Citrus Sinensis ID: 023526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccEEEcHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccEEEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccccccEEEEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEcccccccccccccEEEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHcccccEEEEEcccHccccHHHHHHcccHcHccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccc
Coil and Loop (DISEMBL)
MEFVLEEgkhlsescsnlilpalsignVGQLAVDLLVSStgaetvgylddqfvlpcvgndayrpsprgdlalplqayessssgltliqqrspVVKGMMVEYAKNLADFAAASGNKHVVVLSALdfgrlqridmssgpqiyylsstsvdgtddyCEQLGWKRlqeynpaqrgwKYLSSlaegdvgdennftfeddleeedyypslpfaALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFlrlnpdnvrgddgekwivpfswmtvygpppdmsmf
Flexible Loop (DISEMBL)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYessssgltliqqrSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSlaegdvgdeNNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLnpdnvrgddgekwivpfswMTVYGPPPDMSMF
Low Complexity Region (SEG)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF
Disordered region (IsUnstruct)
*************SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAY******************************VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYG********
Disordered Region (DISOPRED)
*********HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQ**DMSSGPQIYYLSSTSV**************************YLSSLAE******************DYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPD*V***D**KWIVPFSWMTVYGPPP****F
Disordered Region (DISEMBL)
**********LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF
Disordered Region (DISPRO)
*EF*LEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDM*MF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
A7SGU6	244	Proteasome assembly chape	N/A	no	0.740	0.852	0.334	1e-22
Q1LXS2	260	Proteasome assembly chape	yes	no	0.832	0.9	0.276	1e-20
Q7SYV1	259	Proteasome assembly chape	N/A	no	0.836	0.907	0.291	2e-19
Q869S8	269	Proteasome assembly chape	yes	no	0.864	0.903	0.264	9e-19
Q5XGC5	261	Proteasome assembly chape	yes	no	0.829	0.892	0.263	1e-18
Q969U7	264	Proteasome assembly chape	yes	no	0.832	0.886	0.258	5e-17
Q2NL24	264	Proteasome assembly chape	yes	no	0.829	0.882	0.237	1e-16
Q9EST4	264	Proteasome assembly chape	yes	no	0.829	0.882	0.253	6e-16
P36040	267	Proteasome assembly chape	yes	no	0.836	0.880	0.221	0.0006

>sp|A7SGU6|PSMG2_NEMVE Proteasome assembly chaperone 2 OS=Nematostella vectensis GN=psmg2 PE=3 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 31/239 (12%)

Query: 17  NLILPALSIGNVGQLAVDLLVSS--TGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLAL 72
            LILPA+SIGNVGQLA DL +SS  +    +GYL D  +LP VGNDA+      +G+L L
Sbjct: 18  TLILPAVSIGNVGQLATDLTISSLSSSRHLIGYLHDASILPVVGNDAFARLGHEKGELNL 77

Query: 73  PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRID 132
             + Y+S+   L ++QQR+P+ KG    Y + L  +      K VV+LS++      R+D
Sbjct: 78  SAEVYQSTEKRLVIVQQRAPISKGHYANYCQKLLAWIKRCSFKQVVLLSSI--SATDRVD 135

Query: 133 MS-SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTF 191
               G  + Y++++         ++L W +L++        K    L     G      F
Sbjct: 136 AQLQGSPLRYMTTSVSQQLSSSFDKLSWVQLEKRPKFPDMTKESDELQFYLPGGGVTKRF 195

Query: 192 EDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLN 250
            D  E+ED    +P A               L+ +CSEGDN+ADA +L      FL LN
Sbjct: 196 FDRCEKED----VPLAV--------------LMTFCSEGDNIADAVSL------FLYLN 230

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.
Nematostella vectensis (taxid: 45351)

>sp|Q1LXS2|PSMG2_DANRE Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 26/260 (10%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            LILPA+S+GNVGQLAVDLL+S+     VGY     ++P  GN+ Y  S      L+   
Sbjct: 16  TLILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y      L ++Q R+P+++  +  + K +  +  +SG    V+LS+    +     + 
Sbjct: 76  EVYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAHAYQRDDQQLH 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
             P  Y LS +         E+LGW+ +++                      + F    D
Sbjct: 136 GTPLRYMLSPSLEKEERQRFEELGWREMEKI---------------------SVFPGISD 174

Query: 195 LEEEDYYPSLPFAA-LFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDN 253
            E+  Y P       L++      + +  +L +CSEGDN+ DAF L +    +L L    
Sbjct: 175 SEQRLYIPGGGVTKCLYTDCCTEDVPMAVVLIFCSEGDNIPDAFALINCLNDWLHLLEKP 234

Query: 254 VRGDDGEKWIVPFSWMTVYG 273
            +G    +W VP SW  ++G
Sbjct: 235 TQGS--VQWRVPPSWKLLFG 252

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Danio rerio (taxid: 7955)

>sp|Q7SYV1|PSMG2_XENLA Proteasome assembly chaperone 2 OS=Xenopus laevis GN=psmg2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 36/271 (13%)

Query: 14  SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLA 71
           S S L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VGN+ Y  +     +L 
Sbjct: 13  SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELC 72

Query: 72  LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRI 131
              + Y   S  L ++Q RS V+K     + + L  +        V+ LS+         
Sbjct: 73  TNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDK 132

Query: 132 DMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTF 191
            +   P  Y ++        D   +L WK +++          +SS  E           
Sbjct: 133 QLFGTPFRYLVTPALQKSVADVLSELEWKEMEK----------VSSYPE----------- 171

Query: 192 EDDLEEEDYYPSLPFAALF---SCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR 248
            +D E++ + P   F   F    C +   L++  +L +CSEGDN+ DAF+L +   ++L 
Sbjct: 172 LNDNEKKLFIPGGGFTKAFYNDCCLE--DLQMAVVLKFCSEGDNVPDAFSLLNQVNEWLH 229

Query: 249 L-NPDNVRGDDGEKWIVPFSWMTVYG---PP 275
           L  P N  GD   KW  P SW  ++G   PP
Sbjct: 230 LVEPTN--GD--VKWKSPRSWRLLFGSGLPP 256

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Xenopus laevis (taxid: 8355)

>sp|Q869S8|PSMG2_DICDI Proteasome assembly chaperone 2 OS=Dictyostelium discoideum GN=psmG2 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 25/268 (9%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLALPLQ 75
           LI P+L++GN+GQL +D+L+ S   + +G++ D+ + P +GND +    +  G ++  ++
Sbjct: 22  LIWPSLTLGNIGQLTIDVLICSFEFKRIGFIVDENITPIIGNDCFTTLDNNNGIMSTSIE 81

Query: 76  AYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
            Y+SS    +TL+QQRSP+V G +  +++NL  +  A   K ++ LS+ +  +  R+D  
Sbjct: 82  VYQSSLFPSITLVQQRSPIVDGRIPNFSENLFKWINAEEIKEILFLSSSNANK--RVDSQ 139

Query: 135 -SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFED 193
            +G Q+ ++ S +VD            +L E N ++      S   E  +   N  T   
Sbjct: 140 LTGSQVRFIKSDNVDKNI-------ISKLNEMNISEMELTVQSPEGET-IQLSNRLT--- 188

Query: 194 DLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDN 253
            L +E Y          +      +   CL  +CSEG N  +A  +++    F++    N
Sbjct: 189 GLAKEIYST----INSKNNDNNNKVSFLCLNLFCSEGYNTNEALQMSNLIYNFIK----N 240

Query: 254 VRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
                  +   P  W  + GP  D S+F
Sbjct: 241 QESPSSPQLKTPSCWKLLQGPTFDQSLF 268

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5XGC5|PSMG2_XENTR Proteasome assembly chaperone 2 OS=Xenopus tropicalis GN=psmg2 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPL 74
            L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VG++ Y        +L    
Sbjct: 16  TLLLPAISVGNVGQLAIDLIISTLKIPKVGYFYTDCLVPMVGSNPYETDEENAKELCTNA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L ++Q RS V+K     + + L  +        V++LS+          + 
Sbjct: 76  EVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVILLSSCHAYHRDDTQLF 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
             P  Y ++        D  ++L WK +++                      +++   +D
Sbjct: 136 GTPFRYLVTPALQKSVADVLKELEWKEMEKV---------------------SSYPGLND 174

Query: 195 LEEEDYYPSLPFAALF---SCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNP 251
            E+  + P   F   F    C +   L++  +L +CSEGDN+ DAF+L +   ++L L  
Sbjct: 175 NEKRVFIPGGGFTKRFYDDCCLE--DLQMAVVLKFCSEGDNVPDAFSLLNQVNEWLHLVA 232

Query: 252 DNVRGDDGEKWIVPFSWMTVYG 273
            +  GD   KW  P SW  ++G
Sbjct: 233 -STNGDVLAKWKAPGSWQLLFG 253

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with psmg1.

Xenopus tropicalis (taxid: 8364)

>sp|Q969U7|PSMG2_HUMAN Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 37/271 (13%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSP--RGDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L  +Q RS  +K     + + L  +  +SG   V+VLS+    +   + + 
Sbjct: 76  EVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYN--PAQRGWKYLSSLAEGDVGDENNFTFE 192
           S P  Y L+ +      +  + L W+ +++    P     ++   +  G +      T  
Sbjct: 136 STPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITK----TLY 191

Query: 193 DDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR-LNP 251
           D+                SC  ++ +++  LL + SEGDN+ DA  L +   ++L+ L P
Sbjct: 192 DE----------------SC--SKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKP 233

Query: 252 DNVRGDD----GEKWIVPFSWMTVYG---PP 275
                DD      +W +P SW  ++G   PP
Sbjct: 234 ---LSDDPTVSASRWKIPSSWRLLFGSGLPP 261

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Homo sapiens (taxid: 9606)

>sp|Q2NL24|PSMG2_BOVIN Proteasome assembly chaperone 2 OS=Bos taurus GN=PSMG2 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 32/265 (12%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSINA 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L  +Q RS  +K     + + L  +   SG   VVVLS+        + + 
Sbjct: 76  EVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
           S P  Y L+ +      +  + L W+ + E  P                          +
Sbjct: 136 STPFRYLLTPSMQKSVQNKIQSLNWEEM-EKTPCI-----------------------PE 171

Query: 195 LEEEDYYPSLPFAALFSCFKARG----LKVTCLLCYCSEGDNMADAFNLADAACKFLRLN 250
           +++ ++   +P   +       G    + +  LL + SEGDN+ DA  L +   ++L++ 
Sbjct: 172 IDDSEFCVRVPGGGITKLLYDEGCSKEIPIAILLKFVSEGDNIPDALGLVEYLNEWLQII 231

Query: 251 PDNVRGDDGEK--WIVPFSWMTVYG 273
             +          W +P SW  ++G
Sbjct: 232 KPHCEDPTASSLPWKMPSSWRLLFG 256

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Bos taurus (taxid: 9913)

>sp|Q9EST4|PSMG2_MOUSE Proteasome assembly chaperone 2 OS=Mus musculus GN=Psmg2 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 39/272 (14%)

Query: 17  NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
            L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y        +L++  
Sbjct: 16  TLLMPAVSVGNVGQLAIDLIISTLNMCKIGYFYTDCLVPMVGNNPYATEEENSNELSINT 75

Query: 75  QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
           + Y   S  L ++Q RS  +K     + + L  +  +SG   ++VLS+          + 
Sbjct: 76  EVYSLPSKKLVVLQLRSIFIKYKSKSFCEKLLAWVESSGCARIIVLSSSHSYHRNDAQLR 135

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYN--PAQRGWKYLSSLAEGDVGDENNFTFE 192
           S P  Y L+        +  + L W  +++    P     ++   +  G +      T  
Sbjct: 136 STPFRYLLTPCLQKSVQNKIKSLNWLEMEKSRCIPEMSDSEFCIRIPGGGITK----TLY 191

Query: 193 DDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR-LNP 251
           D+                SC  ++ +++  LL + SEGDN+ DA +L +   ++L+ + P
Sbjct: 192 DE----------------SC--SKEIQMAVLLKFVSEGDNIPDAVSLVEYLNEWLQIIKP 233

Query: 252 DNVRGDDGE-----KWIVPFSWMTVYG---PP 275
            N    DG       W +P SW  ++G   PP
Sbjct: 234 CN----DGPMASALPWKIPSSWRLLFGSGLPP 261

Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. The PSMG1-PSMG2 heterodimer binds to the PSMA5 and PSMA7 proteasome subunits, promotes assembly of the proteasome alpha subunits into the heteroheptameric alpha ring and prevents alpha ring dimerization.

Mus musculus (taxid: 10090)

>sp|P36040|POC2_YEAST Proteasome assembly chaperone 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADD66 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 41/276 (14%)

Query: 16  SNLILPALSIGNVGQLAVDLLVSSTGA--ETVGYLDDQFVLPCV--------GNDAYRPS 65
           S L+LP +S+GN+ QL++D L++S     E +  LD ++++  V        G+D+    
Sbjct: 2   SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKD 61

Query: 66  PRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKN-----LADFAAASGNKHVVVL 120
                +  L+ + +   GL  IQQR+P+V    V Y  N     +  F +      + + 
Sbjct: 62  ADMKYSSALEVFYNKKRGLFAIQQRTPLVS---VNYLNNFIVEIILPFLSKYNISEICIW 118

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
            +L     +   +    ++Y L        DD  E L    L +       W + +    
Sbjct: 119 DSLYAMEDENGVIVRPQEVYSLGEFYF---DDEAELLSNLHLNDQESMVNNWLHFTPT-- 173

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLK-VTCLLCYCSEGDNMADA--F 237
                    +F+D +  +     + F  L +  + + L+ +    C  +EGDN  D+  F
Sbjct: 174 ---------SFQDKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDSQQF 224

Query: 238 NLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYG 273
                + K ++  P  V      K++ P SW   YG
Sbjct: 225 LQWIISQKVIKNAPPIV------KFVRPISWQGAYG 254

Involved in 20S proteasome assembly. Required for maximal proteasome activity. Affects the chymotrypsin-like activity of the proteasome. Can be degraded by the proteasome. Involved in the endoplasmic reticulum-associated degradation (ERAD).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
147820884	282	hypothetical protein VITISV_023239 [Viti	1.0	0.996	0.734	1e-118
225428608	282	PREDICTED: proteasome assembly chaperone	1.0	0.996	0.730	1e-117
224077776	280	predicted protein [Populus trichocarpa]	0.996	1.0	0.715	1e-116
356538845	280	PREDICTED: proteasome assembly chaperone	0.996	1.0	0.711	1e-114
255637497	280	unknown [Glycine max]	0.996	1.0	0.704	1e-113
356545347	280	PREDICTED: proteasome assembly chaperone	0.996	1.0	0.701	1e-113
255556175	281	conserved hypothetical protein [Ricinus	1.0	1.0	0.718	1e-110
388490722	280	unknown [Lotus japonicus]	0.996	1.0	0.708	1e-110
297834806	281	hypothetical protein ARALYDRAFT_479410 [	1.0	1.0	0.672	1e-108
449438454	277	PREDICTED: proteasome assembly chaperone	0.985	1.0	0.665	1e-106

>gi|147820884|emb|CAN60895.1| hypothetical protein VITISV_023239 [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/282 (73%), Positives = 241/282 (85%), Gaps = 1/282 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGKHL+  CS L+LPALSIGNVGQLAVDLL+SST  E +GYLDD +VLPCVGND
Sbjct: 1   MEFIVEEGKHLNNDCSTLVLPALSIGNVGQLAVDLLISSTRTERIGYLDDPYVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P PRG++ALPL+AY+SS + LTL+QQRSPV+KGMMVE+AKNLADFAA SG KHV+VL
Sbjct: 61  AYGPIPRGEVALPLEAYDSSLNKLTLVQQRSPVLKGMMVEFAKNLADFAADSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ QRIDMSSG QIYY+SS ++DGTDD CE+LGWK+L EYNPAQR WKYLS+LA 
Sbjct: 121 SSLDFGQWQRIDMSSGSQIYYISSANMDGTDDDCEKLGWKKLHEYNPAQRRWKYLSTLAA 180

Query: 181 GDVGDENNF-TFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNL 239
           G+   E+     ++  +EEDYYPSLPFAALFSCFKA+GLKVTCLLCYCSEGDN+ DAFNL
Sbjct: 181 GNAMQEDGLPXEDELEDEEDYYPSLPFAALFSCFKAKGLKVTCLLCYCSEGDNIPDAFNL 240

Query: 240 ADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           ADAACK L L+P N  GD G  W +PFSW TVYGPPPDMS+F
Sbjct: 241 ADAACKLLELSPQNFHGDQGGNWAIPFSWKTVYGPPPDMSLF 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428608|ref|XP_002284741.1| PREDICTED: proteasome assembly chaperone 2 [Vitis vinifera] gi|297741394|emb|CBI32525.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/282 (73%), Positives = 240/282 (85%), Gaps = 1/282 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGKHL+  CS L+LPALSIGNVGQLAVDLL+SST AE +GYLDD +VLPCVGND
Sbjct: 1   MEFIVEEGKHLNNDCSTLVLPALSIGNVGQLAVDLLISSTRAERIGYLDDPYVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P PRG++ALPL+AY+SS + LTL+QQRSPV+KGMMVE+AKNLA FAA SG KHV+VL
Sbjct: 61  AYGPIPRGEVALPLEAYDSSLNKLTLVQQRSPVLKGMMVEFAKNLAYFAADSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ QRIDMSSG QIYY+SS ++DG DD CE+LGWK+L EYNPAQR WKYLS+LA 
Sbjct: 121 SSLDFGQWQRIDMSSGSQIYYISSANMDGADDDCEKLGWKKLHEYNPAQRRWKYLSTLAA 180

Query: 181 GDVGDENNFTF-EDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNL 239
           G+   E+   F ++  +EEDYYPSLPFAAL SCFKA+GLKVTCLLCYCSEGDN+ DAFNL
Sbjct: 181 GNAMQEDGLAFEDELEDEEDYYPSLPFAALLSCFKAKGLKVTCLLCYCSEGDNIPDAFNL 240

Query: 240 ADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           ADAACK L L+P N  GD G  W +PFSW TVYGPPPDMS+F
Sbjct: 241 ADAACKLLELSPQNFHGDQGGNWAIPFSWKTVYGPPPDMSLF 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077776|ref|XP_002305403.1| predicted protein [Populus trichocarpa] gi|222848367|gb|EEE85914.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/281 (71%), Positives = 241/281 (85%), Gaps = 1/281 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGK L++  S LILPALSIGNVGQLAVDLLVSST AE +GYLDD ++LPCVGND
Sbjct: 1   MEFIIEEGKCLNKETSTLILPALSIGNVGQLAVDLLVSSTRAERIGYLDDPYILPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P+P G+LALPL+AY+S ++G+ L+QQRSPVVKGMMVE+A+NLADFA A+G  HV+VL
Sbjct: 61  AYGPTPCGELALPLEAYDSRNNGVALVQQRSPVVKGMMVEFARNLADFAVATGMNHVLVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+L+F RLQ+ID SSG QI+YLSST+ DGTDD CE+LGWK+ QEYNP QR WKYLSSLAE
Sbjct: 121 SSLEFMRLQKIDTSSGMQIFYLSSTNTDGTDDCCERLGWKKWQEYNPDQRSWKYLSSLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+   E+N  FED+ E+EDYYPSLPFAALFSCFKA+G+KVTCLLCYCSEGDN  +AF+LA
Sbjct: 181 GNARQEDNLPFEDEPEDEDYYPSLPFAALFSCFKAKGIKVTCLLCYCSEGDNTPEAFSLA 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           +A  K L L+ DN  G+ G KW++PFSW TVYGPPPD+SMF
Sbjct: 241 EATSKLLGLSIDNSHGEGG-KWLIPFSWRTVYGPPPDLSMF 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538845|ref|XP_003537911.1| PREDICTED: proteasome assembly chaperone 2-like [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/281 (71%), Positives = 236/281 (83%), Gaps = 1/281 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILPALSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPALSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH+VVL
Sbjct: 61  AYGPFPQGDLALPLEAYDSPSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIVVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS++ +GTD+ CEQLGWK+LQEY+P+Q  WKYLS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSSNSNGTDENCEQLGWKKLQEYDPSQMHWKYLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+V  E+  + ED+LEEE+YY SLPFAALFS  KA+GLKVTCLLCYCSEGDN++DAF L 
Sbjct: 181 GNVTVEDITSVEDELEEENYYASLPFAALFSFLKAKGLKVTCLLCYCSEGDNISDAFQLG 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           DA CK L+L+     G +G KW VP SWM+VYGPPPD+S+F
Sbjct: 241 DAVCKLLQLS-HPTTGIEGGKWRVPLSWMSVYGPPPDVSIF 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637497|gb|ACU19075.1| unknown [Glycine max]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/281 (70%), Positives = 234/281 (83%), Gaps = 1/281 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILP LSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPTLSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH+VVL
Sbjct: 61  AYGPFPQGDLALPLEAYDSPSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIVVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS++ +GTD+ CEQLGWK+LQEY+P+Q  WKYLS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSSNSNGTDENCEQLGWKKLQEYDPSQMHWKYLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+V  E+  + ED+LEEE+YY SLPFAALFS  KA+GLKV CLLCYCSEGDN++DAF L 
Sbjct: 181 GNVTVEDITSVEDELEEENYYASLPFAALFSFLKAKGLKVPCLLCYCSEGDNISDAFQLG 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           DA CK L+L+     G +G KW VP SWM+VYGPPPD+S+F
Sbjct: 241 DAVCKLLQLS-HPTTGIEGGKWRVPLSWMSVYGPPPDVSIF 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545347|ref|XP_003541105.1| PREDICTED: proteasome assembly chaperone 2-like isoform 1 [Glycine max]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/281 (70%), Positives = 235/281 (83%), Gaps = 1/281 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL E CS LILPALSIGNVGQL  DLL+SS G+E VGYLDD  VLPCVGND
Sbjct: 1   MEFVPEEGKHLHEDCSTLILPALSIGNVGQLVADLLISSMGSERVGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPVVKGMM+E+AKN+ADF A SG KH++VL
Sbjct: 61  AYGPFPQGDLALPLEAYDSLSNALTIIQQRSPVVKGMMIEFAKNMADFLAGSGKKHIIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QI+YLSS + +GTD+ CEQLGWK+LQEY+P+Q+ WK+LS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIHYLSSANSNGTDENCEQLGWKKLQEYDPSQKHWKHLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+V  E+  + ED+LEEE+YY SLPFAALFS  KA+GLKVTCLLCYCSEGDN++DAF L 
Sbjct: 181 GNVTLEDITSVEDELEEENYYASLPFAALFSFLKAKGLKVTCLLCYCSEGDNISDAFQLG 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           DA CK L+LN   + G +  KW VP SWMTVYGPP D+S+F
Sbjct: 241 DAVCKLLQLN-HPITGIESGKWRVPLSWMTVYGPPLDVSIF 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556175|ref|XP_002519122.1| conserved hypothetical protein [Ricinus communis] gi|223541785|gb|EEF43333.1| conserved hypothetical protein [Ricinus communis]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/281 (71%), Positives = 239/281 (85%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF++EEGK L + CS L+LPALSIGNVGQLAVDLLVSS  AE +GYLDD  VLPCVGND
Sbjct: 1   MEFIVEEGKQLHKECSTLVLPALSIGNVGQLAVDLLVSSQKAERIGYLDDPNVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P G+LAL L+AY+S ++ LTL+QQRSPVVKG MVE+A NLA+FAAASG KH ++L
Sbjct: 61  AYGPIPCGNLALSLEAYDSPANALTLVQQRSPVVKGKMVEFANNLAEFAAASGKKHAILL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S LDFGR QRIDMSSG Q YYLSST+ DGTDD CE+LGWKRLQEYNPAQR WKYLS+LAE
Sbjct: 121 SGLDFGRWQRIDMSSGLQTYYLSSTNSDGTDDDCERLGWKRLQEYNPAQRSWKYLSTLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+   E+   +ED+LEEEDYYPSLPFAAL+SCFKA+GLKVTCL CYCSEGDN++DAF+LA
Sbjct: 181 GNPMPEDRLPYEDELEEEDYYPSLPFAALYSCFKAKGLKVTCLFCYCSEGDNISDAFHLA 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           +AACK L ++  +  G++  KW++P+SW TVYGPPPDMS+F
Sbjct: 241 EAACKILGISAGHFHGEENVKWLIPYSWKTVYGPPPDMSIF 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490722|gb|AFK33427.1| unknown [Lotus japonicus]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/281 (70%), Positives = 235/281 (83%), Gaps = 1/281 (0%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGKHL+++CS LILPALSIGNVGQLA DLLVSS   E VGYLDD  VLPCVGND
Sbjct: 1   MEFVAEEGKHLNDNCSTLILPALSIGNVGQLAADLLVSSMATERVGYLDDPHVLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P+GDLALPL+AY+S S+ LT+IQQRSPV+KGMM+++AKN+ADF A SG KH+V+L
Sbjct: 61  AYGPVPQGDLALPLEAYDSPSNALTIIQQRSPVIKGMMLDFAKNMADFLAGSGKKHIVLL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFG+ Q++DMSSG QIYYLSS + +GTD+ CE LGWK+LQEY+P+Q+ WK+LS LAE
Sbjct: 121 SSLDFGKWQKVDMSSGLQIYYLSSANSNGTDENCESLGWKKLQEYDPSQKHWKFLSDLAE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
           G+   E+  + ED+LEEEDYY SLPFAAL+S  KA+GLKVTCLLCYCSEGDN++DAF LA
Sbjct: 181 GNATREDIISEEDELEEEDYYASLPFAALYSFLKAKGLKVTCLLCYCSEGDNISDAFQLA 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           DA CK LRL P    G +G KW VP  WMTVYGPPPDMSMF
Sbjct: 241 DAVCKLLRLTPP-TSGIEGNKWRVPLPWMTVYGPPPDMSMF 280

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834806|ref|XP_002885285.1| hypothetical protein ARALYDRAFT_479410 [Arabidopsis lyrata subsp. lyrata] gi|297331125|gb|EFH61544.1| hypothetical protein ARALYDRAFT_479410 [Arabidopsis lyrata subsp. lyrata]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/281 (67%), Positives = 227/281 (80%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEFV EEGK ++E CS L+LPALSIGNVGQLAVDLLVSSTG E VGYLDD ++LPCVGND
Sbjct: 1   MEFVAEEGKLVNEDCSTLVLPALSIGNVGQLAVDLLVSSTGTERVGYLDDPYLLPCVGND 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P GD+ALPL+ YESSS   TL QQRSPV KGMM+++A+N+ADFAA+SG KHV+VL
Sbjct: 61  AYGPLPCGDIALPLEVYESSSIATTLAQQRSPVAKGMMIKFAENIADFAASSGKKHVIVL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDF RL  +DMS GPQ+YYLS+   DG DD+CE+LG+ RL+EY+   R WKYLSS+ E
Sbjct: 121 SSLDFQRLHNLDMSRGPQVYYLSNAESDGRDDHCERLGFGRLREYDSEGRCWKYLSSVFE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
            +  +E  F  ED+LE+ DYYPSLPFAALFS +KARGLKVTCLLCYCSEGDN+ +AF LA
Sbjct: 181 KNSEEELTFPSEDELEDIDYYPSLPFAALFSAYKARGLKVTCLLCYCSEGDNIPEAFLLA 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           +AA K   L PD   G++G KW +P+SW ++YG PPDMSMF
Sbjct: 241 EAASKLTGLTPDKFHGEEGGKWRIPYSWKSMYGAPPDMSMF 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438454|ref|XP_004137003.1| PREDICTED: proteasome assembly chaperone 2-like [Cucumis sativus] gi|449519134|ref|XP_004166590.1| PREDICTED: proteasome assembly chaperone 2-like [Cucumis sativus]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 224/281 (79%), Gaps = 4/281 (1%)

Query: 1   MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
           MEF LEEGK L + CS L+LPALSIGNVGQLAVDLLVSS  A  +GYLDD  VLPC+GN+
Sbjct: 1   MEFFLEEGKQLHDQCSTLVLPALSIGNVGQLAVDLLVSSMRAARIGYLDDPCVLPCIGNN 60

Query: 61  AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
           AY P P G+LALPL+ YES+ + LTL+QQRSPV+KG MV++AKNLADF A  G KHVV+L
Sbjct: 61  AYEPLPIGELALPLEVYESTPNALTLVQQRSPVIKGKMVDFAKNLADFIATCGKKHVVLL 120

Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
           S+LDFGR Q+ID SSG QI+YLSST  DGTDDYCEQ+GW+RL EY+  Q  WKYLS+L E
Sbjct: 121 SSLDFGRWQQIDTSSGSQIHYLSSTKDDGTDDYCEQMGWRRLHEYDSEQSRWKYLSTLTE 180

Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
                E+   F+++LEE DY PSLPFA+LF+  KA+G+KVTCLLCYCSEGDN+ DAFNLA
Sbjct: 181 AKTTQEHGPPFDEELEEGDYLPSLPFASLFTFLKAKGVKVTCLLCYCSEGDNIPDAFNLA 240

Query: 241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
           +A  K L L P    GD+G KW+VP+SW +VYGPPPD+S+F
Sbjct: 241 EATGKLLGLRP----GDEGIKWVVPYSWKSVYGPPPDLSIF 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2085919	281	AT3G18940 "AT3G18940" [Arabido	1.0	1.0	0.658	2.7e-100
UNIPROTKB|E1BZ56	264	PSMG2 "Uncharacterized protein	0.569	0.606	0.307	3.5e-25
ZFIN|ZDB-GENE-040426-1972	260	psmg2 "proteasome (prosome, ma	0.516	0.557	0.324	5.6e-25
UNIPROTKB|Q2NL24	264	PSMG2 "Proteasome assembly cha	0.530	0.564	0.289	7.8e-22
UNIPROTKB|Q7SYV1	259	psmg2 "Proteasome assembly cha	0.537	0.583	0.287	1.5e-21
UNIPROTKB|Q969U7	264	PSMG2 "Proteasome assembly cha	0.523	0.556	0.281	1.4e-20
UNIPROTKB|Q5XGC5	261	psmg2 "Proteasome assembly cha	0.523	0.563	0.275	1.4e-19
CGD|CAL0006349	264	orf19.2278 [Candida albicans (	0.629	0.670	0.278	7e-19
UNIPROTKB|Q59Z84	264	CaO19.2278 "Putative uncharact	0.629	0.670	0.278	7e-19
UNIPROTKB|E2R7V2	264	PSMG2 "Uncharacterized protein	0.523	0.556	0.275	2.3e-18

TAIR|locus:2085919 AT3G18940 "AT3G18940" [Arabidopsis thaliana (taxid:3702)]

 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 185/281 (65%), Positives = 227/281 (80%)

Query:     1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
             MEFV+EEGK ++E CS L+LPALSIGNVGQLAVDLLVSSTGAE VGYLDD  +LPCVGND
Sbjct:     1 MEFVVEEGKLVNEDCSTLVLPALSIGNVGQLAVDLLVSSTGAERVGYLDDPNLLPCVGND 60

Query:    61 AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
             AY P P G++ALPL+ YESSS   TL QQRSPV KGMM+++A+N+A+FAA+SG KH++VL
Sbjct:    61 AYGPLPCGEIALPLEVYESSSIATTLAQQRSPVAKGMMIKFAENIANFAASSGKKHIIVL 120

Query:   121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
             S+LDF RL  +DMS GPQ+YYLS+   DG DD+CE+LG+ RL EY+   R WKYLSS+ E
Sbjct:   121 SSLDFQRLHNLDMSRGPQVYYLSNAESDGRDDHCERLGFGRLHEYDSEGRCWKYLSSVFE 180

Query:   181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240
              +  +E     ED+LE+ DYYPSLPFAALFS FKARGLK+TCLLCYCSEGDN+ +AF LA
Sbjct:   181 KNSVEELALPSEDELEDIDYYPSLPFAALFSAFKARGLKMTCLLCYCSEGDNIPEAFLLA 240

Query:   241 DAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
             +A+ K + L PD   G++G KW +P+SW ++YG PPDMSMF
Sbjct:   241 EASSKLMGLTPDKFHGEEGGKWQIPYSWKSMYGAPPDMSMF 281

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

UNIPROTKB|E1BZ56 PSMG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 51/166 (30%), Positives = 87/166 (52%)

Query:     3 FVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAY 62
             FV  +G  L      L++PA+S+GNVGQLAVDL++S+     VGY     ++P VGN+ Y
Sbjct:     2 FVPCDGGGLDFEGFTLLMPAVSVGNVGQLAVDLVISTLRMPKVGYFYTDCLVPMVGNNPY 61

Query:    63 RPSPRGDLALPLQA--YESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
               +    + L + A  Y   S  L ++Q RSP +K     + + L  +  +S    V++L
Sbjct:    62 ATTKENSMELSINAEVYSLPSKKLVVLQIRSPFIKNKYRPFCQTLLSWVESSKCARVILL 121

Query:   121 SALDFGRLQRIDMSS-GPQIYYLSSTSVD-GTDDYCEQLGWKRLQE 164
             S+      QR D    G  + YL + +++   + + ++L WK +++
Sbjct:   122 SSSH--AYQRDDEQLLGTPLRYLLTPALEKAVEGHIQELKWKEMEK 165

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

ZFIN|ZDB-GENE-040426-1972 psmg2 "proteasome (prosome, macropain) assembly chaperone 2" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 49/151 (32%), Positives = 81/151 (53%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPLQ 75
             LILPA+S+GNVGQLAVDLL+S+     VGY     ++P  GN+ Y  S      L+   +
Sbjct:    17 LILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS- 134
              Y      L ++Q R+P+++  +  + K +  +  +SG    V+LS+      QR D   
Sbjct:    77 VYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAH--AYQRDDQQL 134

Query:   135 SGPQIYYLSSTSVDGTD-DYCEQLGWKRLQE 164
              G  + Y+ S S++  +    E+LGW+ +++
Sbjct:   135 HGTPLRYMLSPSLEKEERQRFEELGWREMEK 165

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|Q2NL24 PSMG2 "Proteasome assembly chaperone 2" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
 Identities = 44/152 (28%), Positives = 78/152 (51%)

Query:    15 CSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLAL 72
             C+ L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++
Sbjct:    15 CT-LLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSI 73

Query:    73 PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRID 132
               + Y   S  L  +Q RS  +K     + + L  +   SG   VVVLS+        + 
Sbjct:    74 NAEVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQ 133

Query:   133 MSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
             + S P  Y L+ +      +  + L W+ +++
Sbjct:   134 LRSTPFRYLLTPSMQKSVQNKIQSLNWEEMEK 165

GO:0005634 "nucleus" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q7SYV1 psmg2 "Proteasome assembly chaperone 2" [Xenopus laevis (taxid:8355)]

 Score = 179 (68.1 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 44/153 (28%), Positives = 72/153 (47%)

Query:    14 SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLA 71
             S S L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VGN+ Y  +     +L 
Sbjct:    13 SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELC 72

Query:    72 LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRI 131
                + Y   S  L ++Q RS V+K     + + L  +        V+ LS+         
Sbjct:    73 TNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDK 132

Query:   132 DMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              +   P  Y ++        D   +L WK +++
Sbjct:   133 QLFGTPFRYLVTPALQKSVADVLSELEWKEMEK 165

GO:0005634 "nucleus" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

UNIPROTKB|Q969U7 PSMG2 "Proteasome assembly chaperone 2" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 42/149 (28%), Positives = 78/149 (52%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQ 75
             L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L++  +
Sbjct:    17 LLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSS 135
              Y   S  L  +Q RS  +K     + + L  +  +SG   V+VLS+    +   + + S
Sbjct:    77 VYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRS 136

Query:   136 GPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              P  Y L+ +      +  + L W+ +++
Sbjct:   137 TPFRYLLTPSMQKSVQNKIKSLNWEEMEK 165

GO:0006915 "apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|Q5XGC5 psmg2 "Proteasome assembly chaperone 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 169 (64.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 41/149 (27%), Positives = 71/149 (47%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQ 75
             L+LPA+S+GNVGQLA+DL++S+     VGY     ++P VG++ Y        +L    +
Sbjct:    17 LLLPAISVGNVGQLAIDLIISTLKIPKVGYFYTDCLVPMVGSNPYETDEENAKELCTNAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSS 135
              Y   S  L ++Q RS V+K     + + L  +        V++LS+          +  
Sbjct:    77 VYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVILLSSCHAYHRDDTQLFG 136

Query:   136 GPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              P  Y ++        D  ++L WK +++
Sbjct:   137 TPFRYLVTPALQKSVADVLKELEWKEMEK 165

GO:0005634 "nucleus" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

CGD|CAL0006349 orf19.2278 [Candida albicans (taxid:5476)]

 Score = 182 (69.1 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
 Identities = 52/187 (27%), Positives = 92/187 (49%)

Query:    16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQ 75
             S LI+P++SIGNV QLA+DLL+ +   E V  LDD ++ P      Y   P+  ++   +
Sbjct:    20 STLIIPSVSIGNVPQLAIDLLIHTHNLEKVDSLDDLYLYPFASPVDYVTEPKKGISHAAE 79

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLA-DFAAASGNKHVVVLSALDFGRLQRIDMS 134
              + +    LTLIQQRSP++      Y  N+   F  +     +++L + D G ++ I  S
Sbjct:    80 VFHNKDLNLTLIQQRSPILPYNTKLYVTNIIIPFITSHEFDRILILDSSDAGLVEHIS-S 138

Query:   135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQ---RGWKYLSSLAEG-DVGDENNFT 190
              G ++Y    T  D   +  E +   + +    A    R  KY+  L E  ++  ++N +
Sbjct:   139 GGIELY----TKEDLLSESLESMKLSKEESTTAAHEDNRNSKYVRCLLENFNLSTDSNES 194

Query:   191 FEDDLEE 197
               ++ ++
Sbjct:   195 HSNEFKD 201

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0043248 "proteasome assembly" evidence=IEA

UNIPROTKB|Q59Z84 CaO19.2278 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 182 (69.1 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
 Identities = 52/187 (27%), Positives = 92/187 (49%)

Query:    16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQ 75
             S LI+P++SIGNV QLA+DLL+ +   E V  LDD ++ P      Y   P+  ++   +
Sbjct:    20 STLIIPSVSIGNVPQLAIDLLIHTHNLEKVDSLDDLYLYPFASPVDYVTEPKKGISHAAE 79

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLA-DFAAASGNKHVVVLSALDFGRLQRIDMS 134
              + +    LTLIQQRSP++      Y  N+   F  +     +++L + D G ++ I  S
Sbjct:    80 VFHNKDLNLTLIQQRSPILPYNTKLYVTNIIIPFITSHEFDRILILDSSDAGLVEHIS-S 138

Query:   135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQ---RGWKYLSSLAEG-DVGDENNFT 190
              G ++Y    T  D   +  E +   + +    A    R  KY+  L E  ++  ++N +
Sbjct:   139 GGIELY----TKEDLLSESLESMKLSKEESTTAAHEDNRNSKYVRCLLENFNLSTDSNES 194

Query:   191 FEDDLEE 197
               ++ ++
Sbjct:   195 HSNEFKD 201

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E2R7V2 PSMG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 41/149 (27%), Positives = 74/149 (49%)

Query:    18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQ 75
             L++PA+S+GNVGQLA+DL++S+     +GY     ++P VGN+ Y  +     +L +  +
Sbjct:    17 LLMPAVSVGNVGQLAIDLIISTLNMRKIGYFYTDCLVPMVGNNPYATAEENSTELCINAE 76

Query:    76 AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSS 135
              Y   S  L  +Q RS  +K     + + L  +  +S    V+VLS+        + + S
Sbjct:    77 VYSLPSKKLVALQLRSIFIKYKSKPFCEKLLSWVKSSNCAKVIVLSSSHSYHRNDLQLRS 136

Query:   136 GPQIYYLSSTSVDGTDDYCEQLGWKRLQE 164
              P  Y L+        +  + L W+ +++
Sbjct:   137 TPFRYLLTPIVQKSVQNRIQSLNWEEMEK 165

GO:0043248 "proteasome assembly" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IV0352 hypothetical protein (281 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
pfam09754	220	pfam09754, PAC2, PAC2 family	6e-27
COG1938	244	COG1938, COG1938, Archaeal enzymes of ATP-grasp su	6e-06

>gnl|CDD|220382 pfam09754, PAC2, PAC2 family

 Score =  103 bits (260), Expect = 6e-27
 Identities = 62/233 (26%), Positives = 88/233 (37%), Gaps = 18/233 (7%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGD--LALPLQ 75
           LI      GNVGQLAVD L+ S  AE VG +D   + P  G         G   L  PL+
Sbjct: 1   LIEGFPDAGNVGQLAVDHLIESLDAEKVGEIDSDELFPYRGRRPQVTVDEGGKILWPPLE 60

Query: 76  AYESSSSG-LTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
            Y     G L ++Q RSP   G   E+A+ + D+A   G   V+ L  L  G        
Sbjct: 61  LYYLKDGGDLLVLQGRSPEPPGRWYEFAEAILDWAEELGVSEVITLGGLPAGVPHTR--- 117

Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
             P +   ++       D  ++ G +  +   P       +S L  G+            
Sbjct: 118 --PPVTGAATDP--ELIDELKEEGPELSEYGGPVG-----ISGLLLGEAEQRGIPAVSLL 168

Query: 195 LEEEDYYPSLPFAA--LFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACK 245
            E   Y P    A   L +  K  GL+V  L     E DN+ +   L +   +
Sbjct: 169 AEVPHYLPDPKAALALLEALSKLLGLEVP-LDELEEEADNIEEIEELVEKLEE 220

This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits. Length = 220

>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily [General function prediction only]

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 12/121 (9%)

Query: 25  IGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGL 84
           IG VG +A   L+     E +GY++ + + P       R  P      P + Y  SS G+
Sbjct: 26  IGLVGVIAGKHLIEELNMEEIGYIESKHIPPVAVVVEGRALP------PFRIYA-SSDGV 78

Query: 85  TLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSS 144
             +    P+   ++ E +  + ++A  +G + V+ L  +             P +Y +++
Sbjct: 79  LALVSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPAR-----LREEKPSVYGVAT 133

Query: 145 T 145
           +
Sbjct: 134 S 134

Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG3112	262	consensus Uncharacterized conserved protein [Funct	100.0
COG1938	244	Archaeal enzymes of ATP-grasp superfamily [General	100.0
PF09754	219	PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (	99.97
TIGR00161	238	conserved hypothetical protein TIGR00161. This ort	99.97
COG2047	258	Uncharacterized protein (ATP-grasp superfamily) [G	99.59
TIGR00162	188	conserved hypothetical protein TIGR00162. This ort	99.12

>KOG3112 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.3e-61  Score=416.52  Aligned_cols=261  Identities=30%  Similarity=0.459  Sum_probs=237.1

Q ss_pred             CceeeccCCccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeC
Q 023526            1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESS   80 (281)
Q Consensus         1 m~f~p~~~~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~   80 (281)
                      |+|+...++.+|...+|+|+|+.++|||||||+||||.+.+|+||||+++++|.|+||+++|.+.+.+.++.++|||.+.
T Consensus         1 m~f~~~~~~~~~~~~~t~i~p~~~vgn~~qla~dlli~s~~~~rIGy~~~p~LiP~vGn~aY~~~p~~E~~~~~EvYe~~   80 (262)
T KOG3112|consen    1 MLFLKDKRTTLDVAEHTVIIPSICVGNAAQLACDLLIASKELRRIGYITHPALIPVVGNSAYQHEPKEEKVSSCEVYEGT   80 (262)
T ss_pred             CceecccCeeeccccceeEecceeeCcHHHHHHHHhhccccchhcccccCCceeeeecCCcCCCCCCcceeeceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999988788899999999999


Q ss_pred             CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcc
Q 023526           81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWK  160 (281)
Q Consensus        81 ~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~  160 (281)
                      +.+++++|+|+|.+++....|+++|++|++++|.++||+|||++...|.+.+++.+|.+|+++++.++..+..+++|||.
T Consensus        81 s~kl~~~Q~RSp~vk~~~~~F~e~l~~~~kSSG~~~VIVLSss~~~~~~~L~~srgP~~Y~lsnae~~~~~~h~~~Lg~e  160 (262)
T KOG3112|consen   81 SDKLLVVQFRSPWVKRHTAHFQEELVELLKSSGARRVIVLSSSFGFEKRVLEESRGPWAYRLSNAEENFKEAHAAQLGNE  160 (262)
T ss_pred             chhhHHHHhhhHHHHhhhhHHHHHHHHHHHhcCCceEEEEecchHHHhhhhhhccCCeeEEcCchhhhhHHHHHHHhCch
Confidence            99999999999999999999999999999999999999999999999999999999999999988888888999999998


Q ss_pred             cccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHH
Q 023526          161 RLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA  240 (281)
Q Consensus       161 ~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA  240 (281)
                      ++.++    .-||++.+-..                +-....++|+..||++++++++++.||++||+||||+|||..++
T Consensus       161 E~deg----Rcwke~~~Sve----------------e~aipggg~~~~Lf~af~~~~v~m~~Ll~y~sEGDNipdA~lLv  220 (262)
T KOG3112|consen  161 ELDEG----RCWKEHKGSVE----------------EDAIPGGGNALQLFKAFDEQKVPMMLLLRYLSEGDNIPDASLLV  220 (262)
T ss_pred             hhhhc----cchhhhCCcce----------------eeecCCCccHHHHHHHHHhcCCchhhHHHHhhcCCCCchHHHHH
Confidence            87643    46888752211                11123366778899999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCCCCC-CCCCcccCCccccccCCCCCCCCC
Q 023526          241 DAACKFLRLNPDNVRGD-DGEKWIVPFSWMTVYGPPPDMSMF  281 (281)
Q Consensus       241 ~~l~~~L~~~~~~~~~~-~~~~w~~P~SW~~lyG~~~~~~ly  281 (281)
                      +++|+|+++.++..++. ...+|++|.||+.+||++++..||
T Consensus       221 e~lnel~~~~~~l~~g~~~~~kw~IP~SW~llfG~~~~~~lF  262 (262)
T KOG3112|consen  221 EELNELCEDFLQLRNGGDGSFKWTIPKSWNLLFGNDVTELLF  262 (262)
T ss_pred             HHHHHHHHhhhhhccCCCCcceEeccchHHHhcCCCCCcccC
Confidence            99999999977654332 456899999999999999999998

>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=239.67  Aligned_cols=192  Identities=22%  Similarity=0.321  Sum_probs=169.1

Q ss_pred             CccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 023526            9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ   88 (281)
Q Consensus         9 ~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vlq   88 (281)
                      ...+.++++||.+||++|+||.||++|||.+|+|+.||+++++++||++   .+   .+|.+.+|+|+|++ ++++++++
T Consensus        10 ~~~~~e~~ilI~g~PgiGlVG~Ia~~~li~~l~m~~iG~i~s~~~PPv~---vv---~~G~~~~P~RIY~~-~~~~~~~~   82 (244)
T COG1938          10 EKVDYENPILIEGFPGIGLVGVIAGKHLIEELNMEEIGYIESKHIPPVA---VV---VEGRALPPFRIYAS-SDGVLALV   82 (244)
T ss_pred             ccccccCCEEEEeCCCCchhhHHHHHHHHHHcCCeEEEEEEecCCCCEE---EE---eCCcccCceeEEec-CCCEEEEE
Confidence            3456789999999999999999999999999999999999999999998   44   36799999999999 89999999


Q ss_pred             EccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCcc
Q 023526           89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPA  168 (281)
Q Consensus        89 ~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~  168 (281)
                      ++.||++...++|+++|++|+.++|+++||+++|+++..+++     .+.+|+++++  ....+.+++++.+.++.    
T Consensus        83 ~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~~--~~~~~~l~~~~~~~~~~----  151 (244)
T COG1938          83 SDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVATS--EEKLEKLKDLGAEPLEE----  151 (244)
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEecc--hhhhhHHhhcCCCcccc----
Confidence            999999999999999999999999999999999998877655     5789999986  44456677776555432    


Q ss_pred             ccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHH
Q 023526          169 QRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACK  245 (281)
Q Consensus       169 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~  245 (281)
                                                     +.+++|.|.|+.+|..++++..+|+.++.  -.+||+.++|..   +|+
T Consensus       152 -------------------------------G~I~G~~g~ll~e~~~r~i~a~~ll~et~--~~~PDP~AAa~vve~lnk  198 (244)
T COG1938         152 -------------------------------GTIVGPSGALLNECLKRGIPALVLLAETF--GDRPDPRAAARVVEALNK  198 (244)
T ss_pred             -------------------------------ceeecccHHHHHHHHHcCCCeEEEecccc--CCCCChHHHHHHHHHHHH
Confidence                                           23578899999999999999999999999  999999998885   788


Q ss_pred             HhccCC
Q 023526          246 FLRLNP  251 (281)
Q Consensus       246 ~L~~~~  251 (281)
                      ++++.-
T Consensus       199 ~~~l~V  204 (244)
T COG1938         199 MLGLNV  204 (244)
T ss_pred             HhcCcc
Confidence            888864

>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes

Probab=99.97  E-value=1.5e-30  Score=230.51  Aligned_cols=189  Identities=33%  Similarity=0.460  Sum_probs=140.0

Q ss_pred             EEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCC--CcceeeEeeeeCCCcEEEEEEccCCCc
Q 023526           18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQAYESSSSGLTLIQQRSPVVK   95 (281)
Q Consensus        18 LI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~--~l~tp~evY~~~~~~i~vlq~rspi~~   95 (281)
                      ||+|++|+|||||||+||||++|++++||++|++.+.|++|++++....+|  .+.+|+|+|++++++++++|+|+|+++
T Consensus         1 li~g~~~~G~Vg~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~~~i~vl~~~~p~~~   80 (219)
T PF09754_consen    1 LIEGFPGIGNVGQLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSEDSKILVLQGRSPIPP   80 (219)
T ss_dssp             EEESSTBGGGHHHHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEECTTEEEEEESSE--S
T ss_pred             CcCCccchhhHHHHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECCCCEEEEEecCCCCc
Confidence            799999999999999999999999999999999888888888776443345  899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCccccchhhh
Q 023526           96 GMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYL  175 (281)
Q Consensus        96 ~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~  175 (281)
                      ...++|+++|++|+++.|+++||+|+|+++..+.+     .|.+|+.+++  ++..+.++..+....             
T Consensus        81 ~~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~-------------  140 (219)
T PF09754_consen   81 GRWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPHE-----RPPVYRVATS--EELLDKLEEAGIELS-------------  140 (219)
T ss_dssp             CGHHHHHHHHHHHHHHTTECEEEEEEEEEESS-TT-----S-EEEEEESS--GGGHCHSHHTT-EE--------------
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCcc-----ccceEEEEcC--HHHhhhhcccccccc-------------
Confidence            99999999999999999999999999999998763     3467777765  222233332111110             


Q ss_pred             hhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHHHhccC
Q 023526          176 SSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACKFLRLN  250 (281)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~~L~~~  250 (281)
                                            ..+.+.++.+.|+..+.+++++.++|+.++.  ..++|+.+++..   |++.+++.
T Consensus       141 ----------------------~~~~~~g~~~~l~~~~~~~~i~~~~l~~~~~--~~~~d~~aA~~ll~~l~~~~~~~  194 (219)
T PF09754_consen  141 ----------------------EEGIIVGPSGLLLNEAEERGIPAICLLAETP--GYLPDPRAAARLLEALSKLLGLK  194 (219)
T ss_dssp             ----------------------SEEEE-HHHHHHHHHHHHTT-EEEEEEEEEE--GGGT-HHHHHHHHHHHHHHHT--
T ss_pred             ----------------------cCCCccCchHHHHHHHHhCCCCceEEEeecC--CccCCHHHHHHHHHHHHHhhCce
Confidence                                  1112344456688888999999999999999  888888886654   45555553

Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.

>TIGR00161 conserved hypothetical protein TIGR00161

Probab=99.97  E-value=4.2e-29  Score=225.29  Aligned_cols=189  Identities=14%  Similarity=0.182  Sum_probs=154.9

Q ss_pred             CccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 023526            9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ   88 (281)
Q Consensus         9 ~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vlq   88 (281)
                      +..++++++||.||+|+|+||+||+||||++|++++||+|+++++||++..      .+|...+|+|+|.+++. ++++|
T Consensus        10 ~~~~~~~~ilI~gfpg~G~VG~iA~~~Li~~l~~~~ig~I~s~~~pP~v~v------~~g~~~~p~riY~~~~~-~vv~~   82 (238)
T TIGR00161        10 YKEDVENPIVIEGFPGVGLVGNIAGWLLIEDLKLREIGYIDSKYFPPLAVL------YKGVAIPPVRIYEGKDG-IVLFL   82 (238)
T ss_pred             cCccCCCCEEEEeCCCCChHHHHHHHHHHHHcCCeEEEEEecCCCCCeEEe------cCCeecCceEEEecCCc-EEEEE
Confidence            346899999999999999999999999999999999999999999999954      25689999999997533 68999


Q ss_pred             EccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCcc
Q 023526           89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPA  168 (281)
Q Consensus        89 ~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~  168 (281)
                      +|.|+.+...++|+++|++|+++.|+++||+|+|+.+..+       .+++|+++++  ++..+.++.. ...+      
T Consensus        83 ~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~-------~~~v~~~at~--~~~~~~l~~~-~~~~------  146 (238)
T TIGR00161        83 SDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREK-------SQPVFGAANS--QELIERLKDL-IEIF------  146 (238)
T ss_pred             ecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCC-------CCcEEEEECC--HHHHHHHHHh-cCcC------
Confidence            9999999999999999999999999999999999998642       3678988875  3233333321 1111      


Q ss_pred             ccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHH
Q 023526          169 QRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACK  245 (281)
Q Consensus       169 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~  245 (281)
                                                   ..+.+.++.+.|+..|..++++.+||+.++.  ...||+.+++..   |++
T Consensus       147 -----------------------------~~g~i~G~~g~ll~~a~~~gi~~i~Ll~et~--~~~PDP~AA~~ll~~l~~  195 (238)
T TIGR00161       147 -----------------------------PFGNLNGISGTLLTRCAVNDIPAICLLAETL--GPYPDPRAAASLVEVLNK  195 (238)
T ss_pred             -----------------------------CCCEEechhHHHHHHHHHcCCCEEEEEEeCC--CCCCCHHHHHHHHHHHHH
Confidence                                         1123456677799999999999999999997  678999998775   677


Q ss_pred             HhccCC
Q 023526          246 FLRLNP  251 (281)
Q Consensus       246 ~L~~~~  251 (281)
                      ++++.-
T Consensus       196 l~~~~i  201 (238)
T TIGR00161       196 MLNTNV  201 (238)
T ss_pred             HhCCCc
Confidence            887754

This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.

>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]

Probab=99.59  E-value=2.4e-14  Score=125.94  Aligned_cols=193  Identities=19%  Similarity=0.238  Sum_probs=137.5

Q ss_pred             ccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcc-eeeEeeeeCC----CcE
Q 023526           10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLA-LPLQAYESSS----SGL   84 (281)
Q Consensus        10 ~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~-tp~evY~~~~----~~i   84 (281)
                      .++++++.||.|.|++|+||.||+||||+.|+++++-.+.|+||||-|...+     ++.+. ..-|+|+-++    +++
T Consensus        12 ep~l~~PvlieGLPGIG~VGKLaAehlv~el~aeK~~el~S~yfPPQV~V~d-----D~~vel~~ne~Y~~k~~~~~~Dl   86 (258)
T COG2047          12 EPELENPVLIEGLPGIGHVGKLAAEHLVEELKAEKFAELFSPYFPPQVLVND-----DSTVELMRNEFYYWKSPGGERDL   86 (258)
T ss_pred             ccccCCceeecCCCCcchHHHHHHHHHHHHhCceeehhhhccCCCCeeEecC-----CceEEeeeceeEEEecCCCCCcE
Confidence            4689999999999999999999999999999999999999999999774433     22322 3457887643    578


Q ss_pred             EEEEEccC-CCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCccccc
Q 023526           85 TLIQQRSP-VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ  163 (281)
Q Consensus        85 ~vlq~rsp-i~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e  163 (281)
                      +++--+.- .-+...++.+..+++++++.|.+.|..|+|.....--     ..|+|+.+.++  ..+-+.+++-|+.. +
T Consensus        87 iil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~-----eep~VlGA~ts--~eLi~~lke~gV~f-r  158 (258)
T COG2047          87 IILVGDTQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLV-----EEPRVLGAVTS--KELIEELKEHGVEF-R  158 (258)
T ss_pred             EEEeccccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCccc-----CCceeEEecCC--HHHHHHHHHcCeEe-c
Confidence            88876663 3445578899999999999999999999999877532     25888888765  44445555544311 1


Q ss_pred             ccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCC-hHHH-HHHHHhcCCceEEEEEEeccCCCHHHHHHHHH
Q 023526          164 EYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLP-FAAL-FSCFKARGLKVTCLLCYCSEGDNMADAFNLAD  241 (281)
Q Consensus       164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP-~~~L-~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~  241 (281)
                      +..|                               .+  .+- .++| +--..-++++.+||.-.++  .-.-||.++-.
T Consensus       159 ~~ep-------------------------------gG--gIVGasGLllg~g~l~gm~gaCLMGeT~--GY~vDpkaAka  203 (258)
T COG2047         159 SGEP-------------------------------GG--GIVGASGLLLGFGELRGMDGACLMGETP--GYLVDPKAAKA  203 (258)
T ss_pred             cCCC-------------------------------CC--ceechhhhhhhhhhhcCCCceeeccCCC--ccccChHHHHH
Confidence            1100                               00  111 2344 3334558999999999988  77888887444


Q ss_pred             H---HHHHhccC
Q 023526          242 A---ACKFLRLN  250 (281)
Q Consensus       242 ~---l~~~L~~~  250 (281)
                      .   |.+.|++.
T Consensus       204 VL~vl~k~lgiE  215 (258)
T COG2047         204 VLEVLCKMLGIE  215 (258)
T ss_pred             HHHHHHHHhCce
Confidence            3   55666664

>TIGR00162 conserved hypothetical protein TIGR00162

Probab=99.12  E-value=1.3e-09  Score=95.24  Aligned_cols=128  Identities=18%  Similarity=0.219  Sum_probs=95.9

Q ss_pred             CCcEEEEEEcc-CCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCc
Q 023526           81 SSGLTLIQQRS-PVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGW  159 (281)
Q Consensus        81 ~~~i~vlq~rs-pi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~  159 (281)
                      +++++++.... |+.+...++|++++++|+++.|+++||.|+|+.+..+.+     .|.+|+.+++  ++..+.++..+.
T Consensus        14 ~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~t-----rp~V~~~at~--~el~~~l~~~g~   86 (188)
T TIGR00162        14 GTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVE-----EPYVYGAATS--PELVEELKEHGV   86 (188)
T ss_pred             CCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCC-----CCceEEEeCC--HHHHHHHHhcCC
Confidence            36899999999 777787889999999999999999999999998865432     3668988875  333333333221


Q ss_pred             ccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHH
Q 023526          160 KRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNL  239 (281)
Q Consensus       160 ~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~l  239 (281)
                      ...                                  ...+.+.++.+.|+.+|.+++++.+||+..|.  ...+|+.+.
T Consensus        87 ~~~----------------------------------~~~g~i~G~~glLl~~a~~~gi~ai~L~~e~p--~y~pDP~AA  130 (188)
T TIGR00162        87 KFR----------------------------------EPGGGIIGASGLLLGVSELEGIPGACLMGETP--GYMIDPKAA  130 (188)
T ss_pred             eee----------------------------------cCCCccccHHHHHHHHHHHCCCCeEEEEEeCC--CCCCChHHH
Confidence            110                                  01123456677789999999999999999999  788999987


Q ss_pred             HHH---HHHHhccCC
Q 023526          240 ADA---ACKFLRLNP  251 (281)
Q Consensus       240 A~~---l~~~L~~~~  251 (281)
                      +..   |++++++.-
T Consensus       131 ~alL~~L~kllgl~v  145 (188)
T TIGR00162       131 KAVLEVLCKMLSLEV  145 (188)
T ss_pred             HHHHHHHHHHHCCCC
Confidence            775   677887754

This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
4g4s_P	269	Structure Of Proteasome-Pba1-Pba2 Complex Length =		5e-05

>pdb|4G4S|P Chain P, Structure Of Proteasome-Pba1-Pba2 Complex Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 41/276 (14%)
Query: 16  SNLILPALSIGNVGQLAVDLLVSSTGA--ETVGYLDDQFVLPCV--------GNDAYRPS 65
           S L+LP +S+GN+ QL++D L++S     E +  LD ++++  V        G+D+    
Sbjct: 4   SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKD 63
Query: 66  PRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKN-----LADFAAASGNKHVVVL 120
                +  L+ + +   GL  IQQR+P+V    V Y  N     +  F +      + + 
Sbjct: 64  ADMKYSSALEVFYNKKRGLFAIQQRTPLVS---VNYLNNFIVEIILPFLSKYNISEICIW 120
Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
            +L     +   +    ++Y L        DD  E L    L +       W + +    
Sbjct: 121 DSLYAMEDENGVIVRPQEVYSLGEFYF---DDEAELLSNLHLNDQESMVNNWLHFTPT-- 175
Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLK-VTCLLCYCSEGDNMADA--F 237
                    +F+D +  +     + F  L +  + + L+ +    C  +EGDN  D+  F
Sbjct: 176 ---------SFQDKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDSQQF 226
Query: 238 NLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYG 273
                + K ++  P  V      K++ P SW   YG
Sbjct: 227 LQWIISQKVIKNAPPIV------KFVRPISWQGAYG 256
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3gaa_A	252	Uncharacterized protein TA1441; the protein with u	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} Length = 252

 Score = 60.6 bits (146), Expect = 4e-11
 Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 52/237 (21%)

Query: 18  LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAY 77
           ++         G LA   +V + G   V +L  Q + P       +         P + Y
Sbjct: 29  VLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFVGGKLRH------PFRIY 82

Query: 78  ESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGP 137
            ++S+ + +     P+    + E +  L ++    G   +V++            +    
Sbjct: 83  ANNSNTVLVAMCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANG-----IPEER 137

Query: 138 QIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEE 197
            ++ ++                 + ++                                 
Sbjct: 138 PVFAVAEKP-----------KLDKFKKAGIQ---------------------------PA 159

Query: 198 EDYYPSLPFAALFSCFKARGLKVTCLLCYCSEG--DNMADAFNLADAACKFLRLNPD 252
           +    +     + +    R +     +   S    D  A   ++ +A  K   L   
Sbjct: 160 DSAIIAGMGGGILNECLVRKITGLSFITPTSVDIPDPGA-VLSIIEAINKAYNLKIK 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 63/219 (28%)

Query: 39  STGAETVGYLDDQFVLPCVGNDAYRPS--PRGDLALPLQAYESSSSGLTLIQQRSP---V 93
                T  Y++ +  L    N  +      R    L L+          L++ R     +
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQ--------ALLELRPAKNVL 154

Query: 94  VKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDY 153
           + G+              SG K  V L      ++Q   M     I++L+  + +  +  
Sbjct: 155 IDGV------------LGSG-KTWVALDVCLSYKVQCK-MDFK--IFWLNLKNCNSPETV 198

Query: 154 CEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCF 213
            E L  K L + +P        +S ++     +        ++ E          L    
Sbjct: 199 LEML-QKLLYQIDPN------WTSRSDHSSNIKLRI---HSIQAE----------LRRLL 238

Query: 214 KARGLKVTCLLCYCSEGDN-----MADAFNLADAACKFL 247
           K++  +  CLL       N       +AFNL   +CK L
Sbjct: 239 KSKPYE-NCLLVL----LNVQNAKAWNAFNL---SCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
4g4s_P	269	Proteasome assembly chaperone 2; alpha beta, NTN-h	100.0
3gaa_A	252	Uncharacterized protein TA1441; the protein with u	99.95
2p90_A	319	Hypothetical protein CGL1923; structural genomics,	99.81
3mnf_A	250	PAC2 family protein; PSI2, MCSG, structural genomi	99.76
2wam_A	351	RV2714, conserved hypothetical alanine and leucine	99.63
3e35_A	325	Uncharacterized protein SCO1997; alpha/beta/alpha	99.62

>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-59  Score=426.54  Aligned_cols=244  Identities=20%  Similarity=0.305  Sum_probs=153.0

Q ss_pred             CCEEEEcccCccchHHHHHHHHHhcc--CCcEEEEEecCCcccccccCCCCCC--------CCCCcceeeEeeeeCCCcE
Q 023526           15 CSNLILPALSIGNVGQLAVDLLVSST--GAETVGYLDDQFVLPCVGNDAYRPS--------PRGDLALPLQAYESSSSGL   84 (281)
Q Consensus        15 ~~tLI~p~~s~GnVgqLA~DlLI~sl--~~~~vG~l~s~~l~P~vg~~~~~~~--------~~~~l~tp~evY~~~~~~i   84 (281)
                      ++|||+|+||+|||||||+|||||||  +++|||+||+++++||||+++|..+        +++.++|++|||+++++++
T Consensus         3 ~stLIlP~VSvGNVgQLavDLLI~tl~~~~~kVG~l~~~~l~P~vGp~~~~~~~~~~~~~~~~~~lsta~EvY~~~~~~l   82 (269)
T 4g4s_P            3 MSCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKDADMKYSSALEVFYNKKRGL   82 (269)
T ss_dssp             CCEEEEECCCGGGHHHHHHHHHHHHTCSSEEEEEECCCTTBCCCEECCCCBSSSCCCSCCCTTCCCEESEEEEEETTTTE
T ss_pred             ceEEEEeccccccHHHHHHHHHHhcCcccceEEEEecCCcccceeCCcccccccccccccCCccceeeeEEEEEcCCCCE
Confidence            58999999999999999999999999  7899999999999999999988532        3578999999999999999


Q ss_pred             EEEEEccCCCc-hhHHH-HHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccc
Q 023526           85 TLIQQRSPVVK-GMMVE-YAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL  162 (281)
Q Consensus        85 ~vlq~rspi~~-~~~~~-f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~  162 (281)
                      +||||||||++ ++.++ |++.|++|++++||++||+|+|+++.+|+|.++.+++.+|.++....+...+.++.++|.++
T Consensus        83 ~viQqRSPii~~~~~~~~f~e~L~~~i~~~~f~~VivLsS~~a~~r~d~~~~~~~~~y~~~~~~~~~~~~~l~~l~l~~~  162 (269)
T 4g4s_P           83 FAIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLYAMEDENGVIVRPQEVYSLGEFYFDDEAELLSNLHLNDQ  162 (269)
T ss_dssp             EEEEECSCBSCGGGHHHHHHHHHHHHHHGGGCSEEEEECCBCCC------------------------------------
T ss_pred             EEEEEeccccccchhhHHHHHHHHHHHHHcCCCEEEEEecCccccccchhccCCceEEeccccccchhHHHhcccccccc
Confidence            99999999997 44554 55559999999999999999999999999988888887787766544445556666666655


Q ss_pred             cccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHH----HHHHHh-c-CCceEEEEEEeccCCCHHHH
Q 023526          163 QEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAAL----FSCFKA-R-GLKVTCLLCYCSEGDNMADA  236 (281)
Q Consensus       163 e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L----~~~~~~-~-~i~~~~L~~f~~EGDN~~DA  236 (281)
                      +..   +..|......           ...     .......|++++    +.++++ + .++++||++||+||||++||
T Consensus       163 ~~~---~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~L~~fcsEGDN~~DA  223 (269)
T 4g4s_P          163 ESM---VNNWLHFTPT-----------SFQ-----DKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDS  223 (269)
T ss_dssp             ---------------------------------------CCHHHHHHTTC------------CEECCCCBCCCSCCTTHH
T ss_pred             ccc---cccccccCcc-----------ccc-----cccccCCchhHHHHHHHhhccccccccceEEEEEEeecCCCHHHH
Confidence            432   2222222110           001     111234455553    333332 2 36899999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCcccCCccccccCCCCCCCCC
Q 023526          237 FNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF  281 (281)
Q Consensus       237 ~~lA~~l~~~L~~~~~~~~~~~~~~w~~P~SW~~lyG~~~~~~ly  281 (281)
                      +.||++|++++++...    ....+|++|+||++|||+++++++|
T Consensus       224 ~~la~~l~~~l~~~~~----~~~~~w~~P~SW~~lfG~~~~~~~f  264 (269)
T 4g4s_P          224 QQFLQWIISQKVIKNA----PPIVKFVRPISWQGAYGMADARDKF  264 (269)
T ss_dssp             HHHHHHHSCC-------------CCCCCBGGGGGTTCSSCHHHHH
T ss_pred             HHHHHHHHHHHcccCC----CCcCCccCCCccccccCCCCCchHH
Confidence            9999999999988642    1245799999999999999987765

>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}

Probab=99.95  E-value=1e-27  Score=216.68  Aligned_cols=193  Identities=14%  Similarity=0.153  Sum_probs=155.9

Q ss_pred             CCccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEE
Q 023526            8 GKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLI   87 (281)
Q Consensus         8 ~~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vl   87 (281)
                      ...+++++++||.||+|+||||+||+||||++|++++||+||++++||++...      +|.+.+|+|+|.++++++++|
T Consensus        19 ~~~~~l~~pvlI~gf~gaG~vg~lA~~hLi~~l~~~~vg~id~~~lPp~v~~~------dg~~~~P~~ly~~~~~~llll   92 (252)
T 3gaa_A           19 LEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFV------GGKLRHPFRIYANNSNTVLVA   92 (252)
T ss_dssp             CGGGGCCSCEEEEECCCSSSHHHHHHHHHHHHHTCEEEEECCCTTSCCCEECG------GGCCBCSEEEEECTTSCEEEE
T ss_pred             ccCCCCCCCEEEEeCCCccHHHHHHHHHHHHHcCCeEEEEEecCCCCcEEEeC------CCeEecceEEEEECCCCEEEE
Confidence            34578999999999999999999999999999999999999999999999542      358999999999988999999


Q ss_pred             EEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCc
Q 023526           88 QQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNP  167 (281)
Q Consensus        88 q~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~  167 (281)
                      |++.|++....++|+++|++|+++.|+++||+|+|+++...     ...|.+|++ ++  .+..+.+++++....+.   
T Consensus        93 ~g~~p~p~~~~~~f~~~vl~~~~~~gv~~vv~Lgg~~~~~~-----~~~p~v~~~-t~--~~l~~~l~~~g~~~~~~---  161 (252)
T 3gaa_A           93 MCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGI-----PEERPVFAV-AE--KPKLDKFKKAGIQPADS---  161 (252)
T ss_dssp             EESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEESCC-----CSSCCCEEE-CC--HHHHHHHHHTTCEECCC---
T ss_pred             EecCCCChHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCC-----CCCCceEEE-cC--HHHHHHHHhcCCcccCC---
Confidence            99999999999999999999999999999999999987631     113667877 32  33333445554432210   


Q ss_pred             cccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHH---HHH
Q 023526          168 AQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLAD---AAC  244 (281)
Q Consensus       168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~---~l~  244 (281)
                                                      +.+.++.+.|+..|.++|++.++|...+.  -..||+.+.+.   +|+
T Consensus       162 --------------------------------g~i~G~~g~Ll~~~~~~gi~a~~l~~~vp--~y~pdP~AA~~lL~~l~  207 (252)
T 3gaa_A          162 --------------------------------AIIAGMGGGILNECLVRKITGLSFITPTS--VDIPDPGAVLSIIEAIN  207 (252)
T ss_dssp             --------------------------------SEECHHHHHHHHHHHHHTCEEEEEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred             --------------------------------CCcCCHHHHHHHHHHHcCCCEEEEEEeCC--CCCCCHHHHHHHHHHHH
Confidence                                            11234456688889999999999999998  66799888665   467


Q ss_pred             HHhccCC
Q 023526          245 KFLRLNP  251 (281)
Q Consensus       245 ~~L~~~~  251 (281)
                      +++++.-
T Consensus       208 ~~~gl~i  214 (252)
T 3gaa_A          208 KAYNLKI  214 (252)
T ss_dssp             HHHCCCC
T ss_pred             HHhCCCC
Confidence            7888754

>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1

Probab=99.81  E-value=1.4e-19  Score=168.45  Aligned_cols=190  Identities=12%  Similarity=0.095  Sum_probs=140.3

Q ss_pred             CCCCCEE---EEcccCccchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeCC
Q 023526           12 SESCSNL---ILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESSS   81 (281)
Q Consensus        12 ~~~~~tL---I~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~~   81 (281)
                      +.++++|   |.|++++|+||++|++||+++|++++||+||++++       ||++-..+.   -.+....++|||..++
T Consensus        22 ~~~~pvli~a~eG~~daG~vg~iA~~hLi~~l~~~~va~id~d~l~Dy~~~RP~v~~~~d~---~~~~~~p~~~ly~~~~   98 (319)
T 2p90_A           22 TAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIEHNE---VTSMDELNLGLHVVRD   98 (319)
T ss_dssp             SSSCCEEEEEEESSSBGGGHHHHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEECSSS---EEEECCCCCEEEEEEC
T ss_pred             cCCCCEEEEEeeeCCChhHHHHHHHHHHHHHcCCeEEEEEechhcccccCCCCcEEEECCc---ccccccCCeEEEEecC
Confidence            3689999   99999999999999999999999999999999999       777622110   0134457899998543


Q ss_pred             ---CcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhC
Q 023526           82 ---SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLG  158 (281)
Q Consensus        82 ---~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~  158 (281)
                         +.++++.  .|++....++|+++|++|+++.|+++||.|+|+++..-.    .....+++.++.  ..   ..+.+.
T Consensus        99 ~~g~~~lll~--gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~ph----trp~~V~~~at~--~~---l~~~~~  167 (319)
T 2p90_A           99 NDNKPFLMLS--GPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPH----TRPTVVTAHGNS--TD---RLKDQV  167 (319)
T ss_dssp             TTCCEEEEEE--EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCT----TSCCCEEEEESS--GG---GCSSCC
T ss_pred             CCCCeEEEEE--CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCC----CCCCCeEEEeCC--HH---HHhhhh
Confidence               3455544  599999999999999999999999999999999874311    112347877764  11   111110


Q ss_pred             cccccccCccccchhhhhhcccCCCCCCCCCCCccccccccc-CCCCChHHHHHHHHhcCCceEEEEE----EeccCCCH
Q 023526          159 WKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDY-YPSLPFAALFSCFKARGLKVTCLLC----YCSEGDNM  233 (281)
Q Consensus       159 ~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~lP~~~L~~~~~~~~i~~~~L~~----f~~EGDN~  233 (281)
                        ..                                  ...+ .++...+-|+..|.+++++.++|+.    ||.++++-
T Consensus       168 --~~----------------------------------~~~~~ipggi~glL~~~~~~~Gi~a~~l~~~vphYl~~~pdP  211 (319)
T 2p90_A          168 --SL----------------------------------DTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYP  211 (319)
T ss_dssp             --CC----------------------------------CCCEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCH
T ss_pred             --cc----------------------------------ccCcEEeccHHHHHHHHHHHCCCCEEEEEEecCcccCCCCCH
Confidence              00                                  0111 1222345578899999999999998    66788888


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 023526          234 ADAFNLADAACKFLRLNP  251 (281)
Q Consensus       234 ~DA~~lA~~l~~~L~~~~  251 (281)
                      ..|.++.++|++++++.-
T Consensus       212 ~AA~~lL~~l~~l~gl~i  229 (319)
T 2p90_A          212 AATLKLLQSIADSADLNL  229 (319)
T ss_dssp             HHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHCCCC
Confidence            888888889999999864

>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}

Probab=99.76  E-value=4.1e-17  Score=147.03  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=131.0

Q ss_pred             CCCCCEEEEcccCc---cchHHHHHHHHHhccCCcEEEEEecCCc------ccccccCCCCCCCCC--Cc---ceeeEee
Q 023526           12 SESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV------LPCVGNDAYRPSPRG--DL---ALPLQAY   77 (281)
Q Consensus        12 ~~~~~tLI~p~~s~---GnVgqLA~DlLI~sl~~~~vG~l~s~~l------~P~vg~~~~~~~~~~--~l---~tp~evY   77 (281)
                      ++++++||.+|+|+   |+||.+|++||+++|++++||+||++.+      +|++.   +.   ++  .+   .+.+++|
T Consensus         2 ~l~~pvlI~gf~G~~DAG~vg~~a~~hL~~~l~~~~va~id~d~~~dy~~~rP~v~---~~---~g~~~~~~p~~~~~~~   75 (250)
T 3mnf_A            2 NAIDPVMVAAFEGWNDAGDAASTAVAHLDREWKGEVFAALDAEDYYDFQVNRPTVW---LD---GGVRKITWPTTRLSVV   75 (250)
T ss_dssp             ---CCEEEEEEESTTBTTSHHHHHHHHHHHHTTCEEEEECCGGGTCCTTTSCCEEE---EE---TTEEEEECCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCccChHHHHHHHHHHHHcCCeEEEEEechhccccCCCCCEEE---Ee---CCEEEeecCCceEEEE
Confidence            67899999999999   9999999999999999999999999988      89884   31   22  22   2336667


Q ss_pred             eeCC---CcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHH
Q 023526           78 ESSS---SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYC  154 (281)
Q Consensus        78 ~~~~---~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~  154 (281)
                      ..++   ++++++....|  ....++|++++++|+++.|+++||.|+|+++...+.    ....+++.+++     .+.+
T Consensus        76 ~~~d~~~~~~lll~g~eP--~~~w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~pht----rp~~v~~~at~-----~~l~  144 (250)
T 3mnf_A           76 RVGGEKPRDLVLVRGIEP--SMRWRSFCNELLAFAHELGVELVVVLGALLGDTPHT----RPVPVSGVTSD-----PDLA  144 (250)
T ss_dssp             EEESSSEEEEEEEEEECC--SSCHHHHHHHHHHHHHHHTCCEEEEEEEEEESCCTT----SCCCEEEEECC-----HHHH
T ss_pred             ecCCCCCCcEEEEECCCC--chHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC----CCcceEEEECC-----HHHH
Confidence            7533   67888877766  555899999999999999999999999996543211    12368887764     2334


Q ss_pred             HhhCcccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEec--cCCC
Q 023526          155 EQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCS--EGDN  232 (281)
Q Consensus       155 ~~L~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~--EGDN  232 (281)
                      ++++....+                                  -+ .++...+-|..+|.++|++.++|+..|.  - -+
T Consensus       145 ~~~~~~~~~----------------------------------~~-~p~gi~glL~~~~~~~gi~a~~l~~~vp~Y~-~~  188 (250)
T 3mnf_A          145 RTMDLEETK----------------------------------YE-GPTGIVGILQEACTHAGVPAVSLWAAVPHYV-SQ  188 (250)
T ss_dssp             HHSCCCCCC----------------------------------CC-SCCCHHHHHHHHHHHHTCCEEEEEEEEEGGG-CC
T ss_pred             Hhhhccccc----------------------------------cc-cCccHHHHHHHHHHHCCCCEEEEEEeCCccc-cC
Confidence            443211000                                  00 1223344578889999999999999872  1 24


Q ss_pred             HHHHHHHHH---HHHHHhccCC
Q 023526          233 MADAFNLAD---AACKFLRLNP  251 (281)
Q Consensus       233 ~~DA~~lA~---~l~~~L~~~~  251 (281)
                      .||+.+.+.   .|++++++.-
T Consensus       189 ~pdP~AA~~lL~~l~~~~gl~v  210 (250)
T 3mnf_A          189 PPNPKATLALLNRLEDLIDVRI  210 (250)
T ss_dssp             SCCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC
Confidence            567766555   4777888754

>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}

Probab=99.63  E-value=3.1e-15  Score=140.52  Aligned_cols=189  Identities=11%  Similarity=-0.012  Sum_probs=130.8

Q ss_pred             CCCCCEEEEcccC---ccchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeC-
Q 023526           12 SESCSNLILPALS---IGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS-   80 (281)
Q Consensus        12 ~~~~~tLI~p~~s---~GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~-   80 (281)
                      ++++++||.+|+|   +|+||.+|++||+++|++++||.||++.+       |+++-..+-   ..+....++++|..+ 
T Consensus        62 ~l~~pvLI~gf~G~~DAG~vg~iA~~hLi~~L~~~~va~~d~d~~~Dyr~~RP~v~~~~dg---~~~~~~P~~~ly~~~d  138 (351)
T 2wam_A           62 DGRGPVLVHALEGFSDAGHAIRLAAAHLKAALDTELVASFAIDELLDYRSRRPLMTFKTDH---FTHSDDPELSLYALRD  138 (351)
T ss_dssp             TSCCCEEEEEEESSCCGGGHHHHHHHHHHHHSEEEEEEEECHHHHCBTTTSCCEEEEETTE---EEEECCCCEEEEEEEC
T ss_pred             ccCCCEEEEeCCCCcccchHHHHHHHHHHHHcCCeEEEEEechhccccccCCCcEEEEcCC---ceEeeCCceEEEEecc
Confidence            3789999999998   69999999999999999999999999987       555522110   013566789999643 


Q ss_pred             --CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhC
Q 023526           81 --SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLG  158 (281)
Q Consensus        81 --~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~  158 (281)
                        +.+++++..  |.+....++|+++|++|+++.|++.||.|+|+++.....   + ...+++.++.  .   +..+.++
T Consensus       139 ~~g~~~LlL~G--~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vpht---R-p~~V~~~at~--~---el~~~~~  207 (351)
T 2wam_A          139 SIGTPFLLLAG--LEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHT---R-PITMTAHSNN--R---ELISDFQ  207 (351)
T ss_dssp             TTCCEEEEEEE--ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT---S-CCCEEEEESS--G---GGGTTSC
T ss_pred             CCCCcEEEEEC--CCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCc---c-CcceEEEECC--H---HHHHhcC
Confidence              356777666  567777899999999999999999999999998754321   1 2247777764  1   1222222


Q ss_pred             cccccccCccccchhhhhhcccCCCCCCCCCCCccccccccc-CCCCChHHHHHHHHhcCCceEEEEEEec--cCCCHHH
Q 023526          159 WKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDY-YPSLPFAALFSCFKARGLKVTCLLCYCS--EGDNMAD  235 (281)
Q Consensus       159 ~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~lP~~~L~~~~~~~~i~~~~L~~f~~--EGDN~~D  235 (281)
                      ...                                    ..+ .+....+-|...|.++|++.++|...+-  - -+.||
T Consensus       208 ~~~------------------------------------~~~~gp~GisglL~~~~~~~Gi~a~~l~~~vP~Yl-a~~pd  250 (351)
T 2wam_A          208 PSI------------------------------------SEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHYL-TQTDY  250 (351)
T ss_dssp             CCC------------------------------------CSEEEECCHHHHHHHHHHHTTCCEEEEEEEEEGGG-TTSCC
T ss_pred             Ccc------------------------------------CcccccccHHHHHHHHHHHcCCCEEEEEEeCCccc-cCCCC
Confidence            100                                    000 0122134577889999999999987772  1 23456


Q ss_pred             HHHHHH---HHHHHhccCC
Q 023526          236 AFNLAD---AACKFLRLNP  251 (281)
Q Consensus       236 A~~lA~---~l~~~L~~~~  251 (281)
                      +.+.+.   .|++++++.-
T Consensus       251 P~AA~alL~~L~~llgl~i  269 (351)
T 2wam_A          251 PAAAQALLEQVAKTGSLQL  269 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHCCCC
Confidence            655444   5677888754

>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}

Probab=99.62  E-value=3.8e-15  Score=138.65  Aligned_cols=187  Identities=13%  Similarity=0.051  Sum_probs=130.6

Q ss_pred             cCCCCCEEEEcccCc---cchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeC
Q 023526           11 LSESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS   80 (281)
Q Consensus        11 ~~~~~~tLI~p~~s~---GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~   80 (281)
                      ..+++.+||.+|+|.   |+||.+|++||+++|++++||.||++.+       |++.-.++-   -.+.-..+++||..+
T Consensus        24 ~~l~~pvLI~af~G~~DAG~vg~~A~~hLi~~l~~~~va~~d~d~l~Dyr~~RP~v~~~~d~---~~~~~~P~~~ly~~~  100 (325)
T 3e35_A           24 QESAGLVMLYHFDGYIDAGETGDQIVDQVLDSLPHQVVARFDHDRLVDYRARRPLLTFKRDT---WSDYEEPTIEVRLVQ  100 (325)
T ss_dssp             HCTTCEEEEEEEESSCCGGGHHHHHHHHHHHHSCEEEEEEECHHHHSCTTTSCCCEEEETTE---EEEECCCCCEEEEEE
T ss_pred             cccCCCEEEEeCCCCCccCHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCcEEEEcCc---ceeeecCCeEEEEec
Confidence            356899999999996   9999999999999999999999999988       444421110   011234799999853


Q ss_pred             ---CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCC-eEEEEecCCCCCchhHHHh
Q 023526           81 ---SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGP-QIYYLSSTSVDGTDDYCEQ  156 (281)
Q Consensus        81 ---~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~-~~~~~~s~~~~~~~~~~~~  156 (281)
                         ++.++++..  |.+....++|+++|++|+++.|+++||.|+|+.+.....     .| .++..++.  .   +.+++
T Consensus       101 d~~~~~~llL~G--~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHt-----RP~~V~~~at~--~---el~~~  168 (325)
T 3e35_A          101 DATGAPFLFLSG--PEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHT-----RPVGITPHGSR--T---DLVPG  168 (325)
T ss_dssp             CTTCCEEEEEEE--ECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTT-----SCCCEEEEESC--G---GGCC-
T ss_pred             CCCCCcEEEEEC--CCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC-----CCceeEEEeCC--H---HHHHh
Confidence               467777775  667777899999999999999999999999998765322     24 47877764  1   11222


Q ss_pred             hCcccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCC---hHHHHHHHHhcCCceEEEEEEeccC-CC
Q 023526          157 LGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLP---FAALFSCFKARGLKVTCLLCYCSEG-DN  232 (281)
Q Consensus       157 L~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP---~~~L~~~~~~~~i~~~~L~~f~~EG-DN  232 (281)
                      ++..    .                                ..  ..+|   .+.|..+|.++|++.++|...+-.= -+
T Consensus       169 ~~~~----~--------------------------------~~--~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPhYla~  210 (325)
T 3e35_A          169 HRSP----F--------------------------------EE--AQVPGSAEALVEYRLAQAGHDVLGVAAHVPHYVAR  210 (325)
T ss_dssp             --------C--------------------------------CC--CCCCCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTT
T ss_pred             hccc----c--------------------------------cc--CCCcccHHHHHHHHHHHCCCCeEEEEEEcCccccC
Confidence            1100    0                                00  1233   3357788999999999999988420 13


Q ss_pred             HHHHHHHHH---HHHHHhccC
Q 023526          233 MADAFNLAD---AACKFLRLN  250 (281)
Q Consensus       233 ~~DA~~lA~---~l~~~L~~~  250 (281)
                      .||+.+.+.   .|++++++.
T Consensus       211 ~p~P~AA~alL~~L~~~~gl~  231 (325)
T 3e35_A          211 SAYPDAALTVLEAITAATGLV  231 (325)
T ss_dssp             SCCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCC
Confidence            455555444   577788775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d2p90a1	269	Hypothetical protein Cgl1923 {Corynebacterium glut	99.73

>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Cgl1923-like
family: Cgl1923-like
domain: Hypothetical protein Cgl1923
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.73  E-value=4.4e-17  Score=145.73  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=126.2

Q ss_pred             cCCCCCEEEEcccC---ccchHHHHHHHHHhccCCcEEEEEecCCcc------cccccCCCCCCCCCCcc------eeeE
Q 023526           11 LSESCSNLILPALS---IGNVGQLAVDLLVSSTGAETVGYLDDQFVL------PCVGNDAYRPSPRGDLA------LPLQ   75 (281)
Q Consensus        11 ~~~~~~tLI~p~~s---~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~------P~vg~~~~~~~~~~~l~------tp~e   75 (281)
                      .+.+|++||++|+|   +|+||.+|++|||++|++++||+||++.++      |.|..+      ++++.      .++.
T Consensus        16 ~~~~~p~li~~f~G~~DaG~vg~ia~~~Li~~l~~~~v~~i~sd~f~d~~~~rP~v~~~------~~~~~~~~~p~~~~~   89 (269)
T d2p90a1          16 QTAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIE------HNEVTSMDELNLGLH   89 (269)
T ss_dssp             SSSSCCEEEEEEESSSBGGGHHHHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEEC------SSSEEEECCCCCEEE
T ss_pred             CCCCCCEEEEeCCCCccHhHHHHHHHHHHHHHcCCeEEEEEecccccccCCCCCEEEEE------CCeEEecccccccce
Confidence            57889999999999   899999999999999999999999999884      555221      22332      2333


Q ss_pred             -eeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHH
Q 023526           76 -AYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYC  154 (281)
Q Consensus        76 -vY~~~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~  154 (281)
                       ++...++.+++++.  |.+....++|+++|++|+++.|+++||+|+|+++...+.    ....+++.++.     .+.+
T Consensus        90 ~~~~~~~~~illl~g--~eP~~~~~~~a~~il~~~~~~gv~~ii~lgg~~~~~pht----r~~~~~~~~~~-----~~~~  158 (269)
T d2p90a1          90 VVRDNDNKPFLMLSG--PEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPHT----RPTVVTAHGNS-----TDRL  158 (269)
T ss_dssp             EEECTTCCEEEEEEE--ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT----SCCCEEEEESS-----GGGC
T ss_pred             eeecCCCCeEEEEec--CCCchhHHHHHHHHHHHHHHcCCcEEEEcCcccCCCCCc----cceEEEEecCc-----HHHH
Confidence             33334566777765  455566789999999999999999999999998765322    12233333322     1122


Q ss_pred             HhhCcccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccC-CCH
Q 023526          155 EQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEG-DNM  233 (281)
Q Consensus       155 ~~L~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EG-DN~  233 (281)
                      +.++....                                   +...+.+-.+.|...|..++++.++|.+.+.+= -++
T Consensus       159 ~~~~~~~~-----------------------------------~~~~~~gi~g~l~~~~~~~gi~~i~l~a~vp~y~~~~  203 (269)
T d2p90a1         159 KDQVSLDT-----------------------------------RMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSAS  203 (269)
T ss_dssp             SSCCCCCC-----------------------------------CEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTS
T ss_pred             Hhcccccc-----------------------------------ccCccchhHHHHHHHHHhcCCCeEEEEEEcCccccCC
Confidence            22211000                                   000112213346677889999999998877532 466


Q ss_pred             HHHHHHHHH---HHHHhccCC
Q 023526          234 ADAFNLADA---ACKFLRLNP  251 (281)
Q Consensus       234 ~DA~~lA~~---l~~~L~~~~  251 (281)
                      ||+.+.+..   |++++++.-
T Consensus       204 pdP~AA~~lL~~l~~~~gl~i  224 (269)
T d2p90a1         204 PYPAATLKLLQSIADSADLNL  224 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
Confidence            787776664   677777753