q 023500 276 ELAN 279 (281)
Q Consensus 276 ~~~~ 279 (281)
++..
T Consensus 222 ~~~~ 225 (342)
T d1yfqa_ 222 FFDD 225 (342)
T ss_dssp ECCT
T ss_pred EecC
Confidence 8754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=4.4e-22 Score=161.59 Aligned_cols=187 Identities=9% Similarity=0.022 Sum_probs=139.7
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCC--cEEEEEecCCCeeEE
Q 023500 8 SCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFEC 84 (281)
Q Consensus 8 ~~~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~~w~~~~~~~~~~ 84 (281)
.-.||| ||+++|+++ .+.|.+||..++... .+ +|...|.+++|+|||++|++++.+. .|++||...+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---- 77 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---- 77 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE---Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----
Confidence 456999 999999887 578999998776532 22 6999999999999999998776553 79999987654
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEee--
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-- 162 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-- 162 (281)
...+..|...+.+++|+|+++++++++.++.+++|+.+... ....+ ..|...+.+++|+|++++|+.+.
T Consensus 78 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-----PTVIE----RSREAMITDFTISDNSRFIAYGFPL 148 (360)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEE----ECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EEEeeCCCceEEeeeecccccccceeccccccccccccccc-----eeeee----ecccccccchhhccceeeeeeeccc
Confidence 34567899999999999999999999999999999886543 11222 24667788899999999988543
Q ss_pred --------CCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEec
Q 023500 163 --------DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE 225 (281)
Q Consensus 163 --------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~ 225 (281)
.++.+++|+....+.. .. ..+...+..+.|+++| .++.++.++.+.+|+.
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~~~~~------------~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEGRKIF------------AA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEE------------EC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cccceeeccccceeeeccccCcee------------ee-cccccccccccccCCCCEEEEEeCCCceEcccc
Confidence 4556889987643221 11 1234556677888876 4666777777777753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1e-21 Score=164.10 Aligned_cols=259 Identities=8% Similarity=0.036 Sum_probs=164.0
Q ss_pred EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeE--EeEeecCCccc
Q 023500 17 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--CVSVLQGHAQD 94 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~--~~~~~~~~~~~ 94 (281)
++++.+.||.|+|||..+++ .+.++..| ..+..++|+|||++|++++.|++|++||+..++... .+....+|...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~--~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKK--IVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp EEEEETTTTEEEEEETTTCS--EEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCc--EEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 56889999999999998875 46777766 468999999999999999999999999997665322 22333456677
Q ss_pred eeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCC------------------c-eeee-------------------ee
Q 023500 95 VKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDN------------------W-HCVQ-------------------TI 135 (281)
Q Consensus 95 v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~------------------~-~~~~-------------------~~ 135 (281)
+.++.|+|+++++ +++..++++++|+.+...... . ..+. ..
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 7888999999976 555688999999876532100 0 0000 00
Q ss_pred --------eeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccccC----C---------------------
Q 023500 136 --------SESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSG----D--------------------- 181 (281)
Q Consensus 136 --------~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~----~--------------------- 181 (281)
.....++...+..+.|+|++++++++. .+..+.+++....+.... .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T d1hzua2 191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270 (426)
T ss_dssp ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence 000012344567889999998777665 455677776542221100 0
Q ss_pred -----C-------------CcccceeEEeecccCcceEEEEeCCCceeee--------cCCCCcEEEEecccCCCcCCcc
Q 023500 182 -----G-------------YASWRHLCTISGYHDRTIFSVHWSREGIIAS--------GAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 182 -----~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
+ ...++....+. .|...+..++++|++..+. +..++++++|+...........
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~ 349 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 349 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred ccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence 0 00011111122 2455677889999885443 3457899999876433211000
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEe----CCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASA----SDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~----~~Dg~v~iw~~~~ 279 (281)
..........|...|.+++|+|+|+++++++ +.|+.|+|||..+
T Consensus 350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence 0000011234567799999999998877664 4688999999764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1e-17 Score=132.11 Aligned_cols=236 Identities=12% Similarity=0.157 Sum_probs=158.8
Q ss_pred cceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE-EEEecCCCcEEEEEecCCCe
Q 023500 4 RTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNE 81 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~~w~~~~~~~ 81 (281)
.....++|+|||++| ++++.++.|++||..+++ .+..+..|. ....+.|++++.. ++++..++.+.+|+......
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV 108 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeeccc-cccccccccccccccccccccceeeeccccccee
Confidence 346789999999976 577788999999988764 456666655 4578999999886 45667788999999875542
Q ss_pred eEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEE
Q 023500 82 FECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS 160 (281)
Q Consensus 82 ~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 160 (281)
...+.. .....++.|+|++..+ +++..+..+.+|+..... ....+. +...+..+.++|++..+++
T Consensus 109 ---~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~ 174 (301)
T d1l0qa2 109 ---AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----VINTVS-----VGRSPKGIAVTPDGTKVYV 174 (301)
T ss_dssp ---EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-----CCSSEEEEEECTTSSEEEE
T ss_pred ---eeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccc-----eeeecc-----cCCCceEEEeeccccceee
Confidence 333333 3457889999999876 466667889999776542 222222 2345778999999988777
Q ss_pred eeCC-CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eee--cCCCCcEEEEecccCCCcCCcc
Q 023500 161 CSDD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IAS--GAADDSVQFFVESKDDLIDGPS 235 (281)
Q Consensus 161 ~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~~~d~~~~~~~~~~~~~~~~~~ 235 (281)
+..+ +.+.+|+...... .... .....+..+.+++++. +++ ...++.+.+|+.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~------ 235 (301)
T d1l0qa2 175 ANFDSMSISVIDTVTNSV-----------IDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ 235 (301)
T ss_dssp EETTTTEEEEEETTTTEE-----------EEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------
T ss_pred ecccccccccccccceee-----------eecc--cccCCcceeeccccccccccccccceeeeeeeeecCCCe------
Confidence 7665 4555665442211 1111 1233445566776652 222 2345678999765321
Q ss_pred ceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 236 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 236 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
...... +...+++++|+|++++++++++.|+.|++||+.+
T Consensus 236 ---~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 236 ---ITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp ---EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ---EEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 112222 2346899999999988888999999999999865
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=2e-18 Score=138.35 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=148.0
Q ss_pred CEEEEeeCCCcEEEEecCCCceeeeeeecC--CCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEee--cC
Q 023500 16 KLLATASFDATTCIWEDVGGDYECVATLEG--HENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVL--QG 90 (281)
Q Consensus 16 ~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~--~~ 90 (281)
++|++++.|+.|.+||..+.+ .++.+.. +...+..++|+|||+++ ++++.++.|.+||+..++........ ..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~--~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCe--EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 589999999999999998775 3555543 44567899999999987 57788999999999876643222111 11
Q ss_pred CccceeEEEecCCCCeEEEEec------------CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 91 HAQDVKMVQWHPTMDVLFSCSY------------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 91 ~~~~v~~v~~~p~~~~l~s~s~------------d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
+...+..++|+|++..+++++. +..+.+|+..... ....+. +...+..++|+|+++++
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~-----~~~~~~~~~~s~dg~~l 149 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----RRKAFE-----APRQITMLAWARDGSKL 149 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----EEEEEE-----CCSSCCCEEECTTSSCE
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-----EEEecc-----ccCCceEEEEcCCCCEE
Confidence 2344668999999999887764 4566777655431 222222 23456789999999999
Q ss_pred EEeeCCCcEEEEeCCccccccC--------------CCCc-----ccce------------------------e------
Q 023500 159 VSCSDDLTIKIWGADITRMQSG--------------DGYA-----SWRH------------------------L------ 189 (281)
Q Consensus 159 ~s~~~d~~i~~w~~~~~~~~~~--------------~~~~-----~~~~------------------------~------ 189 (281)
++++.+ +.+||......... .+.. .... .
T Consensus 150 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (337)
T d1pbyb_ 150 YGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE 227 (337)
T ss_dssp EEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred EEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence 988755 66787653221100 0000 0000 0
Q ss_pred -----EEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEE
Q 023500 190 -----CTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 264 (281)
Q Consensus 190 -----~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 264 (281)
......+...+..+.+++++.++.+ .++.+++|+..... ..... .+...+.+++|+|+|+. ++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~dG~~-l~ 295 (337)
T d1pbyb_ 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFG-AYNVLESFDLEKNA--------SIKRV--PLPHSYYSVNVSTDGST-VW 295 (337)
T ss_dssp TCCEEEEEEEECSSCEEEEEECTTSSEEEE-EESEEEEEETTTTE--------EEEEE--ECSSCCCEEEECTTSCE-EE
T ss_pred CCcEEEEEecCCCcceEEEEecccceEEEE-ccccEEEEECCCCc--------EEEEE--cCCCCEEEEEECCCCCE-EE
Confidence 0000011223334445554443332 25778888765421 11111 24556899999999875 55
Q ss_pred EeCCCCeEEEEEccc
Q 023500 265 SASDDGMIKIWELAN 279 (281)
Q Consensus 265 s~~~Dg~v~iw~~~~ 279 (281)
+++.|+.|+|||..+
T Consensus 296 v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 296 LGGALGDLAAYDAET 310 (337)
T ss_dssp EESBSSEEEEEETTT
T ss_pred EEeCCCcEEEEECCC
Confidence 788899999999865
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=5e-18 Score=135.99 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=162.3
Q ss_pred CccceeEEEEcCCCCEEE-EeeCCCcEEEEecCCCceee-eeeecCCCCCeeEEEEcCCCCEEEEec-CCCcEEEEEecC
Q 023500 2 HTRTVRSCAWSPSGKLLA-TASFDATTCIWEDVGGDYEC-VATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMP 78 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~-tg~~d~~i~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~ 78 (281)
|.+.+..++|+|||++|+ ++..|+.|++|+........ ......+......++|+|||++|++++ .++++.+|+...
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~ 114 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED 114 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence 456789999999999884 55568999999876543211 112223455677899999999988887 477899998865
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCE
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 157 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 157 (281)
..... ......+...+.++.++|+++.++.++.+ ..+.+|+............... .......+..+.|++++..
T Consensus 115 ~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~g~~p~~i~~~~~~~~ 190 (333)
T d1ri6a_ 115 GLPVG-VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---TTVEGAGPRHMVFHPNEQY 190 (333)
T ss_dssp TEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---ECSTTCCEEEEEECTTSSE
T ss_pred cccee-cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee---eeecCCCccEEEEecccee
Confidence 54322 23344566678899999999987777654 5788987755432111111111 1123345678999999887
Q ss_pred EEEe-eCCCcEEEEeCCccccccCCCCcccceeEEeec--ccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcC
Q 023500 158 LVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLID 232 (281)
Q Consensus 158 l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~ 232 (281)
++.. ...+...+|+........ ........... ........+.+++++ +++++..++.+.+|.......
T Consensus 191 ~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (333)
T d1ri6a_ 191 AYCVNELNSSVDVWELKDPHGNI----ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-- 264 (333)
T ss_dssp EEEEETTTTEEEEEESSCTTSCC----EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--
T ss_pred EEeeccccCceEEEeecccccce----eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC--
Confidence 6554 456677788654221110 00000000000 012233445566654 566677788888886643211
Q ss_pred CccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 233 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 233 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
. .. ......+...++.++|+|+|+.++++++.++.|++|++.
T Consensus 265 --~-~~-~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 265 --V-LS-KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp --C-EE-EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --E-EE-EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 1 11 111122345678899999999888888888999999764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=1.6e-18 Score=144.69 Aligned_cols=161 Identities=9% Similarity=-0.055 Sum_probs=115.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeee---eeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV---ATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~ 79 (281)
..+..++|+|||+++++++.|+.+.+||..+++...+ ....+|.+.+.+..|+|||++| ++++.+++|++||....
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~ 141 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence 3578999999999999999999999999876553323 3334566777777889999975 78889999999998765
Q ss_pred CeeEEeEeecC-----------CccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEE
Q 023500 80 NEFECVSVLQG-----------HAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 147 (281)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 147 (281)
+. +..+.. +......+.++|++..+ ++.+.++.|.+|+...... ..+..+ .+...+.
T Consensus 142 ~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~---~~~~~i-----~~g~~~~ 210 (432)
T d1qksa2 142 EP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN---LKTTEI-----SAERFLH 210 (432)
T ss_dssp CE---EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---EEEEEE-----ECCSSEE
T ss_pred cc---eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc---ceEEEE-----cccCccc
Confidence 53 222222 34455678889988864 6677789999998765321 111222 1335678
Q ss_pred EEEEccCCCEEEEeeC-CCcEEEEeCCcc
Q 023500 148 ALSFNAKGDKLVSCSD-DLTIKIWGADIT 175 (281)
Q Consensus 148 ~~~~~~~~~~l~s~~~-d~~i~~w~~~~~ 175 (281)
.++|+|+++++++++. +..+.++|.+..
T Consensus 211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 211 DGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cceECCCCCEEEEeccccceEEEeecccc
Confidence 9999999997766654 557888886543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=4.8e-18 Score=136.53 Aligned_cols=153 Identities=5% Similarity=0.007 Sum_probs=100.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeE
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVS 86 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~ 86 (281)
++|++++++|++++.|++|.+||..+++ .+.++. +|.....+++|+|||+++ ++++.++.|.+||+..++......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCC--EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 4789999999999999999999998874 455555 456677899999999986 666789999999997665322111
Q ss_pred eec---CCccceeEEEecCCCCeEEEEe------------cCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEE
Q 023500 87 VLQ---GHAQDVKMVQWHPTMDVLFSCS------------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 151 (281)
Q Consensus 87 ~~~---~~~~~v~~v~~~p~~~~l~s~s------------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (281)
... .+...+..+.|+|++..++.++ .+..+.+|+...... ...+... ..+..+..+.+
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~ 152 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTF--PMPRQVYLMRA 152 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEE--ECCSSCCCEEE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-----eeEEEee--eccCceEEEEe
Confidence 111 1223466889999999887665 466777776554321 1111100 01123444566
Q ss_pred ccCCCEEEEeeCCCcEEEEeCC
Q 023500 152 NAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 152 ~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
++++..++++ +.+.+|+..
T Consensus 153 ~~~~~~~~~~---~~~~~~~~~ 171 (346)
T d1jmxb_ 153 ADDGSLYVAG---PDIYKMDVK 171 (346)
T ss_dssp CTTSCEEEES---SSEEEECTT
T ss_pred cCCCEEEEeC---CcceEEEcc
Confidence 6666655543 346677654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=9.9e-17 Score=133.68 Aligned_cols=191 Identities=10% Similarity=-0.008 Sum_probs=131.3
Q ss_pred EEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCee--EEeEeecCCccc
Q 023500 17 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF--ECVSVLQGHAQD 94 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~--~~~~~~~~~~~~ 94 (281)
++++.+.||.|.|||..+++ ++..+..+ ..+..++|||||++|++++.|+++++||+...+.. ..+.....|...
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~--v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYE--IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp EEEEETTTTEEEEEETTTCC--EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCc--EEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 46899999999999998875 46677666 46899999999999999999999999998765422 223334456667
Q ss_pred eeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeee-------ccCCccccEEEEEEccCCCEE-EEeeCCC
Q 023500 95 VKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISE-------SNNGHSSTIWALSFNAKGDKL-VSCSDDL 165 (281)
Q Consensus 95 v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~l-~s~~~d~ 165 (281)
+.++.|+|+++++ ++++.+++|++||.+.... +..+.. ....+......+.++|++..+ ++...++
T Consensus 111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred EEecccCCCCCEEEEEcCCCCeEEEEeCccccc-----eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 7778899999975 7888899999999876431 111110 001234556788999998764 5667789
Q ss_pred cEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecc
Q 023500 166 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVES 226 (281)
Q Consensus 166 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~ 226 (281)
.+.+|+....+. .....+ .....+..+.++|++. +++...++.+.+++..
T Consensus 186 ~i~~~d~~~~~~---------~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 186 KILLVDYTDLNN---------LKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp EEEEEETTCSSE---------EEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred eEEEEEccCCCc---------ceEEEE--cccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 999998653221 111111 1345567888999874 3333345566666543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.1e-16 Score=125.35 Aligned_cols=248 Identities=9% Similarity=0.059 Sum_probs=152.0
Q ss_pred EEEEeeCCCcEEEEecCCC-ceeeeeeecCCCCCeeEEEEcCCCCEEE-EecCCCcEEEEEecCCCeeEEeEeecCCccc
Q 023500 17 LLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 94 (281)
Q Consensus 17 ~l~tg~~d~~i~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 94 (281)
.+++++.|++|++|+.... ....+..+ .|.+.+..++|+|||++|+ +++.|+.|++|++..............+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 4678889999999997543 33333443 4889999999999999884 5566899999999755422111112223445
Q ss_pred eeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeC-CCcEEEEeC
Q 023500 95 VKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGA 172 (281)
Q Consensus 95 v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~~w~~ 172 (281)
+..++|+|+++++++++. ++++.+|+.+.... ..... ...+...+.++.++|++++++.++. +..+.+|+.
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-----~~~~~--~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----VGVVD--VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----EEEEE--EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccc-----eeccc--ccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence 778999999999888875 66888886654321 11111 1234566778999999998777664 456888875
Q ss_pred CccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccceeeee--eccCCCC
Q 023500 173 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLK--KEKAHDM 248 (281)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~ 248 (281)
....... .................+.+++++. +.+....+...++......... ........ .......
T Consensus 158 ~~~~~~~------~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 230 (333)
T d1ri6a_ 158 SDDGHLV------AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-ECVQTLDMMPENFSDTR 230 (333)
T ss_dssp CTTSCEE------EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-EEEEEEECSCTTCCSCC
T ss_pred ccCCcce------eeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-eeeeeeeeeecCCCccc
Confidence 4221100 0001111111233446677777653 3444455566666543221110 00001111 1122334
Q ss_pred CeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 249 DVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 249 ~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
....++++++++.+++.+..++.+.+|++..
T Consensus 231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 231 WAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 5677899999988888888899999998754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.74 E-value=1.3e-14 Score=113.99 Aligned_cols=222 Identities=11% Similarity=0.136 Sum_probs=145.5
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEE-EEecCCCcEEEEEecCCCeeEEeEeecCCcccee
Q 023500 18 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK 96 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~ 96 (281)
+++++.|+.|.+||..+++ .++++.. ......++|+|+|++| ++++.+++|++||+.... .+..+..+. ...
T Consensus 5 yV~~~~~~~v~v~D~~t~~--~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~---~~~~~~~~~-~~~ 77 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNK--VTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATVPAGS-SPQ 77 (301)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEEECSS-SEE
T ss_pred EEEECCCCEEEEEECCCCe--EEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---eeeeeeccc-ccc
Confidence 4678899999999998875 3555553 3556899999999987 577889999999997654 344555554 468
Q ss_pred EEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEE-EeeCCCcEEEEeCCc
Q 023500 97 MVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADI 174 (281)
Q Consensus 97 ~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~~w~~~~ 174 (281)
.+.|++++..+ +++..++.+.+|+..... ....+. +...+.++.|+|++..++ ++..++.+.+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNT-----VAGTVK-----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ccccccccccccccccccceeeecccccce-----eeeecc-----ccccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence 89999999865 556667789999776532 222232 234567899999998664 566688899998754
Q ss_pred cccccCCCCcccceeEEeecccCcceEEEEeCCCc-e-eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeE
Q 023500 175 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-I-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS 252 (281)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 252 (281)
... ..... ....+..+.+++++ . +++...++...++..... ...... .+...+..
T Consensus 148 ~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~ 204 (301)
T d1l0qa2 148 KAV-----------INTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTV-KVEAAPSG 204 (301)
T ss_dssp TEE-----------EEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ECSSEEEE
T ss_pred cce-----------eeecc--cCCCceEEEeeccccceeeecccccccccccccce---------eeeecc-cccCCcce
Confidence 321 11111 23345667777754 3 344444555556644321 111111 22345678
Q ss_pred EEEcCCCCeeEEEe--CCCCeEEEEEccc
Q 023500 253 VQWSPGERRLLASA--SDDGMIKIWELAN 279 (281)
Q Consensus 253 ~~~~~~~~~~~~s~--~~Dg~v~iw~~~~ 279 (281)
++|++++..+++++ ..++.|++||+..
T Consensus 205 ~~~~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred eeccccccccccccccceeeeeeeeecCC
Confidence 99999988765543 3457899999864
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=9.4e-15 Score=118.72 Aligned_cols=259 Identities=10% Similarity=0.013 Sum_probs=145.1
Q ss_pred CccceeEEEEcCCCCEEEEe-----eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------
Q 023500 2 HTRTVRSCAWSPSGKLLATA-----SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---------- 66 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg-----~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---------- 66 (281)
|..++..++++|||+.++.. +.++.+.+||..+++ .+..+..+... .++|+|||++|++++
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 45678899999999987654 233568888877765 35566655443 689999999998764
Q ss_pred CCCcEEEEEecCCCeeEEeE----------------------------ee----------------cCCccceeEEEecC
Q 023500 67 RDKSVWIWEVMPGNEFECVS----------------------------VL----------------QGHAQDVKMVQWHP 102 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~----------------------------~~----------------~~~~~~v~~v~~~p 102 (281)
.++.|.+||....+....+. .. ..+.....++.++|
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 174 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP 174 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence 45789999987554211100 00 01122234566777
Q ss_pred CCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeec--cCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccccc
Q 023500 103 TMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISES--NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 179 (281)
Q Consensus 103 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~ 179 (281)
++.. +++.+.|+++.+|+....... ...... ..++......+.+.+++ .++..+.++.+.+|+........
T Consensus 175 ~g~~~~v~~~~dg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 175 GAPSTFYLLCAQGGLAKTDHAGGAAG-----AGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred CCCcEEEEEcCCCeEEEEEcCCceee-----EEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEE
Confidence 7664 467788888888876543211 111100 01112223344555555 44556678888888765332111
Q ss_pred CCCCcccceeEEeecc-----------cCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCC
Q 023500 180 GDGYASWRHLCTISGY-----------HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM 248 (281)
Q Consensus 180 ~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 248 (281)
................ .+.........+...++....++.+.+|+.... . .. . ...+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-----~---~~-~-~~~~~~ 318 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-----Q---TS-S-QISLGH 318 (373)
T ss_pred EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC-----c---EE-E-EecCCC
Confidence 0000000000000000 011111122223334555666677777755432 1 11 1 113556
Q ss_pred CeeEEEEcCCCCe-eEEEeCCCCeEEEEEcccC
Q 023500 249 DVNSVQWSPGERR-LLASASDDGMIKIWELANT 280 (281)
Q Consensus 249 ~v~~~~~~~~~~~-~~~s~~~Dg~v~iw~~~~~ 280 (281)
.+..++|+|+|++ ++++++.|+.|+|||+.+.
T Consensus 319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 7899999999876 4678999999999998753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.64 E-value=8.7e-15 Score=121.54 Aligned_cols=204 Identities=10% Similarity=-0.016 Sum_probs=121.8
Q ss_pred CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec
Q 023500 59 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 138 (281)
Q Consensus 59 ~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~ 138 (281)
..++++.+.|++|++||+..++. +..+..|. .+..++|+|+++++++++.|++|++||+...... ...++. .
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~---~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~---~~~~i~-~ 103 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKI---VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---KVAEIK-I 103 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSE---EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---EEEEEE-C
T ss_pred eEEEEEEcCCCEEEEEECCCCcE---EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee---EEEEEe-C
Confidence 34578899999999999987653 55666654 5899999999999999999999999998765321 112222 2
Q ss_pred cCCccccEEEEEEccCCCEE-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce--eeecC
Q 023500 139 NNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGA 215 (281)
Q Consensus 139 ~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~ 215 (281)
..+|...+.+++|+|||+++ +++..++.+++||.............. ................+..++++. +.+..
T Consensus 104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~ 182 (426)
T d1hzua2 104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG-MTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182 (426)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE-ECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC-CCccceeecCCCceeEEEECCCCCEEEEecC
Confidence 23567777888899999976 455588999999986543211000000 000000000111122222233221 11222
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..+.+.++..... .........+...+..++|+|++++++++...+..+.+++...
T Consensus 183 ~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 238 (426)
T d1hzua2 183 ETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238 (426)
T ss_dssp TTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred CCCeEEEEEeccc--------cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence 2222222211110 0011112246677899999999988887888888899998754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=1.5e-14 Score=116.63 Aligned_cols=262 Identities=13% Similarity=0.053 Sum_probs=141.3
Q ss_pred ceeEEEEcCCCCEEEEee-----CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEe----------cCCC
Q 023500 5 TVRSCAWSPSGKLLATAS-----FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC----------GRDK 69 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~-----~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~----------~~d~ 69 (281)
++.-.+.+|||+.++... .++.+.+||..+++ .+.++..+.. ..++|+|||++|+.+ +.|+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 444456789999876543 45679999988775 3555554433 479999999988754 3478
Q ss_pred cEEEEEecCCCeeEEeEeecCC----ccceeEEEecCCCCeEEEEe--cCCeEEEEeCCCCCCCCceeee----------
Q 023500 70 SVWIWEVMPGNEFECVSVLQGH----AQDVKMVQWHPTMDVLFSCS--YDNTIKVWWAEDTDSDNWHCVQ---------- 133 (281)
Q Consensus 70 ~v~~w~~~~~~~~~~~~~~~~~----~~~v~~v~~~p~~~~l~s~s--~d~~v~~w~~~~~~~~~~~~~~---------- 133 (281)
.|++||+...+....+.....+ ......+.|+|++..++.++ .+..+.+|+.............
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 158 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCC
Confidence 9999999876543332222221 22345788999999876664 4568888987653210000000
Q ss_pred ----ee----------------------eeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccc
Q 023500 134 ----TI----------------------SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR 187 (281)
Q Consensus 134 ----~~----------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~ 187 (281)
.+ ......+...+....+.+++..++.++.++.+.+|+................
T Consensus 159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence 00 0000112222334456666667777788888888876543321110000000
Q ss_pred eeEEeecccCcceEEEEeCCCc--eeee---------cCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEc
Q 023500 188 HLCTISGYHDRTIFSVHWSREG--IIAS---------GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 256 (281)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~--~~~~---------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 256 (281)
...............+.+++++ .+++ ......+.+|+.... .. .... .+...+.+++|+
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-----~~----~~~~-~~~~~~~~~a~s 308 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-----ER----LAKF-EMGHEIDSINVS 308 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-----CE----EEEE-EEEEEECEEEEC
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC-----cE----EEEe-cCCCCEEEEEEc
Confidence 0000000000011112333332 1111 112245666754322 11 1111 123457899999
Q ss_pred CCCCe-eEEEeCCCCeEEEEEcccC
Q 023500 257 PGERR-LLASASDDGMIKIWELANT 280 (281)
Q Consensus 257 ~~~~~-~~~s~~~Dg~v~iw~~~~~ 280 (281)
|+++. ++++++.|+.|+|||..+.
T Consensus 309 pDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 309 QDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEEECCCCEEEEEECCCC
Confidence 99875 5678888999999998653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=1.4e-13 Score=109.49 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=131.7
Q ss_pred cceeEEEEcCCCCEE-EEeeCCCcEEEEecCCCceeeeeeecCCC-----CCeeEEEEcCCCCEEEEec-----------
Q 023500 4 RTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHE-----NEVKSVSWNASGTLLATCG----------- 66 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l-~tg~~d~~i~lw~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~l~s~~----------- 66 (281)
..+..++|+|||+++ ++++.++.|.+||..+++. +..+..+. ..+..++|+|+++++++++
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 346789999999976 6778899999999987753 34443332 3456889999999988776
Q ss_pred -CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC-----------------
Q 023500 67 -RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN----------------- 128 (281)
Q Consensus 67 -~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~----------------- 128 (281)
.+..+.+||..... ....+. +...+..+.|+|++..+++++.+ +.+|+........
T Consensus 112 ~~~~~~~~~d~~~~~---~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (337)
T d1pbyb_ 112 VQPTRVALYDAETLS---RRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185 (337)
T ss_dssp ECCCEEEEEETTTTE---EEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBC
T ss_pred ccccceeeccccCCe---EEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCc
Confidence 35677888876543 233333 34458899999999999987654 5667654321000
Q ss_pred c----------eeee--e-----------------e-----------eeccCCccccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 129 W----------HCVQ--T-----------------I-----------SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 129 ~----------~~~~--~-----------------~-----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
. .... . + ......+...+..+.++|++.+++.+ ++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 263 (337)
T d1pbyb_ 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEE
Confidence 0 0000 0 0 00001233445667777887777655 57899
Q ss_pred EEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEeccc
Q 023500 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK 227 (281)
Q Consensus 169 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 227 (281)
+||.+..+. ..... +...+.++.++|+| .+++++.++.+++|+...
T Consensus 264 v~d~~~~~~-----------~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 264 SFDLEKNAS-----------IKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEETTTTEE-----------EEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred EEECCCCcE-----------EEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999874432 22222 35567889999987 467888999999997753
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.44 E-value=7.5e-12 Score=104.76 Aligned_cols=114 Identities=16% Similarity=0.240 Sum_probs=81.9
Q ss_pred CccceeEEEEcCCCCEEEEeeC---------CCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEE
Q 023500 2 HTRTVRSCAWSPSGKLLATASF---------DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 72 (281)
Q Consensus 2 h~~~i~~~~~~~~~~~l~tg~~---------d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~ 72 (281)
|...|.+..|+|||++||.++. ++.+.|||..+++ +..+..|.+.+..+.|||||++||... ++.+.
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~ 135 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIY 135 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEE
T ss_pred ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCCccccccccccCcceeeEee-cccce
Confidence 4467899999999999988753 4678899988775 345677889999999999999999865 57899
Q ss_pred EEEecCCCeeEEeEe------ecC---------CccceeEEEecCCCCeEEEEecCCe-EEEE
Q 023500 73 IWEVMPGNEFECVSV------LQG---------HAQDVKMVQWHPTMDVLFSCSYDNT-IKVW 119 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~------~~~---------~~~~v~~v~~~p~~~~l~s~s~d~~-v~~w 119 (281)
+|+...+.+...... +.+ .......+.|+|+++.|+....|.+ ++.|
T Consensus 136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence 998876543221100 000 1123456789999999998876643 4444
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=1.1e-11 Score=100.37 Aligned_cols=249 Identities=12% Similarity=0.001 Sum_probs=125.8
Q ss_pred eEEEEcCCCCEEEEee----------CCCcEEEEecCCCceeeeeeecCCCC-------CeeEEEEcCCCCEEEEec-CC
Q 023500 7 RSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEGHEN-------EVKSVSWNASGTLLATCG-RD 68 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~----------~d~~i~lw~~~~~~~~~~~~~~~h~~-------~v~~v~~~~~~~~l~s~~-~d 68 (281)
..++|+|||+.|+..+ .|+.|.+||..+.+. +..+..+.. .-..++|+|||++|+.+. .+
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~--~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~ 145 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE--eeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence 4578999999887654 467899999877653 333332221 224689999999887765 67
Q ss_pred CcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEE
Q 023500 69 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 148 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 148 (281)
+.+.+||+...+. ...+..+..... +......+++.+.|+++.+++........+.. .......+...+..
T Consensus 146 ~~v~~~d~~~~~~---~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 216 (368)
T d1mdah_ 146 SAAAGLSVPGASD---DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIV---GAQCTGAQNCSSQA 216 (368)
T ss_dssp SCEEEEEETTTEE---EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEEC---CCCSCTTSCBCSCC
T ss_pred CeEEEEECCCCcE---eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeee---ecccccccccceee
Confidence 9999999976543 222322221111 11123356667778877777665433211110 11111223333445
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeCCccccccCC---CCcccceeEEeecccCcceEEEEeCCCceeeec--------CCC
Q 023500 149 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD---GYASWRHLCTISGYHDRTIFSVHWSREGIIASG--------AAD 217 (281)
Q Consensus 149 ~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~d 217 (281)
..+.+++..+.+.. +.+.+++.......... ............ ........+.......++.. ...
T Consensus 217 ~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~ 293 (368)
T d1mdah_ 217 AQANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFR-SAGFQMVAKLKNTDGIMILTVEHSRSCLAAA 293 (368)
T ss_dssp EEETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE-ECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred cccccCcEEEEecC--CCEEEEeecCCceEEEeecccccceeeeeeec-CCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence 66667765554433 33444443322111000 000000000000 00111122222212222211 111
Q ss_pred CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCe-eEEEeCCCCeEEEEEccc
Q 023500 218 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLASASDDGMIKIWELAN 279 (281)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~s~~~Dg~v~iw~~~~ 279 (281)
..+++|+.... . .. ... .+...+.+++|+|+++. ++++++.|+.|++||...
T Consensus 294 ~~v~v~D~~t~-----~---~~-~~~-~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t 346 (368)
T d1mdah_ 294 ENTSSVTASVG-----Q---TS-GPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEEEESSSC-----C---EE-ECC-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred ceEEEEECCCC-----c---Ee-EEe-cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence 24556644322 1 11 111 12345888999999864 678888999999999764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=5.3e-11 Score=95.29 Aligned_cols=204 Identities=12% Similarity=0.075 Sum_probs=120.8
Q ss_pred eeEEEEcCCCCEEEEe----------eCCCcEEEEecCCCceeeeeeecCCC-------CCeeEEEEcCCCCEEEEe--c
Q 023500 6 VRSCAWSPSGKLLATA----------SFDATTCIWEDVGGDYECVATLEGHE-------NEVKSVSWNASGTLLATC--G 66 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg----------~~d~~i~lw~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~--~ 66 (281)
+..++|+|||++|+.. +.|+.|++||..+++.. ..+..+. .....++|+|++++++.+ +
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT--ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE--EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE--EEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence 3468999999987654 34788999998877542 2322221 233568999999987665 4
Q ss_pred CCCcEEEEEecCCCeeEEeEe------------------------------------------ecCCccceeEEEecCCC
Q 023500 67 RDKSVWIWEVMPGNEFECVSV------------------------------------------LQGHAQDVKMVQWHPTM 104 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~------------------------------------------~~~~~~~v~~v~~~p~~ 104 (281)
.+..+.+|+.........+.. ...+...+....+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206 (355)
T ss_dssp SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence 567888998765432211100 00112223344566666
Q ss_pred CeEEEEecCCeEEEEeCCCCCCCCceeeeeeee------ccCCccccEEEEEEccCCCEEEEeeCC----------CcEE
Q 023500 105 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE------SNNGHSSTIWALSFNAKGDKLVSCSDD----------LTIK 168 (281)
Q Consensus 105 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~~~d----------~~i~ 168 (281)
..++.++.++.+++|+....... .+..... .....+.....+++++++..++....+ ..|.
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 283 (355)
T d2bbkh_ 207 GRLVWPTYTGKIHQIDLSSGDAK---FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 283 (355)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCE---ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CeEEEecCCCeEEEEecCCCcEE---EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence 67788888999999987654211 1110000 000011223347788888876654432 3688
Q ss_pred EEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc---eeeecCCCCcEEEEeccc
Q 023500 169 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESK 227 (281)
Q Consensus 169 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~~~~~~~~~ 227 (281)
+||....+. ...+. ....+.++.++|+| +++++..|+.+++|+...
T Consensus 284 v~d~~t~~~-----------~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 284 VLDAKTGER-----------LAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332 (355)
T ss_dssp EEETTTCCE-----------EEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCcE-----------EEEec--CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence 888764321 11221 23456788999986 356777899999997754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.34 E-value=2e-11 Score=97.09 Aligned_cols=114 Identities=5% Similarity=0.015 Sum_probs=81.2
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec-CCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCce
Q 023500 53 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWH 130 (281)
Q Consensus 53 v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~-~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~ 130 (281)
++|++++++|++++.|++|.+||+...+ .+.++. .|......+.|+|+++++ ++++.++.|++||+....
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~---~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~----- 73 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK----- 73 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-----
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCC---EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe-----
Confidence 4688999999999999999999997654 344443 455667899999999976 566688999999987642
Q ss_pred eeeeeeec--cCCccccEEEEEEccCCCEEEEee------------CCCcEEEEeCCc
Q 023500 131 CVQTISES--NNGHSSTIWALSFNAKGDKLVSCS------------DDLTIKIWGADI 174 (281)
Q Consensus 131 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~------------~d~~i~~w~~~~ 174 (281)
.+..+... ...+...+..++|+|++++++... .++.+.+|+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~ 131 (346)
T d1jmxb_ 74 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD 131 (346)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG
T ss_pred eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc
Confidence 22222211 112233456789999999887765 466677776653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.30 E-value=1e-10 Score=97.74 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=106.6
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEecCCCceeee---eeecCCCCCeeEEEEcCCCCEEEEecC---------CCcEEEEE
Q 023500 8 SCAWSPSGKLLATASFDATTCIWEDVGGDYECV---ATLEGHENEVKSVSWNASGTLLATCGR---------DKSVWIWE 75 (281)
Q Consensus 8 ~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l~s~~~---------d~~v~~w~ 75 (281)
.+.|.++++++.. .|+.+.+||..+++...+ ..+..|...|.++.|||||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4679999998764 478899999988764332 244566788999999999999988754 46788999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeec---cCC---------cc
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---NNG---------HS 143 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~---~~~---------h~ 143 (281)
+..+. ...+..+...+..+.|+|+++.++.. .++.+++|+....... .+...... ..+ ..
T Consensus 99 ~~~~~----~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~---~~t~~~~~~~~~~g~~d~~~~~~~~ 170 (470)
T d2bgra1 99 LNKRQ----LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY---RITWTGKEDIIYNGITDWVYEEEVF 170 (470)
T ss_dssp TTTTE----ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE---ECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred CCCCc----ccccccCCccccccccccCcceeeEe-ecccceEEECCCCcee---eeeeccCCCcccccccceeeeeeec
Confidence 87553 34567788889999999999999885 5778999976644210 00000000 000 12
Q ss_pred ccEEEEEEccCCCEEEEeeCCCc-EEEEe
Q 023500 144 STIWALSFNAKGDKLVSCSDDLT-IKIWG 171 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~-i~~w~ 171 (281)
.....+.|+|||+.|+....|.. ++.|.
T Consensus 171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred CCccccEECCCCCccceeEecCCcCceEE
Confidence 23456789999999999875543 55443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.27 E-value=1.1e-08 Score=80.17 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=139.7
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
.+..++++|||+++++...++.|..|+..+.. . .+-.....+.+++|+|+|+++++...++.+..++.........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-E---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 36688999999999999999999888765432 2 2233557889999999999999988888888888764432111
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeee-eccCCccccEEEEEEccCCCEEEEeeC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNAKGDKLVSCSD 163 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~ 163 (281)
...........+.+.+.++++++++.+.++.+..++........+..-.... .........+..+.++.+ .++++.+.
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~ 183 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTE 183 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETT
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCC
Confidence 1112233455788999999999999888888877766543210000000000 000111233455666433 35555667
Q ss_pred CCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeeeee
Q 023500 164 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKK 242 (281)
Q Consensus 164 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (281)
.+.|..++....... ....... .......+.++++|. +++...++.+..+....+ ...+..
T Consensus 184 ~~~i~~~~~~~~~~~--------~~~~~~~--~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--------~~~~~~ 245 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKP--------GEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--------TTIIAQ 245 (302)
T ss_dssp TTEEEEEEBCTTSCB--------CCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--------EEEEEC
T ss_pred CCeEEeccccccccc--------ccccccc--CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--------EEEEEe
Confidence 777777765422111 0011111 122234577777764 455556677777744321 111122
Q ss_pred ccCCCCCeeEEEE---cCCCCeeEEEe
Q 023500 243 EKAHDMDVNSVQW---SPGERRLLASA 266 (281)
Q Consensus 243 ~~~h~~~v~~~~~---~~~~~~~~~s~ 266 (281)
....-...++++| +++++.++++.
T Consensus 246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 246 AEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred cCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 2222345789999 66667676654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.17 E-value=1.3e-07 Score=76.06 Aligned_cols=261 Identities=10% Similarity=0.046 Sum_probs=137.0
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCC-CceeeeeeecCCCCCeeEEEEcCCCCE--EEEec-CCCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTL--LATCG-RDKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~-~d~~v~~w~~~~~ 79 (281)
..+.-++|+|++++|...+. +.+..|.... .......... .......+.++|+++. ++++. ..++|..+.+...
T Consensus 40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence 34567999999998876654 4566665432 2221111111 1233456777888874 33332 3456665554322
Q ss_pred CeeEE--------------eEeecCCccceeEEEecCCCCeEEEEec-CCeEEEEeCCCCCCCCceeeeeeeeccCCccc
Q 023500 80 NEFEC--------------VSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 144 (281)
Q Consensus 80 ~~~~~--------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~ 144 (281)
..... ..........+.++.|+|++++++++.. ...|.+|+...... ......... .....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~--~~~~~~~~~--~~~g~ 193 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE--VELVGSVDA--PDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--EEEEEEEEC--SSTTC
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc--eeeccceee--cCCCC
Confidence 11100 0111122334679999999998877664 35788886554321 111111111 11234
Q ss_pred cEEEEEEccCCCEEEE-eeCCCcEEEEeCCccccccCCCCcccceeEEeec-------------ccCcceEEEEeCCCce
Q 023500 145 TIWALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-------------YHDRTIFSVHWSREGI 210 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~ 210 (281)
.+..+.|+|++++++. ...+++|.+|+.+..+... ......... ........+.++|+|.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 267 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP------VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE------EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE------EEEeeeeccccccccccccccccccCCccceEECCCCC
Confidence 5788999999997644 5568899999875322110 000000000 0112234567788774
Q ss_pred e-eecC-CC-----CcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcC-CCCeeEEEeCCCCeEEEEEccc
Q 023500 211 I-ASGA-AD-----DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 211 ~-~~~~-~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+ .++. .+ ..+..|........ ................+.++++| +|++++++...++.|.+|++..
T Consensus 268 ~lyvsnr~~~~~~~~~i~~~~~~~~g~~---~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 268 YMFASSRANKFELQGYIAGFKLRDCGSI---EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCE---EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEEEcccCCCccceEEEEEEecCCCce---eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 2 2221 11 22555544322110 00111111222334567899998 6787888888899999998753
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.16 E-value=4.8e-09 Score=84.29 Aligned_cols=202 Identities=8% Similarity=-0.023 Sum_probs=118.3
Q ss_pred cCCCCCeeEEEEcCCCCEEEEe-----cCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEe-------
Q 023500 44 EGHENEVKSVSWNASGTLLATC-----GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS------- 111 (281)
Q Consensus 44 ~~h~~~v~~v~~~~~~~~l~s~-----~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s------- 111 (281)
..+.+++.+++++|+|++++.. +.++.|.+||...++. +..+..+.. ..+.|+|++.++++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~---~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~ 91 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---LGHVNGGFL--PNPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE---EEEEeCCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence 4578899999999999988654 2345788888776653 334444433 3689999999988765
Q ss_pred ---cCCeEEEEeCCCCCCCCceeeeeeeeccCCc----cccEEEEEEccCCCEEEEe--eCCCcEEEEeCCccccccCCC
Q 023500 112 ---YDNTIKVWWAEDTDSDNWHCVQTISESNNGH----SSTIWALSFNAKGDKLVSC--SDDLTIKIWGADITRMQSGDG 182 (281)
Q Consensus 112 ---~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~--~~d~~i~~w~~~~~~~~~~~~ 182 (281)
.++.|.+||..... .+..+.... .. ......+.|+++++.++.. ..++.+.+|+....+..
T Consensus 92 ~~~~~~~v~v~D~~t~~-----~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---- 161 (373)
T d2madh_ 92 KGKRTDYVEVFDPVTFL-----PIADIELPD-APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---- 161 (373)
T ss_pred ccccceEEEEEECCCCc-----EEEEEecCC-cceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----
Confidence 46789999887543 111111100 00 0112457888888865554 34567778876532211
Q ss_pred CcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEecccCCCcCCccceeeeee--ccCCCCCeeEEEEcCC
Q 023500 183 YASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK--EKAHDMDVNSVQWSPG 258 (281)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~ 258 (281)
. +.....++.+++++ .+++.+.|+.+.+|+....... ...... ...+........+.++
T Consensus 162 -------~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T d2madh_ 162 -------Q-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG-----AGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred -------E-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee-----EEEeeeccccCccceeeeEEECCC
Confidence 0 11223344555544 5678889999999976543211 111111 1112222344556654
Q ss_pred CCeeEEEeCCCCeEEEEEccc
Q 023500 259 ERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 259 ~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
+ .++..+.++.+++|+...
T Consensus 225 ~--~~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 225 G--RIVWPVYSGKILQADISA 243 (373)
T ss_pred c--eEEEecCCceEEEEEcCC
Confidence 3 345667788888888653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.09 E-value=5.6e-09 Score=85.17 Aligned_cols=251 Identities=8% Similarity=-0.040 Sum_probs=134.4
Q ss_pred ccceeEEEEcCCCCEEEEe-eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCE--EEEecCCCcE--------
Q 023500 3 TRTVRSCAWSPSGKLLATA-SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSV-------- 71 (281)
Q Consensus 3 ~~~i~~~~~~~~~~~l~tg-~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~~d~~v-------- 71 (281)
........++|||++|... ..++.|.++|..+.+...+.. -++......++|+|+|+. ++..+.+ .+
T Consensus 71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~ 148 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTD 148 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSC
T ss_pred CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCC-cccccCcccc
Confidence 3445556678999987544 566789999988775432222 245678899999999984 4444433 22
Q ss_pred ----------EEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe-EEEEeCCCCC---------------
Q 023500 72 ----------WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTD--------------- 125 (281)
Q Consensus 72 ----------~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~-v~~w~~~~~~--------------- 125 (281)
..+|....... ..+.. ......+.++|++.++++++.+.. +..++.....
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~---~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~ 224 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVA---WQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEE---EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred cccccccceEEeecCccceee---EEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence 22443322211 11111 234678999999999888776531 1111000000
Q ss_pred ------------C--------CCceeeeeeeeccCCccccEEEEEEccCCCEE-EEeeCCCcEEEEeCCccccccCCCCc
Q 023500 126 ------------S--------DNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYA 184 (281)
Q Consensus 126 ------------~--------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~~w~~~~~~~~~~~~~~ 184 (281)
. .....+..+.. ...+..+.++|||+++ +++..++++.+||++...........
T Consensus 225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv-----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~ 299 (441)
T d1qnia2 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV-----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE 299 (441)
T ss_dssp HHHTTCCBCCTTCCCCEEECSSSCSSEEEECC-----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC
T ss_pred EecCCCEEEeCCCCcEEEEcccCCceEEEEeC-----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC
Confidence 0 00001111211 1335678999999976 56778999999997643221111111
Q ss_pred ccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCC-cCCccceeeeee-----ccCCCCCeeEEEEcC
Q 023500 185 SWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDL-IDGPSYKMLLKK-----EKAHDMDVNSVQWSP 257 (281)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~h~~~v~~~~~~~ 257 (281)
.+................+|+++|. +.+...|..+..|.+..... ..+......... ..+|...+.+.+++|
T Consensus 300 -~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p 378 (441)
T d1qnia2 300 -LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA 378 (441)
T ss_dssp -GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred -cceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence 1111000000112234557888775 56677899999997642100 000000111111 135666677778999
Q ss_pred CCCeeEEEe
Q 023500 258 GERRLLASA 266 (281)
Q Consensus 258 ~~~~~~~s~ 266 (281)
+|++ |+++
T Consensus 379 dGk~-l~s~ 386 (441)
T d1qnia2 379 DGKW-LVVL 386 (441)
T ss_dssp CCCE-EEEE
T ss_pred CCcE-EEec
Confidence 9875 5677
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.03 E-value=4.6e-07 Score=71.11 Aligned_cols=249 Identities=6% Similarity=0.053 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCEEEEeeC-------CCcEEEEecCCCceeeeeee--cCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEe
Q 023500 6 VRSCAWSPSGKLLATASF-------DATTCIWEDVGGDYECVATL--EGHENEVKSVSWNASGTLLATCGRDKSVWIWEV 76 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~-------d~~i~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~ 76 (281)
.-..+|+|+|+++++... ++.|..||..++........ ....+.-..+.|.+++++++.+...+.+...+.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 346789999998876432 35687888777654322211 111123457999999998887776677777775
Q ss_pred cCCCeeEEeEe-ecCC-ccceeEEEecCCCCeEEEEecCC-------------eEEEEeCCCCCCCCceeeeeeeeccCC
Q 023500 77 MPGNEFECVSV-LQGH-AQDVKMVQWHPTMDVLFSCSYDN-------------TIKVWWAEDTDSDNWHCVQTISESNNG 141 (281)
Q Consensus 77 ~~~~~~~~~~~-~~~~-~~~v~~v~~~p~~~~l~s~s~d~-------------~v~~w~~~~~~~~~~~~~~~~~~~~~~ 141 (281)
... ....... ..+. -...+.+.+.|++++.++-.... .=++|.+.... .. ..+..
T Consensus 100 ~g~-~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~~---~~~~~---- 169 (314)
T d1pjxa_ 100 DGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG--QM---IQVDT---- 169 (314)
T ss_dssp TSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS--CE---EEEEE----
T ss_pred CCc-EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC--ce---eEeeC----
Confidence 422 1111100 1111 11256789999998888743211 11233222111 00 11110
Q ss_pred ccccEEEEEEccCCC-----EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecC
Q 023500 142 HSSTIWALSFNAKGD-----KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGA 215 (281)
Q Consensus 142 h~~~v~~~~~~~~~~-----~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 215 (281)
.-...+.++|+|+++ ++++-+..+.|..|++...... ...+....+..........++++.+|. +++..
T Consensus 170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-----~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-----ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-----EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc-----ceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence 112346789988764 4444556777877765421100 000111111111222345677777764 45555
Q ss_pred CCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 216 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 216 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
..+.+..|+...... ..........+++++|.|+++.++++.+.+|.|.-.++.
T Consensus 245 ~~g~I~~~dp~~g~~---------~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 245 GSSHIEVFGPDGGQP---------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTTEEEEECTTCBSC---------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCEEEEEeCCCCEE---------EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 667788886543211 111122335688999999887788999989988777754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=2.5e-06 Score=64.79 Aligned_cols=234 Identities=9% Similarity=0.039 Sum_probs=134.1
Q ss_pred eeEEEEcCCCCEEEEe-eCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEE
Q 023500 6 VRSCAWSPSGKLLATA-SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 84 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg-~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~ 84 (281)
-..++++++|+++++. +..+.+..++..... .......+. ..-..++++++|+.+++....+.+++++-.... .
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~---~ 90 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---T 90 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---E
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccce---e
Confidence 3688999999976654 445667776554332 122222322 234678999999988887777776655432221 1
Q ss_pred eEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCC
Q 023500 85 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 164 (281)
Q Consensus 85 ~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 164 (281)
.... ........+++.++++++++-..+..+..++...... ..... .....+..+++++++..+++...+
T Consensus 91 ~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~-----~~~~~p~~i~~~~~g~~~v~~~~~ 160 (260)
T d1rwia_ 91 VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPF-----TGLNDPDGVAVDNSGNVYVTDTDN 160 (260)
T ss_dssp ECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCC-----CSCCSCCEEEECTTCCEEEEEGGG
T ss_pred eeee-eeeeecccccccccceeEeecccccccccccccccee----eeeee-----cccCCcceeeecCCCCEeeecccc
Confidence 1111 2234568899999998888776677777664433210 01100 111334678999999888888888
Q ss_pred CcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCccceeeeeec
Q 023500 165 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 243 (281)
Q Consensus 165 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (281)
+.|..++.+..... ......-.....+++++++ ++++...++.+..+...... .... .
T Consensus 161 ~~i~~~d~~~~~~~------------~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-------~~~~--~ 219 (260)
T d1rwia_ 161 NRVVKLEAESNNQV------------VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-------STVL--P 219 (260)
T ss_dssp TEEEEECTTTCCEE------------ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-------CEEC--C
T ss_pred ccccccccccceee------------eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-------EEEE--c
Confidence 88888876532211 1111112334567777765 45555556667666443211 0111 1
Q ss_pred cCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEE
Q 023500 244 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 276 (281)
Q Consensus 244 ~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~ 276 (281)
...-.....+++++++ .++++-..++.|+.++
T Consensus 220 ~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLT 251 (260)
T ss_dssp CCSCCCEEEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred cCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEe
Confidence 1122356789999987 4777766677766544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.81 E-value=2.8e-06 Score=69.04 Aligned_cols=244 Identities=10% Similarity=0.056 Sum_probs=131.2
Q ss_pred EEEeeCCCcEEEEecCCCceeeeeee------------------------------cCCCCCeeEEEEcCCCCEEE-Eec
Q 023500 18 LATASFDATTCIWEDVGGDYECVATL------------------------------EGHENEVKSVSWNASGTLLA-TCG 66 (281)
Q Consensus 18 l~tg~~d~~i~lw~~~~~~~~~~~~~------------------------------~~h~~~v~~v~~~~~~~~l~-s~~ 66 (281)
+++|+.+|.+++|+....+. ++.+ ..|........++|||++|+ +..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~--l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRE--LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEE--EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCCCCcE--EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 67899999999999755431 1111 11334445555689999875 556
Q ss_pred CCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEE------------------EeCCCCCCC
Q 023500 67 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKV------------------WWAEDTDSD 127 (281)
Q Consensus 67 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~------------------w~~~~~~~~ 127 (281)
.+.+|.++|+...+..+.+. ..+......++|+|+++.+ +++..+..+.+ +|.+...
T Consensus 92 ~~~rVavIDl~t~k~~~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~-- 167 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD-- 167 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEE--CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS--
T ss_pred CCCEEEEEECCCCcEeeEEe--cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce--
Confidence 78899999997665332221 2345678899999998842 33333333322 3322211
Q ss_pred CceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC-cE--------------EEEeCC-------cccccc--CCCC
Q 023500 128 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TI--------------KIWGAD-------ITRMQS--GDGY 183 (281)
Q Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i--------------~~w~~~-------~~~~~~--~~~~ 183 (281)
...++.. ...+..+.|+|+++++++.+.+. .+ .+.+.. -++... ..+.
T Consensus 168 ---v~~qI~v-----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v 239 (441)
T d1qnia2 168 ---VAWQVIV-----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV 239 (441)
T ss_dssp ---EEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred ---eeEEEec-----CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence 1111111 12356789999999877765442 22 111100 000000 0000
Q ss_pred ------cccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCC-cCCc-cceeeeeeccCCCCCeeEE
Q 023500 184 ------ASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDL-IDGP-SYKMLLKKEKAHDMDVNSV 253 (281)
Q Consensus 184 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~h~~~v~~~ 253 (281)
........+.. ......+..+|+|. ++++..++++.+|+..+... +.+. .....+.-+....-.....
T Consensus 240 ~vvd~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~ 317 (441)
T d1qnia2 240 PVVDGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHT 317 (441)
T ss_dssp CEEECSSSCSSEEEECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEE
T ss_pred EEEEcccCCceEEEEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccc
Confidence 00011111111 12234466777764 56788899999998764211 1111 0011111111122234567
Q ss_pred EEcCCCCeeEEEeCCCCeEEEEEcc
Q 023500 254 QWSPGERRLLASASDDGMIKIWELA 278 (281)
Q Consensus 254 ~~~~~~~~~~~s~~~Dg~v~iw~~~ 278 (281)
+|.+++ +.+.+...|..|..|++.
T Consensus 318 ~fd~~g-~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 318 TFDGRG-NAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EECSSS-EEEEEETTTTEEEEEEHH
T ss_pred eecCCc-eEEEcccccceEEEeccc
Confidence 899976 578899999999999974
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=1.1e-07 Score=76.37 Aligned_cols=154 Identities=10% Similarity=-0.066 Sum_probs=90.1
Q ss_pred cceeEEEEcCCCCE---EEEeeCCCc--EEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----------CC
Q 023500 4 RTVRSCAWSPSGKL---LATASFDAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RD 68 (281)
Q Consensus 4 ~~i~~~~~~~~~~~---l~tg~~d~~--i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d 68 (281)
.....++..++++. .++...++. +.+||..+++ .+..+.++... .++|+|||+.|+.++ .|
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~--~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV--TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCc--EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 34455566778874 233455565 4455766664 34555544443 589999999887643 47
Q ss_pred CcEEEEEecCCCeeEEeEeec----CCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCCCCCCceeeeeeeeccCCcc
Q 023500 69 KSVWIWEVMPGNEFECVSVLQ----GHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 143 (281)
Q Consensus 69 ~~v~~w~~~~~~~~~~~~~~~----~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~ 143 (281)
++|++||....+....+..-. ........+.|+|++++++.+. .++.+.+||+.... ....+.. +.
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-----~~~~~~~----~~ 166 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-----DDQLTKS----AS 166 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-----EEEEEEC----SS
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-----EeEEeec----cC
Confidence 789999987665432221100 0112234689999999887776 56899999887642 2222221 11
Q ss_pred ccEEEEEEccCCCEEEEeeCCCcEEEEeCC
Q 023500 144 STIWALSFNAKGDKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 144 ~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~ 173 (281)
... .+......++..+.||.+.+++..
T Consensus 167 ~~~---~~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 167 CFH---IHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CCC---CEEEETTEEECCCCTTSCEEEECC
T ss_pred cce---EccCCCceEEEEcCCCCEEEEEec
Confidence 100 011123456666777777777654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.73 E-value=2.1e-05 Score=62.68 Aligned_cols=171 Identities=11% Similarity=0.083 Sum_probs=96.8
Q ss_pred CeeEEEEcCCCCEEEEec-CCCcEEEEEecCCCeeEEeEee--cCCccceeEEEecCCCCeEEEEe-cCCeEEEEeCCCC
Q 023500 49 EVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVL--QGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDT 124 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~-~d~~v~~w~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~l~s~s-~d~~v~~w~~~~~ 124 (281)
.+.++.|+|+|+++++++ ....|.+|+............. .......+.+.|+|++++++... .+++|.+|+.+..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 478999999999877664 3457888887544332222221 22345678899999999775544 5789999988654
Q ss_pred CCCCceeeeeeeec----------cCCccccEEEEEEccCCCEEEEeeC------CCcEEEEeCCccccccCCCCcccce
Q 023500 125 DSDNWHCVQTISES----------NNGHSSTIWALSFNAKGDKLVSCSD------DLTIKIWGADITRMQSGDGYASWRH 188 (281)
Q Consensus 125 ~~~~~~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~l~s~~~------d~~i~~w~~~~~~~~~~~~~~~~~~ 188 (281)
.............. ...+......+.++|++++|++..+ .+.|..|+...... . .+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~------~-~~~ 298 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS------I-EKQ 298 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC------E-EEE
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc------e-eeE
Confidence 32222122211110 0122344567899999998877642 12355564431100 0 011
Q ss_pred eEEee-cccCcceEEEEeCC-Cc--eeeecCCCCcEEEEecc
Q 023500 189 LCTIS-GYHDRTIFSVHWSR-EG--IIASGAADDSVQFFVES 226 (281)
Q Consensus 189 ~~~~~-~~~~~~v~~~~~~~-~~--~~~~~~~d~~~~~~~~~ 226 (281)
..... .........+.++| +| ++++...++.+.+|...
T Consensus 299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 11110 01123345577776 44 45566677889999654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.71 E-value=2.3e-06 Score=66.53 Aligned_cols=206 Identities=9% Similarity=-0.021 Sum_probs=123.2
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCC
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN 128 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~ 128 (281)
.+..+++.|||+++++...+++|..|+- ..+.. .+......+.+++|.|+++++++...++.+..++.......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p--~g~~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~- 102 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITP--DGNQQ---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT- 102 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT--TCCEE---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeC--CCCEE---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc-
Confidence 4678999999999999998998766653 33322 22334456899999999999999888888887765433211
Q ss_pred ceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEeCCcccccc--CCCCcccceeEEeecccCcceEEEEeC
Q 023500 129 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS--GDGYASWRHLCTISGYHDRTIFSVHWS 206 (281)
Q Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (281)
...+... .....++.+.+.+++.++++-+.++.+..++........ ..... .. ............+.++
T Consensus 103 ---~~~~~~~--~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~ngi~~~ 173 (302)
T d2p4oa1 103 ---VETLLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML--AR--SNSESVFPAANGLKRF 173 (302)
T ss_dssp ---EEEEEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG--SC--SSTTCCSCSEEEEEEE
T ss_pred ---eeecccc--CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc--ce--eeccCccccccccccc
Confidence 1111111 123457889999999888887878877777654321100 00000 00 0000011223445566
Q ss_pred CCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEc
Q 023500 207 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 277 (281)
Q Consensus 207 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~ 277 (281)
.+.++.+...++.+..++.......... .... .......+++.++|. ++++...++.|..++.
T Consensus 174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~---~~~~----~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p 236 (302)
T d2p4oa1 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIFV----EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAP 236 (302)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCC---EEEE----ESCCCSSEEEBTTCC-EEEECBTTCCEEEECT
T ss_pred CCceeeecCCCCeEEecccccccccccc---cccc----CCCCCcceEECCCCC-EEEEEcCCCcEEEECC
Confidence 6677777777888777765443221111 1111 122356689999875 6767777788877764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=3e-05 Score=58.55 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=84.5
Q ss_pred cceeEEEEcCCCCEEEEeeCCC---cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCcEEEEEecCC
Q 023500 4 RTVRSCAWSPSGKLLATASFDA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPG 79 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~---~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~~w~~~~~ 79 (281)
..+..-+|||||+.||-....+ .+.+.+..+... ..+..+.+......|+|+|..++..+. ++...++.....
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence 4456789999999988654433 344555554443 233456788889999999998876543 333333333222
Q ss_pred CeeEEeEeecCCccceeEEEecCCCCeE-EEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE
Q 023500 80 NEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 158 (281)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 158 (281)
... ... ............++++...+ ++...++...+|........ . ..+ ..+........|+|+++.+
T Consensus 116 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~---~~~----~~~~~~~~~~~~spdg~~~ 185 (269)
T d2hqsa1 116 SGQ-IRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-P---QRI----TWEGSQNQDADVSSDGKFM 185 (269)
T ss_dssp TCC-EEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-C---EEC----CCSSSEEEEEEECTTSSEE
T ss_pred ccc-cee-eeeccccccccccccccccceecccccCCceEeeeeccccc-c---eee----eccccccccccccccccee
Confidence 211 111 22233334455677776654 44445565555533221111 0 111 1233456677899999877
Q ss_pred EEeeC-CCcEEEEe
Q 023500 159 VSCSD-DLTIKIWG 171 (281)
Q Consensus 159 ~s~~~-d~~i~~w~ 171 (281)
+..+. .+...+|.
T Consensus 186 ~~~~~~~~~~~i~~ 199 (269)
T d2hqsa1 186 VMVSSNGGQQHIAK 199 (269)
T ss_dssp EEEEECSSCEEEEE
T ss_pred EEEeecCCceeeeE
Confidence 76554 44555553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.53 E-value=8.1e-05 Score=56.79 Aligned_cols=237 Identities=12% Similarity=0.123 Sum_probs=138.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec------CCCCCeeEEEEcCC-CCEEEE-ecCCCcEEEEEec
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSWNAS-GTLLAT-CGRDKSVWIWEVM 77 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~-~~~l~s-~~~d~~v~~w~~~ 77 (281)
-..++++|+|+++++-...+.|++||.... + +..+. +....-..+++.++ +..+++ .+.++.|..++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGR-F--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSC-E--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCCCC-E--EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 467899999999988777788999986543 2 22221 11112234555554 334433 3455566666532
Q ss_pred CCCeeEEeEee-cCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
+.. ...+ .........++..+++.++++....+.+.+++.+.. .+.++. ...+......+++.+++.
T Consensus 102 -g~~---~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~------~~~~~g--~~~~~~~~~~i~~d~~g~ 169 (279)
T d1q7fa_ 102 -GQF---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFG--CSKHLEFPNGVVVNDKQE 169 (279)
T ss_dssp -SCE---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEE--CTTTCSSEEEEEECSSSE
T ss_pred -ccc---eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc------eeeccc--ccccccccceeeecccee
Confidence 221 2222 223445678888999998888777788877754321 222221 123456678889999988
Q ss_pred EEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeec-ccCcceEEEEeCCCcee-eecC-CCCcEEEEecccCCCcCC
Q 023500 157 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREGII-ASGA-ADDSVQFFVESKDDLIDG 233 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~~~~-~d~~~~~~~~~~~~~~~~ 233 (281)
.+++....+.|++|+.+... ...+.. ........++.+++|.+ ++-. .+..+.+|+...
T Consensus 170 i~v~d~~~~~V~~~d~~G~~------------~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G------ 231 (279)
T d1q7fa_ 170 IFISDNRAHCVKVFNYEGQY------------LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG------ 231 (279)
T ss_dssp EEEEEGGGTEEEEEETTCCE------------EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS------
T ss_pred EEeeeccccceeeeecCCce------------eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC------
Confidence 88888888899999865321 111110 11233466778877643 3433 345677775322
Q ss_pred ccceeeeeeccCCCCCeeEEEEcCCCCeeEEEeCCCCeEEEEEccc
Q 023500 234 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 279 (281)
Q Consensus 234 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~s~~~Dg~v~iw~~~~ 279 (281)
..... +.. .........+++.|++ .++++. .+..|++|....
T Consensus 232 ~~~~~-~~~-~~~~~~p~~vav~~dG-~l~V~~-~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 232 QLISA-LES-KVKHAQCFDVALMDDG-SVVLAS-KDYRLYIYRYVQ 273 (279)
T ss_dssp CEEEE-EEE-SSCCSCEEEEEEETTT-EEEEEE-TTTEEEEEECSC
T ss_pred CEEEE-EeC-CCCCCCEeEEEEeCCC-cEEEEe-CCCeEEEEEeee
Confidence 11111 111 1222357889999987 466554 689999998653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=0.00014 Score=56.70 Aligned_cols=240 Identities=10% Similarity=0.095 Sum_probs=130.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC--CcEEEEEecCCC-ee
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD--KSVWIWEVMPGN-EF 82 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--~~v~~w~~~~~~-~~ 82 (281)
+..++|.++|+++++-...+.|..|++.++... ..+.........++|+++|+++++...+ ....++.+.... ..
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~--~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEE--EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 357899999998888778888888887665432 2223345567899999999988775433 334445443222 11
Q ss_pred EEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 83 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 83 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
........-....+.+.+.|++.++++.... +.+..++.+.. .+..+.. .-...+.++|+|+++
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~------~~~~~~~----~~~~pnGia~s~dg~ 189 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR------TVTPIIQ----NISVANGIALSTDEK 189 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC------CEEEEEE----EESSEEEEEECTTSS
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc------eeEEEee----ccceeeeeeeccccc
Confidence 1111111112346778899999877764322 12333322111 1111111 113357899999998
Q ss_pred EE-EEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc-eeeecCCCCcEEEEecccCCCcCCc
Q 023500 157 KL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 234 (281)
Q Consensus 157 ~l-~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (281)
.| ++-+..+.|..|+++...... ...................++++.+| ++++...++.+.+++....
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~----~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~------ 259 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTI----QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY------ 259 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC------
T ss_pred eEEEecccCCceEEEEEcCCCcee----ccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc------
Confidence 65 555567788888764211000 00000000000011224457777776 4556567788888865321
Q ss_pred cceeee--eeccCCCCCeeEEEEcCCCCeeEEEeC
Q 023500 235 SYKMLL--KKEKAHDMDVNSVQWSPGERRLLASAS 267 (281)
Q Consensus 235 ~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~s~~ 267 (281)
....+. .....+...+++++|.+....++++.+
T Consensus 260 ~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 260 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 111111 112245556889999987666665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.47 E-value=4.7e-05 Score=57.52 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEe
Q 023500 6 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV 85 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~ 85 (281)
...++++++|+++++....+.+++++..+.. .+....+ .....++++.++++++++-..+..+..++...... ..
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~--~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~ 133 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ--TVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TV 133 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCC--EECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EE
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccce--eeeeeee-eeecccccccccceeEeecccccccccccccccee--ee
Confidence 3568899999988887766666665433332 2222222 24567999999999888766666666555432211 11
Q ss_pred EeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCC
Q 023500 86 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL 165 (281)
Q Consensus 86 ~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 165 (281)
.. .........+++.|+++++++...++.|..++.+... ..... ...-..+..+++.+++.++++....+
T Consensus 134 ~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~------~~~~~---~~~~~~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 134 LP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN------QVVLP---FTDITAPWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp CC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC------EEECC---CSSCCSEEEEEECTTCCEEEEETTTT
T ss_pred ee-ecccCCcceeeecCCCCEeeeccccccccccccccce------eeeee---ccccCCCccceeeeeeeeeeeecCCC
Confidence 11 1122345788999999988888888889888655432 11111 12234567899999998888888788
Q ss_pred cEEEEeCC
Q 023500 166 TIKIWGAD 173 (281)
Q Consensus 166 ~i~~w~~~ 173 (281)
.|..++..
T Consensus 204 ~i~~~~~~ 211 (260)
T d1rwia_ 204 QVVKLLAG 211 (260)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 88877654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.5e-05 Score=65.82 Aligned_cols=154 Identities=11% Similarity=0.123 Sum_probs=92.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecC-CCCCeeEEEEcCCCCEEEEec---------CCCcEEEEEecC
Q 023500 9 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCG---------RDKSVWIWEVMP 78 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~---------~d~~v~~w~~~~ 78 (281)
..|.+++.++. -..+|.|.+|+..+++...+..... ....+....||||+++++... ..+...++|+..
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 45888887764 3567889999987765433222111 223667888999999877653 346778889876
Q ss_pred CCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccC-----Cc---------cc
Q 023500 79 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN-----GH---------SS 144 (281)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~-----~h---------~~ 144 (281)
+.. ..+.........+....|+|+++.++-.. ++.+.+.+..... . ++....... |. ..
T Consensus 101 ~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~--~---~~lt~~g~~~~i~nG~~d~vyeee~~~ 173 (465)
T d1xfda1 101 GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ--A---IRVVSTGKEGVIYNGLSDWLYEEEILK 173 (465)
T ss_dssp CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC--C---EEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred Cce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc--e---EEEecccCcceeeccccchhhhhhhcc
Confidence 543 22222233345567789999999887755 6677776544321 1 111110000 00 01
Q ss_pred cEEEEEEccCCCEEEEeeC-CCcEEEE
Q 023500 145 TIWALSFNAKGDKLVSCSD-DLTIKIW 170 (281)
Q Consensus 145 ~v~~~~~~~~~~~l~s~~~-d~~i~~w 170 (281)
.-.++-|||||++|+.... +..+..+
T Consensus 174 ~~~a~~WSPDgk~iaf~~~D~s~V~~~ 200 (465)
T d1xfda1 174 THIAHWWSPDGTRLAYAAINDSRVPIM 200 (465)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred ccceEEECCCCCeEEEEEeccccccee
Confidence 1246789999999888653 3444444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5e-05 Score=62.52 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=73.3
Q ss_pred cceeEEEEcCCCCEEEEee---------CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEE
Q 023500 4 RTVRSCAWSPSGKLLATAS---------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 74 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~---------~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w 74 (281)
..+....|+|||++++... ..+.+.+||..++....+.......+.+....|||||+.||-.. ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence 3566778999999877653 34678899988776555544444455666789999999987765 4667777
Q ss_pred EecCCCeeEEeEeecCCccc-----------------eeEEEecCCCCeEEEEecC-CeEEEEeC
Q 023500 75 EVMPGNEFECVSVLQGHAQD-----------------VKMVQWHPTMDVLFSCSYD-NTIKVWWA 121 (281)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~-----------------v~~v~~~p~~~~l~s~s~d-~~v~~w~~ 121 (281)
+...+...+.. ..+.... -..+-|+|+++.|+....| ..|..+.+
T Consensus 140 ~~~~~~~~~lt--~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 140 AHVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ecCCCceEEEe--cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence 66544332211 1111111 1356799999998876543 45555543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.30 E-value=0.00038 Score=53.98 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=117.2
Q ss_pred eEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeee-ecCCC-CCeeEEEEcCCCCEEEEecC-------------CCcE
Q 023500 7 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHE-NEVKSVSWNASGTLLATCGR-------------DKSV 71 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~-~~~h~-~~v~~v~~~~~~~~l~s~~~-------------d~~v 71 (281)
..++|.++|+++.++...+.+...+..+........ ..+.. ...+.+++.|+|++.++-.. ...=
T Consensus 74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G 153 (314)
T d1pjxa_ 74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence 458899999877777777778787776543222111 11111 12578999999998887432 1122
Q ss_pred EEEEecCCCeeEEeEeecCCccceeEEEecCCCC-----eEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccE
Q 023500 72 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-----VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI 146 (281)
Q Consensus 72 ~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-----~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v 146 (281)
++|.+....+.... ...-..-+.++|+|+++ ++++-+..+.|..+++........+ +.+......+....
T Consensus 154 ~v~~~~~dg~~~~~---~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 154 SIYCFTTDGQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--KVWGHIPGTHEGGA 228 (314)
T ss_dssp EEEEECTTSCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--EEEEECCCCSSCEE
T ss_pred eEEEEeecCceeEe---eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--eEEEEccccccccc
Confidence 45655433322111 11222346788988764 5566677788888776532211111 01111111122335
Q ss_pred EEEEEccCCCEEEEeeCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCc--eeeecCCCCcEEEEe
Q 023500 147 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFV 224 (281)
Q Consensus 147 ~~~~~~~~~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~~~~~~ 224 (281)
-.+++..+|.+.++....+.|..||.+.+... ..+. .......+++|.+++ ++++.+.++.+..++
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~-----------~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~ 296 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----------MRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----------EEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEE-----------EEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 67899999998888777889999987643211 1111 123456778888875 567777777777775
Q ss_pred cc
Q 023500 225 ES 226 (281)
Q Consensus 225 ~~ 226 (281)
..
T Consensus 297 ~~ 298 (314)
T d1pjxa_ 297 WQ 298 (314)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=0.00043 Score=51.90 Aligned_cols=218 Identities=9% Similarity=0.075 Sum_probs=109.3
Q ss_pred cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-CCc--EEEEEecCCCeeEEeEeecCCccceeEEEecC
Q 023500 26 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKS--VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 102 (281)
Q Consensus 26 ~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~--v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p 102 (281)
.|.|.|..+.....+ ..+...+..-+|||||+.||-... ++. +.+.+..... ...+..+........|+|
T Consensus 20 ~l~i~d~dG~~~~~l---~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~sp 92 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSP 92 (269)
T ss_dssp EEEEEETTSCSCEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECT
T ss_pred EEEEEcCCCCCcEEE---ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc----eeEEeeeecccccceecC
Confidence 466666655443323 335677888999999999875543 333 3333333222 223344566678889999
Q ss_pred CCCeEEEEecC-CeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC-EEEEeeCCCcEEEEeCCccccccC
Q 023500 103 TMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSG 180 (281)
Q Consensus 103 ~~~~l~s~s~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~~w~~~~~~~~~~ 180 (281)
++..++..+.. +...++........ .... ...........+++++. .+++...++...+|........
T Consensus 93 dg~~i~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-- 162 (269)
T d2hqsa1 93 DGSKLAFALSKTGSLNLYVMDLASGQ----IRQV----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-- 162 (269)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCC----EEEC----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--
T ss_pred CCCeeeEeeecCCccceeeccccccc----ceee----eeccccccccccccccccceecccccCCceEeeeeccccc--
Confidence 99987765543 33333322211110 0001 11122233445666655 4445556666666543221100
Q ss_pred CCCcccceeEEeecccCcceEEEEeCCCce--eeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCeeEEEEcCC
Q 023500 181 DGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 258 (281)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 258 (281)
.... ...........+++++. +.....++...++....... ... ...+........|+|+
T Consensus 163 --------~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~-----~~~----~~~~~~~~~~p~~SPD 224 (269)
T d2hqsa1 163 --------PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-----GVQ----VLSSTFLDETPSLAPN 224 (269)
T ss_dssp --------CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-----CEE----ECCCSSSCEEEEECTT
T ss_pred --------ceee-ecccccccccccccccceeEEEeecCCceeeeEeecccc-----cce----EeecCccccceEECCC
Confidence 0000 01233344556777653 33334455555554432110 011 1123345567889999
Q ss_pred CCeeEEEeCCC--CeEEEEEcc
Q 023500 259 ERRLLASASDD--GMIKIWELA 278 (281)
Q Consensus 259 ~~~~~~s~~~D--g~v~iw~~~ 278 (281)
|+.++.+.... ..|.++++.
T Consensus 225 G~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 225 GTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SSEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEEEcCCCCcEEEEEECC
Confidence 98765555433 357777764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.06 E-value=0.0011 Score=50.11 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=100.5
Q ss_pred CCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCC
Q 023500 47 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 126 (281)
Q Consensus 47 ~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~ 126 (281)
-.....+++.++|+.+++....+.+.+++.. +. .........+......+++.++++++++....+.|++++....
T Consensus 113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-- 188 (279)
T d1q7fa_ 113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-- 188 (279)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--
T ss_pred ccccceeccccCCcEEEEeeccceeeEeccC-Cc-eeecccccccccccceeeeccceeEEeeeccccceeeeecCCc--
Confidence 3455788889999988887777777776532 22 1111122345566788899999999999899999999975432
Q ss_pred CCceeeeeeeeccCCccccEEEEEEccCCCEEEEee-CCCcEEEEeCCccccccCCCCcccceeEEee-cccCcceEEEE
Q 023500 127 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDRTIFSVH 204 (281)
Q Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 204 (281)
.+.++. ..++...+..+++.++++.+++-. .+..|.+|+.+.. . ...+. .........++
T Consensus 189 ----~~~~~g--~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~-~-----------~~~~~~~~~~~~p~~va 250 (279)
T d1q7fa_ 189 ----YLRQIG--GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-L-----------ISALESKVKHAQCFDVA 250 (279)
T ss_dssp ----EEEEES--CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-E-----------EEEEEESSCCSCEEEEE
T ss_pred ----eeeeec--ccccccCCcccccccCCeEEEEECCCCcEEEEECCCCC-E-----------EEEEeCCCCCCCEeEEE
Confidence 222221 123445578899999998777644 3456888875421 1 11111 11122356677
Q ss_pred eCCCceeeecCCCCcEEEEec
Q 023500 205 WSREGIIASGAADDSVQFFVE 225 (281)
Q Consensus 205 ~~~~~~~~~~~~d~~~~~~~~ 225 (281)
..++|.++....+..+++|..
T Consensus 251 v~~dG~l~V~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 251 LMDDGSVVLASKDYRLYIYRY 271 (279)
T ss_dssp EETTTEEEEEETTTEEEEEEC
T ss_pred EeCCCcEEEEeCCCeEEEEEe
Confidence 788887777777888888844
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.03 E-value=0.0015 Score=50.55 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=93.7
Q ss_pred ceeEEEEcCCCCEEEEeeCC----CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC----CcEEEEEe
Q 023500 5 TVRSCAWSPSGKLLATASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD----KSVWIWEV 76 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d----~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~ 76 (281)
....++++++|+++++...+ +.+...+..+........-..-....+.+++.|+|++.++.... ..-.+|.+
T Consensus 83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~ 162 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 162 (319)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence 35678999999988775433 22334444443322111111112346789999999977764322 12235555
Q ss_pred cCCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCC
Q 023500 77 MPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG 155 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 155 (281)
...... +..+...-...+.++|+|+++. +++-+..+.|..++++................. ......-.+++.++|
T Consensus 163 ~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~~PdGl~vD~~G 239 (319)
T d2dg1a1 163 SPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDD 239 (319)
T ss_dssp CTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTC
T ss_pred ecccce--eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeecc-CCccceeeeeEcCCC
Confidence 433211 1111112233578999999985 566677889998887643221111111111111 112235678999999
Q ss_pred CEEEEeeCCCcEEEEeCC
Q 023500 156 DKLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 156 ~~l~s~~~d~~i~~w~~~ 173 (281)
.+.++....+.|..|+.+
T Consensus 240 ~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 240 NLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp CEEEEEETTTEEEEECTT
T ss_pred CEEEEEcCCCEEEEECCC
Confidence 988888888999999865
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.79 E-value=0.0033 Score=46.90 Aligned_cols=97 Identities=9% Similarity=0.134 Sum_probs=59.3
Q ss_pred EEcCC--CCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEec----CCCc--EEEEEecCCCe
Q 023500 10 AWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----RDKS--VWIWEVMPGNE 81 (281)
Q Consensus 10 ~~~~~--~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----~d~~--v~~w~~~~~~~ 81 (281)
..+|| |+.+|-.+ ++.|.+.|..+++.. .+..+.+.+...+|||||++|+-.. .+.. |.+.+...+..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~---~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE---EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 46899 99887554 456777787776543 4455677888899999999887442 2222 44444433332
Q ss_pred eEEeEe----ecCCccceeEEEecCCCCeEEEEe
Q 023500 82 FECVSV----LQGHAQDVKMVQWHPTMDVLFSCS 111 (281)
Q Consensus 82 ~~~~~~----~~~~~~~v~~v~~~p~~~~l~s~s 111 (281)
. .+.. ............|+|+++.++...
T Consensus 81 ~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 81 K-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp E-ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred E-EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 1 1111 111223456788999999877643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.71 E-value=0.0053 Score=46.75 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=100.7
Q ss_pred cceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeecCCC--CCeeEEEEcCCCCEEEEecCC----CcEEEEEec
Q 023500 4 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE--NEVKSVSWNASGTLLATCGRD----KSVWIWEVM 77 (281)
Q Consensus 4 ~~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d----~~v~~w~~~ 77 (281)
..+.++++.++|+++++ +.+ .+.++|..+++.+.+....... ...+.+.+.|+|++.++...+ +.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence 35678888889988765 444 5888898888765544433222 257888999999977765322 344567765
Q ss_pred CCCeeEEeEeecCCccceeEEEecCCCCe-EEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCC
Q 023500 78 PGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 156 (281)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (281)
.+..... . ..-..-+.+.|+|++.. +++-+..+.|..+++........... .......+-...+-.+++..+|.
T Consensus 137 ~g~~~~~---~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~-~~~~~~~~~~g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 137 KGKVTKL---F-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA-EVFIDSTGIKGGMDGSVCDAEGH 211 (295)
T ss_dssp TTEEEEE---E-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC-EEEEECTTSSSEEEEEEECTTSC
T ss_pred CCcEEEE---e-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccce-EEEeccCcccccccceEEcCCCC
Confidence 5432211 1 12233578899999885 56667778888887753221110000 11111112234567888999998
Q ss_pred EEEEeeCCCcEEEEeCC
Q 023500 157 KLVSCSDDLTIKIWGAD 173 (281)
Q Consensus 157 ~l~s~~~d~~i~~w~~~ 173 (281)
+.++.-..+.|..||.+
T Consensus 212 lWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDTD 228 (295)
T ss_dssp EEEEEETTTEEEEECTT
T ss_pred EEeeeeCCCceEEecCC
Confidence 77777677889999865
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.51 E-value=0.011 Score=44.99 Aligned_cols=229 Identities=10% Similarity=0.064 Sum_probs=123.8
Q ss_pred EEcC-CCCEEEEeeCCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEee
Q 023500 10 AWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 88 (281)
Q Consensus 10 ~~~~-~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~ 88 (281)
.|++ +++++.+=-..+.|.-||..+++.. +.. ....+.++++.++|.+++++ .+ -+..+|...++. ..+...
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~---~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~-~~l~~~ 96 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLHAEL 96 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEEECS
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE---CCCCcEEEEEecCCCEEEEE-eC-ccEEeeccccee-eEEeee
Confidence 4666 4455555445577888888776532 222 34567889998898877764 34 477888765542 222222
Q ss_pred cC--CccceeEEEecCCCCeEEEEecCC----eEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEE-EEe
Q 023500 89 QG--HAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSC 161 (281)
Q Consensus 89 ~~--~~~~v~~v~~~p~~~~l~s~s~d~----~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~ 161 (281)
.. ....++.+.+.|++++.++...+. .-.+|.+.... +..+.. .-...+.+.|+++++.+ ++-
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~------~~~~~~----~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK------VTKLFA----DISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE------EEEEEE----EESSEEEEEECTTSCEEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc------EEEEee----ccCCcceeeecCCCceEEEee
Confidence 11 123577888999999877654322 33444332211 111111 11235678999998855 455
Q ss_pred eCCCcEEEEeCCccccccCCCCcccceeEEeecccCcceEEEEeCCCce-eeecCCCCcEEEEecccCCCcCCccceeee
Q 023500 162 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL 240 (281)
Q Consensus 162 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
+..+.|..|+.+......... +...............+..+.+|. .++.-..+.+..|+... .. .
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~----~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G------~~----~ 232 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG------NH----I 232 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC------CE----E
T ss_pred cccceeeEeeecccccccccc----eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC------cE----e
Confidence 567788877764321110000 111111111233456677777764 44444566777775432 11 1
Q ss_pred eeccCCCCCeeEEEEc-CCCCeeEEEeCCC
Q 023500 241 KKEKAHDMDVNSVQWS-PGERRLLASASDD 269 (281)
Q Consensus 241 ~~~~~h~~~v~~~~~~-~~~~~~~~s~~~D 269 (281)
.....=...+++++|- |+...|++|.+..
T Consensus 233 ~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 233 ARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred eEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 1111112358999996 5556788876543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.94 E-value=0.005 Score=45.87 Aligned_cols=100 Identities=11% Similarity=0.200 Sum_probs=56.4
Q ss_pred EEcCC--CCEEEEecCCCcEEEEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEec-CC-----eEEEEeCCCCC
Q 023500 54 SWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN-----TIKVWWAEDTD 125 (281)
Q Consensus 54 ~~~~~--~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-d~-----~v~~w~~~~~~ 125 (281)
..+|+ |++++-.+. +.|.+.|+..++. ..+..+........|+|+++.|+-.+. ++ .|.+.+.....
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCE----EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 35788 998876554 4577778765543 234455566788999999998775432 22 24444433321
Q ss_pred CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe
Q 023500 126 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 161 (281)
Q Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 161 (281)
.+.+..................|+|+++.|+..
T Consensus 80 ---~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 80 ---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp ---EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred ---eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence 111110100001122344678899999887764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.48 E-value=0.12 Score=40.04 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=71.7
Q ss_pred EEEcCCCCEEEEeeCCC-----------cEEEEecCCCceeeeeeec-CCCCCeeEEEEcCCCCEEEEecCC-CcEEEEE
Q 023500 9 CAWSPSGKLLATASFDA-----------TTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRD-KSVWIWE 75 (281)
Q Consensus 9 ~~~~~~~~~l~tg~~d~-----------~i~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d-~~v~~w~ 75 (281)
.....+|++++.|+.+. .+.+||+.++.+.....+. +|.......++.++|.+++.|+.+ .++.+||
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 44556899998888542 2678999888765443332 333334466788999999998765 5899999
Q ss_pred ecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecC------CeEEEEeCCC
Q 023500 76 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAED 123 (281)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d------~~v~~w~~~~ 123 (281)
..... +......... ..-..+...+++.+++.++.+ ..+.+|+...
T Consensus 105 ~~~~~-w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 105 SSSDS-WIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp GGGTE-EEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CccCc-cccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 86543 2222222211 122355667788888887753 3678887654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.13 E-value=1.1 Score=35.77 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=39.1
Q ss_pred ceeEEEEcCCCCEEEEeeCCCcEEEEecCCCceeeeeeec------CCCCCeeEEEEcCC
Q 023500 5 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSWNAS 58 (281)
Q Consensus 5 ~i~~~~~~~~~~~l~tg~~d~~i~lw~~~~~~~~~~~~~~------~h~~~v~~v~~~~~ 58 (281)
.-+.++|.|+|++|++--..|.|.+++..++....+..+. .-.+....|+|+|+
T Consensus 28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 4578999999999988655788999887666554444432 12356778999985
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.86 E-value=1 Score=34.53 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=51.0
Q ss_pred eEEEEcCCCCEEEEeeCC-CcEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecCC------CcEEEEEecC
Q 023500 7 RSCAWSPSGKLLATASFD-ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMP 78 (281)
Q Consensus 7 ~~~~~~~~~~~l~tg~~d-~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~~w~~~~ 78 (281)
...++.++|++++.|+.+ ..+.+||..+..+.....+.... .-...+..++|+.++.|+.+ ..+.+||...
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 356788999999998766 58999999887765554443222 23456677899999888753 3688888754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.65 E-value=1.7 Score=34.44 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=36.6
Q ss_pred CeeEEEEcCCCCEEEEecCCCcEEEEEecCCCeeEEeEeec------CCccceeEEEecCC
Q 023500 49 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ------GHAQDVKMVQWHPT 103 (281)
Q Consensus 49 ~v~~v~~~~~~~~l~s~~~d~~v~~w~~~~~~~~~~~~~~~------~~~~~v~~v~~~p~ 103 (281)
.-++++|.|+|+++++--.+|.|++.+...+... .+..+. .-......++++|+
T Consensus 28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~-~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe-ecccCCccccccCCCCceeeEEeCCC
Confidence 4469999999999998766788888876554432 222221 11345678999996
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.00 E-value=2.8 Score=32.81 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=57.8
Q ss_pred eeEEEEcCCCCEEEEe-eCCC----cEEEEecCCCceeeeeeecCCCCCeeEEEEcCCCCEEEEecC-------------
Q 023500 6 VRSCAWSPSGKLLATA-SFDA----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR------------- 67 (281)
Q Consensus 6 i~~~~~~~~~~~l~tg-~~d~----~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------------- 67 (281)
+...+++|+++++|-+ +.+| .++++|..++++.. ..+.. .....+.|.+|+..|+-...
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-ccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence 3456789999988733 3333 58899998886532 22221 11246889999887653322
Q ss_pred ---CCcEEEEEecCCCeeEEeEeecCC--ccceeEEEecCCCCeEEE
Q 023500 68 ---DKSVWIWEVMPGNEFECVSVLQGH--AQDVKMVQWHPTMDVLFS 109 (281)
Q Consensus 68 ---d~~v~~w~~~~~~~~~~~~~~~~~--~~~v~~v~~~p~~~~l~s 109 (281)
...|+.|.+..... +....+... ...+..+..++++.+++.
T Consensus 204 ~~~~~~v~~h~lgt~~~-~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQS-EDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred cCCcceEEEEECCCCcc-ccccccccccCCceEEeeeccCCcceeeE
Confidence 12566666654332 112233332 234566778889887653
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=86.71 E-value=3.5 Score=28.37 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=73.9
Q ss_pred ccceeEEEecCCCCeEEEEecCCeEEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEEEEe
Q 023500 92 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 171 (281)
Q Consensus 92 ~~~v~~v~~~p~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~~w~ 171 (281)
=+.+.-+.|||++.+.+. ..+.++.=.+.+..+..|....+ ....+-=.....+-|+|.|- |.+.+ ++ ++|.
T Consensus 39 ~~n~~~i~fsP~G~LyaV--r~~~lY~Gp~~s~~nq~wf~~at--rIG~ggWn~FkflffdP~G~-LyaVt-~~--~LYr 110 (235)
T d1tl2a_ 39 WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK--KIGNGGWNQFQFLFFDPNGY-LYAVS-KD--KLYK 110 (235)
T ss_dssp CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE--EEECSCGGGCSEEEECTTSC-EEEEE-TT--EEEE
T ss_pred ccceeEEEECCCCcEEEE--ECCeEEECCCCCcchHHHHHhhh--hcccCcccceEEEEECCCce-EEEec-Cc--ceec
Confidence 456788999999998877 33444432233333333311111 11111123455688899984 44444 35 4552
Q ss_pred CCccccccCCCCcccce-eEEeecccCcceEEEEeCCCceeeecCCCCcEEEEecccCCCcCCccceeeeeeccCCCCCe
Q 023500 172 ADITRMQSGDGYASWRH-LCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV 250 (281)
Q Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 250 (281)
- .+...+. ..|.. ...+-...=..+..+-|+|+|++.+...++ +.-..... +..+..... .......|-...
T Consensus 111 ~---~pPtn~~-q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~~-l~k~~pP~-~~~d~WL~~-st~igr~~w~~~ 183 (235)
T d1tl2a_ 111 A---SPPQSDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQ-FYKALPPV-SNQDNWLAR-ATKIGQGGWDTF 183 (235)
T ss_dssp E---SCCCSTT-CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTE-EEEECCCS-STTCCHHHH-CEEEESSSGGGE
T ss_pred C---CcCcccc-hhhhhhhhhhccCCcCceeEEEECCCceEEEEECCc-EEEcCCCC-CCCchhhhh-hhhhccCcccCc
Confidence 1 1222221 22221 111111112344578899999988876664 44443322 111111100 111223454556
Q ss_pred eEEEEcCCCC
Q 023500 251 NSVQWSPGER 260 (281)
Q Consensus 251 ~~~~~~~~~~ 260 (281)
..+.|+|++.
T Consensus 184 ~fi~Fs~dG~ 193 (235)
T d1tl2a_ 184 KFLFFSSVGT 193 (235)
T ss_dssp EEEEECTTSC
T ss_pred eEEEECCCCc
Confidence 7899999864
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=85.91 E-value=6.6 Score=30.77 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=45.6
Q ss_pred eEEEecCCCCeEE-EEecCCeEEEEeCCCCC------CCCceeeeeeeeccCCccccEEEEEEccCCCEEEEeeCCCcEE
Q 023500 96 KMVQWHPTMDVLF-SCSYDNTIKVWWAEDTD------SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK 168 (281)
Q Consensus 96 ~~v~~~p~~~~l~-s~s~d~~v~~w~~~~~~------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 168 (281)
..+..+|++.+++ ++..+.++.+.|++..+ .....++.... ........-+|+..|.-..|.--|+.|.
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~----elglgPLht~fd~~g~aytslfids~v~ 353 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP----ELGLGPLHTAFDGRGNAYTSLFLDSQVV 353 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC----BCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec----ccCcCccccccCCCceEEEEeeccceEE
Confidence 4677899999765 56678899999986321 01111111110 0112345668888875555666899999
Q ss_pred EEeCC
Q 023500 169 IWGAD 173 (281)
Q Consensus 169 ~w~~~ 173 (281)
-|+++
T Consensus 354 kw~~~ 358 (459)
T d1fwxa2 354 KWNIE 358 (459)
T ss_dssp EEEHH
T ss_pred EEecc
Confidence 99864
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=84.36 E-value=7.9 Score=30.32 Aligned_cols=200 Identities=10% Similarity=-0.006 Sum_probs=100.8
Q ss_pred CCCEEEEee-CCCcEEEEecCCCceeeeeeecCCCCCeeEEEEcCC--CCEEEEecCCC------------------cEE
Q 023500 14 SGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDK------------------SVW 72 (281)
Q Consensus 14 ~~~~l~tg~-~d~~i~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~------------------~v~ 72 (281)
||++|.... .++.|.+-|..+.+...+..+ .....+..+...++ -.+++.++.+. .+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 678766555 556677777766543323232 34456676666544 45677666532 234
Q ss_pred EEEecCCCeeEEeEeecCCccceeEEEecCCCCeEEEEecCCe-------------------------------------
Q 023500 73 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT------------------------------------- 115 (281)
Q Consensus 73 ~w~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~d~~------------------------------------- 115 (281)
+.|....+....+ .. ......+.++|++.++++.+.+..
T Consensus 177 ~ID~~tm~V~~QV--~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 177 AVDADKWEVAWQV--LV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEETTTTEEEEEE--EE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEecCCceEEEEe--ee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 5555433322111 11 224667889999999888775421
Q ss_pred -EEEEeCCCCCCCCceeeeeeeeccCCccccEEEEEEccCCCEEEEe-eCCCcEEEEeCCccccccCCCCcccceeEEee
Q 023500 116 -IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTIS 193 (281)
Q Consensus 116 -v~~w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 193 (281)
+.+-+...... ......+.. +..+..+.++|||++++.+ ..+.++.++|++...-..............-.
T Consensus 253 gV~VVD~~~~~~--~~v~~yIPV-----pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~ 325 (459)
T d1fwxa2 253 GVKVVDGRKEAS--SLFTRYIPI-----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 325 (459)
T ss_dssp TEEEEECSGG----CSSEEEEEE-----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred CceeecccccCC--cceeEEEec-----CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence 12222111000 001111222 2334568999999976665 46889999997522111100000000000000
Q ss_pred cccCcceEEEEeCCCce-eeecCCCCcEEEEecc
Q 023500 194 GYHDRTIFSVHWSREGI-IASGAADDSVQFFVES 226 (281)
Q Consensus 194 ~~~~~~v~~~~~~~~~~-~~~~~~d~~~~~~~~~ 226 (281)
-.......-+|+.+|. +.+-.-|..+.-|.+.
T Consensus 326 -elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 326 -ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp -BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred -ccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 0122234456676664 4455577788888653
|