Citrus Sinensis ID: 023505

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
ccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccEEEEccccccccEEEcccccccEEEEHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccccc
ccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEccccccccccccccEEEEEEcccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEEccccccccccccEcccccccccccEEEEEccccccEEEEEcccccccEEEEccccccEEEEEcccHHHHHccccEEEEEEEEEEcccccEEEEEEEccccccccccEEEcc
mtealqlpvidlsspdrlsTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTAlcdeildpsstsegdpkesfyigplegtlssmnqwpsleilptwRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLhypgelvssnqevcgasahsdYGMITLLatdgvpglqvcrekfnqprlwedvpnikgALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLshlcfphsnafgck
mtealqlpvidlsspdrlSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGytalcdeildpsstsegdpkeSFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFnqprlwedvpniKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGrrlihlialalnlnEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
*********************KSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEI**************FYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAF***
*TEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDE*********GDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGE**********A*AHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
***ALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGCK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.893 0.691 0.349 2e-35
A6BM06368 1-aminocyclopropane-1-car N/A no 0.875 0.668 0.346 4e-34
Q76NT9368 1-aminocyclopropane-1-car no no 0.875 0.668 0.346 4e-34
Q7LL04321 UPF0676 protein C1494.01 yes no 0.907 0.794 0.332 2e-25
Q9C5K7369 1-aminocyclopropane-1-car no no 0.900 0.685 0.302 2e-23
Q94A78351 1-aminocyclopropane-1-car no no 0.857 0.686 0.300 1e-21
Q8H1S4369 1-aminocyclopropane-1-car no no 0.907 0.691 0.294 2e-21
Q39224358 Protein SRG1 OS=Arabidops no no 0.864 0.678 0.302 3e-21
P40902397 Sexual differentiation pr no no 0.804 0.569 0.258 2e-20
Q06588323 1-aminocyclopropane-1-car no no 0.846 0.736 0.300 2e-20
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 158/303 (52%), Gaps = 52/303 (17%)

Query: 6   QLPVIDLSSP--------DRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFF 57
           QLP+ID+ S          +   +K I  AC ++GFFY+  HG+++ELI ++   SKKFF
Sbjct: 12  QLPIIDIESYGNDKEEELKKKLISKEIENACKNFGFFYIKGHGIDQELIDRLERLSKKFF 71

Query: 58  SL----QLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIG-------PL---E 103
           SL    +++ +M+LA+K  RGY  +  E+    ++   D KE  Y+G       PL   +
Sbjct: 72  SLDQSIKMKYRMELAQKAWRGYFVVGGEL----TSGLKDWKEGLYLGTELNDDHPLVIAQ 127

Query: 104 GTLSSMNQWPSLE-----ILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVG 158
             L  +N +P+LE      +  ++ T+  Y  KV   G  L+ LIA++LNL+ D+F    
Sbjct: 128 TPLHGLNLFPTLEEEIEYDIVGFKDTILTYIDKVTKLGHSLMELIAISLNLSADYFSSRY 187

Query: 159 ALDAPMAFLRLLHYP------------GELVSSNQEV-CGASAHSDYGMITLLATDGVPG 205
             D P+   R+ +YP            GE    N +V  G   H+DYG++T+L  D V G
Sbjct: 188 TKD-PLILYRIFNYPSIISSGDDNKTTGESSDDNDKVEWGVGEHTDYGVLTILYQDDVGG 246

Query: 206 LQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTNCLFRSTLHRV--MSSGQERYSVI 263
           LQV     +    W   P IKG  + NIGDM++R T  L+RST HRV    SG++R S  
Sbjct: 247 LQV-----HSKNGWISAPPIKGTFVCNIGDMLDRMTGGLYRSTPHRVELNRSGRDRISFP 301

Query: 264 ICF 266
           + F
Sbjct: 302 LFF 304

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|Q06588|ACCO4_ARATH 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Arabidopsis thaliana GN=ACO4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
118486587310 unknown [Populus trichocarpa] 0.932 0.845 0.734 1e-113
224074187310 predicted protein [Populus trichocarpa] 0.932 0.845 0.731 1e-113
357476787322 Gibberellin 2-beta-dioxygenase [Medicago 0.925 0.807 0.694 1e-105
255581297309 Flavonol synthase/flavanone 3-hydroxylas 0.957 0.870 0.700 1e-105
388521547322 unknown [Medicago truncatula] 0.925 0.807 0.687 1e-102
356510660318 PREDICTED: probable iron/ascorbate oxido 0.943 0.833 0.670 1e-100
357476785321 Flavonol synthase/flavanone 3-hydroxylas 0.921 0.806 0.667 1e-100
7594580305 hypothetical protein [Arabidopsis thalia 0.914 0.842 0.679 4e-98
357476781313 Flavonol synthase/flavanone 3-hydroxylas 0.907 0.814 0.648 2e-96
8919875315 hypothetical protein [Capsella rubella] 0.946 0.844 0.611 5e-93
>gi|118486587|gb|ABK95132.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/264 (73%), Positives = 228/264 (86%), Gaps = 2/264 (0%)

Query: 1   MTEALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQ 60
           M E ++LP+IDLSSPDR+STAKSIRQAC+DYGFFYLVNHGVE +L+S++  ESKKFFSL 
Sbjct: 1   MAETVKLPIIDLSSPDRISTAKSIRQACVDYGFFYLVNHGVEGQLLSKVLEESKKFFSLP 60

Query: 61  LEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTL--SSMNQWPSLEIL 118
           L +KMKL+RK HRGY+ L  E LDP S SEGD KESFY+GP+EG +  +++NQWPS EI 
Sbjct: 61  LNEKMKLSRKHHRGYSPLYAENLDPLSRSEGDSKESFYVGPVEGDMAQTNLNQWPSQEIF 120

Query: 119 PTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYPGELVS 178
           P+WR TME YH+K++SAG++LI+LIA+ALNL+ED+FEKVGALD P  FLRLLHYPGEL  
Sbjct: 121 PSWRLTMESYHKKLMSAGKKLIYLIAMALNLDEDYFEKVGALDTPRGFLRLLHYPGELGC 180

Query: 179 SNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMME 238
            N+++ GAS HSDYGMITLL +DGVPGLQVCREKF QPRLWEDVP+I GA IVNIGDMME
Sbjct: 181 FNEQIYGASEHSDYGMITLLVSDGVPGLQVCREKFKQPRLWEDVPHINGAFIVNIGDMME 240

Query: 239 RWTNCLFRSTLHRVMSSGQERYSV 262
           RWTNCLFRSTLHRVM  GQERYS+
Sbjct: 241 RWTNCLFRSTLHRVMPVGQERYSL 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074187|ref|XP_002304292.1| predicted protein [Populus trichocarpa] gi|222841724|gb|EEE79271.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357476787|ref|XP_003608679.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi|355509734|gb|AES90876.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255581297|ref|XP_002531459.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223528913|gb|EEF30909.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388521547|gb|AFK48835.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510660|ref|XP_003524054.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|357476785|ref|XP_003608678.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355509733|gb|AES90875.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|7594580|emb|CAB88075.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357476781|ref|XP_003608676.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|355509731|gb|AES90873.1| Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|8919875|emb|CAB96198.1| hypothetical protein [Capsella rubella] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.718 0.817 0.643 2.3e-64
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.907 0.775 0.467 6.9e-63
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.928 0.790 0.460 1.9e-58
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.779 0.765 0.460 2.5e-49
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.718 0.804 0.429 8.4e-42
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.925 0.820 0.340 5.2e-33
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.911 0.739 0.332 1.4e-32
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.911 0.733 0.341 6e-32
DICTYBASE|DDB_G0277497368 aco "oxidoreductase" [Dictyost 0.580 0.442 0.333 7.7e-32
CGD|CAL0003707339 orf19.1306 [Candida albicans ( 0.434 0.359 0.359 7.7e-26
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 132/205 (64%), Positives = 149/205 (72%)

Query:    65 MKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSM--NQWPSLEILPTWR 122
             M L R++  GYT L  E LDPS +S GD KESFY G LEG L+    NQWPS  ILP+WR
Sbjct:     1 MALLRRDLLGYTPLYAEKLDPSLSSIGDSKESFYFGSLEGVLAQRYPNQWPSEGILPSWR 60

Query:   123 STMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAPMAFLRLLHYPGELVSSNQE 182
              TME Y++ VLS G              EDFFEKVGAL+ P A +RLL YPGE++SS+ E
Sbjct:    61 QTMETYYKNVLSVGRKLLGLIALALDLDEDFFEKVGALNDPTAVVRLLRYPGEVISSDVE 120

Query:   183 VCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDMMERWTN 242
               GASAHSDYGM+TLL TDGVPGLQVCR+K  QP +WEDVP IKGA IVNIGDMMERWTN
Sbjct:   121 TYGASAHSDYGMVTLLLTDGVPGLQVCRDKSKQPHIWEDVPGIKGAFIVNIGDMMERWTN 180

Query:   243 CLFRSTLHRVMSSGQERYSVIICFL 267
              LFRSTLHRVM  G+ERYSV+  FL
Sbjct:   181 GLFRSTLHRVMPVGKERYSVVF-FL 204
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA;ISS
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277497 aco "oxidoreductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0003707 orf19.1306 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_III0184
SubName- Full=Putative uncharacterized protein; (310 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-88
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-70
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-60
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-42
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-37
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-35
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-33
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 7e-33
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-29
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 9e-29
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-28
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-28
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 7e-26
PLN02216357 PLN02216, PLN02216, protein SRG1 9e-25
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-24
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-22
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-22
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-22
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-22
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-22
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-21
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-21
PLN02904357 PLN02904, PLN02904, oxidoreductase 5e-20
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-18
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-13
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-12
PLN02947374 PLN02947, PLN02947, oxidoreductase 8e-12
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-08
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 6e-08
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  266 bits (681), Expect = 1e-88
 Identities = 132/269 (49%), Positives = 179/269 (66%), Gaps = 18/269 (6%)

Query: 7   LPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMK 66
           L  IDL++ D   +  S++QAC+D GFFY++NHG+ EE +  +F +SKKFF+L LE+KMK
Sbjct: 15  LNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMK 74

Query: 67  LARKE-HRGYTALCDEILDPSSTSEGDPKESFYIG------------PLEGTLSSMNQWP 113
           + R E HRGYT + DE LDP +   GD KE +YIG            P  G     N WP
Sbjct: 75  VLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGP----NPWP 130

Query: 114 SLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLLHYP 173
             ++LP WR TME YHQ+ L     +  L+ALAL+L+  +F++   L  P+A +RLL Y 
Sbjct: 131 DADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQ 190

Query: 174 GELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI 233
           G +   ++ +    AHSD+GM+TLLATDGV GLQ+C++K   P+ WE VP IKGA IVN+
Sbjct: 191 G-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNL 249

Query: 234 GDMMERWTNCLFRSTLHRVMSSGQERYSV 262
           GDM+ERW+N  F+STLHRV+ +GQERYS+
Sbjct: 250 GDMLERWSNGFFKSTLHRVLGNGQERYSI 278

Length = 332
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.91
PLN03176120 flavanone-3-hydroxylase; Provisional 99.73
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 95.95
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.32
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.83
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.24
PRK08130213 putative aldolase; Validated 88.74
PRK08333184 L-fuculose phosphate aldolase; Provisional 88.11
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 87.31
PRK05874217 L-fuculose-phosphate aldolase; Validated 85.84
PRK06755209 hypothetical protein; Validated 83.19
PRK08087215 L-fuculose phosphate aldolase; Provisional 82.77
PF07350416 DUF1479: Protein of unknown function (DUF1479); In 82.41
PRK08660181 L-fuculose phosphate aldolase; Provisional 82.39
PRK06833214 L-fuculose phosphate aldolase; Provisional 82.13
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=2.3e-70  Score=483.63  Aligned_cols=277  Identities=48%  Similarity=0.866  Sum_probs=239.4

Q ss_pred             CCCCCcEEeCCCcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC-CCcccccccc
Q 023505            3 EALQLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE-HRGYTALCDE   81 (281)
Q Consensus         3 ~~~~lPvIDl~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~Gy~~~~~e   81 (281)
                      ....||+|||+..++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.... .+||.+.+.+
T Consensus        11 ~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e   90 (332)
T PLN03002         11 KVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDE   90 (332)
T ss_pred             CCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCccccc
Confidence            456899999997667778999999999999999999999999999999999999999999999986655 8999988777


Q ss_pred             ccCCCCCCCCCCceeeecC---CCCC-----CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 023505           82 ILDPSSTSEGDPKESFYIG---PLEG-----TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDF  153 (281)
Q Consensus        82 ~~~~~~~~~~d~~E~~~~~---p~~~-----~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~  153 (281)
                      ..++......|++|.|.++   |.++     .+..+|.||..+..|+|++.+++|++.|.+++..||++|+++||+++++
T Consensus        91 ~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~  170 (332)
T PLN03002         91 KLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGY  170 (332)
T ss_pred             ccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            6554332246999999987   3332     2346899998645689999999999999999999999999999999999


Q ss_pred             hcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEEeh
Q 023505          154 FEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNI  233 (281)
Q Consensus       154 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~  233 (281)
                      |.+...+..+.+.||++|||+++.+ ....+|+++|||+|+||||+||+++||||+.++...+++|++|+|.||++|||+
T Consensus       171 f~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNi  249 (332)
T PLN03002        171 FDRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNL  249 (332)
T ss_pred             hccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEEEH
Confidence            9821144556789999999998754 235789999999999999999999999998754211255999999999999999


Q ss_pred             hhhHHHHhCCcccccceeecCCCCCeEEEEeeecCCCCCCCccCCCC
Q 023505          234 GDMMERWTNCLFRSTLHRVMSSGQERYSVIICFLSHLCFPHSNAFGC  280 (281)
Q Consensus       234 Gd~l~~~T~G~~ks~~HRV~~~~~~R~S~~~f~~p~~d~~~~~~~~~  280 (281)
                      ||+|++||||+|||++|||+.++.+||||+||++|+.|++|.|+|+|
T Consensus       250 GD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~pl~~~  296 (332)
T PLN03002        250 GDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTC  296 (332)
T ss_pred             HHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEecCCcc
Confidence            99999999999999999999887799999999999999999999875

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information
>PRK08333 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PRK05874 L-fuculose-phosphate aldolase; Validated Back     alignment and domain information
>PRK06755 hypothetical protein; Validated Back     alignment and domain information
>PRK08087 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length Back     alignment and domain information
>PRK08660 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK06833 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 9e-17
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 8e-15
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-14
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-14
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 3e-13
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-12
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 5e-11
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 6e-11
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 44/263 (16%)
Query: 6   QLPVIDLSSPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKM 65
           +L  ID  + D   +AK   ++  + GF  L NH +++EL+ +++ E + FF+ + +++ 
Sbjct: 3   KLETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEF 59
Query: 66  KLARKEHRGYTALCDEILDPSSTSE-------GDPKESFYIGPLEGTLSSMNQWPSLEIL 118
              R+ H G+         P+S SE        D KE +++            +P   I 
Sbjct: 60  XFNRETHDGFF--------PASISETAKGHTVKDIKEYYHV------------YPWGRIP 99
Query: 119 PTWRSTMEYYHQKVLSAGXXXXXXXXXXXXXXEDFFEKVGALDAP-------MAFLRLLH 171
            + R+ +  Y++K   A                D  +   ++  P          LR+LH
Sbjct: 100 DSLRANILAYYEK---ANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILH 156
Query: 172 YPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIV 231
           YP            A+AH D  +IT+L T   PGLQV  +  +    W DVP+  G +I+
Sbjct: 157 YPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGS----WLDVPSDFGNIII 212
Query: 232 NIGDMMERWTNCLFRSTLHRVMS 254
           NIGD ++  ++  F ST HRV++
Sbjct: 213 NIGDXLQEASDGYFPSTSHRVIN 235
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-110
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-103
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-102
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-99
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-63
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-62
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  320 bits (822), Expect = e-110
 Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 28/277 (10%)

Query: 1   MTEALQLPVIDLS--SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFS 58
           M+ +  +  +  S  + D    A+ +  +   YGF  L ++ +++  I    + +K FF+
Sbjct: 2   MSTS-AIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFA 60

Query: 59  LQLEDKMKLARKE--HRGYTALCDEILDPSSTSEGDPKESFYIGP------LEGTLSSMN 110
           L +E K + A  +   RGY     E    +     D KE +++G             + N
Sbjct: 61  LPVETKKQYAGVKGGARGYIPFGVETAKGADH--YDLKEFWHMGRDLPPGHRFRAHMADN 118

Query: 111 QWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGALDAPMAFLRLL 170
            WP    +P ++  + + +  +   G +++  IA  L L  DFF+    +    + LRLL
Sbjct: 119 VWP--AEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKP--TVQDGNSVLRLL 174

Query: 171 HYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALI 230
           HYP   +  +     A AH D   ITLL      GL+V          W  +    G L+
Sbjct: 175 HYPP--IPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQ----WLPINPPPGCLV 228

Query: 231 VNIGDMMERWTNCLFRSTLHRVMS-----SGQERYSV 262
           +NIGDM+ER TN +  ST+HRV++      G  RYS 
Sbjct: 229 INIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYST 265
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.98
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.17
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 90.28
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 89.43
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 88.15
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 87.66
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 85.93
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 84.51
2fk5_A200 Fuculose-1-phosphate aldolase; class II aldolase, 81.58
2opi_A212 L-fuculose-1-phosphate aldolase; L-fuculose-1-phos 81.5
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=2.6e-70  Score=480.28  Aligned_cols=267  Identities=28%  Similarity=0.427  Sum_probs=235.0

Q ss_pred             CCCCCCcEEeCCC--cchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhcccc-C-CCcccc
Q 023505            2 TEALQLPVIDLSS--PDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARK-E-HRGYTA   77 (281)
Q Consensus         2 ~~~~~lPvIDl~~--~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~-~~Gy~~   77 (281)
                      |+..+||||||+.  .++.+++++|.+||++||||||+||||+.++++++++.+++||++|.|+|+++... . .+||++
T Consensus         2 m~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~   81 (312)
T 3oox_A            2 MSTSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP   81 (312)
T ss_dssp             --CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEEC
T ss_pred             CCCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccc
Confidence            3467899999984  35778899999999999999999999999999999999999999999999998763 3 899998


Q ss_pred             ccccccCCCCCCCCCCceeeecCCC---CC---CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Q 023505           78 LCDEILDPSSTSEGDPKESFYIGPL---EG---TLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNE  151 (281)
Q Consensus        78 ~~~e~~~~~~~~~~d~~E~~~~~p~---~~---~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~  151 (281)
                      .+.|......  ..|++|.|++++.   ++   ....+|.||..  +|+|++.+++|++.|.+++.+|+++|+++||+++
T Consensus        82 ~g~e~~~~~~--~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~--~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~  157 (312)
T 3oox_A           82 FGVETAKGAD--HYDLKEFWHMGRDLPPGHRFRAHMADNVWPAE--IPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLER  157 (312)
T ss_dssp             CCCCCSTTSC--SCCCCEEEEECCCCCTTCGGGGTSCCCCCCTT--STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             ccceecCCCC--CCCceeeeEeecCCCcCCcchhccCCCCCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence            8887664332  4699999999732   11   23457999987  4999999999999999999999999999999999


Q ss_pred             hhhcccCCcCCcccceeecccCCCCCCCCCCccccccCccCCCccEEecCCCCceeEeeCCCCCCCceEEccCCCCcEEE
Q 023505          152 DFFEKVGALDAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIV  231 (281)
Q Consensus       152 ~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~~~~GLqv~~~~~~~~~~w~~v~~~~g~~iv  231 (281)
                      ++|.  +.+..+.+.||++||||++.+ ... +|+++|||+|+||||+||+++||||+.++|+    |++|+|.||++||
T Consensus       158 ~~f~--~~~~~~~~~lr~~~Ypp~~~~-~~~-~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~----W~~V~p~pg~~vV  229 (312)
T 3oox_A          158 DFFK--PTVQDGNSVLRLLHYPPIPKD-ATG-VRAGAHGDINTITLLLGAEEGGLEVLDRDGQ----WLPINPPPGCLVI  229 (312)
T ss_dssp             TTTH--HHHTTCCCEEEEEEECCCSSC-CC---CEEEECCCSSEEEEECCTTSCEEEECTTSC----EEECCCCSSCEEE
T ss_pred             HHHH--HHhcCCcceeeeEecCCCCCC-cCC-cCccceecCceEEEEeEcCcCceEEECCCCc----EEECCCCCCeEEE
Confidence            9998  777778899999999999875 233 8999999999999999999999999987765    9999999999999


Q ss_pred             ehhhhHHHHhCCcccccceeecCC-----CCCeEEEEeeecCCCCCCCccCCCC
Q 023505          232 NIGDMMERWTNCLFRSTLHRVMSS-----GQERYSVIICFLSHLCFPHSNAFGC  280 (281)
Q Consensus       232 n~Gd~l~~~T~G~~ks~~HRV~~~-----~~~R~S~~~f~~p~~d~~~~~~~~~  280 (281)
                      |+||+|++||||+|||++|||+++     +.+|||++||++|+.|++|.|+|+|
T Consensus       230 NiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~  283 (312)
T 3oox_A          230 NIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNC  283 (312)
T ss_dssp             EECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGG
T ss_pred             EhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccc
Confidence            999999999999999999999985     3479999999999999999999974
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A Back     alignment and structure
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-47
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-45
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 4e-44
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-36
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  158 bits (400), Expect = 6e-47
 Identities = 61/268 (22%), Positives = 127/268 (47%), Gaps = 17/268 (6%)

Query: 3   EALQLPVIDLSSPD------RLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKF 56
           +  Q+P IDL + +      R +  + +++A +D+G  +L+NHG+  +L+ ++    ++F
Sbjct: 42  DGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF 101

Query: 57  FSLQLEDKMKLARKEHRGYTALCDEILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLE 116
           FSL +E+K K A  +  G        L  +++ + + ++ F+          ++ WP  +
Sbjct: 102 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWP--K 159

Query: 117 ILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEK-VGALDAPMAFLRLLHYPGE 175
               +      Y + +     ++   +++ L L  D  EK VG L+  +  +++ +YP  
Sbjct: 160 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPK- 218

Query: 176 LVSSNQEVCGASAHSDYGMITLLATDGVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGD 235
                +   G  AH+D   +T +  + VPGLQ+  E       W     +  +++++IGD
Sbjct: 219 -CPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGD 272

Query: 236 MMERWTNCLFRSTLHRVMS-SGQERYSV 262
            +E  +N  ++S LHR +    + R S 
Sbjct: 273 TLEILSNGKYKSILHRGLVNKEKVRISW 300
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.33
d2csga1417 Hypothetical protein YbiU {Salmonella typhimurium 89.27
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 80.44
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=8e-64  Score=437.19  Aligned_cols=253  Identities=27%  Similarity=0.472  Sum_probs=219.7

Q ss_pred             CCcEEeCC---CcchHHHHHHHHHHHHhcceEEEEecCCCHHHHHHHHHHHHHhhcCCHHHHhhccccC--CCccccccc
Q 023505            6 QLPVIDLS---SPDRLSTAKSIRQACIDYGFFYLVNHGVEEELISQMFNESKKFFSLQLEDKMKLARKE--HRGYTALCD   80 (281)
Q Consensus         6 ~lPvIDl~---~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~Gy~~~~~   80 (281)
                      +||||||+   ..++.+++++|.+||+++|||||+||||+.++++++++.++.||++|.|+|.++....  +.||...  
T Consensus         2 ~lPvIDl~~~~~~~r~~~~~~l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~~--   79 (307)
T d1w9ya1           2 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAE--   79 (307)
T ss_dssp             CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred             CCCeEECcccCCcCHHHHHHHHHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcCCCCCcCcccc--
Confidence            79999998   3467888999999999999999999999999999999999999999999999865543  5666532  


Q ss_pred             cccCCCCCCCCCCceeeecCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhcccCCc
Q 023505           81 EILDPSSTSEGDPKESFYIGPLEGTLSSMNQWPSLEILPTWRSTMEYYHQKVLSAGRRLIHLIALALNLNEDFFEKVGAL  160 (281)
Q Consensus        81 e~~~~~~~~~~d~~E~~~~~p~~~~~~~~~~wP~~~~~~~f~~~~~~y~~~~~~~~~~ll~~l~~~lgl~~~~~~~~~~~  160 (281)
                       ..      ..|++|.|.+.+..  ....+.||+.+  +.|++.+.+|++.|.+++.+|+++|+++||+++++|.  +.+
T Consensus        80 -~~------~~d~~e~~~~~~~~--~~~~~~~~~~~--~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~--~~~  146 (307)
T d1w9ya1          80 -VT------DMDWESTFFLKHLP--ISNISEVPDLD--EEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLK--NAF  146 (307)
T ss_dssp             -GG------GCCCCEEEEEEEES--CCGGGGCTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHH--HHH
T ss_pred             -cc------ccChhhhccccccc--ccCcccCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH--hhh
Confidence             11      35899999887221  12346777764  8999999999999999999999999999999999988  444


Q ss_pred             ---CCcccceeecccCCCCCCCCCCccccccCccCCCccEEecC-CCCceeEeeCCCCCCCceEEccCCCCcEEEehhhh
Q 023505          161 ---DAPMAFLRLLHYPGELVSSNQEVCGASAHSDYGMITLLATD-GVPGLQVCREKFNQPRLWEDVPNIKGALIVNIGDM  236 (281)
Q Consensus       161 ---~~~~~~lr~~~Yp~~~~~~~~~~~~~~~H~D~~~lTll~~~-~~~GLqv~~~~~~~~~~w~~v~~~~g~~ivn~Gd~  236 (281)
                         ....+.+|++||||++.+  +...|+++|||+|+||||+|+ ..+|||+..+++     |++|+|.||++|||+||+
T Consensus       147 ~~~~~~~~~lr~~~YP~~~~~--~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~-----Wi~v~p~~~~~vVnvGD~  219 (307)
T d1w9ya1         147 YGSKGPNFGTKVSNYPPCPKP--DLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPMRHSIVVNLGDQ  219 (307)
T ss_dssp             HTTTCCEEEEEEEECCCCSCG--GGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTE-----EEECCCCTTCEEEEECHH
T ss_pred             hccccccccceecCCCCCccc--ccccccccccccceeEEeeccCCCCeEEEecCCc-----EEEeccCCCeEEEEcchh
Confidence               345778999999999774  566789999999999999996 579999987655     999999999999999999


Q ss_pred             HHHHhCCcccccceeecCC-CCCeEEEEeeecCCCCCCCccCCCC
Q 023505          237 MERWTNCLFRSTLHRVMSS-GQERYSVIICFLSHLCFPHSNAFGC  280 (281)
Q Consensus       237 l~~~T~G~~ks~~HRV~~~-~~~R~S~~~f~~p~~d~~~~~~~~~  280 (281)
                      |++||||+|||++|||+.+ +.+||||+||++|+.|++|.|+|+|
T Consensus       220 l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~  264 (307)
T d1w9ya1         220 LEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPAL  264 (307)
T ss_dssp             HHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGG
T ss_pred             hHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHH
Confidence            9999999999999999985 5699999999999999999999875
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure