Citrus Sinensis ID: 023516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEcEEEEcccccEEEEEEccccEEEEcccEEEEEEccEEEEEEEcccHHHcccEEEEccEEEEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccEEEEEcccEEEEEEEccccccEEEEcccEEEEEEEEEEEEEEEEcccEEEEEcccccEEEEcccEEEEEEccEEEEEEEccccEEEEEEccEEEEEEEEEEEEEEEEcccHHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHHHEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccEEEEEEEccccEEEEEEEccccEEEEccccHEEccccEEEEEEccccHHHHHHEEEcccEEEEEEEEcccccccEEEEEccccccEEEEEHHHcccEEEEEccHHHHHccccEEEEEEHHHccccccccHHHEEEEEccccEEEEEcccEEEEEEcccccEEEEEccEEEEEcccccEEEEEccccEEEEEccccEEEEEEccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maapffstpfqpyvyqspqdavipfqiLGGEAQVCQIMLkpqekvvarpgsmcfmsgsmemeniyipenevGMWQWLFGKTITSVvlrnpgpsdgfvgiaapslarilpidlamfggellcqpdaflcsvndvkvsntLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNvqikyngpirravfggdnlvTAVVTgpgivfiqslpfhrLSQRIARAvtspnmrenpKFFVQIAIFFFLAYVVIVSSLILTDV
Flexible Loop (DISEMBL)
maapffstPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Low Complexity Region (SEG)
MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Disordered region (IsUnstruct)
*****FSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLIL***
Disordered Region (DISOPRED)
***********************PFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME****************LFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLS***********************IFFFLAYVVIVSSLILTDV
Disordered Region (DISEMBL)
MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Disordered Region (DISPRO)
****FFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSP***ENPKFFVQIAIFFFLAYVVIVSSLILTD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
449469369	281	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.857	1e-142
363808166	281	uncharacterized protein LOC100799063 [Gl	1.0	1.0	0.861	1e-141
363808252	281	uncharacterized protein LOC100809243 [Gl	1.0	1.0	0.861	1e-141
224138636	281	predicted protein [Populus trichocarpa]	1.0	1.0	0.854	1e-138
224074179	281	predicted protein [Populus trichocarpa]	1.0	1.0	0.854	1e-138
357476813	281	hypothetical protein MTR_4g100740 [Medic	1.0	1.0	0.839	1e-137
388508380	281	unknown [Medicago truncatula]	1.0	1.0	0.832	1e-136
388508964	281	unknown [Lotus japonicus]	1.0	1.0	0.829	1e-135
388499702	281	unknown [Lotus japonicus]	1.0	1.0	0.825	1e-135
297794473	1054	predicted protein [Arabidopsis lyrata su	1.0	0.266	0.762	1e-126

>gi|449469369|ref|XP_004152393.1| PREDICTED: uncharacterized protein LOC101222761 [Cucumis sativus]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/281 (85%), Positives = 270/281 (96%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTP QPYVYQSPQDA+IPFQILGGEAQV QIMLKPQEKV+ARPGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPIQPYVYQSPQDAMIPFQILGGEAQVLQIMLKPQEKVIARPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN+++PENEVG+W WLFGK++TS+VL+N G SDG+VGIAAPSLARILPID+AMFGGELL
Sbjct: 61  MENVFLPENEVGVWHWLFGKSVTSIVLQNSGTSDGYVGIAAPSLARILPIDMAMFGGELL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKV+NT+D RVRNV+ G+EGFLRQKL+GQGLAFIL GGSVVQKNLEVG
Sbjct: 121 CQPDAFLCSVNDVKVNNTIDHRVRNVVPGVEGFLRQKLSGQGLAFILGGGSVVQKNLEVG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EVI VD+SCIVA+T+S++VQIKYNGP+RRAVFGG+NLVTA +TGPGIVFIQSLPF RLSQ
Sbjct: 181 EVIAVDISCIVAMTTSIDVQIKYNGPVRRAVFGGENLVTATLTGPGIVFIQSLPFQRLSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFFVQ+A+FFFLAYVVIVSS+ILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFVQLALFFFLAYVVIVSSIILTDV 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808166|ref|NP_001242226.1| uncharacterized protein LOC100799063 [Glycine max] gi|255639877|gb|ACU20231.1| unknown [Glycine max] gi|255640131|gb|ACU20356.1| unknown [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/281 (86%), Positives = 262/281 (93%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQSPQDA+IPFQILGGEAQV QIMLKPQEK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSPQDAIIPFQILGGEAQVVQIMLKPQEKIIAKPGSMCFMSGSVE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG+WQWLFGKTITS+VLRN GPSDGFVGIAAP  ARILPIDLAMF GE+L
Sbjct: 61  MENAYLPENEVGIWQWLFGKTITSIVLRNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVSN +DQR RN +   EGFLRQKL+GQGLAFILAGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLAFILAGGSVVQKNLEIG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVS IVAVTS+VN+QIKYNGP RR +FGGDN VTAV+TGPGIVFIQSLPFHR SQ
Sbjct: 181 EVLAVDVSSIVAVTSAVNIQIKYNGPARRTMFGGDNAVTAVLTGPGIVFIQSLPFHRFSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFF+QIA+FFFLA VVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFIQIAVFFFLACVVIVSSLILTDV 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808252|ref|NP_001241981.1| uncharacterized protein LOC100809243 [Glycine max] gi|255636372|gb|ACU18525.1| unknown [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/281 (86%), Positives = 262/281 (93%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQSPQDA+IPFQILGGEAQV QIMLKPQEK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSPQDAIIPFQILGGEAQVVQIMLKPQEKIIAKPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG+WQWLFGKTITS+VL N GPSDGFVGIAAP  ARILPIDLAMF GE+L
Sbjct: 61  MENAYLPENEVGIWQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPIDLAMFNGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVSN +DQR RN +   EGFLRQKL+GQGLAFILAGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLAFILAGGSVVQKNLEIG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVS IVAVTS+VNVQIKYNGP RR +FGGDN VTA++TGP IVFIQSLPFHRLSQ
Sbjct: 181 EVLAVDVSSIVAVTSTVNVQIKYNGPARRTMFGGDNAVTALLTGPSIVFIQSLPFHRLSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFF+QIA+FFFLAYVVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFIQIAVFFFLAYVVIVSSLILTDV 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138636|ref|XP_002326652.1| predicted protein [Populus trichocarpa] gi|118487466|gb|ABK95560.1| unknown [Populus trichocarpa] gi|222833974|gb|EEE72451.1| predicted protein [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/281 (85%), Positives = 260/281 (92%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQ+ QDAVIPFQI GGEAQV QIMLKPQEKV+A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQNHQDAVIPFQIFGGEAQVVQIMLKPQEKVIAKPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN++I ENEVG+WQW FGK +TSVV  NPGPSDGFVGI+APSL RILPIDLA FGGE+L
Sbjct: 61  MENVFIHENEVGVWQWFFGKAVTSVVFHNPGPSDGFVGISAPSLGRILPIDLAKFGGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSV+DVKVSNT+DQR RNV+  IEGFLRQKLTGQGLAFILAGGSV QK LEVG
Sbjct: 121 CQPDAFLCSVSDVKVSNTVDQRARNVMPSIEGFLRQKLTGQGLAFILAGGSVAQKVLEVG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCI A+ ++VNVQIKYNGP+RRAVFGGDNLVTA +TGPGIVFIQSLPF R SQ
Sbjct: 181 EVLAVDVSCIAALNTTVNVQIKYNGPVRRAVFGGDNLVTATLTGPGIVFIQSLPFRRFSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMR+NPKFFVQIAIFFFLAYVVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRDNPKFFVQIAIFFFLAYVVIVSSLILTDV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074179|ref|XP_002304288.1| predicted protein [Populus trichocarpa] gi|222841720|gb|EEE79267.1| predicted protein [Populus trichocarpa]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/281 (85%), Positives = 258/281 (91%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQS Q AVIPFQILGGEAQ+ QIMLKPQEK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSHQGAVIPFQILGGEAQMVQIMLKPQEKIIAKPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN+ IPENEVG+WQW FGK +TSV+ RNPGPSDGFVGIA PSLARILPIDLA FGGE+L
Sbjct: 61  MENVLIPENEVGVWQWFFGKAVTSVIFRNPGPSDGFVGIATPSLARILPIDLAKFGGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           C PDAFLCS+NDVKVSN LD R RNV+  IEGFLRQKLTGQGLAFILAGGSV QK LEVG
Sbjct: 121 CLPDAFLCSINDVKVSNALDHRARNVMPNIEGFLRQKLTGQGLAFILAGGSVAQKVLEVG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCIVA+ ++VNVQIKYNGP+RRAVFGGDNLVTA +TGPGIVFIQSLPF   SQ
Sbjct: 181 EVLAVDVSCIVALNTTVNVQIKYNGPVRRAVFGGDNLVTATLTGPGIVFIQSLPFQLFSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476813|ref|XP_003608692.1| hypothetical protein MTR_4g100740 [Medicago truncatula] gi|355509747|gb|AES90889.1| hypothetical protein MTR_4g100740 [Medicago truncatula]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/281 (83%), Positives = 260/281 (92%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQS QDA+IPFQILGGE+QV QIMLKP EK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG+WQWLFGKT+T++V+RN GPSDGFVGIAAP  ARILPIDLA F GE+L
Sbjct: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVSNT+DQR RNV+ G E FLRQKL+GQGLAFIL GGSVVQK LEVG
Sbjct: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCIVAVTS+V++QIKYNGP RR +FGGDN VTAV+TGPGIVFIQSLPF R SQ
Sbjct: 181 EVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFGGDNAVTAVLTGPGIVFIQSLPFPRFSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFF+QIA+FFFLAYVVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFIQIALFFFLAYVVIVSSLILTDV 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508380|gb|AFK42256.1| unknown [Medicago truncatula]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/281 (83%), Positives = 260/281 (92%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQS QDA+IPFQILGGE+QV QIMLKP EK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG+WQWLFGKT+T++V+RN GPSDGFVGIAAP  ARILPIDLA F GE+L
Sbjct: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILPIDLATFNGEIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVS+T+DQR RNV+ G E FLRQKL+GQGLAFIL GGSVVQK LEVG
Sbjct: 121 CQPDAFLCSVNDVKVSDTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCIVAVTS+V++QIKYNGP RR +FGGDN VTAV+TGPGIVFIQSLPF R S+
Sbjct: 181 EVLAVDVSCIVAVTSTVDIQIKYNGPARRTMFGGDNAVTAVLTGPGIVFIQSLPFPRFSR 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKFF+QIA+FFFLAYVVIVSSLILTDV
Sbjct: 241 RIARAVTSPNMRENPKFFIQIALFFFLAYVVIVSSLILTDV 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508964|gb|AFK42548.1| unknown [Lotus japonicus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/281 (82%), Positives = 260/281 (92%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQSPQD +IPFQILGGE+QV QIMLKPQEK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSPQDEIIPFQILGGESQVVQIMLKPQEKIIAKPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG  QWLFGKTITS+VL N GPSDGFVGIAAP  ARILPIDLAMF G +L
Sbjct: 61  MENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPIDLAMFNGGIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVSNT DQR +NV+ G E FLRQKL+GQG+AFILAGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNTFDQRGQNVVAGAERFLRQKLSGQGVAFILAGGSVVQKNLEIG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCIVAVTS+VNVQIK NGP RR +FGGD++VTA++TGPGIVFIQSLPFHRLSQ
Sbjct: 181 EVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTALLTGPGIVFIQSLPFHRLSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKF++QIA+FF +AYVVI+SSL+LTDV
Sbjct: 241 RIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSLLLTDV 281

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499702|gb|AFK37917.1| unknown [Lotus japonicus]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/281 (82%), Positives = 259/281 (92%)

Query: 1   MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
           MAAPFFSTPFQPYVYQSPQD +IPFQILGGE+QV QIMLKPQEK++A+PGSMCFMSGS+E
Sbjct: 1   MAAPFFSTPFQPYVYQSPQDEIIPFQILGGESQVVQIMLKPQEKIIAKPGSMCFMSGSIE 60

Query: 61  MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
           MEN Y+PENEVG  QWLFGKTITS+VL N GPSDGFVGI AP  ARILPIDLAMF G +L
Sbjct: 61  MENAYLPENEVGFRQWLFGKTITSIVLCNSGPSDGFVGIVAPYFARILPIDLAMFNGGIL 120

Query: 121 CQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVG 180
           CQPDAFLCSVNDVKVSNT DQR +NV+ G E FLRQKL+GQG+AFILAGGSVVQKNLE+G
Sbjct: 121 CQPDAFLCSVNDVKVSNTFDQRGQNVVAGAERFLRQKLSGQGVAFILAGGSVVQKNLEIG 180

Query: 181 EVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQ 240
           EV+ VDVSCIVAVTS+VNVQIK NGP RR +FGGD++VTA++TGPGIVFIQSLPFHRLSQ
Sbjct: 181 EVLAVDVSCIVAVTSTVNVQIKNNGPARRTMFGGDHVVTALLTGPGIVFIQSLPFHRLSQ 240

Query: 241 RIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
           RIARAVTSPNMRENPKF++QIA+FF +AYVVI+SSL+LTDV
Sbjct: 241 RIARAVTSPNMRENPKFYIQIAVFFLMAYVVILSSLLLTDV 281

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794473|ref|XP_002865121.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310956|gb|EFH41380.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/282 (76%), Positives = 251/282 (89%), Gaps = 1/282 (0%)

Query: 1    MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
            MAAPFFSTPFQPYVYQS QD + PFQILGGE+QV QIMLK +EKV+A+P SMC+MSGS+E
Sbjct: 773  MAAPFFSTPFQPYVYQSQQDTITPFQILGGESQVVQIMLKSEEKVIAKPASMCYMSGSIE 832

Query: 61   MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
            MEN Y PE EVG+ QW+ GK+++SV+LRN G +DGFVGIAAP LARILPIDLAMFGGE+L
Sbjct: 833  MENTYTPEQEVGVLQWILGKSVSSVLLRNTGQNDGFVGIAAPYLARILPIDLAMFGGEIL 892

Query: 121  CQPDAFLCSVNDVKVSNTLDQRVRNVI-GGIEGFLRQKLTGQGLAFILAGGSVVQKNLEV 179
            CQPDAFLCSV+DVK+ N++DQR RN++  G EGFLRQ+L+GQGLAFILAGGSV+QK LEV
Sbjct: 893  CQPDAFLCSVHDVKIVNSVDQRARNIVAAGAEGFLRQRLSGQGLAFILAGGSVLQKVLEV 952

Query: 180  GEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLS 239
            GEV ++DVSCI A+T S++VQIK N P+RRAVFGGDN+V A +TGPGIVFIQSLPFHRLS
Sbjct: 953  GEVFSIDVSCIAALTPSIDVQIKNNAPLRRAVFGGDNVVMATLTGPGIVFIQSLPFHRLS 1012

Query: 240  QRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
            QRIAR+VTSPNMRENPK  +QIAIF FLAY VI+SSLILT+V
Sbjct: 1013 QRIARSVTSPNMRENPKLLIQIAIFAFLAYAVILSSLILTEV 1054

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2129016	285	AT4G17420 "AT4G17420" [Arabido	1.0	0.985	0.768	3.4e-116
TAIR|locus:2171559	282	AT5G47420 "AT5G47420" [Arabido	1.0	0.996	0.765	8.2e-115
UNIPROTKB|Q81K89	260	BA_5116 "Uncharacterized prote	0.793	0.857	0.371	1.3e-36
TIGR_CMR|BA_5116	260	BA_5116 "conserved hypothetica	0.793	0.857	0.371	1.3e-36
UNIPROTKB|Q888R9	244	PSPTO_0947 "Uncharacterized pr	0.786	0.905	0.357	1.1e-32
UNIPROTKB|Q48NA0	244	PSPPH_0840 "Uncharacterized pr	0.786	0.905	0.357	1.4e-32
UNIPROTKB|Q8EFK5	264	SO_1966 "Uncharacterized prote	0.779	0.829	0.360	1.6e-31
TIGR_CMR|SO_1966	264	SO_1966 "conserved hypothetica	0.779	0.829	0.360	1.6e-31
UNIPROTKB|Q3AA87	228	CHY_2133 "Putative uncharacter	0.768	0.947	0.302	1.6e-22
TIGR_CMR|CHY_2133	228	CHY_2133 "conserved hypothetic	0.768	0.947	0.302	1.6e-22

TAIR|locus:2129016 AT4G17420 "AT4G17420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 219/285 (76%), Positives = 254/285 (89%)

Query:     1 MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
             MAAPFFSTPFQPYVYQS +D + PFQILGGEAQV QIMLKPQEKV+A+PGSMC+MSGS+E
Sbjct:     1 MAAPFFSTPFQPYVYQSQEDTITPFQILGGEAQVVQIMLKPQEKVIAKPGSMCYMSGSIE 60

Query:    61 MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
             M+N Y PE EVG+ QW+ GK+++S+VLRN G +DGFVGIAAPSLARILP+DLAMFGG++L
Sbjct:    61 MDNTYTPEQEVGVVQWILGKSVSSIVLRNTGQNDGFVGIAAPSLARILPLDLAMFGGDIL 120

Query:   121 CQPDAFLCSVNDVKVSNTLDQR--VRNVIG-GIEGFLRQKLTGQGLAFILAGGSVVQKNL 177
             CQPDAFLCSV+DVKV NT+ QR   RN+   G EG LRQ+L+GQGLAFI+AGGSVVQKNL
Sbjct:   121 CQPDAFLCSVHDVKVVNTVYQRHRARNIAAAGAEGVLRQRLSGQGLAFIIAGGSVVQKNL 180

Query:   178 EVGEVITVDVSCIVAVTSSVNVQIKYNG-PIRRAVFGGDNLVTAVVTGPGIVFIQSLPFH 236
             EVGEV+T+DVSCI A+T S+N QIKYN  P+RRAVFGGDN+VTA +TGPGIVFIQSLPFH
Sbjct:   181 EVGEVLTIDVSCIAALTPSINFQIKYNAAPVRRAVFGGDNVVTATLTGPGIVFIQSLPFH 240

Query:   237 RLSQRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
             RLSQRIAR+VTSPNMRENP+  VQI +F FLAYVVIVSSLILT++
Sbjct:   241 RLSQRIARSVTSPNMRENPRLLVQIGLFIFLAYVVIVSSLILTEM 285

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2171559 AT5G47420 "AT5G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 216/282 (76%), Positives = 250/282 (88%)

Query:     1 MAAPFFSTPFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSME 60
             MAAPFFSTPFQPYVYQS QD + PFQILGGE+QV QIMLK +EKV+A+P SMC+MSGS+E
Sbjct:     1 MAAPFFSTPFQPYVYQSQQDTITPFQILGGESQVVQIMLKSEEKVIAKPASMCYMSGSIE 60

Query:    61 MENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELL 120
             MEN Y PE EVG+ QW+ GK+++SVVLRN G +DGFVGIAAP LARILPIDLAMFGGE+L
Sbjct:    61 MENTYTPEQEVGVLQWILGKSVSSVVLRNTGQNDGFVGIAAPYLARILPIDLAMFGGEIL 120

Query:   121 CQPDAFLCSVNDVKVSNTLDQRVRNVIG-GIEGFLRQKLTGQGLAFILAGGSVVQKNLEV 179
             CQPDAFLCSV+DVKV N++DQR RN++  G EGFLRQ+L+GQGLAFILAGGSVVQK LEV
Sbjct:   121 CQPDAFLCSVHDVKVVNSVDQRARNIVAAGAEGFLRQRLSGQGLAFILAGGSVVQKVLEV 180

Query:   180 GEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLS 239
             GEV ++DVSCI A+T S++V+IK N P RRA+FGGDN+V A +TGPGIVFIQSLPFHRLS
Sbjct:   181 GEVFSIDVSCIAALTPSIDVRIKNNAPFRRALFGGDNVVMATLTGPGIVFIQSLPFHRLS 240

Query:   240 QRIARAVTSPNMRENPKFFVQIAIFFFLAYVVIVSSLILTDV 281
             QRIAR+VTSPNMRENPK  +QIAIF FLAY VI+SSLILT+V
Sbjct:   241 QRIARSVTSPNMRENPKLLIQIAIFAFLAYAVILSSLILTEV 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q81K89 BA_5116 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 88/237 (37%), Positives = 135/237 (56%)

Query:    23 IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN--EVGMWQWLFG- 79
             I +++ G + Q  +I L P+E V+A  G+M  M   +EME I+   +    G++  L G 
Sbjct:     6 IEYKLYGDDMQFVEIELDPEESVIAEAGAMMMMEDYIEMETIFGDGSGPSGGLFGKLMGA 65

Query:    80 --KTITS-----VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVND 132
               + +T       V  N G     V  AAP   +I+P+DL  + G+++CQ DAFLC+   
Sbjct:    66 GKRLVTGESMFMTVFTNTGHGKRHVSFAAPYPGKIIPVDLTEYQGKVVCQKDAFLCAAKG 125

Query:   133 VKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVA 192
             V +     +++     G EGF+ QKL G GLAF+ AGG+V ++ L+ GE + +D  C+VA
Sbjct:   126 VSIGIEFTKKIGTGFFGGEGFIMQKLEGDGLAFMHAGGTVYKRELKPGEKLRIDTGCLVA 185

Query:   193 VTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSP 249
             +T  VN  +++ G ++ A+FGG+ L  A + GPG V+IQSL   RLS R+    TSP
Sbjct:   186 MTKDVNYDVEFVGKVKTALFGGEGLFFATLEGPGTVWIQSLTLSRLSARL----TSP 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5116 BA_5116 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 88/237 (37%), Positives = 135/237 (56%)

Query:    23 IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN--EVGMWQWLFG- 79
             I +++ G + Q  +I L P+E V+A  G+M  M   +EME I+   +    G++  L G 
Sbjct:     6 IEYKLYGDDMQFVEIELDPEESVIAEAGAMMMMEDYIEMETIFGDGSGPSGGLFGKLMGA 65

Query:    80 --KTITS-----VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVND 132
               + +T       V  N G     V  AAP   +I+P+DL  + G+++CQ DAFLC+   
Sbjct:    66 GKRLVTGESMFMTVFTNTGHGKRHVSFAAPYPGKIIPVDLTEYQGKVVCQKDAFLCAAKG 125

Query:   133 VKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVA 192
             V +     +++     G EGF+ QKL G GLAF+ AGG+V ++ L+ GE + +D  C+VA
Sbjct:   126 VSIGIEFTKKIGTGFFGGEGFIMQKLEGDGLAFMHAGGTVYKRELKPGEKLRIDTGCLVA 185

Query:   193 VTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSP 249
             +T  VN  +++ G ++ A+FGG+ L  A + GPG V+IQSL   RLS R+    TSP
Sbjct:   186 MTKDVNYDVEFVGKVKTALFGGEGLFFATLEGPGTVWIQSLTLSRLSARL----TSP 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q888R9 PSPTO_0947 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 83/232 (35%), Positives = 128/232 (55%)

Query:    25 FQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP-ENEV-GMWQWLFG--- 79
             F++ G E Q  ++ L P E  VA  G+M + +  ++ME I+    N+  G+   LFG   
Sbjct:     3 FKLYGAETQFVELELDPGESAVAEAGAMMYKTCDVQMETIFGDGSNQSSGLLGSLFGAGK 62

Query:    80 -----KTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVK 134
                  +++ + V    G   G V  AAP    ILP++L  FGG+L+CQ D+FL     V 
Sbjct:    63 RMLTGESLFTTVFSQQGSGKGRVAFAAPYPGTILPLNLRDFGGKLICQKDSFLAGAKGVS 122

Query:   135 VSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVT 194
             +     +++   + G EGF+ QKL G G  F+  GG+V +  L  GE + VD  C+ A+T
Sbjct:   123 IGIQFQKKILTGLFGGEGFVLQKLEGDGWVFVHMGGTVRKIELAAGEALDVDTGCLAAMT 182

Query:   195 SSVNVQIKY-NGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARA 245
              +V+  I+   G I+  +FGG+ +  A +TGPG V++QSLPF RL+ R+  A
Sbjct:   183 QTVDYDIRMVGGGIKSMLFGGEGVFFARLTGPGTVWLQSLPFSRLAGRMLAA 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48NA0 PSPPH_0840 "Uncharacterized protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 83/232 (35%), Positives = 128/232 (55%)

Query:    25 FQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP-ENEV-GMWQWLFG--- 79
             F++ G E Q  ++ L P E  VA  G+M + +  ++ME I+    N+  G+   LFG   
Sbjct:     3 FKLYGAETQFVELELDPGESAVAEAGAMMYKTCDVQMETIFGDGSNQSSGLLGSLFGAGK 62

Query:    80 -----KTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVK 134
                  +++ + V    G   G V  AAP    ILP++L  FGG+L+CQ D+FL     V 
Sbjct:    63 RMLTGESLFTTVFSQQGSGKGRVAFAAPYPGTILPLNLRDFGGKLICQKDSFLAGAKGVS 122

Query:   135 VSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVT 194
             +     +++   + G EGF+ QKL G G  F+  GG+V +  L  GE + VD  C+ A+T
Sbjct:   123 IGIQFQKKILTGLFGGEGFILQKLEGDGWVFVHMGGTVRKIELAAGESLDVDTGCLAAMT 182

Query:   195 SSVNVQIKY-NGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARA 245
              +V+  I+   G I+  +FGG+ +  A +TGPG V++QSLPF RL+ R+  A
Sbjct:   183 QTVDYDIRMVGGGIKSMLFGGEGVFFARLTGPGTVWLQSLPFSRLAGRMLAA 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EFK5 SO_1966 "Uncharacterized protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 83/230 (36%), Positives = 128/230 (55%)

Query:    23 IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP--ENEVGMWQWLFG- 79
             + ++I+G   Q+ ++ L P E V+A  G+M ++   +  E       E + G +  L G 
Sbjct:     8 VDYEIIGHSMQLVEVELDPNETVIAEAGAMNYLEQDISFEAKMGDGSEPDSGFFGKLMGA 67

Query:    80 --KTIT--SVVLR---NPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVND 132
               + +T  S+ +    N G     V  AAP    IL IDLA +GGEL+CQ D+FL +   
Sbjct:    68 GKRALTGESIFMTHFTNLGHQKCKVAFAAPYPGTILAIDLAQYGGELICQKDSFLAAALG 127

Query:   133 VKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVA 192
              +VS   ++R+     G EGF+ Q L G G+AFI AGG++++K L+ GE + VD  C+V 
Sbjct:   128 TRVSMKFNRRLGTGFFGGEGFILQSLQGDGMAFIHAGGTLIKKELK-GETLRVDTGCLVG 186

Query:   193 VTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRI 242
              T  V+  I+  G ++   FGG+ L  A + G G V++QSLPF R++ RI
Sbjct:   187 FTPGVDYDIERAGSLKSMFFGGEGLFLATLKGHGTVWLQSLPFSRMADRI 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1966 SO_1966 "conserved hypothetical protein TIGR00266" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 83/230 (36%), Positives = 128/230 (55%)

Query:    23 IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP--ENEVGMWQWLFG- 79
             + ++I+G   Q+ ++ L P E V+A  G+M ++   +  E       E + G +  L G 
Sbjct:     8 VDYEIIGHSMQLVEVELDPNETVIAEAGAMNYLEQDISFEAKMGDGSEPDSGFFGKLMGA 67

Query:    80 --KTIT--SVVLR---NPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVND 132
               + +T  S+ +    N G     V  AAP    IL IDLA +GGEL+CQ D+FL +   
Sbjct:    68 GKRALTGESIFMTHFTNLGHQKCKVAFAAPYPGTILAIDLAQYGGELICQKDSFLAAALG 127

Query:   133 VKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVA 192
              +VS   ++R+     G EGF+ Q L G G+AFI AGG++++K L+ GE + VD  C+V 
Sbjct:   128 TRVSMKFNRRLGTGFFGGEGFILQSLQGDGMAFIHAGGTLIKKELK-GETLRVDTGCLVG 186

Query:   193 VTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRI 242
              T  V+  I+  G ++   FGG+ L  A + G G V++QSLPF R++ RI
Sbjct:   187 FTPGVDYDIERAGSLKSMFFGGEGLFLATLKGHGTVWLQSLPFSRMADRI 236

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3AA87 CHY_2133 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 66/218 (30%), Positives = 111/218 (50%)

Query:    25 FQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITS 84
             F+I+G    V  + L   EKV  + G M +MS   EM+         G+ + L G+T+  
Sbjct:     3 FKIVGETLPVVILTLGKGEKVFTQAGGMAWMSEGFEMQTNMEGGLLKGIARKLAGETLFM 62

Query:    85 VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVR 144
                     S G +  A+    +I+P++L   G  ++CQ  AFLC  + VK+     +++ 
Sbjct:    63 TTYTCTRDS-GEIAFASSFPGKIIPLELKA-GQSIICQKKAFLCGESSVKLEIFFRKKIG 120

Query:   145 NVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYN 204
             + + G EGF+ +K+TG GL F+   G+VV+  L   +++ VD   +     +V  +I+  
Sbjct:   121 SGLFGGEGFILEKVTGPGLCFVEIDGAVVEYELGSNDILKVDQGHVAMFEPTVTFEIEMV 180

Query:   205 GPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRI 242
                   +FGG+ L  A + GPG V++QSLP   L+ R+
Sbjct:   181 KGFTNVLFGGEGLFLATLKGPGKVWLQSLPIENLAARL 218

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_2133 CHY_2133 "conserved hypothetical protein TIGR00266" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 66/218 (30%), Positives = 111/218 (50%)

Query:    25 FQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITS 84
             F+I+G    V  + L   EKV  + G M +MS   EM+         G+ + L G+T+  
Sbjct:     3 FKIVGETLPVVILTLGKGEKVFTQAGGMAWMSEGFEMQTNMEGGLLKGIARKLAGETLFM 62

Query:    85 VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVR 144
                     S G +  A+    +I+P++L   G  ++CQ  AFLC  + VK+     +++ 
Sbjct:    63 TTYTCTRDS-GEIAFASSFPGKIIPLELKA-GQSIICQKKAFLCGESSVKLEIFFRKKIG 120

Query:   145 NVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYN 204
             + + G EGF+ +K+TG GL F+   G+VV+  L   +++ VD   +     +V  +I+  
Sbjct:   121 SGLFGGEGFILEKVTGPGLCFVEIDGAVVEYELGSNDILKVDQGHVAMFEPTVTFEIEMV 180

Query:   205 GPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRI 242
                   +FGG+ L  A + GPG V++QSLP   L+ R+
Sbjct:   181 KGFTNVLFGGEGLFLATLKGPGKVWLQSLPIENLAARL 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      281       281   0.00083  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  180 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.04u 0.11s 22.15t   Elapsed:  00:00:01
  Total cpu time:  22.04u 0.11s 22.15t   Elapsed:  00:00:01
  Start:  Fri May 10 06:13:54 2013   End:  Fri May 10 06:13:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_290068 SubName- Full=Putative uncharacterized protein; (282 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
pfam01987	206	pfam01987, AIM24, Mitochondrial biogenesis AIM24	1e-48
COG2013	227	COG2013, COG2013, Uncharacterized conserved protei	1e-30
TIGR00266	222	TIGR00266, TIGR00266, TIGR00266 family protein	4e-10

>gnl|CDD|216830 pfam01987, AIM24, Mitochondrial biogenesis AIM24

 Score =  160 bits (406), Expect = 1e-48
 Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 8/212 (3%)

Query: 25  FQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTIT 83
           ++I+ G   QV ++ L P E V A  G+M  MSG++E E          + + L G+++ 
Sbjct: 1   YEIILGPNFQVVEVELDPGESVYAEAGAMVAMSGNIEFETKMGGGLLGALKRALTGESLF 60

Query: 84  SVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRV 143
                      G V +A      I+ ++L   G  ++ Q  AFL +   V++     Q  
Sbjct: 61  LTEFTAAS-GPGEVYLAPSGPGDIIVLELD--GEGIIVQKGAFLAAEGGVELDIKF-QGF 116

Query: 144 RNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKY 203
               GG EG    KL+G GL F+ + G++V+  L  GE + VD   +VA T  +N  ++ 
Sbjct: 117 LGGFGG-EGLFLLKLSGTGLVFLSSYGAIVEIELAPGEPLVVDTGHLVAWTGGLNYDVEK 175

Query: 204 -NGPIRRAVFGGDNLVTAVVTGPGIVFIQSLP 234
            +G ++ A+F G+ LV    TGPG V++QS  
Sbjct: 176 VSGGLKGALFSGEGLV-LRFTGPGKVYLQSRN 206

In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown. Length = 206

>gnl|CDD|224924 COG2013, COG2013, Uncharacterized conserved protein [Function unknown]

 Score =  113 bits (286), Expect = 1e-30
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 13/228 (5%)

Query: 22  VIPFQILGGEA-QVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGK 80
            + ++ILG  +  V ++ L P E V A  G+M +M G +E++     +   G       +
Sbjct: 5   EMDYEILGDPSFAVLEVELSPGESVYAEAGAMVYMDGDVEVKT----KMGFGGLLGALKR 60

Query: 81  --TITSVVLRN-PGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSN 137
                S+ L    G  +G V +A P    I+ ++L   G  ++    AFL +   V    
Sbjct: 61  ALGGESLFLTKFEGRGEGEVALAPPYPGDIVALELG--GESIIVNDGAFLAAEGGVDYGV 118

Query: 138 TLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSV 197
              Q    + GG EG    KL G G  F+ + G  V+  L+ GE +TVD   +VA + S+
Sbjct: 119 EF-QGGLGLFGG-EGLFLLKLEGTGTVFLSSYGDPVEVELDPGETVTVDPGHVVAFSDSL 176

Query: 198 NVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARA 245
           +  ++  G ++ ++  G+ LV  V  GPG V++Q       +  I   
Sbjct: 177 DYSVEKVGGLKSSLLSGEGLV-FVFRGPGKVWVQPRSLSAFAGEIGSR 223

Length = 227

>gnl|CDD|232899 TIGR00266, TIGR00266, TIGR00266 family protein

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 23  IPFQILGGEA-QVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKT 81
           + ++I    +  + ++ LKP E+V+A  G+M  M G +E+           + + L G++
Sbjct: 1   MLYKIRHRPSYSMLELTLKPGERVLAETGAMVSMDGGVELSTECGGGLLGALKRSLGGES 60

Query: 82  ITSVVLRNP-GPSDGFVGIAAP-SLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTL 139
           +       P GP    +  A P  +  +L          +  Q  AFL   + V++    
Sbjct: 61  LFLNAFHAPQGPGSLQLAPALPGDITHLLLTK-----NGIYAQSGAFLAHTSGVEIDTKW 115

Query: 140 DQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVNV 199
              ++    G   FL  KL G+G  F+ + G++ Q  L V     VD   IVA   +++ 
Sbjct: 116 GG-LKTFFAGEGLFL-LKLQGKGDVFLSSYGTLNQ--LSVNGSFVVDTGHIVAFEPTLDY 171

Query: 200 QI-KYNGPIRRAVFGGDNLVTAVVTGPGIVFIQS 232
           ++ K  G ++  V  G+ LV ++  G G V+ QS
Sbjct: 172 KVNKPVGGLKGDVLSGEGLV-SLFKGSGKVYWQS 204

[Hypothetical proteins, Conserved]. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
TIGR00266	222	conserved hypothetical protein TIGR00266.	100.0
COG2013	227	Uncharacterized conserved protein [Function unknow	100.0
PF01987	215	AIM24: Mitochondrial biogenesis AIM24; InterPro: I	100.0
TIGR00266	222	conserved hypothetical protein TIGR00266.	99.85
COG2013	227	Uncharacterized conserved protein [Function unknow	99.85
PF01987	215	AIM24: Mitochondrial biogenesis AIM24; InterPro: I	99.72

>TIGR00266 conserved hypothetical protein TIGR00266

Probab=100.00  E-value=1.8e-52  Score=372.82  Aligned_cols=218  Identities=22%  Similarity=0.339  Sum_probs=200.0

Q ss_pred             eeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccCcccceeeeecceeeeeeeeecCCCceEEEEec
Q 023516           23 IPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAA  101 (281)
Q Consensus        23 ~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~lap  101 (281)
                      |+|+|.++ ++++|+|+|+|||+|++|+|||+||+++|+++++..++..+++.|+++||++|+++|+++ +++|+|+++|
T Consensus         1 m~~~i~~~~~~~~l~v~L~~ge~v~ae~GaMv~~~~~v~~~~~~~gG~~~~l~r~~~GEs~f~~~~~a~-~g~G~v~lap   79 (222)
T TIGR00266         1 MLYKIRHRPSYSMLELTLKPGERVLAETGAMVSMDGGVELSTECGGGLLGALKRSLGGESLFLNAFHAP-QGPGSLQLAP   79 (222)
T ss_pred             CeEEEecCCCceEEEEEECCCCEEEEecCeEEEecCCeEEEEEECChHHHHHHHHhcCCceEEEEEEcC-CCCEEEEEeC
Confidence            68999987 589999999999999999999999999999999974333345666789999999999875 4789999999


Q ss_pred             CCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcCCCC
Q 023516          102 PSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGE  181 (281)
Q Consensus       102 ~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~~ge  181 (281)
                      +.||+|..+++.  +|++++++++|||++++|++++++. ++ +++++|||+|+++++|+|+||++++|+|++++|+  |
T Consensus        80 ~~pg~i~~i~l~--ge~i~v~~ga~lA~~~~V~~~~~~~-g~-~~~~~Geglf~~~~~G~G~V~l~~~G~ii~~~l~--~  153 (222)
T TIGR00266        80 ALPGDITHLLLT--KNGIYAQSGAFLAHTSGVEIDTKWG-GL-KTFFAGEGLFLLKLQGKGDVFLSSYGTLNQLSVN--G  153 (222)
T ss_pred             CCCcCEEEEEcC--CCEEEEECCeEEEeCCCeEEEEEeh-hh-ceeEecCcEEEEEEEeeeEEEEECCceEEEEeCC--C
Confidence            999999999886  7899999999999999999999985 35 4589999999999999999999999999999984  6


Q ss_pred             EEEEcCCeEEEEcCCeEEEEEE-eCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCCC
Q 023516          182 VITVDVSCIVAVTSSVNVQIKY-NGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTS  248 (281)
Q Consensus       182 ~l~Vd~~~~vA~~~~v~~~i~~-~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp~  248 (281)
                      +++||++|+|||++++++++++ .+++++.+++|||++ ++|+|||+||+|||++++|++||++++|+
T Consensus       154 ~~~Vd~~~~vA~~~~v~~~i~~~~~~l~~~~~sGEGl~-~~~tG~G~V~vQs~~~~~~~~~~~~~~~~  220 (222)
T TIGR00266       154 SFVVDTGHIVAFEPTLDYKVNKPVGGLKGDVLSGEGLV-SLFKGSGKVYWQSRSLSSFVGWLRSRLPS  220 (222)
T ss_pred             EEEEECCeEEEECCCceEEEEEeeCCceeEEEcCCeEE-EEEEeCeEEEEEcCCHHHHHHHHHhhCcC
Confidence            9999999999999999999999 578888889999998 99999999999999999999999999994

>COG2013 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.1e-51  Score=362.29  Aligned_cols=220  Identities=26%  Similarity=0.431  Sum_probs=204.0

Q ss_pred             CeeeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcc-cCcccceeeeecceeeeeeeeecCCCceEEE
Q 023516           21 AVIPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIP-ENEVGMWQWLFGKTITSVVLRNPGPSDGFVG   98 (281)
Q Consensus        21 ~~~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~-~~~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~   98 (281)
                      ..|+|+|.++ ..++++|+|+|+|+|++|+|+|+||+++|+++++++. +-.++++|+++||++|++.+++.  ++|+|+
T Consensus         4 ~~~~y~i~~~~~~~~leveL~~ge~V~~e~Gam~~~~~~v~~~~~~~~gGl~~a~~r~l~GEs~F~~~~~~~--G~~~v~   81 (227)
T COG2013           4 LEMDYEILGDPSFAVLEVELSPGESVYAEAGAMVYMDGDVEVKTKMGFGGLLGALKRALGGESLFLTKFEGR--GEGEVA   81 (227)
T ss_pred             ceeeEEEecCCCccEEEEEeCCCcEEEEecCeEEEccCCEEEEEEecCCcHHHHHHHHhcCCceEEEEEecC--CceeEE
Confidence            3589999988 5899999999999999999999999999999999852 22234556689999999999974  667999


Q ss_pred             EecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcC
Q 023516           99 IAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLE  178 (281)
Q Consensus        99 lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~  178 (281)
                      ++|++||+|.+++|+  |++|+++.++|||++++|++++++.+.+  ++++|||+|+++++|+|.||++++|++++++|.
T Consensus        82 lap~~pG~I~~~~L~--g~~i~v~~~~FLA~~~~v~~~~~~~~~~--~~~~geGlf~~kl~G~G~v~l~s~G~~~~~~l~  157 (227)
T COG2013          82 LAPPYPGDIVALELG--GESIIVNDGAFLAAEGGVDYGVEFQGGL--GLFGGEGLFLLKLEGTGTVFLSSYGDPVEVELD  157 (227)
T ss_pred             ECCCCCCcEEEEEcC--CCEEEEeCCcEEEecCCceEEEEECccc--ceecCCceEEEEEEeeeEEEEECCCCeEEEEcC
Confidence            999999999999998  7999999999999999999999997754  589999999999999999999999999999999


Q ss_pred             CCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCC
Q 023516          179 VGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVT  247 (281)
Q Consensus       179 ~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp  247 (281)
                      |||+++||++|+|||+++++|++++.+++++.+++|||++ ++|+|||+||+||++...++.++.+.+|
T Consensus       158 ~ge~~~VD~~~~VA~~~~l~~~v~~~~gl~~~~~~GEGlv-~~f~G~G~V~iq~~~~~~~~~~~~~~~~  225 (227)
T COG2013         158 PGETVTVDPGHVVAFSDSLDYSVEKVGGLKSSLLSGEGLV-FVFRGPGKVWVQPRSLSAFAGEIGSRLP  225 (227)
T ss_pred             CCceEEEcCCcEEEEcCCccEEEEEccchhhhhcccceEE-EEEEeCCEEEEEECCHHHhhHhhhhccC
Confidence            9999999999999999999999999999999999999998 8999999999999999999999999996

>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function

Probab=100.00  E-value=3.6e-45  Score=323.62  Aligned_cols=206  Identities=28%  Similarity=0.421  Sum_probs=173.1

Q ss_pred             EEEe-cCCceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccC----cccceeeeecceeeeeeeeecCCCceEEEE
Q 023516           25 FQIL-GGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN----EVGMWQWLFGKTITSVVLRNPGPSDGFVGI   99 (281)
Q Consensus        25 f~i~-g~~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~----~gg~~~~l~Ge~~f~~~~~~~~~g~G~V~l   99 (281)
                      |+|. |+++++|+|+|+|+|+|++|+|+|++|++++++++++..++    .+.+.|+++||++|+++|++ .+++|++++
T Consensus         1 ~~i~~g~~~~~l~v~L~~~~~v~~~~Gsmv~~~g~v~~~~~~~~~g~~~l~~~~~~~~~ges~~~~~~~~-~~g~g~v~l   79 (215)
T PF01987_consen    1 YEIIHGPPFSVLSVTLPPGEPVYAEAGSMVAMSGNVKMKTSMSTGGGGGLGGALKRLLGGESLFLNKFTA-ASGPGEVLL   79 (215)
T ss_dssp             EEEESSSSS-EEEEEE-TT-EEEEECCGEEEEETTEEEEECC-----SSSHHHHHHHHHT--CCEEEEE--CSSSEEEEE
T ss_pred             CEEeeCCCcEEEEEEECCCCeEEEEcCCEEEEeCCceeeeeecccCccchhHHHHHhhcCCcceeEEEEe-cCCCeEEEE
Confidence            8997 88999999999999999999999999999999999762111    12233557899999988874 468999999


Q ss_pred             ecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEEEEEcCC
Q 023516          100 AAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEV  179 (281)
Q Consensus       100 ap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~~~~L~~  179 (281)
                      +|+.||+|..++|++ ++.|+++++++||+++++++++++. ++++++++|+++|+++++|+|.|||+++|+|++++|+|
T Consensus        80 a~~~~g~i~~l~L~~-~~~~~v~~~~~la~~~~v~~~~~~~-~~~~~~~~~~g~~~~~l~G~G~v~l~~~G~i~~i~L~~  157 (215)
T PF01987_consen   80 APNGPGDIVVLELDG-GEGWIVQRGSFLAASGGVSLDVKFQ-GLGKGLFGGEGLFMLKLSGRGTVFLSGYGAIYEIDLAP  157 (215)
T ss_dssp             --SSSEEEEEEECCC-GTEEEEECCGEEEEETTSEEEEEEE---SSSGGGTS-EEEEEEESSCEEEEEECCSEEEEEEE-
T ss_pred             ECCCCCeEEEEEeCC-CCeEEEeCCCEEEecCCcEEEEEEe-eeccccccCCCcEEEEEEEEEEEEEEeCCcEEEEEccC
Confidence            999999999999996 5899999999999999999999987 56667899999999999999999999999999999999


Q ss_pred             CCEEEEcCCeEEEEcCCeEEEEEEe-C---ceeeeeEecceEEEEEEEecEEEEEeccC
Q 023516          180 GEVITVDVSCIVAVTSSVNVQIKYN-G---PIRRAVFGGDNLVTAVVTGPGIVFIQSLP  234 (281)
Q Consensus       180 ge~l~Vd~~~~vA~~~~v~~~i~~~-~---gl~~~~~~GEGl~~~~~~G~G~V~lqs~~  234 (281)
                      ||+++||++|+|||++++++++++. +   ++++.+++|||++ ++|+|||+||+|||+
T Consensus       158 ge~~~Vd~~~lVA~~~~~~~~~~~~~~~~~~~~~~~~~Geg~~-~~~~GpG~V~iQs~~  215 (215)
T PF01987_consen  158 GEEIIVDPGHLVAWSGSLQYDIRRVVGSLGGLKGSLFSGEGLF-CRFTGPGTVLIQSRN  215 (215)
T ss_dssp             EEEEEEEGGGEEEEETTCEEEEEECST---THHHCCCCTS-EE-EEEEEEEEEEEESS-
T ss_pred             CceEEEcCCCEEEECCCccceeEeccchhhhhhcccCCCCeEE-EEEEcCEEEEEEeCC
Confidence            9999999999999999999999998 4   5777888999998 699999999999985

; PDB: 1PG6_A 1YOX_D.

>TIGR00266 conserved hypothetical protein TIGR00266

Probab=99.85  E-value=2.8e-20  Score=165.95  Aligned_cols=131  Identities=21%  Similarity=0.324  Sum_probs=113.9

Q ss_pred             EEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccce---eeeeccceEEEEEE---eeeEEEEee--
Q 023516           97 VGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRN---VIGGIEGFLRQKLT---GQGLAFILA--  168 (281)
Q Consensus        97 V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~---~~~gGeglf~~~~s---G~G~v~L~~--  168 (281)
                      |...|+++  +++++|++ ||++++++|+|++++++|+++++..+++.+   .+++||++|+++++   |+|+|++++  
T Consensus         5 i~~~~~~~--~l~v~L~~-ge~v~ae~GaMv~~~~~v~~~~~~~gG~~~~l~r~~~GEs~f~~~~~a~~g~G~v~lap~~   81 (222)
T TIGR00266         5 IRHRPSYS--MLELTLKP-GERVLAETGAMVSMDGGVELSTECGGGLLGALKRSLGGESLFLNAFHAPQGPGSLQLAPAL   81 (222)
T ss_pred             EecCCCce--EEEEEECC-CCEEEEecCeEEEecCCeEEEEEECChHHHHHHHHhcCCceEEEEEEcCCCCEEEEEeCCC
Confidence            44444455  99999998 899999999999999999999998544432   27899999999984   789999997  


Q ss_pred             CCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516          169 GGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL  233 (281)
Q Consensus       169 ~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~  233 (281)
                      +|+|..+++. ||+++|+.+++||+++++++++++.+ ++ .+++|||+|+++++|+|+||+.+.
T Consensus        82 pg~i~~i~l~-ge~i~v~~ga~lA~~~~V~~~~~~~g-~~-~~~~Geglf~~~~~G~G~V~l~~~  143 (222)
T TIGR00266        82 PGDITHLLLT-KNGIYAQSGAFLAHTSGVEIDTKWGG-LK-TFFAGEGLFLLKLQGKGDVFLSSY  143 (222)
T ss_pred             CcCEEEEEcC-CCEEEEECCeEEEeCCCeEEEEEehh-hc-eeEecCcEEEEEEEeeeEEEEECC
Confidence            5999999885 89999999999999999999998864 54 578999999999999999999984

>COG2013 Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=5.6e-20  Score=163.94  Aligned_cols=124  Identities=25%  Similarity=0.460  Sum_probs=112.1

Q ss_pred             eEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEc-cccce---eeeeccceEEEEEEeeeE--EEEee--CCcEEEEEc
Q 023516          106 RILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLD-QRVRN---VIGGIEGFLRQKLTGQGL--AFILA--GGSVVQKNL  177 (281)
Q Consensus       106 ~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~-~~~~~---~~~gGeglf~~~~sG~G~--v~L~~--~G~i~~~~L  177 (281)
                      .+++++|++ ++++++++|+|++++++|++++++. +++.+   ..++||++|+++++|+|.  |++++  +|+|..++|
T Consensus        17 ~~leveL~~-ge~V~~e~Gam~~~~~~v~~~~~~~~gGl~~a~~r~l~GEs~F~~~~~~~G~~~v~lap~~pG~I~~~~L   95 (227)
T COG2013          17 AVLEVELSP-GESVYAEAGAMVYMDGDVEVKTKMGFGGLLGALKRALGGESLFLTKFEGRGEGEVALAPPYPGDIVALEL   95 (227)
T ss_pred             cEEEEEeCC-CcEEEEecCeEEEccCCEEEEEEecCCcHHHHHHHHhcCCceEEEEEecCCceeEEECCCCCCcEEEEEc
Confidence            489999998 8999999999999999999999986 44422   278999999999996665  88886  699999999


Q ss_pred             CCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516          178 EVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL  233 (281)
Q Consensus       178 ~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~  233 (281)
                      . ||+++|+.++++|++++++|++++.+++  ++++|||+|+.+++|+|.||+++.
T Consensus        96 ~-g~~i~v~~~~FLA~~~~v~~~~~~~~~~--~~~~geGlf~~kl~G~G~v~l~s~  148 (227)
T COG2013          96 G-GESIIVNDGAFLAAEGGVDYGVEFQGGL--GLFGGEGLFLLKLEGTGTVFLSSY  148 (227)
T ss_pred             C-CCEEEEeCCcEEEecCCceEEEEECccc--ceecCCceEEEEEEeeeEEEEECC
Confidence            8 9999999999999999999999999865  689999999999999999999996

>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function

Probab=99.72  E-value=2.7e-17  Score=145.50  Aligned_cols=128  Identities=22%  Similarity=0.437  Sum_probs=103.7

Q ss_pred             CCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEc----cccc---eeeeeccceEEEEEE---eeeEEEEee--CCc
Q 023516          104 LARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLD----QRVR---NVIGGIEGFLRQKLT---GQGLAFILA--GGS  171 (281)
Q Consensus       104 ~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~----~~~~---~~~~gGeglf~~~~s---G~G~v~L~~--~G~  171 (281)
                      +..++.|+|++ ++++++++|+|+|++++++++.++.    +.+.   +.+++||++|+++++   |+|.+++++  +|+
T Consensus         8 ~~~~l~v~L~~-~~~v~~~~Gsmv~~~g~v~~~~~~~~~g~~~l~~~~~~~~~ges~~~~~~~~~~g~g~v~la~~~~g~   86 (215)
T PF01987_consen    8 PFSVLSVTLPP-GEPVYAEAGSMVAMSGNVKMKTSMSTGGGGGLGGALKRLLGGESLFLNKFTAASGPGEVLLAPNGPGD   86 (215)
T ss_dssp             SS-EEEEEE-T-T-EEEEECCGEEEEETTEEEEECC-----SSSHHHHHHHHHT--CCEEEEE-CSSSEEEEE--SSSEE
T ss_pred             CcEEEEEEECC-CCeEEEEcCCEEEEeCCceeeeeecccCccchhHHHHHhhcCCcceeEEEEecCCCeEEEEECCCCCe
Confidence            45699999998 8999999999999999999999652    1121   236789999999886   999999997  577


Q ss_pred             EEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516          172 VVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL  233 (281)
Q Consensus       172 i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~  233 (281)
                      |..++|+++|.++|++++++|+++++++++++. ++.+.+++|+|+++.+++|+|+|||.+.
T Consensus        87 i~~l~L~~~~~~~v~~~~~la~~~~v~~~~~~~-~~~~~~~~~~g~~~~~l~G~G~v~l~~~  147 (215)
T PF01987_consen   87 IVVLELDGGEGWIVQRGSFLAASGGVSLDVKFQ-GLGKGLFGGEGLFMLKLSGRGTVFLSGY  147 (215)
T ss_dssp             EEEEECCCGTEEEEECCGEEEEETTSEEEEEEE---SSSGGGTS-EEEEEEESSCEEEEEEC
T ss_pred             EEEEEeCCCCeEEEeCCCEEEecCCcEEEEEEe-eeccccccCCCcEEEEEEEEEEEEEEeC
Confidence            999999966899999999999999999999999 5766789999999999999999999985

; PDB: 1PG6_A 1YOX_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
1yox_A	250	Structure Of The Conserved Protein Of Unknown Funct		7e-26

>pdb|1YOX|A Chain A, Structure Of The Conserved Protein Of Unknown Function Pa3696 From Pseudomonas Aeruginosa Length = 250

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 11/233 (4%)
Query: 23  IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVG-----MW--- 74
           + ++ILG   Q  +I L P E V+A  G+  + +G +        +   G     +W   
Sbjct: 8   LDYRILGESXQTVEIELDPGETVIAEAGAXNYXTGDIRF-TARXGDGSDGSLLGKLWSAG 66
Query: 75  -QWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDV 133
            + L G+++      N G     V  AAP    ++ +DL   GG L CQ D+FLC+    
Sbjct: 67  KRKLGGESVFXTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGT 126
Query: 134 KVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAV 193
           +V     +R+     G EGF+ QKL G GL F+ AGG+++++ L  GE + VD  C+VA 
Sbjct: 127 RVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLN-GETLRVDTGCLVAF 185
Query: 194 TSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAV 246
           T  ++  ++  G ++  +FGG+ L+   + G G V++QSLPF RL+ RI  A 
Sbjct: 186 TDGIDYDVQLAGGLKSXLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDAT 238

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1yox_A	250	Hypothetical protein PA3696; structural genomics,	4e-53
1pg6_A	243	Hypothetical protein SPYM3_0169; structural genomi	3e-45
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1yox_A Hypothetical protein PA3696; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.30A {Pseudomonas aeruginosa} SCOP: b.82.5.2 Length = 250

 Score =  172 bits (437), Expect = 4e-53
 Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 11/248 (4%)

Query: 17  SPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIY--------IPE 68
           S     + ++ILG   Q  +I L P E V+A  G+M +M+G +              + +
Sbjct: 2   SMASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGK 61

Query: 69  NEVGMWQWLFGKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLC 128
                 + L G+++      N G     V  AAP    ++ +DL   GG L CQ D+FLC
Sbjct: 62  LWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLC 121

Query: 129 SVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVS 188
           +    +V     +R+     G EGF+ QKL G GL F+ AGG+++++ L  GE + VD  
Sbjct: 122 AAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLN-GETLRVDTG 180

Query: 189 CIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTS 248
           C+VA T  ++  ++  G ++  +FGG+ L+   + G G V++QSLPF RL+ RI  A   
Sbjct: 181 CLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDAT-- 238

Query: 249 PNMRENPK 256
              RE  +
Sbjct: 239 FRAREEVR 246

>1pg6_A Hypothetical protein SPYM3_0169; structural genomics, PSI structure initiative, northeast structural genomics consort NESG; 1.70A {Streptococcus pyogenes} SCOP: b.82.5.2 Length = 243

 Score =  152 bits (384), Expect = 3e-45
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 20  DAVIPFQILGGEA-QVCQIMLKPQEKVVARPGSMCFMSGSMEME-NIYIPENEVGMWQWL 77
           D  + F I       + +I L+    V  + GSM + + ++ +   +    + +G     
Sbjct: 10  DNRMRFTIDQNMQFPLVEIDLEHGGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGA 69

Query: 78  FGKTITS----VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDV 133
            G+++ S     + +     DG + +A  +  +I+ ++L     +      AFL      
Sbjct: 70  IGRSMVSGESMFITQAMSNGDGKLALAPNTPGQIVALELG--EKQYRLNDGAFLALDGSA 127

Query: 134 KVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAV 193
           +         + + GG  G       G G     + GS+  K    G  +T+D + +VA 
Sbjct: 128 QYKMERQNIGKALFGGQGGLFVMTTEGLGTLLANSFGSIK-KITLDGGTMTIDNAHVVAW 186

Query: 194 TSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPN 250
           +  ++  I       +++  G+ +V     G G ++IQSL   + +  + R + + +
Sbjct: 187 SRELDYDIHLENGFMQSIGTGEGVV-NTFRGHGEIYIQSLNLEQFAGTLKRYLPTSS 242

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 46/299 (15%), Positives = 86/299 (28%), Gaps = 85/299 (28%)

Query: 9   PFQPYVYQSPQDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPE 68
            F  Y     Q    P+  L    +   + L+P + V+   G    + G           
Sbjct: 125 VFAKYNVSRLQ----PYLKL----RQALLELRPAKNVLID-G----VLG----------- 160

Query: 69  NEVGMWQWLFGKTI-TSVVLRNPGPSDGFV-GIAAPSLARILPIDLAMFGGELLC-QPDA 125
                     GKT     V  +          I   +L      +  +   + L  Q D 
Sbjct: 161 ---------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 126 FLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITV 185
              S +D   S+ +  R+ ++   +   L+ K     L  +L     VQ N +       
Sbjct: 212 NWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLN---VQ-NAKAWNA--F 262

Query: 186 DVSC-IVAVTSSVNVQIKYNGPIRRAVFGGDNLVT------------------------A 220
           ++SC I+  T    V    +      +    + +T                         
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 221 VVTGP---GIV--FIQSLPFH----------RLSQRIARAVTSPNMRENPKFFVQIAIF 264
           + T P    I+   I+               +L+  I  ++      E  K F ++++F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
1yox_A	250	Hypothetical protein PA3696; structural genomics,	100.0
1pg6_A	243	Hypothetical protein SPYM3_0169; structural genomi	100.0
1pg6_A	243	Hypothetical protein SPYM3_0169; structural genomi	99.9
1yox_A	250	Hypothetical protein PA3696; structural genomics,	99.87

>1yox_A Hypothetical protein PA3696; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.30A {Pseudomonas aeruginosa} SCOP: b.82.5.2

Probab=100.00  E-value=1.2e-53  Score=385.38  Aligned_cols=230  Identities=33%  Similarity=0.611  Sum_probs=176.7

Q ss_pred             CCCeeeEEEecCCceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccC----cccc----eeeeecceeeeeeeeec
Q 023516           19 QDAVIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN----EVGM----WQWLFGKTITSVVLRNP   90 (281)
Q Consensus        19 ~~~~~~f~i~g~~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~----~gg~----~~~l~Ge~~f~~~~~~~   90 (281)
                      .+..|+|+|.|+++++|+|+|+|||+|++|+|||+||+++|++++++.+++    .+++    .|+++||++|+++|+++
T Consensus         4 ~~~~m~~~i~g~~~~~l~v~L~~ge~v~ae~GaMv~~~g~i~~~~~~~~g~~gG~~~~l~~a~~r~~tGEs~f~~~~t~~   83 (250)
T 1yox_A            4 ASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNE   83 (250)
T ss_dssp             ---CCEEEEECSSSCEEEEEECTTCEEEECTTCEEEEETTEEEEECC---------------------------EEEEEC
T ss_pred             CCCCceEEEeCCCccEEEEEeCCCCeEEEECCeEEEeeCCeEEEEEecCCCCCchhHhhhhhhhhhhcCCCeEEEEEEec
Confidence            356799999999999999999999999999999999999999999875321    2233    35688999999999998


Q ss_pred             CCCceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCC
Q 023516           91 GPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGG  170 (281)
Q Consensus        91 ~~g~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G  170 (281)
                      ++++|+|+++|+.|++|++++|++.+++|++++++|||++++|++++++.+++++++++|||+|+++++|+|+|||+++|
T Consensus        84 g~~~g~v~la~~~pg~i~~v~L~~~g~~i~~~~ga~lA~~~~v~~~~~~~~~l~~~~~~GEglf~~~~~G~G~v~l~~~G  163 (250)
T 1yox_A           84 GQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGG  163 (250)
T ss_dssp             SSSCEEEEECCSSSEEEEEEEGGGGTTEEEEEGGGEEEEESSCBCCBC------------CCCCEEEEESSSEEEEEEES
T ss_pred             CCCCeEEEEecCCCCcEEEEEecCCCCEEEEeCCeEEEEcCCeeEEEEEccccccceEcCCCcEEEEEEEEEEEEEECCC
Confidence            76789999999999999999998535899999999999999999999987666667999999999999999999999999


Q ss_pred             cEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCCCC
Q 023516          171 SVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSP  249 (281)
Q Consensus       171 ~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp~~  249 (281)
                      +|++++|+ ||+++||++|+|||+++++|++++.+++++.+++|||+|+++|+|||+||||||+.++|+++|.+.-|.+
T Consensus       164 ~I~~~~L~-ge~l~Vd~~~~vA~~~~v~~~i~~~~g~~~~~~gGEGlf~~~~~G~G~V~lqs~~~~~l~~~l~~~~~~~  241 (250)
T 1yox_A          164 TLIRRQLN-GETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRA  241 (250)
T ss_dssp             SEEEEEEE-EEEEEEEGGGEEEECSSEEEEEEECC-----------CEEEEEEEEEEEEEESSCHHHHHHHHHHTTHHH
T ss_pred             eEEEEEeC-CCEEEEECCEEEEECCCccEEEEEcccceeeEEcCCceEEEEEEcCEEEEEEcCCHHHHHhhhhcCCCCc
Confidence            99999998 9999999999999999999999999888888999999998999999999999999999999999876544

>1pg6_A Hypothetical protein SPYM3_0169; structural genomics, PSI structure initiative, northeast structural genomics consort NESG; 1.70A {Streptococcus pyogenes} SCOP: b.82.5.2

Probab=100.00  E-value=2.2e-53  Score=382.16  Aligned_cols=224  Identities=19%  Similarity=0.283  Sum_probs=195.0

Q ss_pred             CCeeeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEccc--Ccccce----e-eeecceeeeeeeeecC
Q 023516           20 DAVIPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPE--NEVGMW----Q-WLFGKTITSVVLRNPG   91 (281)
Q Consensus        20 ~~~~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~--~~gg~~----~-~l~Ge~~f~~~~~~~~   91 (281)
                      +..++|+|.++ ++++++|+|+|||+|++|+|||+||+++|+++++++.+  +.+|++    | +++||++|++++++.+
T Consensus        10 ~~~~~~~I~g~~~~~il~v~L~~ge~v~ae~Gamva~~g~V~~~~~~~~~~~g~ggl~~~l~~~~~~GE~~f~~~~tg~g   89 (243)
T 1pg6_A           10 DNRMRFTIDQNMQFPLVEIDLEHGGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGAIGRSMVSGESMFITQAMSNG   89 (243)
T ss_dssp             --CCEEEECSSCSSCCEEEEECTTCEEEEETTCEEEECTTEEEECTTCC----CSSSHHHHHHHHHHTCCTTEEEEEESS
T ss_pred             cCCCCEEEeCCCCceEEEEEeCCCCEEEEECCcEEEecCCEEEEEEeccCccccchhhhhhhcceecCCCeEEEEEEccC
Confidence            46799999998 89999999999999999999999999999999987421  113332    3 5789999999999753


Q ss_pred             CCceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEE-eeeEEEEeeCC
Q 023516           92 PSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLT-GQGLAFILAGG  170 (281)
Q Consensus        92 ~g~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~s-G~G~v~L~~~G  170 (281)
                        +|+|+++|+.||+|.+++|+  |++++|++++|||++++|++++++.+ +++++++|||+|+++++ |+|+|||+++|
T Consensus        90 --~G~v~la~~~~G~I~~i~L~--g~~l~v~~~~~LA~~~~v~~~i~~~~-l~~~~fgGeG~f~~~l~~G~G~v~l~s~G  164 (243)
T 1pg6_A           90 --DGKLALAPNTPGQIVALELG--EKQYRLNDGAFLALDGSAQYKMERQN-IGKALFGGQGGLFVMTTEGLGTLLANSFG  164 (243)
T ss_dssp             --SEEEEECCSSSBCEEEEEES--SCCEEEETTCEEEEETTSEEEEEECC-CC-------CCCEEEEEESSEEEEEECSB
T ss_pred             --CEEEEEecCCCCcEEEEEeC--CCEEEEECCEEEEECCCceEEEEEEe-eceeEEcCCcceEEEEEecCeEEEEEcCC
Confidence              49999999999999999998  78999999999999999999999974 66789999999999999 99999999999


Q ss_pred             cEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCCCCC
Q 023516          171 SVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPN  250 (281)
Q Consensus       171 ~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp~~~  250 (281)
                      +|++++|+|| +++||++|+|||+++++|++++.+++++.+++|||++ ++|+|||+||||||++++|+++|++++|+++
T Consensus       165 ~i~~~~l~~g-~~~VD~~~vVA~~~~l~~~i~~~~g~~~~~~sGEgl~-~~f~GpG~V~vQs~~~~~l~~~l~~~~p~~~  242 (243)
T 1pg6_A          165 SIKKITLDGG-TMTIDNAHVVAWSRELDYDIHLENGFMQSIGTGEGVV-NTFRGHGEIYIQSLNLEQFAGTLKRYLPTSS  242 (243)
T ss_dssp             CEEEEEEEEE-EEEEEGGGEEEEETTSEEEEECSSCHHHHHHHTCCCE-EEEEEEEEEEEESCCHHHHHHHHGGGC----
T ss_pred             cEEEEEccCC-eEEEcCCcEEEECCCccEEEEECCCeeeeeecCceEE-EEEECCEEEEEEeCCHHHHHHHHHHHcCCCC
Confidence            9999999999 9999999999999999999999999999899999998 9999999999999999999999999999875

>1pg6_A Hypothetical protein SPYM3_0169; structural genomics, PSI structure initiative, northeast structural genomics consort NESG; 1.70A {Streptococcus pyogenes} SCOP: b.82.5.2

Probab=99.90  E-value=6.2e-24  Score=190.59  Aligned_cols=126  Identities=19%  Similarity=0.347  Sum_probs=107.3

Q ss_pred             CeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEc------ccc----ceeeeeccceEEEEEEee--eEEEEee--CC
Q 023516          105 ARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLD------QRV----RNVIGGIEGFLRQKLTGQ--GLAFILA--GG  170 (281)
Q Consensus       105 G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~------~~~----~~~~~gGeglf~~~~sG~--G~v~L~~--~G  170 (281)
                      -.|++|+|++ +|++++++|+|+|++++|++++++.      +++    ++++++||++|+++++|+  |+|++++  +|
T Consensus        23 ~~il~v~L~~-ge~v~ae~Gamva~~g~V~~~~~~~~~~~g~ggl~~~l~~~~~~GE~~f~~~~tg~g~G~v~la~~~~G  101 (243)
T 1pg6_A           23 FPLVEIDLEH-GGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGAIGRSMVSGESMFITQAMSNGDGKLALAPNTPG  101 (243)
T ss_dssp             SCCEEEEECT-TCEEEEETTCEEEECTTEEEECTTCC----CSSSHHHHHHHHHHTCCTTEEEEEESSSEEEEECCSSSB
T ss_pred             ceEEEEEeCC-CCEEEEECCcEEEecCCEEEEEEeccCccccchhhhhhhcceecCCCeEEEEEEccCCEEEEEecCCCC
Confidence            3599999998 8999999999999999999999875      222    234789999999999977  9999965  69


Q ss_pred             cEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEE-ecEEEEEecc
Q 023516          171 SVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVT-GPGIVFIQSL  233 (281)
Q Consensus       171 ~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~-G~G~V~lqs~  233 (281)
                      +|+.++|+ ||+++||.+++|||++++++++++++ +.+.+++|||+|+.+++ |+|+||+|+.
T Consensus       102 ~I~~i~L~-g~~l~v~~~~~LA~~~~v~~~i~~~~-l~~~~fgGeG~f~~~l~~G~G~v~l~s~  163 (243)
T 1pg6_A          102 QIVALELG-EKQYRLNDGAFLALDGSAQYKMERQN-IGKALFGGQGGLFVMTTEGLGTLLANSF  163 (243)
T ss_dssp             CEEEEEES-SCCEEEETTCEEEEETTSEEEEEECC-CC-------CCCEEEEEESSEEEEEECS
T ss_pred             cEEEEEeC-CCEEEEECCEEEEECCCceEEEEEEe-eceeEEcCCcceEEEEEecCeEEEEEcC
Confidence            99999998 99999999999999999999999995 77889999999988999 9999999996

>1yox_A Hypothetical protein PA3696; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.30A {Pseudomonas aeruginosa} SCOP: b.82.5.2

Probab=99.87  E-value=2e-22  Score=181.44  Aligned_cols=150  Identities=15%  Similarity=0.227  Sum_probs=105.1

Q ss_pred             CCcccccCccccccCCCCCeeeEEEecC-CceEEEEEeCC-CCeEEEecCeeeEEeCCeEEEEEEcccCcccc-eeeeec
Q 023516            3 APFFSTPFQPYVYQSPQDAVIPFQILGG-EAQVCQIMLKP-QEKVVARPGSMCFMSGSMEMENIYIPENEVGM-WQWLFG   79 (281)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~f~i~g~-~~~il~v~L~~-Ge~v~ae~Gamva~sg~v~~~~~~~~~~~gg~-~~~l~G   79 (281)
                      .++|+++|+.   ....++..  -+-.+ ..+++.|+|++ ||.+++|+|+|+|++++|+++++++    +++ .+.++|
T Consensus        73 Es~f~~~~t~---~g~~~g~v--~la~~~pg~i~~v~L~~~g~~i~~~~ga~lA~~~~v~~~~~~~----~~l~~~~~~G  143 (250)
T 1yox_A           73 ESVFMTHFTN---EGQGKQHV--AFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFT----KRLGAGFFGG  143 (250)
T ss_dssp             -----EEEEE---CSSSCEEE--EECCSSSEEEEEEEGGGGTTEEEEEGGGEEEEESSCBCCBC----------------
T ss_pred             CCeEEEEEEe---cCCCCeEE--EEecCCCCcEEEEEecCCCCEEEEeCCeEEEEcCCeeEEEEEc----cccccceEcC
Confidence            3678888883   32112222  23222 46899999999 9999999999999999999998873    223 234779


Q ss_pred             ceeeeeeeeecCCCceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEE
Q 023516           80 KTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLT  159 (281)
Q Consensus        80 e~~f~~~~~~~~~g~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~s  159 (281)
                      |++|.++++    ++|+|++++  +|+|+.++|+  ||+++|+++++||++++|++++++.+++++.+++|||+|+.+++
T Consensus       144 Eglf~~~~~----G~G~v~l~~--~G~I~~~~L~--ge~l~Vd~~~~vA~~~~v~~~i~~~~g~~~~~~gGEGlf~~~~~  215 (250)
T 1yox_A          144 EGFILQKLE----GDGLVFVHA--GGTLIRRQLN--GETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLK  215 (250)
T ss_dssp             CCCCEEEEE----SSSEEEEEE--ESSEEEEEEE--EEEEEEEGGGEEEECSSEEEEEEECC-----------CEEEEEE
T ss_pred             CCcEEEEEE----EEEEEEEEC--CCeEEEEEeC--CCEEEEECCEEEEECCCccEEEEEcccceeeEEcCCceEEEEEE
Confidence            999998888    569999995  7899999998  68999999999999999999999987776678999999999999


Q ss_pred             eeeEEEEeeC
Q 023516          160 GQGLAFILAG  169 (281)
Q Consensus       160 G~G~v~L~~~  169 (281)
                      |+|+|||++.
T Consensus       216 G~G~V~lqs~  225 (250)
T 1yox_A          216 GSGTVWLQSL  225 (250)
T ss_dssp             EEEEEEEESS
T ss_pred             cCEEEEEEcC
Confidence            9999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1yoxa1	240	b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Ps	2e-67
d1pg6a_	227	b.82.5.2 (A:) Hypothetical protein SPyM3_0169 (SPy	3e-45

>d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]} Length = 240

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein PA3696
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  207 bits (528), Expect = 2e-67
 Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 11/242 (4%)

Query: 23  IPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLF---- 78
           + ++ILG   Q  +I L P E V+A  G+M +M+G +         ++  +   L+    
Sbjct: 2   LDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGK 61

Query: 79  ----GKTITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVK 134
               G+++      N G     V  AAP    ++ +DL   GG L CQ D+FLC+    +
Sbjct: 62  RKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTR 121

Query: 135 VSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVT 194
           V     +R+     G EGF+ QKL G GL F+ AGG+++++ L  GE + VD  C+VA T
Sbjct: 122 VGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLN-GETLRVDTGCLVAFT 180

Query: 195 SSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSPNMREN 254
             ++  ++  G ++  +FGG+ L+   + G G V++QSLPF RL+ RI  A  +   RE 
Sbjct: 181 DGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDA--TFRAREE 238

Query: 255 PK 256
            +
Sbjct: 239 VR 240

>d1pg6a_ b.82.5.2 (A:) Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0176) {Streptococcus pyogenes [TaxId: 1314]} Length = 227

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein SPyM3 0169 (SPyM18 0222, SPS0176)
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  150 bits (380), Expect = 3e-45
 Identities = 41/226 (18%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 25  FQILGGEA-QVCQIMLKPQEKVVARPGSMCFMSGSMEMEN-IYIPENEVGMWQWLFGKTI 82
           F I       + +I L+    V  + GSM + + ++ +   +    + +G      G+++
Sbjct: 4   FTIDQNMQFPLVEIDLEHGGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGAIGRSM 63

Query: 83  TS----VVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNT 138
            S     + +     DG + +A  +  +I+ ++L     +      AFL      +    
Sbjct: 64  VSGESMFITQAMSNGDGKLALAPNTPGQIVALELGE--KQYRLNDGAFLALDGSAQYKME 121

Query: 139 LDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVVQKNLEVGEVITVDVSCIVAVTSSVN 198
                + + GG  G       G G     + GS+ +  L+ G +  +D + +VA +  ++
Sbjct: 122 RQNIGKALFGGQGGLFVMTTEGLGTLLANSFGSIKKITLDGGTMT-IDNAHVVAWSRELD 180

Query: 199 VQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIAR 244
             I       +++  G+ +V     G G ++IQSL   + +  + R
Sbjct: 181 YDIHLENGFMQSIGTGEGVV-NTFRGHGEIYIQSLNLEQFAGTLKR 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1yoxa1	240	Hypothetical protein PA3696 {Pseudomonas aeruginos	100.0
d1pg6a_	227	Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0	100.0
d1pg6a_	227	Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0	99.81
d1yoxa1	240	Hypothetical protein PA3696 {Pseudomonas aeruginos	99.78

>d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein PA3696
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=5e-57  Score=403.16  Aligned_cols=227  Identities=33%  Similarity=0.616  Sum_probs=177.7

Q ss_pred             eeeEEEecCCceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccCccc--------ceeeeecceeeeeeeeecCCC
Q 023516           22 VIPFQILGGEAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPENEVG--------MWQWLFGKTITSVVLRNPGPS   93 (281)
Q Consensus        22 ~~~f~i~g~~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~~gg--------~~~~l~Ge~~f~~~~~~~~~g   93 (281)
                      .|+|+|.|+++++|+|+|+|||+|++|+|||+||+++|++++++.+++.++        +.|+++||++|+++|++++++
T Consensus         1 ~m~y~I~G~~~~~l~v~L~~ge~v~ae~GaMv~m~g~v~~~t~~~gg~~~g~~g~l~~~~~r~l~GEs~f~~~~~~~g~g   80 (240)
T d1yoxa1           1 ELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQG   80 (240)
T ss_dssp             CCEEEEECSSSCEEEEEECTTCEEEECTTCEEEEETTEEEEECC---------------------------EEEEECSSS
T ss_pred             CceEEEeCCCccEEEEEeCCCCEEEEEcCeEEEeeCCEEEEEEECCCCccchhhHHHHHHHHHhcCCceEEEEEEecCCC
Confidence            489999999999999999999999999999999999999999986543222        346689999999999998888


Q ss_pred             ceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEE
Q 023516           94 DGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVV  173 (281)
Q Consensus        94 ~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~  173 (281)
                      +|+|+++|+.||+|+.++|++.++++++++++|||++++|++++++.++..+++++|||+|+++++|+|.|||+++|+|+
T Consensus        81 ~g~v~~a~~~~G~I~~i~L~~~g~~i~v~~~~fLA~~~~v~~~~~~~~~~~~~~~gg~G~f~~~lsG~G~v~l~~~G~i~  160 (240)
T d1yoxa1          81 KQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLI  160 (240)
T ss_dssp             CEEEEECCSSSEEEEEEEGGGGTTEEEEEGGGEEEEESSCBCCBC------------CCCCEEEEESSSEEEEEEESSEE
T ss_pred             ceeEEECCCCCCcEEEEEeccCCCEEEEeCCcEEEEcCCceEEEEEeecccccccCCcccEEEEEEeCcEEEEECCceEE
Confidence            99999999999999999997547899999999999999999999987667778999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhCCCC
Q 023516          174 QKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAVTSP  249 (281)
Q Consensus       174 ~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~lp~~  249 (281)
                      +++| +||+++||++|+|||+++++|++++.+++++.+++|||+++++|+|||+||+||||+++|++||.+++|++
T Consensus       161 ~~~l-~ge~l~VD~~~vVA~~~~l~~~i~~~~g~~~~~~~GEGl~~~~f~G~G~V~iQsr~~~~la~~l~~~~~~~  235 (240)
T d1yoxa1         161 RRQL-NGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRA  235 (240)
T ss_dssp             EEEE-EEEEEEEEGGGEEEECSSEEEEEEECC-----------CEEEEEEEEEEEEEESSCHHHHHHHHHHTTHHH
T ss_pred             EEEc-cCCeEEEcCCeEEEEcCCccceEEEcCChhheeecccceEEEEEEeCeEEEEECCCHHHHHHHHHhhCCCc
Confidence            9999 59999999999999999999999999999999999999887899999999999999999999999998865

>d1pg6a_ b.82.5.2 (A:) Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0176) {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein SPyM3 0169 (SPyM18 0222, SPS0176)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=4e-52  Score=368.49  Aligned_cols=219  Identities=18%  Similarity=0.290  Sum_probs=192.1

Q ss_pred             eeeEEEecC-CceEEEEEeCCCCeEEEecCeeeEEeCCeEEEEEEcccC--cccce----e-eeecceeeeeeeeecCCC
Q 023516           22 VIPFQILGG-EAQVCQIMLKPQEKVVARPGSMCFMSGSMEMENIYIPEN--EVGMW----Q-WLFGKTITSVVLRNPGPS   93 (281)
Q Consensus        22 ~~~f~i~g~-~~~il~v~L~~Ge~v~ae~Gamva~sg~v~~~~~~~~~~--~gg~~----~-~l~Ge~~f~~~~~~~~~g   93 (281)
                      .|+|+|.++ ++++|+|+|+|||+|++|+|||+||+++|+++++..+.+  .++++    | +++||++|++.+++  ++
T Consensus         1 ~m~~~i~~~~~~~~l~v~L~~ge~v~ae~GaMv~~~g~i~~~t~~~g~g~~~g~~~~~l~r~~~~Ges~f~~~~~~--~g   78 (227)
T d1pg6a_           1 RMRFTIDQNMQFPLVEIDLEHGGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGAIGRSMVSGESMFITQAMS--NG   78 (227)
T ss_dssp             CCEEEECSSCSSCCEEEEECTTCEEEEETTCEEEECTTEEEECTTCC----CSSSHHHHHHHHHHTCCTTEEEEEE--SS
T ss_pred             CcEEEECCCCcceEEEEEeCCCCEEEEEcCeeEEecCCeEEEEEecCCCCccchhhHHhhhheecCCceEEEEEec--CC
Confidence            489999876 679999999999999999999999999999999875322  23332    3 47899999988876  47


Q ss_pred             ceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEeeeEEEEeeCCcEE
Q 023516           94 DGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQGLAFILAGGSVV  173 (281)
Q Consensus        94 ~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~G~v~L~~~G~i~  173 (281)
                      +|+|+++|+.||+|++++|+  ++.+++++++|||++++|++++++.+.....+++++|+|+++++|+|.|||+++|+|+
T Consensus        79 ~g~v~la~~~~g~I~~i~L~--~~~~~v~~~~~LA~~~~v~~~~~~~~~~~~~~~g~~g~f~~~~~G~G~v~l~~~G~i~  156 (227)
T d1pg6a_          79 DGKLALAPNTPGQIVALELG--EKQYRLNDGAFLALDGSAQYKMERQNIGKALFGGQGGLFVMTTEGLGTLLANSFGSIK  156 (227)
T ss_dssp             SEEEEECCSSSBCEEEEEES--SCCEEEETTCEEEEETTSEEEEEECCCC-------CCCEEEEEESSEEEEEECSBCEE
T ss_pred             cEEEEECCCCCCEEEEEEcc--CCcEEEeCCeEEEEcCCceEEEEEEEecccceecccceEEEEEECCEEEEEEcCCcEE
Confidence            89999999999999999998  5689999999999999999999987655555678899999999999999999999999


Q ss_pred             EEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEeccChhHHHHHHHhhC
Q 023516          174 QKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSLPFHRLSQRIARAV  246 (281)
Q Consensus       174 ~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~~~~~l~~~~~~~l  246 (281)
                      +++++ +|+++||++|+|||+++++|++++.+++++.+++|||++ ++|+|||+||||||++++|+++|+|+|
T Consensus       157 ~~~~~-~~~~~VD~~~~VA~~~~l~~~v~~~~g~~~~~~sGEgl~-~~ftGpG~V~vQs~~~~~~~~~l~~~l  227 (227)
T d1pg6a_         157 KITLD-GGTMTIDNAHVVAWSRELDYDIHLENGFMQSIGTGEGVV-NTFRGHGEIYIQSLNLEQFAGTLKRYL  227 (227)
T ss_dssp             EEEEE-EEEEEEEGGGEEEEETTSEEEEECSSCHHHHHHHTCCCE-EEEEEEEEEEEESCCHHHHHHHHGGGC
T ss_pred             EEEcC-CCcEEEeCCeEEEEcCCcceEEEEcCChhheeeccceEE-EEEEeCeEEEEEeCCHHHHHHHHHhhC
Confidence            99985 678999999999999999999999999999999999997 899999999999999999999999986

>d1pg6a_ b.82.5.2 (A:) Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0176) {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein SPyM3 0169 (SPyM18 0222, SPS0176)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=2.6e-20  Score=163.37  Aligned_cols=129  Identities=16%  Similarity=0.267  Sum_probs=106.5

Q ss_pred             cCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccc----------cceeeeeccceEEEEEE--eeeEEEEee
Q 023516          101 APSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQR----------VRNVIGGIEGFLRQKLT--GQGLAFILA  168 (281)
Q Consensus       101 p~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~----------~~~~~~gGeglf~~~~s--G~G~v~L~~  168 (281)
                      |.++  +++++|++ ||++++++|+|++++++|+++++..+.          +.+.+++||++|+++++  |+|.|++++
T Consensus        10 ~~~~--~l~v~L~~-ge~v~ae~GaMv~~~g~i~~~t~~~g~g~~~g~~~~~l~r~~~~Ges~f~~~~~~~g~g~v~la~   86 (227)
T d1pg6a_          10 MQFP--LVEIDLEH-GGSVYLQQGSMVYHTENVTLNTKLNGKGSGLGKLVGAIGRSMVSGESMFITQAMSNGDGKLALAP   86 (227)
T ss_dssp             CSSC--CEEEEECT-TCEEEEETTCEEEECTTEEEECTTCC----CSSSHHHHHHHHHHTCCTTEEEEEESSSEEEEECC
T ss_pred             Ccce--EEEEEeCC-CCEEEEEcCeeEEecCCeEEEEEecCCCCccchhhHHhhhheecCCceEEEEEecCCcEEEEECC
Confidence            3444  89999998 899999999999999999999886431          11236899999999986  778999986


Q ss_pred             --CCcEEEEEcCCCCEEEEcCCeEEEEcCCeEEEEEEeCceeeeeEecceEEEEEEEecEEEEEecc
Q 023516          169 --GGSVVQKNLEVGEVITVDVSCIVAVTSSVNVQIKYNGPIRRAVFGGDNLVTAVVTGPGIVFIQSL  233 (281)
Q Consensus       169 --~G~i~~~~L~~ge~l~Vd~~~~vA~~~~v~~~i~~~~gl~~~~~~GEGl~~~~~~G~G~V~lqs~  233 (281)
                        +|+|+.++|. ++.++|++++++|+++++++++++.+.....+++|||+|+++++|+|.||+++.
T Consensus        87 ~~~g~I~~i~L~-~~~~~v~~~~~LA~~~~v~~~~~~~~~~~~~~~g~~g~f~~~~~G~G~v~l~~~  152 (227)
T d1pg6a_          87 NTPGQIVALELG-EKQYRLNDGAFLALDGSAQYKMERQNIGKALFGGQGGLFVMTTEGLGTLLANSF  152 (227)
T ss_dssp             SSSBCEEEEEES-SCCEEEETTCEEEEETTSEEEEEECCCC-------CCCEEEEEESSEEEEEECS
T ss_pred             CCCCEEEEEEcc-CCcEEEeCCeEEEEcCCceEEEEEEEecccceecccceEEEEEECCEEEEEEcC
Confidence              5999999997 667999999999999999999999876677677889999999999999999996

>d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: TRAP-like
family: PA3696/SPS0176-like
domain: Hypothetical protein PA3696
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=3.5e-19  Score=157.26  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=102.4

Q ss_pred             CcccccCccccccCCCCCeeeEEEecC-CceEEEEEeCC-CCeEEEecCeeeEEeCCeEEEEEEcccCcccceeeeecce
Q 023516            4 PFFSTPFQPYVYQSPQDAVIPFQILGG-EAQVCQIMLKP-QEKVVARPGSMCFMSGSMEMENIYIPENEVGMWQWLFGKT   81 (281)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~f~i~g~-~~~il~v~L~~-Ge~v~ae~Gamva~sg~v~~~~~~~~~~~gg~~~~l~Ge~   81 (281)
                      .+|+|+|+   +++  ++....-+..+ ...|+.++|++ |+++++++++++|++++|++++++..+   .....+.||.
T Consensus        68 s~f~~~~~---~~g--~g~g~v~~a~~~~G~I~~i~L~~~g~~i~v~~~~fLA~~~~v~~~~~~~~~---~~~~~~gg~G  139 (240)
T d1yoxa1          68 SVFMTHFT---NEG--QGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKR---LGAGFFGGEG  139 (240)
T ss_dssp             ----EEEE---ECS--SSCEEEEECCSSSEEEEEEEGGGGTTEEEEEGGGEEEEESSCBCCBC---------------CC
T ss_pred             ceEEEEEE---ecC--CCceeEEECCCCCCcEEEEEeccCCCEEEEeCCcEEEEcCCceEEEEEeec---ccccccCCcc
Confidence            57788887   333  12222223222 34899999975 899999999999999999998886322   2223355899


Q ss_pred             eeeeeeeecCCCceEEEEecCCCCeEEEEEccCCCCeEEEcCCeEEEEeCCEEEEEEEccccceeeeeccceEEEEEEee
Q 023516           82 ITSVVLRNPGPSDGFVGIAAPSLARILPIDLAMFGGELLCQPDAFLCSVNDVKVSNTLDQRVRNVIGGIEGFLRQKLTGQ  161 (281)
Q Consensus        82 ~f~~~~~~~~~g~G~V~lap~~~G~I~~i~L~~~ge~i~v~~ga~LA~~~~V~~~~~~~~~~~~~~~gGeglf~~~~sG~  161 (281)
                      +|..+++    |+|.|+++  ..|.|++++|+  ||+++|++++++|++++++++++..+++.+.+++|||+|+++++|+
T Consensus       140 ~f~~~ls----G~G~v~l~--~~G~i~~~~l~--ge~l~VD~~~vVA~~~~l~~~i~~~~g~~~~~~~GEGl~~~~f~G~  211 (240)
T d1yoxa1         140 FILQKLE----GDGLVFVH--AGGTLIRRQLN--GETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGS  211 (240)
T ss_dssp             CCEEEEE----SSSEEEEE--EESSEEEEEEE--EEEEEEEGGGEEEECSSEEEEEEECC-----------CEEEEEEEE
T ss_pred             cEEEEEE----eCcEEEEE--CCceEEEEEcc--CCeEEEcCCeEEEEcCCccceEEEcCChhheeecccceEEEEEEeC
Confidence            9887776    67999999  57899999995  7899999999999999999999998888887999999999999999


Q ss_pred             eEEEEee
Q 023516          162 GLAFILA  168 (281)
Q Consensus       162 G~v~L~~  168 (281)
                      |+||+++
T Consensus       212 G~V~iQs  218 (240)
T d1yoxa1         212 GTVWLQS  218 (240)
T ss_dssp             EEEEEES
T ss_pred             eEEEEEC
Confidence            9999986