Citrus Sinensis ID: 023528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEED
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEEccccccHHcccccccccccccEEccccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccHHHHHHccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEEcccHHHHHHccccccccccccccccccccccEEEEccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccEEEEEcccccHHcccccccccccccEEEEcccccccccccHEEEcccccccEccccccccccccEEEEcccccHHcccHHHcccccccEEEEcccccccccccccccccccEEEEcccHHHHcccHHHccccccccEEEEccccccccccccccccccEEEEcccccHHHcccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHccccccccccccccccccccccEEEEcccEEcccc
Coil and Loop (DISEMBL)
mkqdisrsssgstsrtpfssenelpaTLEHLEVThcsnlaflswngnlpRALKYLYVKDCSKLESLAERIWifgcpnlesfpegglpstkltrltiwkcknlkalpncIHNLTSLLHLEIREcrslvsfpedgfptnlqslvvddlkiskplfewGLDRFACLRELRirggcpdlvssprfpasltqlgisdmptlkCLSSVgenltsletldlsncpklkyfskqglpksllrlgiddcplmekrwikadypytfatrywpmithipcvivngrfvfeed
Flexible Loop (DISEMBL)
mkqdisrsssgstsrtpfsseNELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGgcpdlvssprFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKyfskqglpkslLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEED
Low Complexity Region (SEG)
MKQDIsrsssgstsrtpfssENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEED
Disordered region (IsUnstruct)
**************************TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF***
Disordered Region (DISOPRED)
MKQDISRSSSGS*********NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWI******TFATRYWPMITHIPCVIVNGRFVFE**
Disordered Region (DISEMBL)
*********************NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEED
Disordered Region (DISPRO)
*KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.857	0.169	0.332	9e-27
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.590	0.127	0.288	3e-07
Q7XBQ9	970	Disease resistance protei	N/A	no	0.338	0.097	0.4	1e-06
Q40392	1144	TMV resistance protein N	N/A	no	0.637	0.156	0.298	3e-06
Q7XA39	988	Putative disease resistan	N/A	no	0.334	0.095	0.404	3e-05
Q7XA40	992	Putative disease resistan	N/A	no	0.298	0.084	0.386	0.0003

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  120 bits (302), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 27/268 (10%)

Query: 26   ATLEHLEV-THCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA------------ERIWI 72
            + LE+L + + CSNL  +++  +L   L+ L ++DC   ++ +            E + I
Sbjct: 1165 SQLEYLFIGSSCSNL--VNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEI 1222

Query: 73   FGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED 132
              CPNLE+FP+GGLP+ KL+ + +  CK L+ALP  +  LTSLL L I +C  + + P  
Sbjct: 1223 RDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGG 1282

Query: 133  GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLG 189
            GFP+NL++L +       P  EWGL     LR L I GG  D+ S P     P S+  L 
Sbjct: 1283 GFPSNLRTLCISLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGLLPKSVFSLR 1342

Query: 190  ISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWI 248
            IS    LK L+  G  +  ++ET+++S C KL+    + LP  L  L I  C L+ + + 
Sbjct: 1343 ISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFA 1401

Query: 249  KADYPYTFATRYWPMITHIPCVIVNGRF 276
            + +      T ++ ++ +IP V ++G  
Sbjct: 1402 EVE------TEFFKVL-NIPYVEIDGEI 1422

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 94/232 (40%), Gaps = 66/232 (28%)

Query: 24  LPATLEHLE-VTHC-------SNLAFLSWNGNLPRALKYLYVKDCSKLESLA--ERIWIF 73
           LPA L++L+ +T C         LAFL+  G       Y + K    ++SL   E + + 
Sbjct: 729 LPAGLDYLDCLTRCMPCEFRPEQLAFLNVRG-------YKHEKLWEGIQSLGSLEGMDLS 781

Query: 74  GCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDG 133
              NL   P+    +TKL  L +  CK+L  LP+ I NL  L+ LE++EC  L   P D 
Sbjct: 782 ESENLTEIPDLS-KATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTD- 839

Query: 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDM 193
              NL SL   DL                        GC  L S P    ++  L + + 
Sbjct: 840 --VNLSSLETLDL-----------------------SGCSSLRSFPLISTNIVWLYLENT 874

Query: 194 PTLKCLSSVGE----------------------NLTSLETLDLSNCPKLKYF 223
              +  S++G                       NL+SLETLDLS C  L+ F
Sbjct: 875 AIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSF 926

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 80  SFPEGGLPS-TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP--T 136
           SFPE    +   L  LTI +C NLK LP  + +L +L  L+I+ C +L S PE+G    +
Sbjct: 849 SFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLS 908

Query: 137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLV 176
           +L  L V+   + K L E GL     L  L+IR GCP L+
Sbjct: 909 SLTELFVEHCNMLKCLPE-GLQHLTTLTSLKIR-GCPQLI 946

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 52/231 (22%)

Query: 51  ALKYLYVKDCSKLESLAERIWIFG--CPNLESFPEGG----LPS------TKLTRLTIWK 98
           +L+YL ++ C  LE L E   I+G   P ++   +G     LPS      T +T+L +W 
Sbjct: 689 SLEYLGLRSCDSLEKLPE---IYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWN 745

Query: 99  CKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKP------ 151
            KNL ALP+ I  L SL+ L +  C  L S PE+ G   NL+     D  I +P      
Sbjct: 746 MKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIR 805

Query: 152 ----------------LFEW-----GLDRFACLRELR---IRGGCPDLVSSPRFPASLTQ 187
                            FE+     GL     L       I GG P+ + S    +SL +
Sbjct: 806 LNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGS---LSSLKK 862

Query: 188 LGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID 238
           L +S        SS+ + L +L++LDL +C +L    +  LP  L  L +D
Sbjct: 863 LDLSRNNFEHLPSSIAQ-LGALQSLDLKDCQRLTQLPE--LPPELNELHVD 910

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 80  SFPEGGLPS-TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP--T 136
           S PE    S T L  L+ +  KNLK LP  + +L +L  L+I  C SL SFPE G    T
Sbjct: 868 SLPEEMFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLT 927

Query: 137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDL 175
           +L  L V   K+ K L E GL     L  L +  GCP++
Sbjct: 928 SLTQLFVKYCKMLKCLPE-GLQHLTALTNLGV-SGCPEV 964

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 91  LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP--TNLQSLVVDDLKI 148
           L  L++   +NLK LP  + +L +L  L+IR C +L S PE+G    ++L  L V+   +
Sbjct: 883 LIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNM 942

Query: 149 SKPLFEWGLDRFACLRELRIRGGCPDLV 176
            K L E GL     L  L+IR GCP L+
Sbjct: 943 LKCLPE-GLQHLTTLTSLKIR-GCPQLI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
356554923	1399	PREDICTED: putative disease resistance R	0.932	0.187	0.386	7e-45
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.921	0.181	0.401	2e-43
224132254	552	predicted protein [Populus trichocarpa]	0.953	0.485	0.387	2e-40
147770925	1361	hypothetical protein VITISV_018147 [Viti	0.758	0.156	0.449	8e-40
255556671	1318	Disease resistance protein RPS2, putativ	0.850	0.181	0.371	8e-39
359487158	1245	PREDICTED: putative disease resistance p	0.854	0.192	0.409	3e-38
359487257	1330	PREDICTED: putative disease resistance p	0.814	0.172	0.428	3e-38
147825318	1824	hypothetical protein VITISV_003723 [Viti	0.811	0.125	0.430	1e-37
359495085	1345	PREDICTED: putative disease resistance p	0.825	0.172	0.430	3e-37
359495054	1347	PREDICTED: putative disease resistance R	0.782	0.163	0.422	9e-37

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 164/305 (53%), Gaps = 43/305 (14%)

Query: 14   SRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---- 69
            S T  S   ELP +++HL + +CS L+ LS  G LP++++ L ++ C KLES+A R    
Sbjct: 1098 SLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRN 1157

Query: 70   -------IW----------------------IFGCPNLESFPEGGLPSTKLTRLTIWKCK 100
                   IW                      I GCPNL SFPE GLP++ L+ L+I  C+
Sbjct: 1158 TSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCE 1217

Query: 101  NLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRF 160
             L ALPN ++NL SL  LEI  C S+  FPE  FP NL SL ++D    + +F WGL + 
Sbjct: 1218 KLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWINDHNACEAMFNWGLYKL 1277

Query: 161  ACLRELRIRGG---CPDLVSSPRFPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN 216
            + LR+L I GG    P        P++LT L +   P L+ LSS G   LTSL  L + N
Sbjct: 1278 SFLRDLTIIGGNLFMPLEKLGTMLPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYN 1337

Query: 217  CPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRF 276
            CPKL    ++GLP SLL L I DCP ++++  K         R W  I  +P V ++G+F
Sbjct: 1338 CPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKD------KGRDWLKIADVPYVEIDGKF 1391

Query: 277  VFEED 281
            +++ D
Sbjct: 1392 IYDSD 1396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 159/309 (51%), Gaps = 50/309 (16%)

Query: 14   SRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---- 69
            S T  +S  +LPATL HL +  C  L  LS  G LP AL+YL ++  SKL+ +AER    
Sbjct: 1110 SLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQN 1169

Query: 70   -------IW----------------------IFGCPNLESFPEGGLPSTKLTRLTIWKCK 100
                   IW                      IF C +  SFP  GLPS  L  L I  CK
Sbjct: 1170 TSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAAGLPSN-LRVLGIKNCK 1228

Query: 101  NLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRF 160
            NLKALPN + NLTSL  L+I      +  P++G PTNL  L + DLK  KP+FEWGL + 
Sbjct: 1229 NLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPTNLIELNMHDLKFYKPMFEWGLQQP 1288

Query: 161  ACLRELRIRGGCPDLVSSPR---------FPASLTQLGISDMPTLKCLSSVG-ENLTSLE 210
              L +L I G C D+ S P           P SL+ L IS    L+CLS  G +NLTSL 
Sbjct: 1289 TSLIKLSIHGECLDVDSYPGERENGVMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLN 1348

Query: 211  TLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCV 270
             L + NC KL    K+GLP SL +L I +CPL+      + +      + W  I HIPCV
Sbjct: 1349 QLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLL------SQHCNNEKGQEWSKIAHIPCV 1402

Query: 271  IVNGRFVFE 279
            +++ +F+ E
Sbjct: 1403 LIDNKFIHE 1411

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/325 (38%), Positives = 167/325 (51%), Gaps = 57/325 (17%)

Query: 2   KQDISRSSSGSTSR----------TPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRA 51
           K D + S SG+ S              +S  ELP+ L++L+V  CS L  LS    LP  
Sbjct: 225 KSDENTSCSGNNSSLLEYLYVGICNSLTSIGELPSALKYLQVCSCSKLKSLSSRDKLPAG 284

Query: 52  LKYLYVKDCSKLESLAER-----------IW----------------------IFGCPNL 78
           LK+L +  C  LES+ +R           IW                      I+ CP L
Sbjct: 285 LKHLAIDSCENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPAL 344

Query: 79  ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNL 138
            SF   GLP   L RL I KC  LKA+P+ +HNL SL  L I  C  +VSFPE+GFPT+L
Sbjct: 345 VSFAAEGLP-INLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSL 403

Query: 139 QSLVVDDLKISKPLFEWGLDRFACLRELRIRGG-----CPDLVSSPRFPASLTQLGISDM 193
             L   DLKI + LF WG+ + + LR L I+GG      P +    R P++L +L I D 
Sbjct: 404 TYLATVDLKICELLFNWGMHKLSALRTLIIQGGFSHISFPSVDMGVRLPSALNRLSIEDF 463

Query: 194 PTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADY 252
           P L+ LS  G +NL+SLE L +S+CPKL  F  +GLP SLL L I  CPL+ ++ IK   
Sbjct: 464 PNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQ-IKGR- 521

Query: 253 PYTFATRYWPMITHIPCVIVNGRFV 277
                 + W  I HIP + ++G+ V
Sbjct: 522 -----VKEWLKIRHIPYINIDGKVV 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770925|emb|CAN69703.1| hypothetical protein VITISV_018147 [Vitis vinifera]

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/236 (44%), Positives = 136/236 (57%), Gaps = 23/236 (9%)

Query: 52   LKYLYVKDCSKLESLA-------------ERIWIFGCPNLESFPEGGLPSTKLTRLTIWK 98
            L+YL +++C  LESL              + +WI  CPNL SFP GGLP+  L  L I  
Sbjct: 1121 LEYLLIRNCGNLESLYIPDGLHPVDLTSLKELWIHSCPNLVSFPRGGLPTPNLRELRIHG 1180

Query: 99   CKNLKALPNCIHNL-TSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDL-KISKPLFEWG 156
            CK LK+LP  +H L TSL  L I +C  + SFPE G PTNL SL + +  K+     EWG
Sbjct: 1181 CKKLKSLPQGMHTLLTSLQGLYIAKCPEIDSFPEGGLPTNLSSLYIMNCNKLLACRMEWG 1240

Query: 157  LDRFACLRELRIRGGCPDLVSSPRF-PASLTQLGISDMPTLKCLSSVG-ENLTSLETLDL 214
            L     LR LRI G   +     RF P++LT L I   P LK L + G ++LTSLETL++
Sbjct: 1241 LQTLPFLRTLRIAGYEKERFPEERFLPSTLTSLQIRGFPNLKSLDNKGLQHLTSLETLEI 1300

Query: 215  SNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCV 270
              C KLK F KQGLP SL RL ID+CPL++KR  +         + WP ++HIPC+
Sbjct: 1301 WECEKLKSFPKQGLPSSLSRLDIDNCPLLKKRCQRD------KGKEWPNVSHIPCI 1350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556671|ref|XP_002519369.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223541436|gb|EEF42986.1| Disease resistance protein RPS2, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 150/283 (53%), Gaps = 44/283 (15%)

Query: 28   LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAE------------------- 68
            LE LE+  C +L F    G LP +LK L + DC +LES A                    
Sbjct: 1038 LESLEIIKCPSLKFFP-RGELPASLKVLKIWDCMRLESFARPTLQNTLSLECLSVRKYSN 1096

Query: 69   ---------------RIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLT 113
                            + I  C  LESFPE GLPS  L R  ++ C NLK+LP+ + +LT
Sbjct: 1097 LITLPECLHCFSHLIELHISYCAGLESFPERGLPSLNLRRFYVFNCPNLKSLPDNMQSLT 1156

Query: 114  SLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCP 173
            +L HL +  C  ++SFPE G P+NL S+ V + +    L EWGL R   L++L I GGCP
Sbjct: 1157 ALQHLGVSSCPGILSFPEGGLPSNLTSIRVSNCENLPHLSEWGLHRLLFLKDLTISGGCP 1216

Query: 174  DLVSSP---RFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPK 230
            +LVS     R PA+L  L I  +  L+ LS   ++LTSLE L+++ CPKL+   K+GLP 
Sbjct: 1217 NLVSFAQDCRLPATLISLRIGKLLNLESLSMALQHLTSLEVLEITECPKLRSLPKEGLPV 1276

Query: 231  SLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVN 273
            +L  L I DCP+++++ +          +Y  +I +IP V ++
Sbjct: 1277 TLSVLEILDCPMLKRQLLNK------KGKYASIIANIPRVEID 1313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487158|ref|XP_003633523.1| PREDICTED: putative disease resistance protein RGA4-like, partial [Vitis vinifera]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 153/271 (56%), Gaps = 31/271 (11%)

Query: 27   TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIW---------IFGCPN 77
             LE +++  C +L F    G LP +LK L ++DC  ++SL E I          I GC +
Sbjct: 982  VLERVQIMRCPSLLFFP-KGELPTSLKQLIIEDCENVKSLPEGIMRNCNLEQLNIEGCSS 1040

Query: 78   LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFP 135
            L SFP G LPST L  L IW C NL+ LP+ + NLTSL +L+IR C SL SFPE   GF 
Sbjct: 1041 LTSFPSGELPST-LKHLVIWNCGNLELLPDHLQNLTSLEYLKIRGCPSLESFPEGGLGFA 1099

Query: 136  TNLQSLVVDDLK-ISKPLFEWGLDRFACLRELRIR-GGCPDLVSSP--------RFPASL 185
             NL+ + + D + +  PL EWGL+R   L+ L I  GG  ++VS          R P SL
Sbjct: 1100 PNLRDVDITDCENLKTPLSEWGLNRLLSLKNLTIAPGGYQNVVSFSHDHDDCHLRLPTSL 1159

Query: 186  TQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYF-SKQGLPKSLLRLGIDDCPLM 243
            T+L I D   L+ ++S+    L SLE L +S+CPKL+ F  K+GLP +L  + I  CP++
Sbjct: 1160 TRLHIGDFQNLESMASLPLPTLISLEDLCISDCPKLQQFLPKEGLPATLGYIEIQGCPII 1219

Query: 244  EKRWIKADYPYTFATRYWPMITHIPCVIVNG 274
            EKR +K         + WP + HIP + + G
Sbjct: 1220 EKRCLKG------RGKDWPHVAHIPAIHIGG 1244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487257|ref|XP_002269571.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/250 (42%), Positives = 141/250 (56%), Gaps = 21/250 (8%)

Query: 28   LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
            LE+L +T+C NL  L     +P  L ++ +     LE       I  CPNL SFP GGLP
Sbjct: 1086 LEYLHITNCGNLESLY----IPDGLHHVELTSLQSLE-------ISNCPNLVSFPRGGLP 1134

Query: 88   STKLTRLTIWKCKNLKALPNCIHNL-TSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDL 146
            ++ L RL I  C+ LK+LP  +H L TSL +L I  C  + SFPE G PTNL  L + + 
Sbjct: 1135 TSNLRRLGIRNCEKLKSLPQGMHALLTSLQYLHISSCPEIDSFPEGGLPTNLSDLHIGNC 1194

Query: 147  -KISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRF-PASLTQLGISDMPTLKCLSSVG- 203
             K+     EWGL     LR L I G   +     RF P++LT L I   P LK L + G 
Sbjct: 1195 NKLLACRMEWGLQTLPFLRTLEIEGYEKERFPDERFLPSTLTFLQIRGFPNLKSLDNKGL 1254

Query: 204  ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPM 263
            ++LTSLETL++  C KLK F KQGLP SL RL I  CPL++KR  + +       + WP 
Sbjct: 1255 QHLTSLETLEIWKCGKLKSFPKQGLPSSLSRLYIRRCPLLKKRCQREE------GKEWPN 1308

Query: 264  ITHIPCVIVN 273
            I+HIPC++ +
Sbjct: 1309 ISHIPCIVFD 1318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825318|emb|CAN73260.1| hypothetical protein VITISV_003723 [Vitis vinifera]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/251 (43%), Positives = 147/251 (58%), Gaps = 23/251 (9%)

Query: 28   LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
            LE+L + +C NL  L     +P  L ++   D + L+SL     I+ CPNL SFP GGLP
Sbjct: 1098 LEYLRIINCGNLESLY----IPDGLHHV---DLTSLQSLE----IWECPNLVSFPRGGLP 1146

Query: 88   STKLTRLTIWKCKNLKALPNCIHN-LTSLLHLEIRECRSLVSFPEDGFPTNLQSL-VVDD 145
            +  L +L IW C+ LK+LP  +H  LTSL +L I++C  + SFPE G PTNL  L +++ 
Sbjct: 1147 TPNLRKLWIWNCEKLKSLPQGMHALLTSLHYLRIKDCPEIDSFPEGGLPTNLSDLHIMNC 1206

Query: 146  LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSP--RF-PASLTQLGISDMPTLKCLSSV 202
             K+     EW L     LR+L I G    + S P  RF P++LT L I +   LK L + 
Sbjct: 1207 NKLMACRMEWRLQTLPFLRKLEIEGLEERMESFPEERFLPSTLTSLIIDNFANLKSLDNK 1266

Query: 203  G-ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYW 261
            G E+LTSLETL + +C KL+   KQGLP SL RL I  CPL+EKR  +         + W
Sbjct: 1267 GLEHLTSLETLSIYDCEKLESLPKQGLPSSLSRLSIRKCPLLEKRCQRD------KGKKW 1320

Query: 262  PMITHIPCVIV 272
            P I+HIPC+++
Sbjct: 1321 PNISHIPCIVI 1331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495085|ref|XP_003634909.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/253 (43%), Positives = 139/253 (54%), Gaps = 21/253 (8%)

Query: 28   LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
            LE L + +C+NL  LS    L          D + L SL  R     CPNL SFP GGLP
Sbjct: 1101 LEKLHLWNCTNLESLSIRDGLHHV-------DLTSLRSLEIR----NCPNLVSFPRGGLP 1149

Query: 88   STKLTRLTIWKCKNLKALPNCIHNL-TSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDL 146
            +  L  L I  CK LK+LP  +H L TSL  L I  C  + SFPE G PTNL SL + + 
Sbjct: 1150 TPNLRMLDIRNCKKLKSLPQGMHTLLTSLQDLYISNCPEIDSFPEGGLPTNLSSLYIMNC 1209

Query: 147  -KISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRF-PASLTQLGISDMPTLKCLSSVG- 203
             K+     EWGL     LR L+I G   +     RF P++LT LGI   P LK L + G 
Sbjct: 1210 NKLLACRMEWGLQTLPFLRTLQIAGYEKERFPEERFLPSTLTSLGIRGFPNLKSLDNKGL 1269

Query: 204  ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPM 263
            ++LTSLETL++  C KLK F KQGLP SL RL I+ CPL++KR  +         + WP 
Sbjct: 1270 QHLTSLETLEIWKCEKLKSFPKQGLPSSLSRLYIERCPLLKKRCQRD------KGKEWPN 1323

Query: 264  ITHIPCVIVNGRF 276
            ++HIPC+  +  +
Sbjct: 1324 VSHIPCIAFDIHY 1336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495054|ref|XP_002267622.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 136/246 (55%), Gaps = 26/246 (10%)

Query: 52   LKYLYVKDCSKLESLA-------------ERIWIFGCPNLESFPEGGLPSTKLTRLTIWK 98
            L+ LY+ DC+ LES               +RI I+ CPNL SFP+GGLP++ L  L I  
Sbjct: 1107 LETLYIGDCTNLESFYIPDGLHNMDLTSLQRIHIWNCPNLVSFPQGGLPASNLRDLCIDN 1166

Query: 99   CKNLKALPNCIHN-LTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD-LKISKPLFEWG 156
            CK LK+LP  +H  LTSL  L+I +C  +VSFPE G PTNL SL +    K+ +   EWG
Sbjct: 1167 CKKLKSLPQRMHTLLTSLEDLDIYDCSEIVSFPEGGLPTNLSSLDIGSCYKLMESRKEWG 1226

Query: 157  LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLET 211
            L     LR L I GG   L S        P++L    I D P LK L ++G +NLTSLE 
Sbjct: 1227 LQTLPSLRGLVIDGGTGGLESFSEEWLLLPSTLFSFSIFDFPDLKYLDNLGLQNLTSLEI 1286

Query: 212  LDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVI 271
            L++ NC KLK F KQGLP SL  L I  CP+++KR  +         + W  I HI  + 
Sbjct: 1287 LEMRNCVKLKSFPKQGLPSSLTALQIYGCPVLKKRCQRD------KGKEWRKIAHIHWID 1340

Query: 272  VNGRFV 277
            ++G  +
Sbjct: 1341 MDGEVM 1346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.843	0.166	0.340	4.4e-27
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.768	0.177	0.331	5.3e-11
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.711	0.168	0.303	3e-10
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.754	0.173	0.274	9.7e-10
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.683	0.096	0.315	1e-09
TAIR|locus:2010738	1007	WRR4 "WHITE RUST RESISTANCE 4"	0.754	0.210	0.276	9.5e-09
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.743	0.154	0.290	1.4e-08
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.807	0.190	0.286	1.5e-08
TAIR|locus:2152252	986	AT5G38850 [Arabidopsis thalian	0.676	0.192	0.287	2.7e-08
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.690	0.149	0.305	2.9e-08

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.4e-27, P = 4.4e-27
 Identities = 90/264 (34%), Positives = 142/264 (53%)

Query:    28 LEHLEV-THCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA------------ERIWIFG 74
             LE+L + + CSNL  +++  +L   L+ L ++DC   ++ +            E + I  
Sbjct:  1167 LEYLFIGSSCSNL--VNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRD 1224

Query:    75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGF 134
             CPNLE+FP+GGLP+ KL+ + +  CK L+ALP  +  LTSLL L I +C  + + P  GF
Sbjct:  1225 CPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGF 1284

Query:   135 PTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGIS 191
             P+NL++L +       P  EWGL     LR L I GG  D+ S P     P S+  L IS
Sbjct:  1285 PSNLRTLCISLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGLLPKSVFSLRIS 1344

Query:   192 DMPTLKCLSSVGENLT-SLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKA 250
                 LK L+  G + T ++ET+++S C KL+    + LP  L  L I  C L+ + + + 
Sbjct:  1345 RFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFAEV 1403

Query:   251 DYPYTFATRYWPMITHIPCVIVNG 274
             +      T ++ ++ +IP V ++G
Sbjct:  1404 E------TEFFKVL-NIPYVEIDG 1420

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 81/244 (33%), Positives = 107/244 (43%)

Query:    23 ELP----AT-LEHLEVTHCSNLAFLSWN-GNLPRALKYLYVKDCSKL----ESLAERIWI 72
             ELP    AT LE L +  CS+L  L ++ GN  + LK L +  CS L     S+   I +
Sbjct:   689 ELPDLSSATNLEVLNLNGCSSLVELPFSIGNATKLLK-LELSGCSSLLELPSSIGNAINL 747

Query:    73 ----FG-CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLV 127
                 F  C NL   P     +T L  L +  C +LK LP+ I N T+L  L +  C SL 
Sbjct:   748 QTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLK 807

Query:   128 SFPED-GFPTNLQSLVVDDLKISKPLFEW--GLDRFACLRELRIRGGCPDLVSSPRFPAS 184
               P   G  TNL+ L    L     L +    +     L +L I  GC  LV  P F   
Sbjct:   808 ELPSSIGNCTNLKEL---HLTCCSSLIKLPSSIGNAINLEKL-ILAGCESLVELPSFIGK 863

Query:   185 LTQLGISDMPTLKCL----SSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDC 240
              T L I ++  L CL    S +G NL  L  L L  C KL+        + L  L + DC
Sbjct:   864 ATNLKILNLGYLSCLVELPSFIG-NLHKLSELRLRGCKKLQVLPTNINLEFLNELDLTDC 922

Query:   241 PLME 244
              L++
Sbjct:   923 ILLK 926

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 67/221 (30%), Positives = 103/221 (46%)

Query:    28 LEHLEVTHCSNLAFL-SWNGNLPRALKYLYVKDCSKL----ESLA-----ERIWIFGCPN 77
             L+ L +  CS+L  L S  GN+  +LK L +  CS L     S+      ++++  GC +
Sbjct:   730 LKKLFLNRCSSLVKLPSSFGNVT-SLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSS 788

Query:    78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTN 137
             L   P     +T L  L +  C +L   P+ + NLT L  L +  C SLV  P  G   N
Sbjct:   789 LVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVIN 848

Query:   138 LQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLG---ISDMP 194
             LQSL + D      L  + ++    L  L +  GC +L+  P    ++T L    ++   
Sbjct:   849 LQSLYLSDCSSLMEL-PFTIENATNLDTLYL-DGCSNLLELPSSIWNITNLQSLYLNGCS 906

Query:   195 TLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRL 235
             +LK L S+ EN  +L++L L  C  L       LP S+ R+
Sbjct:   907 SLKELPSLVENAINLQSLSLMKCSSLVE-----LPSSIWRI 942

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 65/237 (27%), Positives = 106/237 (44%)

Query:    28 LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA--------ERIWIFGCPNLE 79
             LE L++  CS+L  L  +     +L+ LY++ CS L  L         E +++  C +LE
Sbjct:   741 LEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLE 800

Query:    80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNL 138
               P   + +  L +L++  C  +  LP  I N T+L  L++  C SL+  P   G  TNL
Sbjct:   801 KLPPS-INANNLQQLSLINCSRVVELP-AIENATNLQKLDLGNCSSLIELPLSIGTATNL 858

Query:   139 QSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSP-----RFPASLTQLGISDM 193
             + L +     S       +     L+E  +   C +LV  P     +F  +L   G S +
Sbjct:   859 KELNISGCS-SLVKLPSSIGDITNLKEFDL-SNCSNLVELPININLKFLDTLNLAGCSQL 916

Query:   194 ---PTL--KCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEK 245
                P +  K  +   + ++ L  L ++NC  L   S   LP SL  L  D+C  +E+
Sbjct:   917 KSFPEISTKIFTDCYQRMSRLRDLRINNCNNL--VSLPQLPDSLAYLYADNCKSLER 971

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 65/206 (31%), Positives = 95/206 (46%)

Query:    21 ENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES 80
             E  +P++  H        L  L W  +L  ++    + D S   +L E I  + C +L  
Sbjct:   645 ELNMPSSTCHTLWEGSKALRNLKWM-DLSYSISLKELPDLSTATNLEELILKY-CVSLVK 702

Query:    81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQ 139
              P       KL  L +  C ++  LP+   N+T L  L++ EC SLV  P   G   NLQ
Sbjct:   703 VPSCVGKLGKLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQ 762

Query:   140 SLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKC 198
             +L +  L++ K PL    + +F  L++  I  GC  LV  P F  + T L   D+     
Sbjct:   763 NLDLGCLRLLKLPL---SIVKFTNLKKF-ILNGCSSLVELP-FMGNATNLQNLDLGNCSS 817

Query:   199 L----SSVGENLTSLETLDLSNCPKL 220
             L    SS+G N  +L+ LDLSNC  L
Sbjct:   818 LVELPSSIG-NAINLQNLDLSNCSSL 842

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2010738 WRR4 "WHITE RUST RESISTANCE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 62/224 (27%), Positives = 102/224 (45%)

Query:    22 NELPATLEHL-EVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES 80
             N   + L+ L E T C  LA L    +L R+     + D S   +L E +++  C  L  
Sbjct:   607 NMQDSELQKLWEGTQC--LANLK-KIDLSRSSCLTELPDLSNATNL-EDLYVGSCTALVE 662

Query:    81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQS 140
              P       KL  + ++ C++L+ +P+ I NLTSL  L + +C  L  FP+   PT+++ 
Sbjct:   663 LPSSIGNLHKLAHIMMYSCESLEVIPSLI-NLTSLTFLNMNKCSRLRRFPD--IPTSIED 719

Query:   141 LVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLS 200
             + V    + +      L   + L+ ++I G     +     P S++ + IS+        
Sbjct:   720 VQVTGTTLEE--LPASLTHCSGLQTIKISGSVNLKIFYTELPVSVSHINISNSGIEWITE 777

Query:   201 SVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLME 244
                + L +L  L LS C +L   S   LP+SL  L  DDC  +E
Sbjct:   778 DCIKGLHNLHDLCLSGCKRL--VSLPELPRSLKILQADDCDSLE 819

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 71/244 (29%), Positives = 115/244 (47%)

Query:    25 PAT--LEHLEVTHCSNLAFLS------WNGNLPRALKYLY-----VKDCSK---LESLAE 68
             PAT  L+HL V + S    +       + G  PR LK LY     +++ +    L SL E
Sbjct:   499 PATRHLQHLRVINLSGCVEIKSTQLEEFQG-FPRNLKELYLSGTGIREVTSSIHLSSL-E 556

Query:    69 RIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLL--HLEIRECRSL 126
              + +  C  L++ P G      L +L +  C  L+ + +   NL  L      IRE  S 
Sbjct:   557 VLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNIQDLPTNLKELYLAGTSIREVPSS 616

Query:   127 VSFPEDGFPTNLQSLVVDDLKISKPLFE--WGLDRFACLRELRIRGGCPDLVSSPRFPAS 184
             +         +L  LVV D +  K L +   G+     L  L I  GC +L S P  P +
Sbjct:   617 IC--------HLTQLVVFDAENCKKLQDLPMGMGNLISLTML-ILSGCSELRSIPDLPRN 667

Query:   185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLME 244
             L  L +++ P +K L S  E+LT L +LDL++C +L++   +   +S++R+ +  C  +E
Sbjct:   668 LRHLNLAETP-IKKLPSSFEDLTKLVSLDLNHCERLQHLQMESF-ESVVRVDLSGC--LE 723

Query:   245 KRWI 248
              ++I
Sbjct:   724 LKYI 727

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 71/248 (28%), Positives = 106/248 (42%)

Query:    25 PATLEHLEVTHCSNLAFLSWNGNLP-RALKYL------YVKDCSKLESLA--ERIWIFGC 75
             P  L  L++   SNL  L W G    R LK++      Y+K+   L +    E + +  C
Sbjct:   690 PEFLVELDM-RSSNLRKL-WEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNC 747

Query:    76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GF 134
              +L   P      T L  L +  C +L+ LP  I N T L  L+++ C SL+  P   G 
Sbjct:   748 SSLVELPSSIEKLTSLQILDLENCSSLEKLP-AIENATKLRELKLQNCSSLIELPLSIGT 806

Query:   135 PTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMP 194
              TNL+ L +     S       +     L    +   C  LV+ P    +L  L    M 
Sbjct:   807 ATNLKQLNISGCS-SLVKLPSSIGDITDLEVFDL-SNCSSLVTLPSSIGNLQNLCKLIMR 864

Query:   195 TLKCLSS--VGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRL---GIDDCPLMEKRWIK 249
                 L +  +  NL SL+TL+L++C +LK F +     S LRL    I + PL    W  
Sbjct:   865 GCSKLEALPININLKSLDTLNLTDCSQLKSFPEISTHISELRLKGTAIKEVPLSIMSWSP 924

Query:   250 -ADYPYTF 256
              AD+  ++
Sbjct:   925 LADFQISY 932

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2152252 AT5G38850 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 60/209 (28%), Positives = 98/209 (46%)

Query:    28 LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA--------ERIWIFGCPNLE 79
             LE L++  C NL  L  + +    LKYL +  C +L+ +         E + ++GC  L+
Sbjct:   639 LEELDLRACQNLVELPSSFSYLHKLKYLNMMGCRRLKEVPPHINLKSLELVNMYGCSRLK 698

Query:    80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQ 139
             SFP+    ST ++ L I    +++ LP  +   + L  LEI + R+L        P NL 
Sbjct:   699 SFPD---ISTNISSLDI-SYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTH--VPLNLT 752

Query:   140 SLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCL 199
              L + + +I K      +     L+ L + GGC  L S P  P SL  L  ++  +L+ +
Sbjct:   753 YLDLSETRIEK--IPDDIKNVHGLQILFL-GGCRKLASLPELPGSLLYLSANECESLESV 809

Query:   200 SSVGENLTSLETLDLSNCPKLKYFSKQGL 228
             S      TS   L  +NC KL   +++G+
Sbjct:   810 SCPFN--TSYMELSFTNCFKLNQEARRGI 836

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 65/213 (30%), Positives = 99/213 (46%)

Query:    23 ELPAT------LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLES---LAERI-WI 72
             E+P+T      L  LE+  C+ L  L  + NL  +L+ L +  CS L S   ++E I W+
Sbjct:   878 EIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLS-SLETLDLSGCSSLRSFPLISESIKWL 936

Query:    73 FGCPN--LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFP 130
             +   N  +E  P+    +T L  L +  CK+L  LP  I NL  L+  E++EC  L   P
Sbjct:   937 Y-LENTAIEEIPDLS-KATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLP 994

Query:   131 EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGI 190
              D    NL SL++ DL     L  + L     +          ++ S+      L +L +
Sbjct:   995 ID---VNLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEM 1051

Query:   191 SDMPTLKCLSSVGENLTSLETLDLSNCPKLKYF 223
              +   L+ L +   NL+SL  LDLS C  L+ F
Sbjct:  1052 KECTGLEVLPT-DVNLSSLMILDLSGCSSLRTF 1083

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00660113 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)

Query: 68  ERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLV 127
            R+++   P+L   P       KL  L I  C NL+ LP  I NL SL  L++  C  L 
Sbjct: 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839

Query: 128 SFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQ 187
           +FP+    TN+  L +    I +    W +++F+ L  L +  GC +L            
Sbjct: 840 TFPD--ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDM-NGCNNLQ----------- 883

Query: 188 LGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL 232
                      +S     L  LET+D S+C  L   S  G P  +
Sbjct: 884 ----------RVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV 918

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 41/218 (18%)

Query: 61  SKLESLAE---------RIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPN---- 107
           SKLE L +          I + G  NL+  P+  + +T L  L +  C +L  LP+    
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM-ATNLETLKLSDCSSLVELPSSIQY 679

Query: 108 -----------CIH--------NLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKI 148
                      C +        NL SL  L +  C  L SFP+    TN+  L +D+  I
Sbjct: 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAI 737

Query: 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFP------ASLTQLGISDMPTLKCLSSV 202
            +      L+    L    ++         P  P       SLT+L +SD+P+L  L S 
Sbjct: 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797

Query: 203 GENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDC 240
            +NL  LE L++ NC  L+        +SL  L +  C
Sbjct: 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 82  PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSL 141
           P  GL  + L  L +     +++LP+ + NL +L +L++               +NL +L
Sbjct: 133 PLIGLLKSNLKELDL-SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191

Query: 142 VVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPAS-LTQLGISDMPTLKCLS 200
            +   KIS       ++  + L EL +       + S       L+ L +S+   L+ L 
Sbjct: 192 DLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLP 248

Query: 201 SVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLME 244
               NL++LETLDLSN  ++   S  G   +L  L +    L  
Sbjct: 249 ESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSN 291

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.26
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.08
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.0
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.87
PRK15386	426	type III secretion protein GogB; Provisional	98.78
PRK15386	426	type III secretion protein GogB; Provisional	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4341	483	consensus F-box protein containing LRR [General fu	98.75
KOG4341	483	consensus F-box protein containing LRR [General fu	98.73
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.51
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.3
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.0
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.96
PLN03150	623	hypothetical protein; Provisional	97.73
PLN03150	623	hypothetical protein; Provisional	97.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.15
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.51

>PLN03210 Resistant to P

Probab=99.85  E-value=2.6e-20  Score=183.62  Aligned_cols=215  Identities=24%  Similarity=0.363  Sum_probs=121.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCCCCCCCCCCccEEEe
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLTI   96 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l   96 (281)
                      ++|+.|+++++..+..+|.+..+++ |+.|++.+|..++.+|..         +++++|..++.+|... .+++|++|++
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            4555555555555555555555555 555555555555554433         5555555555555433 3445555555


Q ss_pred             ccCcccccccc--------------------cC------------------------------cCCCCccEEeecCCcCC
Q 023528           97 WKCKNLKALPN--------------------CI------------------------------HNLTSLLHLEIRECRSL  126 (281)
Q Consensus        97 ~~c~~l~~lp~--------------------~~------------------------------~~l~~L~~L~l~~~~~l  126 (281)
                      ++|..+..+|.                    .+                              ..+++|+.|++++|+.+
T Consensus       712 sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             CCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence            55544333321                    11                              00123333444443333


Q ss_pred             cccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCC
Q 023528          127 VSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGEN  205 (281)
Q Consensus       127 ~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~  205 (281)
                      ..+|.. +.+++|+.|++.+|..++.+|..  ..+++|+.|++++ |..+..+|..+.+++.|++++ +.++.+|.....
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~-c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~  867 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSG-CSRLRTFPDISTNISDLNLSR-TGIEEVPWWIEK  867 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCC-CCccccccccccccCEeECCC-CCCccChHHHhc
Confidence            334432 34455555555555555555431  2455555566655 555555555455666666666 566677744478


Q ss_pred             CCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchHHHH
Q 023528          206 LTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKR  246 (281)
Q Consensus       206 l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~  246 (281)
                      +++|++|++++|+++..++.. ..+++|+.+++.+|..|...
T Consensus       868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            889999999999999988763 33678899999999888643

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.82  E-value=2.5e-19  Score=176.82  Aligned_cols=235  Identities=26%  Similarity=0.353  Sum_probs=171.2

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc--------eee
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER--------IWI   72 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l   72 (281)
                      ++|+.++++++..++.+ |.....++|+.|++++|..+..+|. ++.+++ |+.|++++|..++.+|..        +++
T Consensus       634 ~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGINLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence            45666666666666666 4444445777777777666665554 455666 666666666666665543        445


Q ss_pred             cCCCCCccCC--------------------CCC------------------------------CCCCCccEEEeccCccc
Q 023528           73 FGCPNLESFP--------------------EGG------------------------------LPSTKLTRLTIWKCKNL  102 (281)
Q Consensus        73 ~~~~~l~~l~--------------------~~~------------------------------~~~~~L~~L~l~~c~~l  102 (281)
                      ++|..++.+|                    ...                              ..+++|+.|++++|..+
T Consensus       712 sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             CCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence            5554433332                    110                              01357888889998888


Q ss_pred             ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          103 KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       103 ~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                      ..+|.+++++++|+.|++.+|..++.+|....+++|+.|++++|..+..++.    ..++|+.|++++  +.++.+|.  
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~--n~i~~iP~si  865 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSR--TGIEEVPWWI  865 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc----cccccCEeECCC--CCCccChHHH
Confidence            8899999999999999999999999999877889999999999998877763    246899999998  67778876  


Q ss_pred             -CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCC--------------CCCCcEEecCCCchHH
Q 023528          181 -FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGL--------------PKSLLRLGIDDCPLME  244 (281)
Q Consensus       181 -~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~--------------~~~L~~L~l~~c~~l~  244 (281)
                       ..++|+.|++.+|+.++.+|.....+++|+.+++++|..+..++..+.              .++...+.+.+|.++.
T Consensus       866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence             567999999999999999986568899999999999998876644221              1223445677777664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=6.9e-18  Score=165.19  Aligned_cols=236  Identities=15%  Similarity=0.094  Sum_probs=105.9

Q ss_pred             ccceeecccCCCCCcccCCCCC--ccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc---------e
Q 023528            2 KQDISRSSSGSTSRTPFSSENE--LPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---------I   70 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~---------L   70 (281)
                      ++|+.|+++++.--..+ |...  ..++|++|++++|.....+|. +.+++ |++|++++|...+.+|..         |
T Consensus        93 ~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~-L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCccccccCc-cccCC-CCEEECcCCcccccCChHHhcCCCCCEE
Confidence            45666666665422245 3222  224666666666553223332 34555 555555555433333322         4


Q ss_pred             eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528           71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS  149 (281)
Q Consensus        71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~  149 (281)
                      +++++.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++.....+|.. +.+++|++|++++|...
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            44444433344444444555555555554444444444555555555555443322233322 33444444444443322


Q ss_pred             cccch-----------------------hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC
Q 023528          150 KPLFE-----------------------WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG  203 (281)
Q Consensus       150 ~~~~~-----------------------~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~  203 (281)
                      ...+.                       ..+..+++|++|++++ |.....+|.   ..++|+.|+++++...+.+|..+
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            22222                       1334444455555544 322223332   23345555555533223344222


Q ss_pred             CCCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528          204 ENLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       204 ~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~  241 (281)
                      ..+++|++|++++|.....+|. .+..++|+.|++++|.
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            4555555555555433333332 1223455666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=1.3e-17  Score=163.36  Aligned_cols=235  Identities=16%  Similarity=0.060  Sum_probs=165.0

Q ss_pred             cceeecccCCCCCcc-cCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc-------eee
Q 023528            3 QDISRSSSGSTSRTP-FSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER-------IWI   72 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l   72 (281)
                      ++.+|++++.. +.. +++...-.++|++|++++|.....+|.  +..+.+ |++|+++++...+.+|.+       |++
T Consensus        70 ~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~l~~L~~L~L  147 (968)
T PLN00113         70 RVVSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS-LRYLNLSNNNFTGSIPRGSIPNLETLDL  147 (968)
T ss_pred             cEEEEEecCCC-ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCC-CCEEECcCCccccccCccccCCCCEEEC
Confidence            56778887643 332 312112236999999999874346665  447888 999999998866666654       888


Q ss_pred             cCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccc
Q 023528           73 FGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKP  151 (281)
Q Consensus        73 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~  151 (281)
                      +++.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++.....+|.. +.+++|+.|++++|.....
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence            888666678888888999999999998777788889999999999999987665566654 6789999999999766556


Q ss_pred             cchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-CC
Q 023528          152 LFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK-QG  227 (281)
Q Consensus       152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~-~~  227 (281)
                      ++. .+.++++|++|++++ |.....+|.   ..++|+.|+++++...+.+|..+..+++|++|++++|.....+|. ..
T Consensus       228 ~p~-~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        228 IPY-EIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CCh-hHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            664 688999999999998 544444554   455777777777543345553446666777777776543333333 11


Q ss_pred             CCCCCcEEecCCCc
Q 023528          228 LPKSLLRLGIDDCP  241 (281)
Q Consensus       228 ~~~~L~~L~l~~c~  241 (281)
                      .+++|++|++.+|.
T Consensus       306 ~l~~L~~L~l~~n~  319 (968)
T PLN00113        306 QLQNLEILHLFSNN  319 (968)
T ss_pred             CCCCCcEEECCCCc
Confidence            23455555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=2.7e-12  Score=120.17  Aligned_cols=203  Identities=26%  Similarity=0.309  Sum_probs=95.3

Q ss_pred             eeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCCCC
Q 023528            5 ISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCPNL   78 (281)
Q Consensus         5 ~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~~l   78 (281)
                      ..|+++.+ +++.+ |. .++++|+.|.+.++. ++.+|..  .++ |++|+++++ .+..+|..      |++.++ .+
T Consensus       204 ~~LdLs~~-~LtsL-P~-~l~~~L~~L~L~~N~-Lt~LP~l--p~~-Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N-~L  274 (788)
T PRK15387        204 AVLNVGES-GLTTL-PD-CLPAHITTLVIPDNN-LTSLPAL--PPE-LRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PL  274 (788)
T ss_pred             cEEEcCCC-CCCcC-Cc-chhcCCCEEEccCCc-CCCCCCC--CCC-CcEEEecCC-ccCcccCcccccceeeccCC-ch
Confidence            45566654 56777 43 344577778777654 6666642  344 777777775 34444422      444443 23


Q ss_pred             ccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhc
Q 023528           79 ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLD  158 (281)
Q Consensus        79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  158 (281)
                      ..+|..   .++|+.|++++| .+..+|.   .+++|+.|+++++ .+..+|.  .+.+|+.|.+.+| .++.+|.    
T Consensus       275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~--lp~~L~~L~Ls~N-~L~~LP~----  339 (788)
T PRK15387        275 THLPAL---PSGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPA--LPSELCKLWAYNN-QLTSLPT----  339 (788)
T ss_pred             hhhhhc---hhhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCC--CcccccccccccC-ccccccc----
Confidence            344431   135556666663 3444443   2345666666553 3444432  2334445554442 2233331    


Q ss_pred             cCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecC
Q 023528          159 RFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID  238 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~  238 (281)
                      ...+|+.|++++  +.+..+|..+.+|+.|++++ +.+..+|.   ...+|+.|+++++ .+..+|.  .+++|+.|+++
T Consensus       340 lp~~Lq~LdLS~--N~Ls~LP~lp~~L~~L~Ls~-N~L~~LP~---l~~~L~~LdLs~N-~Lt~LP~--l~s~L~~LdLS  410 (788)
T PRK15387        340 LPSGLQELSVSD--NQLASLPTLPSELYKLWAYN-NRLTSLPA---LPSGLKELIVSGN-RLTSLPV--LPSELKELMVS  410 (788)
T ss_pred             cccccceEecCC--CccCCCCCCCcccceehhhc-cccccCcc---cccccceEEecCC-cccCCCC--cccCCCEEEcc
Confidence            112455555554  34444444344444444444 33444441   1233444444442 3333332  22344444444


Q ss_pred             CC
Q 023528          239 DC  240 (281)
Q Consensus       239 ~c  240 (281)
                      ++
T Consensus       411 ~N  412 (788)
T PRK15387        411 GN  412 (788)
T ss_pred             CC
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.44  E-value=9.2e-15  Score=128.50  Aligned_cols=203  Identities=16%  Similarity=0.228  Sum_probs=111.6

Q ss_pred             CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccCCCCCCC-CCCcc
Q 023528           26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESFPEGGLP-STKLT   92 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l~~~~~~-~~~L~   92 (281)
                      +.|+.||++.+. +..++.  +..-++ +++|+|.++. ++.+..+          +.++. .++..+|.-.++ +++|+
T Consensus       149 ~alrslDLSrN~-is~i~~~sfp~~~n-i~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  149 PALRSLDLSRNL-ISEIPKPSFPAKVN-IKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLE  224 (873)
T ss_pred             hhhhhhhhhhch-hhcccCCCCCCCCC-ceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhhcchhh
Confidence            588888888765 555543  555556 8888888754 4443222          44444 356677765555 88899


Q ss_pred             EEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCCC--CCCCcCeEEecCCCCccccchhhhccCCCcceEEee
Q 023528           93 RLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPEDG--FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR  169 (281)
Q Consensus        93 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  169 (281)
                      .|++..+ .++.+ .-.|.++++|+.+.+.. +.+..+..+.  .+.++++|+++. +.+..+...++.+++.|+.|+++
T Consensus       225 ~LdLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  225 SLDLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhhcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccc
Confidence            9988884 33332 13556777777777765 3455554442  345666666665 44444444455556666666665


Q ss_pred             cCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCC
Q 023528          170 GGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDD  239 (281)
Q Consensus       170 ~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~  239 (281)
                      +  +.+..+..    ..++|+.|+++. +.++++++.. ..+..|++|+++. +.+..+.+..+  .++|++|++..
T Consensus       302 ~--NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  302 Y--NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             h--hhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcC
Confidence            5  34443322    334555555555 4555555333 4444555555554 33444333222  34444444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=5e-12  Score=118.42  Aligned_cols=211  Identities=26%  Similarity=0.331  Sum_probs=126.4

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCC
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCP   76 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~   76 (281)
                      .+..|.+++ ..++.+ |.  .+++|++|++++|. ++.+|..  .++ |+.|++.++. +..+|..      |++.++ 
T Consensus       223 ~L~~L~L~~-N~Lt~L-P~--lp~~Lk~LdLs~N~-LtsLP~l--p~s-L~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N-  292 (788)
T PRK15387        223 HITTLVIPD-NNLTSL-PA--LPPELRTLEVSGNQ-LTSLPVL--PPG-LLELSIFSNP-LTHLPALPSGLCKLWIFGN-  292 (788)
T ss_pred             CCCEEEccC-CcCCCC-CC--CCCCCcEEEecCCc-cCcccCc--ccc-cceeeccCCc-hhhhhhchhhcCEEECcCC-
Confidence            466777776 457888 43  46799999999874 7777752  344 9999888874 4444332      666665 


Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccccccCcC-----------------CCCccEEeecCCcCCcccCCCCCCCCcC
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHN-----------------LTSLLHLEIRECRSLVSFPEDGFPTNLQ  139 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~-----------------l~~L~~L~l~~~~~l~~l~~~~~~~~L~  139 (281)
                      .+..+|..   .++|+.|++++| .+..+|.....                 ..+|++|++++ +.+..+|.  .+++|+
T Consensus       293 ~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~--lp~~L~  365 (788)
T PRK15387        293 QLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPT--LPSELY  365 (788)
T ss_pred             cccccccc---ccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCC--CCcccc
Confidence            45666642   357888888885 45555432111                 12344444444 23333332  233444


Q ss_pred             eEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528          140 SLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK  219 (281)
Q Consensus       140 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  219 (281)
                      .|++++ +.+..+|.    ...+|+.|++++  +.+..+|..+.+|+.|++++ +.+..+|.   .+.+|+.|++++ ++
T Consensus       366 ~L~Ls~-N~L~~LP~----l~~~L~~LdLs~--N~Lt~LP~l~s~L~~LdLS~-N~LssIP~---l~~~L~~L~Ls~-Nq  433 (788)
T PRK15387        366 KLWAYN-NRLTSLPA----LPSGLKELIVSG--NRLTSLPVLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQ  433 (788)
T ss_pred             eehhhc-cccccCcc----cccccceEEecC--CcccCCCCcccCCCEEEccC-CcCCCCCc---chhhhhhhhhcc-Cc
Confidence            444444 22333331    123577777776  45666666566777777777 46777762   234677778877 56


Q ss_pred             cccccCC-CCCCCCcEEecCCCch
Q 023528          220 LKYFSKQ-GLPKSLLRLGIDDCPL  242 (281)
Q Consensus       220 l~~i~~~-~~~~~L~~L~l~~c~~  242 (281)
                      ++.+|.. ..+++|+.|++++++.
T Consensus       434 Lt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        434 LTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ccccChHHhhccCCCeEECCCCCC
Confidence            7777752 2357888888888763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.38  E-value=7.5e-13  Score=116.68  Aligned_cols=211  Identities=17%  Similarity=0.216  Sum_probs=123.8

Q ss_pred             CCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCC-CCCCCCC
Q 023528           22 NELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFP-EGGLPST   89 (281)
Q Consensus        22 ~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~-~~~~~~~   89 (281)
                      +.+|+.-+.|+++++. +..+..  |..+|+ |+++.+..+. +..+|..         |++.++. +.++. .....++
T Consensus        74 g~lp~~t~~LdlsnNk-l~~id~~~f~nl~n-Lq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~  149 (873)
T KOG4194|consen   74 GFLPSQTQTLDLSNNK-LSHIDFEFFYNLPN-LQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALP  149 (873)
T ss_pred             CcCccceeeeeccccc-cccCcHHHHhcCCc-ceeeeeccch-hhhcccccccccceeEEeeeccc-cccccHHHHHhHh
Confidence            4555677777877655 554432  566777 8887777643 5555544         4443321 22221 1222245


Q ss_pred             CccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           90 KLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      .|+.|+++. ..+.++| ..+..=..+++|++++ +.++.+..+  ..+.+|.++.++. +.++.+|...|.++++|+.|
T Consensus       150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhhhhhhh-chhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhh
Confidence            666666666 3445554 2333334566666665 455555443  2345666666665 55666666666666666666


Q ss_pred             EeecCC----------------------CCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCC
Q 023528          167 RIRGGC----------------------PDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPK  219 (281)
Q Consensus       167 ~l~~~~----------------------~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~  219 (281)
                      ++...-                      +.+..+.+    ...++++|++.. +.+..+...| -++++|+.|++++ +.
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-Na  304 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NA  304 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch-hh
Confidence            665400                      22222221    356778888887 6777777666 7888888888888 56


Q ss_pred             cccccCC--CCCCCCcEEecCCCc
Q 023528          220 LKYFSKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       220 l~~i~~~--~~~~~L~~L~l~~c~  241 (281)
                      +..+...  .+.++|+.|++++..
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             hheeecchhhhcccceeEeccccc
Confidence            7766553  347788888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.34  E-value=4.3e-12  Score=119.19  Aligned_cols=213  Identities=21%  Similarity=0.252  Sum_probs=130.8

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecCC
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFGC   75 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~   75 (281)
                      +...|.+++. .++.+ |. .+++.|+.|+++++. +..+|.. ..++ |++|++++|. ++.+|..       +++++|
T Consensus       179 ~~~~L~L~~~-~LtsL-P~-~Ip~~L~~L~Ls~N~-LtsLP~~-l~~n-L~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        179 NKTELRLKIL-GLTTI-PA-CIPEQITTLILDNNE-LKSLPEN-LQGN-IKTLYANSNQ-LTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             CceEEEeCCC-CcCcC-Cc-ccccCCcEEEecCCC-CCcCChh-hccC-CCEEECCCCc-cccCChhhhccccEEECcCC
Confidence            4567777764 57788 53 356799999999875 7777752 2345 9999999865 5555543       566655


Q ss_pred             CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchh
Q 023528           76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                      . +..+|....  ++|++|++++| .+..+|..+.  ++|+.|+++++ .++.+|. ..+++|+.|++++| .++.+|..
T Consensus       252 ~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~  322 (754)
T PRK15370        252 R-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPET  322 (754)
T ss_pred             c-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCcc
Confidence            3 445554433  36777777763 5555665442  46777777764 4555543 23456677777663 34444421


Q ss_pred             hhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcE
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLR  234 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~  234 (281)
                         ..++|+.|++++  +.++.+|. .+++|+.|++++ +.+..+|...  .++|++|++++| .+..+|.. ++.+|+.
T Consensus       323 ---l~~sL~~L~Ls~--N~Lt~LP~~l~~sL~~L~Ls~-N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~  392 (754)
T PRK15370        323 ---LPPGLKTLEAGE--NALTSLPASLPPELQVLDVSK-NQITVLPETL--PPTITTLDVSRN-ALTNLPEN-LPAALQI  392 (754)
T ss_pred             ---ccccceeccccC--CccccCChhhcCcccEEECCC-CCCCcCChhh--cCCcCEEECCCC-cCCCCCHh-HHHHHHH
Confidence               235677777776  34555665 556777777777 4566666322  246777777774 45566542 2345677


Q ss_pred             EecCCCc
Q 023528          235 LGIDDCP  241 (281)
Q Consensus       235 L~l~~c~  241 (281)
                      |++.++.
T Consensus       393 LdLs~N~  399 (754)
T PRK15370        393 MQASRNN  399 (754)
T ss_pred             HhhccCC
Confidence            7776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=1.3e-11  Score=115.91  Aligned_cols=216  Identities=20%  Similarity=0.316  Sum_probs=156.9

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG   74 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~   74 (281)
                      +.+..|.++++ .++.+ |... +++|+.|++++|. +..+|.  .++.+|+.|++++|. +..+|..       |++++
T Consensus       199 ~~L~~L~Ls~N-~LtsL-P~~l-~~nL~~L~Ls~N~-LtsLP~--~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        199 EQITTLILDNN-ELKSL-PENL-QGNIKTLYANSNQ-LTSIPA--TLPDTIQEMELSINR-ITELPERLPSALQSLDLFH  271 (754)
T ss_pred             cCCcEEEecCC-CCCcC-Chhh-ccCCCEEECCCCc-cccCCh--hhhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence            35677888875 58888 5443 3599999999876 777775  244449999999986 5566543       77775


Q ss_pred             CCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch
Q 023528           75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE  154 (281)
Q Consensus        75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~  154 (281)
                      + .+..+|..+.  ++|+.|++++| .+..+|..+.  ++|++|+++++ .+..+|. ..+++|+.|.+++| .++.+|.
T Consensus       272 N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N-~Lt~LP~  342 (754)
T PRK15370        272 N-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKTLEAGEN-ALTSLPA  342 (754)
T ss_pred             C-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc-cccccceeccccCC-ccccCCh
Confidence            4 6777876554  48999999996 5667775543  57889999884 5566654 34579999999985 4555664


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-----CC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-----GL  228 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-----~~  228 (281)
                       .+  .++|+.|++++  +.+..+|. .+++|+.|++++ +.+..+|....  .+|+.|++++ +++..+|..     +.
T Consensus       343 -~l--~~sL~~L~Ls~--N~L~~LP~~lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~  413 (754)
T PRK15370        343 -SL--PPELQVLDVSK--NQITVLPETLPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGE  413 (754)
T ss_pred             -hh--cCcccEEECCC--CCCCcCChhhcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhc
Confidence             22  36899999998  46777776 667999999999 57888885432  3689999999 467777652     12


Q ss_pred             CCCCcEEecCCCch
Q 023528          229 PKSLLRLGIDDCPL  242 (281)
Q Consensus       229 ~~~L~~L~l~~c~~  242 (281)
                      .+.+..+++.+.+.
T Consensus       414 ~~~l~~L~L~~Npl  427 (754)
T PRK15370        414 GPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCccEEEeeCCCc
Confidence            46788899988874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.27  E-value=2.4e-13  Score=120.88  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             CCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhcc
Q 023528           81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDR  159 (281)
Q Consensus        81 l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~  159 (281)
                      +|.++-.+.||..++++. ..+..+|..+-.+++|+.|++++ +.++.+... +.-.+|++|+++. +.++.+|. .+.+
T Consensus       214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~-avcK  289 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPD-AVCK  289 (1255)
T ss_pred             CCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchH-HHhh
Confidence            444444455555555555 34444455555555555555554 233333222 1223444444444 33344433 2334


Q ss_pred             CCCcceEEee
Q 023528          160 FACLRELRIR  169 (281)
Q Consensus       160 l~~L~~L~l~  169 (281)
                      ++.|+.|.+.
T Consensus       290 L~kL~kLy~n  299 (1255)
T KOG0444|consen  290 LTKLTKLYAN  299 (1255)
T ss_pred             hHHHHHHHhc
Confidence            4444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.26  E-value=2.4e-13  Score=114.81  Aligned_cols=115  Identities=22%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc----------e
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER----------I   70 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~----------L   70 (281)
                      ||+++.++.+. .-++.+||.-....+|.-|+++.+. +..+|.|++... |++|+++.+. ++.+|+.          +
T Consensus       182 m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~-L~Elh~g~N~-i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSL-LKELHVGENQ-IEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHH-HHHHHhcccH-HHhhHHHHhcccccceee
Confidence            45555555554 2355666655555677777777655 556666655555 6666655432 3333322          5


Q ss_pred             eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecC
Q 023528           71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRE  122 (281)
Q Consensus        71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~  122 (281)
                      ++..+ +++.+|..++.+.+|++|++++ ..++.+|..++++ +|+.|.+.|
T Consensus       258 DLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  258 DLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             ecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcC
Confidence            55553 5666777766666777777776 4566666666666 666665554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.15  E-value=3.3e-13  Score=114.02  Aligned_cols=133  Identities=26%  Similarity=0.289  Sum_probs=81.0

Q ss_pred             CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhh
Q 023528           78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGL  157 (281)
Q Consensus        78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~  157 (281)
                      ++.+|.....++.|++|+... ..++.+|+.++.+.+|+-|++.. ..+..+|++..++.|..+++.. +.+..++....
T Consensus       172 l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~  248 (565)
T KOG0472|consen  172 LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL  248 (565)
T ss_pred             hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc-cHHHhhHHHHh
Confidence            334444333355566665555 34566666666666666666665 4556666655666666666654 55566666666


Q ss_pred             ccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528          158 DRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  217 (281)
                      .+++++..||+.+  +.++++|.   ...+|.+||+++ +.+..+|.+.+++ +|+.|-+.|+
T Consensus       249 ~~L~~l~vLDLRd--Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  249 KHLNSLLVLDLRD--NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             cccccceeeeccc--cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence            6677777777776  56666665   455666777776 5666666555655 6666666663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.11  E-value=2.5e-12  Score=114.50  Aligned_cols=213  Identities=20%  Similarity=0.232  Sum_probs=151.4

Q ss_pred             ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc-------------------------CCCcCCcCcE
Q 023528            2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW-------------------------NGNLPRALKY   54 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~-------------------------~~~l~~~L~~   54 (281)
                      |.++-|++++ .++..+ |..-+.  +.|-.|+++.+. ++.+|+                         +.+++. |++
T Consensus       126 Kn~iVLNLS~-N~IetI-Pn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~v  201 (1255)
T KOG0444|consen  126 KNSIVLNLSY-NNIETI-PNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSV  201 (1255)
T ss_pred             cCcEEEEccc-CccccC-CchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhh
Confidence            4566677775 456667 433332  445556666554 555554                         233444 555


Q ss_pred             EEecCCcc-hhccccc---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCc
Q 023528           55 LYVKDCSK-LESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR  124 (281)
Q Consensus        55 L~l~~~~~-l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~  124 (281)
                      |++++.+. +..+|.+         ++++. .++..+|....++++|+.|++++ ..++++....+...+|+.|+++. +
T Consensus       202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-N  278 (1255)
T KOG0444|consen  202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-N  278 (1255)
T ss_pred             hhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-c
Confidence            55555432 2334444         55554 56788899999999999999999 56777766777788999999998 5


Q ss_pred             CCcccCCC-CCCCCcCeEEecCCCCc-cccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccc
Q 023528          125 SLVSFPED-GFPTNLQSLVVDDLKIS-KPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCL  199 (281)
Q Consensus       125 ~l~~l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l  199 (281)
                      .++.+|.. ..++.|+.|...+|... .-+|+ +++++.+|+.+..++  +.+.-+|+   -+..|+.|.+.+ +.+-.+
T Consensus       279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~-NrLiTL  354 (1255)
T KOG0444|consen  279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDH-NRLITL  354 (1255)
T ss_pred             hhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccc-cceeec
Confidence            78888865 68889999988875433 55665 788999999988887  67777887   456789999987 678788


Q ss_pred             cccCCCCCCcCEEeccCCCCcccccC
Q 023528          200 SSVGENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       200 ~~~~~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                      |..+.-++.|+.|++..++++..-|.
T Consensus       355 PeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  355 PEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhhhhcCCcceeeccCCcCccCCCC
Confidence            85557778899999999888765554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.08  E-value=7.8e-12  Score=115.44  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      .+|+.|++++ +.+..+|...+.++..|++|++++  +.++.+|.   .+..|++|.... +.+..+| +...+++|+.+
T Consensus       383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVL  457 (1081)
T ss_pred             cceeeeeecc-cccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEE
Confidence            4555555555 444445544455555555555555  44444444   333455555544 4555555 44555666666


Q ss_pred             eccCCCCcccccC-CCCC-CCCcEEecCCCc
Q 023528          213 DLSNCPKLKYFSK-QGLP-KSLLRLGIDDCP  241 (281)
Q Consensus       213 ~l~~c~~l~~i~~-~~~~-~~L~~L~l~~c~  241 (281)
                      |++. ++++.+.. ...+ ++|++|++++..
T Consensus       458 DlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  458 DLSC-NNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             eccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence            6654 45555433 2234 566666666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.00  E-value=9.3e-12  Score=94.01  Aligned_cols=151  Identities=23%  Similarity=0.303  Sum_probs=81.1

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA  104 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  104 (281)
                      +.+..|.++++. +..+|+ ++.+.+ |+.|++.++                .++.+|..+..+++|+.|++.- ..+..
T Consensus        33 s~ITrLtLSHNK-l~~vppnia~l~n-levln~~nn----------------qie~lp~~issl~klr~lnvgm-nrl~~   93 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LTVVPPNIAELKN-LEVLNLSNN----------------QIEELPTSISSLPKLRILNVGM-NRLNI   93 (264)
T ss_pred             hhhhhhhcccCc-eeecCCcHHHhhh-hhhhhcccc----------------hhhhcChhhhhchhhhheecch-hhhhc
Confidence            566677777665 444433 666666 777777653                2445555555566777777665 44555


Q ss_pred             ccccCcCCCCccEEeecCCcCC-cccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          105 LPNCIHNLTSLLHLEIRECRSL-VSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       105 lp~~~~~l~~L~~L~l~~~~~l-~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                      +|.+|+.++.|+.|++.+...- ..+|.. .++..|+.|.+++ +.+..+|. .++++++|+.|.+.+  +.+-++|.  
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~-dvg~lt~lqil~lrd--ndll~lpkei  169 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPP-DVGKLTNLQILSLRD--NDLLSLPKEI  169 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCCh-hhhhhcceeEEeecc--CchhhCcHHH
Confidence            6777777777777777653221 123322 2334555555555 33444443 355555555555555  33333333  


Q ss_pred             -CCCCccEEeccCCCCCcccc
Q 023528          181 -FPASLTQLGISDMPTLKCLS  200 (281)
Q Consensus       181 -~~~~L~~L~l~~c~~l~~l~  200 (281)
                       ..++|++|.+.+ +.++.+|
T Consensus       170 g~lt~lrelhiqg-nrl~vlp  189 (264)
T KOG0617|consen  170 GDLTRLRELHIQG-NRLTVLP  189 (264)
T ss_pred             HHHHHHHHHhccc-ceeeecC
Confidence             233444555544 3444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.00  E-value=9.4e-12  Score=93.99  Aligned_cols=144  Identities=21%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccch
Q 023528           76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFE  154 (281)
Q Consensus        76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~  154 (281)
                      .++..+|..+..+.+|+.|++.+ ..++.+|.++.+++.|++|+++- ..+..+|.+ +.++.|+.|++.+++-......
T Consensus        43 NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lp  120 (264)
T KOG0617|consen   43 NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLP  120 (264)
T ss_pred             CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCC
Confidence            46778888888899999999998 67889999999999999999974 567777765 7889999999999776644333


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                      ..|..++.|+.|.+++  +..+-+|.   ..++|+.|.+.+ +.+-++|.+.+.+..|++|.+.+ +.++.+|.
T Consensus       121 gnff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp  190 (264)
T KOG0617|consen  121 GNFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP  190 (264)
T ss_pred             cchhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence            4677888899999998  66666665   678899999999 78888887778999999999999 55655543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-10  Score=107.54  Aligned_cols=184  Identities=21%  Similarity=0.208  Sum_probs=110.3

Q ss_pred             CcCceeeccCCcCccccccCCC-cCCcCcEEEecCCcchhccccc-----------eeecCCCCCccCCCCC-CCCCCcc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGN-LPRALKYLYVKDCSKLESLAER-----------IWIFGCPNLESFPEGG-LPSTKLT   92 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~-l~~~L~~L~l~~~~~l~~~p~~-----------L~l~~~~~l~~l~~~~-~~~~~L~   92 (281)
                      ++|+.|.+..|. +..+|.+.. +.. |+.|++..+. ++.+|+.           +..+ +.++..+|... ...+.|+
T Consensus       287 ~~L~~l~~~~ne-l~yip~~le~~~s-L~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  287 TSLVSLSAAYNE-LEYIPPFLEGLKS-LRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhHHHHHhhhhh-hhhCCCcccccce-eeeeeehhcc-ccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHH
Confidence            566666666655 666666544 777 8888888754 6666554           1111 22333333221 2244677


Q ss_pred             EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528           93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus        93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      .|.+.++..-...-+.+....+|+.|++++ +.+..+|..  ..+..|+.|+++| +.++.++. .+..+..|++|...+
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~-tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPD-TVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhH-HHHhhhhhHHHhhcC
Confidence            777777543333323456677777777777 566677655  4566777777777 56666663 566777777777666


Q ss_pred             CCCCCccCCC--CCCCccEEeccCCCCCccccccCCCC-CCcCEEeccCCCC
Q 023528          171 GCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENL-TSLETLDLSNCPK  219 (281)
Q Consensus       171 ~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~  219 (281)
                        +.+..+|+  ..+.|+.+|++. ++++.+-...... ++|++|+++|+.+
T Consensus       440 --N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 --NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             --CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence              56666776  455777777776 5665432111111 6777777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.78  E-value=4e-08  Score=85.47  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=47.4

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER   69 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~   69 (281)
                      +++..|.+++| .++.+ |  .+|++|++|.+++|..++.+|.  .+|.+|++|.+++|..+..+|.+
T Consensus        52 ~~l~~L~Is~c-~L~sL-P--~LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         52 RASGRLYIKDC-DIESL-P--VLPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             cCCCEEEeCCC-CCccc-C--CCCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccccc
Confidence            56778888887 68888 5  5778899999998888877774  35555888888888766666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.77  E-value=5.4e-08  Score=84.68  Aligned_cols=139  Identities=24%  Similarity=0.353  Sum_probs=92.7

Q ss_pred             CCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCC--CccccchhhhccCCCcceE
Q 023528           89 TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLK--ISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L  166 (281)
                      ++|+.|.+++|..+..+|..+  ..+|++|.+++|..+..+     +++|++|.+.++.  .+..+|       ++|+.|
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~LP-------ssLk~L  137 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKNVP-------NGLTSL  137 (426)
T ss_pred             CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCcccccCc-------chHhhe
Confidence            379999999999998888655  468999999998766654     4578888887532  223333       367888


Q ss_pred             EeecCCCCC--ccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCc-ccccCCCCCCCCcEEecCCCch
Q 023528          167 RIRGGCPDL--VSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL-KYFSKQGLPKSLLRLGIDDCPL  242 (281)
Q Consensus       167 ~l~~~~~~~--~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~L~~L~l~~c~~  242 (281)
                      .+.+ +...  ...+. +|.+|++|++.+|..+ .+|..  -..+|++|.++.+... -.++...+++++ .|++.+|..
T Consensus       138 ~I~~-~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk  212 (426)
T PRK15386        138 SINS-YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK--LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL  212 (426)
T ss_pred             eccc-cccccccccccccCCcccEEEecCCCcc-cCccc--ccccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence            8764 2211  22232 6789999999998644 33421  2258899998764311 123444566778 899999876


Q ss_pred             HHHH
Q 023528          243 MEKR  246 (281)
Q Consensus       243 l~~~  246 (281)
                      +...
T Consensus       213 L~~~  216 (426)
T PRK15386        213 LSPD  216 (426)
T ss_pred             cCHH
Confidence            6543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=5.8e-09  Score=99.89  Aligned_cols=205  Identities=21%  Similarity=0.196  Sum_probs=122.2

Q ss_pred             CcCceeeccCCcC-cccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccc
Q 023528           26 ATLEHLEVTHCSN-LAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL  102 (281)
Q Consensus        26 ~~L~~L~l~~~~~-l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  102 (281)
                      +.|+.|-+.++.. +..++.  |..+|. |++|++++|               ..+..+|..+..+-+|++|++++ +.+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~-LrVLDLs~~---------------~~l~~LP~~I~~Li~LryL~L~~-t~I  607 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPL-LRVLDLSGN---------------SSLSKLPSSIGELVHLRYLDLSD-TGI  607 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcc-eEEEECCCC---------------CccCcCChHHhhhhhhhcccccC-CCc
Confidence            4677776666542 444444  566777 777777664               45566666666667888888888 677


Q ss_pred             ccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCC-CccccchhhhccCCCcceEEeecCCCC------
Q 023528          103 KALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLK-ISKPLFEWGLDRFACLRELRIRGGCPD------  174 (281)
Q Consensus       103 ~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~------  174 (281)
                      ..+|.+++.++.|.+|++.....+..++.. ..+++|++|.+.... ..+...-..+..+.+|+.+.+.. +..      
T Consensus       608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~-~s~~~~e~l  686 (889)
T KOG4658|consen  608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI-SSVLLLEDL  686 (889)
T ss_pred             cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec-chhHhHhhh
Confidence            788888888888888888776555555443 347788888777643 22222222345555565555543 211      


Q ss_pred             --------------------CccCCC--CCCCccEEeccCCCCCccccccC------CC-CCCcCEEeccCCCCcccccC
Q 023528          175 --------------------LVSSPR--FPASLTQLGISDMPTLKCLSSVG------EN-LTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       175 --------------------~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~------~~-l~~L~~L~l~~c~~l~~i~~  225 (281)
                                          .+....  ...+|+.|.+.+|+..+... .+      .. ++++..+.+.+|...+....
T Consensus       687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~  765 (889)
T KOG4658|consen  687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTW  765 (889)
T ss_pred             hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccch
Confidence                                000000  34567777777765432211 11      11 33455555556655555544


Q ss_pred             CCCCCCCcEEecCCCchHHHHHhh
Q 023528          226 QGLPKSLLRLGIDDCPLMEKRWIK  249 (281)
Q Consensus       226 ~~~~~~L~~L~l~~c~~l~~~~~~  249 (281)
                      ..++++|+.|++..|+.++.....
T Consensus       766 ~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  766 LLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             hhccCcccEEEEecccccccCCCH
Confidence            445788999999999877665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.75  E-value=1.6e-10  Score=98.41  Aligned_cols=241  Identities=21%  Similarity=0.236  Sum_probs=126.1

Q ss_pred             cceeecccCCCCCcccCCCCCcc---CcCceeeccCCcCcccccc--CCC-cCCcCcEEEecCCcchhccc-----cc--
Q 023528            3 QDISRSSSGSTSRTPFSSENELP---ATLEHLEVTHCSNLAFLSW--NGN-LPRALKYLYVKDCSKLESLA-----ER--   69 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~--~~~-l~~~L~~L~l~~~~~l~~~p-----~~--   69 (281)
                      .+++|++.||..++.- +...+.   +++++|.+.+|.+++....  ++. .++ |+++.+..|..+....     ++  
T Consensus       139 ~lk~LSlrG~r~v~~s-slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~-l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDS-SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRK-LRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcc-hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcch-hhhhhhcccchhHHHHHHHHHHhhh
Confidence            4678888888876644 333332   7888888888886663322  333 344 7777777776554421     11  


Q ss_pred             ----eeecCCCCCcc--CCCCCCCCCCccEEEeccCccccc--ccc----------------------cC----cCCCCc
Q 023528           70 ----IWIFGCPNLES--FPEGGLPSTKLTRLTIWKCKNLKA--LPN----------------------CI----HNLTSL  115 (281)
Q Consensus        70 ----L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~--lp~----------------------~~----~~l~~L  115 (281)
                          +.+++|+.+..  +..-...++.++.+...||..++.  +-.                      .+    ..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence                44444443332  111111133444554455543211  000                      00    124445


Q ss_pred             cEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhh-ccCCCcceEEeecCCCCCccCC-----CCCCCcc
Q 023528          116 LHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGL-DRFACLRELRIRGGCPDLVSSP-----RFPASLT  186 (281)
Q Consensus       116 ~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~  186 (281)
                      +.+..++|..+...+..   ....+|+.+.++.|..+++.....+ .+++.|+.+++.. |..+.+-.     ...+.|+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~-~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE-CGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc-cceehhhhHhhhccCCchhc
Confidence            55555555444333221   3456677777777666544432222 2455666666666 54443321     1455677


Q ss_pred             EEeccCCCCCccc-----cccCCCCCCcCEEeccCCCCcccccC--CCCCCCCcEEecCCCchHHHH
Q 023528          187 QLGISDMPTLKCL-----SSVGENLTSLETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDCPLMEKR  246 (281)
Q Consensus       187 ~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~  246 (281)
                      .+.+++|..+++-     .....+...++.+.+++|+.+.+...  ...+++|+.+++.+|....+.
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence            7777777655543     21114555677777777776655332  123567777777777755443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.73  E-value=2.2e-10  Score=97.55  Aligned_cols=217  Identities=18%  Similarity=0.287  Sum_probs=113.0

Q ss_pred             CcCceeeccCCcCcccccc---CCCcCCcCcEEEecCCcchhccccc-----------eeecCCCCCccCCC--CCCCCC
Q 023528           26 ATLEHLEVTHCSNLAFLSW---NGNLPRALKYLYVKDCSKLESLAER-----------IWIFGCPNLESFPE--GGLPST   89 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~---~~~l~~~L~~L~l~~~~~l~~~p~~-----------L~l~~~~~l~~l~~--~~~~~~   89 (281)
                      .-||.|.+++|.....-+.   ....|+ +++|.+.+|..+.+....           +++..|..++...-  ....++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPN-IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCc-hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            4789999999987654332   345677 999999999866543211           55555554443221  223378


Q ss_pred             CccEEEeccCccccc--ccccCcCCCCccEEeecCCcCCcc--cC-CCCCCCCcCeEEecCCCCccccc-----------
Q 023528           90 KLTRLTIWKCKNLKA--LPNCIHNLTSLLHLEIRECRSLVS--FP-EDGFPTNLQSLVVDDLKISKPLF-----------  153 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~--l~-~~~~~~~L~~L~l~~~~~~~~~~-----------  153 (281)
                      +|++++++.|+.+..  +-.-...+..++.+...||.....  +. ..+....+..+++..|+.+++..           
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            999999999987654  111223555666666666643321  10 01233334444444444443332           


Q ss_pred             ---------------hhhh-ccCCCcceEEeecCCCCCccCCC-----CCCCccEEeccCCCCCcc--ccccC-CCCCCc
Q 023528          154 ---------------EWGL-DRFACLRELRIRGGCPDLVSSPR-----FPASLTQLGISDMPTLKC--LSSVG-ENLTSL  209 (281)
Q Consensus       154 ---------------~~~~-~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~c~~l~~--l~~~~-~~l~~L  209 (281)
                                     ...+ ++.++|+.+.++. |...++...     ..+.|+.+++.+|..+.+  +. +. .+++.|
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~~l  374 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCPRL  374 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccc-cchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhccCCchh
Confidence                           1111 2344555555554 444333222     334455555555433222  11 11 456666


Q ss_pred             CEEeccCCCCcccccCCC------CCCCCcEEecCCCchHHH
Q 023528          210 ETLDLSNCPKLKYFSKQG------LPKSLLRLGIDDCPLMEK  245 (281)
Q Consensus       210 ~~L~l~~c~~l~~i~~~~------~~~~L~~L~l~~c~~l~~  245 (281)
                      +.+.++.|..+++.....      -...++.+.+++|+...+
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence            666666665554431100      024566777777775554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.70  E-value=1.1e-09  Score=92.72  Aligned_cols=90  Identities=19%  Similarity=0.152  Sum_probs=66.7

Q ss_pred             CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCc
Q 023528          146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKL  220 (281)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l  220 (281)
                      |......|..-|..+++|++|++++  +.++.+.+    ....+++|.+.. ++++.+...+ .++..|+.|++.+ +++
T Consensus       259 d~~d~~cP~~cf~~L~~L~~lnlsn--N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~i  334 (498)
T KOG4237|consen  259 DFPDSICPAKCFKKLPNLRKLNLSN--NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQI  334 (498)
T ss_pred             cCcCCcChHHHHhhcccceEeccCC--CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-Cee
Confidence            3444556666788999999999998  67777654    456788888888 7888887555 8888999999998 677


Q ss_pred             ccccCCCC--CCCCcEEecCC
Q 023528          221 KYFSKQGL--PKSLLRLGIDD  239 (281)
Q Consensus       221 ~~i~~~~~--~~~L~~L~l~~  239 (281)
                      +.+....+  ..+|..|.+..
T Consensus       335 t~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  335 TTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             EEEecccccccceeeeeehcc
Confidence            77766444  45677776644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.62  E-value=3.1e-09  Score=91.25  Aligned_cols=32  Identities=25%  Similarity=0.172  Sum_probs=15.7

Q ss_pred             cCceeeccCCcCcc-----ccc-cCCCcCCcCcEEEecCC
Q 023528           27 TLEHLEVTHCSNLA-----FLS-WNGNLPRALKYLYVKDC   60 (281)
Q Consensus        27 ~L~~L~l~~~~~l~-----~l~-~~~~l~~~L~~L~l~~~   60 (281)
                      +|++|++++|. ++     .++ .+...+. +++++++++
T Consensus        24 ~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~-l~~l~l~~~   61 (319)
T cd00116          24 CLQVLRLEGNT-LGEEAAKALASALRPQPS-LKELCLSLN   61 (319)
T ss_pred             hccEEeecCCC-CcHHHHHHHHHHHhhCCC-ceEEecccc
Confidence            46666666654 21     111 1334455 666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.51  E-value=1.5e-08  Score=86.96  Aligned_cols=248  Identities=18%  Similarity=0.072  Sum_probs=135.1

Q ss_pred             ccceeecccCCCCC-----cccCCCCCccCcCceeeccCCcCccc-------c-ccCCCcCCcCcEEEecCCcchhcccc
Q 023528            2 KQDISRSSSGSTSR-----TPFSSENELPATLEHLEVTHCSNLAF-------L-SWNGNLPRALKYLYVKDCSKLESLAE   68 (281)
Q Consensus         2 ~~l~~l~~~~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~~-------l-~~~~~l~~~L~~L~l~~~~~l~~~p~   68 (281)
                      .+++.+.+.++. +     ..++......++++.++++++.. ..       + ..++.+++ |++|++++|......+ 
T Consensus        23 ~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~-   98 (319)
T cd00116          23 LCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCG-LQELDLSDNALGPDGC-   98 (319)
T ss_pred             hhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCc-eeEEEccCCCCChhHH-
Confidence            346777787765 3     22311112225688998887652 21       1 11555778 9999998876322211 


Q ss_pred             ceeecCCCCCccCCCCCCCCCCccEEEeccCccc----ccccccCcCC-CCccEEeecCCcCCc----ccCC-CCCCCCc
Q 023528           69 RIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL----KALPNCIHNL-TSLLHLEIRECRSLV----SFPE-DGFPTNL  138 (281)
Q Consensus        69 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l----~~lp~~~~~l-~~L~~L~l~~~~~l~----~l~~-~~~~~~L  138 (281)
                             ..+..+..   . ++|++|++++|...    ..+...+..+ ++|+.+++++|....    .+.. ....++|
T Consensus        99 -------~~~~~l~~---~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L  167 (319)
T cd00116          99 -------GVLESLLR---S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL  167 (319)
T ss_pred             -------HHHHHHhc---c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence                   11112221   1 46999999887533    1223344556 888999998864331    1111 1344688


Q ss_pred             CeEEecCCCCccccc---hhhhccCCCcceEEeecCCCCCccC-----CC---CCCCccEEeccCCCCCccc-----ccc
Q 023528          139 QSLVVDDLKISKPLF---EWGLDRFACLRELRIRGGCPDLVSS-----PR---FPASLTQLGISDMPTLKCL-----SSV  202 (281)
Q Consensus       139 ~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~-----~~---~~~~L~~L~l~~c~~l~~l-----~~~  202 (281)
                      ++|++.+|.......   ...+...++|++|++++ |. ++..     ..   ..++|++|++++| .++..     ...
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~  244 (319)
T cd00116         168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-NG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASA  244 (319)
T ss_pred             CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-Cc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHH
Confidence            999998865432111   11244556899999987 53 3211     11   3457999999985 45431     101


Q ss_pred             C-CCCCCcCEEeccCCCCccc-----ccC-CCCCCCCcEEecCCCchHHHHHhhcCCCCCccccccccc-ccccEEEECC
Q 023528          203 G-ENLTSLETLDLSNCPKLKY-----FSK-QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMI-THIPCVIVNG  274 (281)
Q Consensus       203 ~-~~l~~L~~L~l~~c~~l~~-----i~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~  274 (281)
                      . ...+.|++|++++|. +++     +.. ....+.|++++++++..-.+..... .      ..+... .++..+++.+
T Consensus       245 ~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~-~------~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         245 LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL-A------ESLLEPGNELESLWVKD  316 (319)
T ss_pred             HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH-H------HHHhhcCCchhhcccCC
Confidence            1 224788999998874 321     111 1113678899988877443321110 0      223434 4666666665


Q ss_pred             E
Q 023528          275 R  275 (281)
Q Consensus       275 ~  275 (281)
                      .
T Consensus       317 ~  317 (319)
T cd00116         317 D  317 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.47  E-value=1.9e-07  Score=89.66  Aligned_cols=172  Identities=24%  Similarity=0.235  Sum_probs=101.4

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCCCCCCCCCCccEEE
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLT   95 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~   95 (281)
                      +.|++||+++|..+..+|. ++.+-+ ||+|+++++. ++.+|.+         |++.....+..++.....+++|++|.
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~-LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVH-LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhh-hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            7999999999999999987 888999 9999999965 7777776         66666666666655555577888888


Q ss_pred             eccCc-ccc-cccccCcCCCCccEEeecCCcC--------------------------CcccCCCCCCCCcCeEEecCCC
Q 023528           96 IWKCK-NLK-ALPNCIHNLTSLLHLEIRECRS--------------------------LVSFPEDGFPTNLQSLVVDDLK  147 (281)
Q Consensus        96 l~~c~-~l~-~lp~~~~~l~~L~~L~l~~~~~--------------------------l~~l~~~~~~~~L~~L~l~~~~  147 (281)
                      +..-. ... ..-..+..+.+|+.+....++.                          .+.......+.+|+.|.+.+|.
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~  728 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCG  728 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCC
Confidence            76522 100 0112334555555555543222                          0001111345666667766665


Q ss_pred             Cccccc----hhhhcc-CCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528          148 ISKPLF----EWGLDR-FACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS  200 (281)
Q Consensus       148 ~~~~~~----~~~~~~-l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~  200 (281)
                      ..+...    ...... ++++..+.+.. |....+...  .+++|+.|.+..|..++.+.
T Consensus       729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  729 ISEIVIEWEESLIVLLCFPNLSKVSILN-CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             CchhhcccccccchhhhHHHHHHHHhhc-cccccccchhhccCcccEEEEecccccccCC
Confidence            532211    000111 33444444444 444444332  56678888888877666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.46  E-value=7.9e-09  Score=87.70  Aligned_cols=222  Identities=17%  Similarity=0.166  Sum_probs=123.9

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES   80 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~   80 (281)
                      .+++++ | ..+|+....+.+..+. +..+|+  |+.+++ ||.|+|+.+. +..|..+          +.+-+..+++.
T Consensus        56 ~GL~eV-P-~~LP~~tveirLdqN~-I~~iP~~aF~~l~~-LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   56 KGLTEV-P-ANLPPETVEIRLDQNQ-ISSIPPGAFKTLHR-LRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CCcccC-c-ccCCCcceEEEeccCC-cccCChhhccchhh-hceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            456777 5 3467788888888765 888887  888999 9999998864 5444221          33334445566


Q ss_pred             CCCCC-CCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcccc--c--
Q 023528           81 FPEGG-LPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPL--F--  153 (281)
Q Consensus        81 l~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~--~--  153 (281)
                      +|... ..+..|+.|.+.-|.--......+..++++..|.+.. +.+..++..  ..+.+++++.+..+....+.  +  
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchh
Confidence            65432 2345556655555322121224455666666666655 344444443  22345555555544321110  0  


Q ss_pred             -------hhhhccCC-----CcceEEe-------------------ecCCCCCccCCC----CCCCccEEeccCCCCCcc
Q 023528          154 -------EWGLDRFA-----CLRELRI-------------------RGGCPDLVSSPR----FPASLTQLGISDMPTLKC  198 (281)
Q Consensus       154 -------~~~~~~l~-----~L~~L~l-------------------~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~  198 (281)
                             ...++.+.     .+.+-.+                   ...|.-...-|.    ..++|++|++++ ++++.
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~  288 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITR  288 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccch
Confidence                   00011100     0000000                   000100011111    356888999998 78888


Q ss_pred             ccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCCCch
Q 023528          199 LSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCPL  242 (281)
Q Consensus       199 l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~~  242 (281)
                      |...+ ..+.++++|.+.. +++..+....+  ++.|+.|++.+...
T Consensus       289 i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             hhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCee
Confidence            87666 8888899999988 67777766443  57888888887653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=9.2e-08  Score=82.27  Aligned_cols=153  Identities=19%  Similarity=0.227  Sum_probs=99.7

Q ss_pred             CCCCCccEEEeccCccccccc--ccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhccC
Q 023528           86 LPSTKLTRLTIWKCKNLKALP--NCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDRF  160 (281)
Q Consensus        86 ~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l  160 (281)
                      ..|++++.|+++.+-.-.+.|  .-...+++|+.|+++. +.+......   ..++.|+.|.++.|+.........+..+
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            347789999998843322222  2236789999999986 334333222   4678899999999887633333356778


Q ss_pred             CCcceEEeecCCCCCc--cCCC-CCCCccEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccccC--C------C
Q 023528          161 ACLRELRIRGGCPDLV--SSPR-FPASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYFSK--Q------G  227 (281)
Q Consensus       161 ~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i~~--~------~  227 (281)
                      |+|+.|.+.. +..+.  ..+. .+..|+.|+|++ +.+-.++.  ..+.++.|..|+++.| .+.++..  .      .
T Consensus       222 Psl~~L~L~~-N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  222 PSLEVLYLEA-NEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTH  298 (505)
T ss_pred             CcHHHhhhhc-ccccceecchhhhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCCCccchhhhc
Confidence            8999999987 43322  2222 667899999999 45555541  2278888888888874 4554432  1      2


Q ss_pred             CCCCCcEEecCCCch
Q 023528          228 LPKSLLRLGIDDCPL  242 (281)
Q Consensus       228 ~~~~L~~L~l~~c~~  242 (281)
                      .+++|++|++...+.
T Consensus       299 ~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  299 TFPKLEYLNISENNI  313 (505)
T ss_pred             ccccceeeecccCcc
Confidence            367889998887664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.39  E-value=2.9e-07  Score=71.51  Aligned_cols=124  Identities=17%  Similarity=0.273  Sum_probs=38.5

Q ss_pred             CcCceeeccCCcCccccccCC-CcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNG-NLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA  104 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~-~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  104 (281)
                      ..+++|+++++. +..+..++ .+.+ |+.|++++|. ++.            +..++    .+++|+.|++++ ..++.
T Consensus        19 ~~~~~L~L~~n~-I~~Ie~L~~~l~~-L~~L~Ls~N~-I~~------------l~~l~----~L~~L~~L~L~~-N~I~~   78 (175)
T PF14580_consen   19 VKLRELNLRGNQ-ISTIENLGATLDK-LEVLDLSNNQ-ITK------------LEGLP----GLPRLKTLDLSN-NRISS   78 (175)
T ss_dssp             ------------------S--TT-TT---EEE-TTS---S--------------TT--------TT--EEE--S-S---S
T ss_pred             cccccccccccc-cccccchhhhhcC-CCEEECCCCC-Ccc------------ccCcc----ChhhhhhcccCC-CCCCc
Confidence            467777887765 55555555 4666 7777777754 221            11122    245777887777 35555


Q ss_pred             ccccC-cCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCc--cccchhhhccCCCcceEEeec
Q 023528          105 LPNCI-HNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       105 lp~~~-~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      ++.++ ..+++|++|++++ +.+..+...   ..+++|+.|++.+|+..  ...-...+..+|+|+.||-..
T Consensus        79 i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            54444 3567777777776 344444322   34567777777765533  111222345666666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.36  E-value=2e-08  Score=88.93  Aligned_cols=155  Identities=26%  Similarity=0.345  Sum_probs=114.3

Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchh
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                      .++.+|..++.+..|.+++++. ..++.+|.++..| -|+.|-+++ +.++.+|.. +....|..++.+.| .+..++. 
T Consensus       109 ~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slps-  183 (722)
T KOG0532|consen  109 CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPS-  183 (722)
T ss_pred             cceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchH-
Confidence            4567777777788888888888 5667777777665 467777776 577777765 56678888888774 4455554 


Q ss_pred             hhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC----CCCC
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK----QGLP  229 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~----~~~~  229 (281)
                      .+.++.+|+.|.+..  +.+..+|+  .--.|.+||++. |++..||..+.+++.|++|.+.+++ +..-|.    .|..
T Consensus       184 ql~~l~slr~l~vrR--n~l~~lp~El~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkV  259 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRR--NHLEDLPEELCSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKV  259 (722)
T ss_pred             HhhhHHHHHHHHHhh--hhhhhCCHHHhCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccce
Confidence            577888899888887  66777776  222588999997 8999999777999999999998854 555443    3445


Q ss_pred             CCCcEEecCCC
Q 023528          230 KSLLRLGIDDC  240 (281)
Q Consensus       230 ~~L~~L~l~~c  240 (281)
                      .-.++|++..|
T Consensus       260 HIFKyL~~qA~  270 (722)
T KOG0532|consen  260 HIFKYLSTQAC  270 (722)
T ss_pred             eeeeeecchhc
Confidence            56788888777

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.36  E-value=4.7e-07  Score=70.39  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=17.6

Q ss_pred             CccEEEeccCcccccccccCc-CCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           90 KLTRLTIWKCKNLKALPNCIH-NLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      ++++|++.|+ .+..+ +.++ .+.+|+.|++++ ..++.+.....++.|++|++++ +.++.+.......+++|++|++
T Consensus        20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccc-ccccc-cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence            4566666663 34433 2443 355666666665 3555555444556666666665 3333332211234566666666


Q ss_pred             ec
Q 023528          169 RG  170 (281)
Q Consensus       169 ~~  170 (281)
                      ++
T Consensus        96 ~~   97 (175)
T PF14580_consen   96 SN   97 (175)
T ss_dssp             TT
T ss_pred             cC
Confidence            55

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.1e-07  Score=81.86  Aligned_cols=192  Identities=15%  Similarity=0.124  Sum_probs=113.6

Q ss_pred             ccceeecccCCCCCcccCCC---CCccCcCceeeccCCcCcccc-cc---CCCcCCcCcEEEecCCcchhccccceeecC
Q 023528            2 KQDISRSSSGSTSRTPFSSE---NELPATLEHLEVTHCSNLAFL-SW---NGNLPRALKYLYVKDCSKLESLAERIWIFG   74 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~---~~~~~~L~~L~l~~~~~l~~l-~~---~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~   74 (281)
                      |+|+...+.++. +... +.   ....++++.|+++.+- +..+ +.   ..++|+ |+.|+++.+...-.        .
T Consensus       121 kkL~~IsLdn~~-V~~~-~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~-Le~LNls~Nrl~~~--------~  188 (505)
T KOG3207|consen  121 KKLREISLDNYR-VEDA-GIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPS-LENLNLSSNRLSNF--------I  188 (505)
T ss_pred             HhhhheeecCcc-cccc-chhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhccc-chhcccccccccCC--------c
Confidence            567777777644 4433 21   1222588888888765 3322 22   566888 88888887541111        0


Q ss_pred             CCCCccCCCCCCCCCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCc-ccCCCCCCCCcCeEEecCCCCccc
Q 023528           75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLV-SFPEDGFPTNLQSLVVDDLKISKP  151 (281)
Q Consensus        75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~  151 (281)
                      -...+      ..+++|+.|.+++|-. ++-  -.-+..+++|+.|++.+...+. .......+..|+.|++++++.++.
T Consensus       189 ~s~~~------~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  189 SSNTT------LLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             cccch------hhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence            01111      1356889999998743 221  1123467888888888753222 112224567889999998776644


Q ss_pred             cchhhhccCCCcceEEeecCCCCCccC--CC--------CCCCccEEeccCCCCCccccccC---CCCCCcCEEeccC
Q 023528          152 LFEWGLDRFACLRELRIRGGCPDLVSS--PR--------FPASLTQLGISDMPTLKCLSSVG---ENLTSLETLDLSN  216 (281)
Q Consensus       152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~--------~~~~L~~L~l~~c~~l~~l~~~~---~~l~~L~~L~l~~  216 (281)
                      ....-...++.|..|+++. | .+.++  |.        .+++|+.|++.. +.+.+++ +.   ..+++|+.+.+..
T Consensus       262 ~~~~~~~~l~~L~~Lnls~-t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~-sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSS-T-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWR-SLNHLRTLENLKHLRITL  335 (505)
T ss_pred             ccccccccccchhhhhccc-c-CcchhcCCCccchhhhcccccceeeeccc-Ccccccc-ccchhhccchhhhhhccc
Confidence            3222467788888888887 3 33332  21        466899999998 5666555 22   4445666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=1.6e-06  Score=76.90  Aligned_cols=130  Identities=25%  Similarity=0.350  Sum_probs=68.2

Q ss_pred             cCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhc
Q 023528           80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLD  158 (281)
Q Consensus        80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~  158 (281)
                      .++.....+++|+.|++++| .+..+|.....++.|+.|++++ ..+..+|.. ..+..|+++.+.++.......  .+.
T Consensus       154 ~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~  229 (394)
T COG4886         154 SLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLS--SLS  229 (394)
T ss_pred             hhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecch--hhh
Confidence            33333344556666666663 4455554444556666666665 455555544 345556666666543332222  244


Q ss_pred             cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528          159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  217 (281)
                      .+.++..+.+..  +.+..++.   .+.+++.|++++ +.+..++. .+.+.+++++++++.
T Consensus       230 ~~~~l~~l~l~~--n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         230 NLKNLSGLELSN--NKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hcccccccccCC--ceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCc
Confidence            555555555443  33333222   444566677666 56666652 455666666776663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.19  E-value=3e-06  Score=75.15  Aligned_cols=158  Identities=24%  Similarity=0.278  Sum_probs=114.2

Q ss_pred             CCccCCCCCCCCC-CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCC-CCCCcCeEEecCCCCccccch
Q 023528           77 NLESFPEGGLPST-KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDG-FPTNLQSLVVDDLKISKPLFE  154 (281)
Q Consensus        77 ~l~~l~~~~~~~~-~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~  154 (281)
                      .+..++......+ +|+.|++++ ..+..+|..+..++.|+.|++++ +.+..++... .+++|+.+++++ +.+..++.
T Consensus       127 ~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~  203 (394)
T COG4886         127 NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPP  203 (394)
T ss_pred             ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCch
Confidence            4556666666664 899999999 56777777888999999999998 4677777664 889999999998 56666664


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL  232 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L  232 (281)
                       .......|+++.++. ...+.....  ...++..+.+.+ +.+..++...+.++++++|++++ +.+..++..+-..++
T Consensus       204 -~~~~~~~L~~l~~~~-N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l  279 (394)
T COG4886         204 -EIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNL  279 (394)
T ss_pred             -hhhhhhhhhhhhhcC-CcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccc-ccccccccccccCcc
Confidence             223555699999998 322332222  445666777666 56666553448888899999998 578888774446789


Q ss_pred             cEEecCCCc
Q 023528          233 LRLGIDDCP  241 (281)
Q Consensus       233 ~~L~l~~c~  241 (281)
                      +.|++++..
T Consensus       280 ~~L~~s~n~  288 (394)
T COG4886         280 RELDLSGNS  288 (394)
T ss_pred             CEEeccCcc
Confidence            999988743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.10  E-value=6.4e-07  Score=73.93  Aligned_cols=182  Identities=16%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhcc----ccc--eeecCCC---CCccCCCCCCCCCCccEEE
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESL----AER--IWIFGCP---NLESFPEGGLPSTKLTRLT   95 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~----p~~--L~l~~~~---~l~~l~~~~~~~~~L~~L~   95 (281)
                      .+|+.+.++.|. -+.+-. ...-|. |..+..+... +...    |..  .+..+-.   .-...-..+-.+..|+.++
T Consensus       214 ~~l~~~~~s~~~-~~~i~~~~~~kpt-l~t~~v~~s~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  214 RNLKTLKFSALS-TENIVDIELLKPT-LQTICVHNTT-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             hhhheeeeeccc-hhheeceeecCch-hheeeeeccc-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            688888888887 333332 233455 8877766532 1111    110  0000000   0000000111134566666


Q ss_pred             eccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCC
Q 023528           96 IWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDL  175 (281)
Q Consensus        96 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (281)
                      +++ +.+..+.+++.-.+.++.|++++ +++..+.....+++|+.|++++ +.+..+.. +-.++-++++|.+++  +.+
T Consensus       291 LS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~-N~Ls~~~G-wh~KLGNIKtL~La~--N~i  364 (490)
T KOG1259|consen  291 LSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSG-NLLAECVG-WHLKLGNIKTLKLAQ--NKI  364 (490)
T ss_pred             ccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhcccceEeeccc-chhHhhhh-hHhhhcCEeeeehhh--hhH
Confidence            666 34555555666666666666666 3455554445566666666666 33333321 233455666666665  444


Q ss_pred             ccCCC--CCCCccEEeccCCCCCccccc--cCCCCCCcCEEeccCC
Q 023528          176 VSSPR--FPASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNC  217 (281)
Q Consensus       176 ~~~~~--~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c  217 (281)
                      .++..  -.-+|..||+++ ++++.+..  .++.++.|+++.+.++
T Consensus       365 E~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  365 ETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence            44433  223566666666 44444321  1256666666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.2e-07  Score=76.50  Aligned_cols=130  Identities=17%  Similarity=0.139  Sum_probs=80.6

Q ss_pred             CCCccEEEeccCcccccccc--cCcCCCCccEEeecCCcCCcccC-C--CCCCCCcCeEEecCCCCc--cccchhhhccC
Q 023528           88 STKLTRLTIWKCKNLKALPN--CIHNLTSLLHLEIRECRSLVSFP-E--DGFPTNLQSLVVDDLKIS--KPLFEWGLDRF  160 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~l~-~--~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l  160 (281)
                      =.+|+.|++++|..+++...  -+.+++.|..|++++|-..+..- .  ..--++|+.|+++|+...  ..-......++
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            45788888888887765432  24678888888888874443321 1  123467788888887543  11112234678


Q ss_pred             CCcceEEeecCCCCCccCC--C--CCCCccEEeccCCCCCcccc-ccCCCCCCcCEEeccCCC
Q 023528          161 ACLRELRIRGGCPDLVSSP--R--FPASLTQLGISDMPTLKCLS-SVGENLTSLETLDLSNCP  218 (281)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~--~--~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~  218 (281)
                      ++|.+||+++ |..++.--  +  -++.|++|+++.|..+..-- ......++|.+|++.||.
T Consensus       313 p~l~~LDLSD-~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  313 PNLVHLDLSD-SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             Cceeeecccc-ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            8888888888 76655410  1  45578888888886543210 022566778888887763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.02  E-value=1.1e-05  Score=51.41  Aligned_cols=31  Identities=45%  Similarity=0.588  Sum_probs=12.7

Q ss_pred             ccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528          185 LTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN  216 (281)
Q Consensus       185 L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~  216 (281)
                      |++|++++ +.++.+|..+ ..+++|++|++++
T Consensus         3 L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~   34 (61)
T PF13855_consen    3 LESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN   34 (61)
T ss_dssp             ESEEEETS-STESEECTTTTTTGTTESEEEETS
T ss_pred             CcEEECCC-CCCCccCHHHHcCCCCCCEeEccC
Confidence            34444444 2344444333 4444444444443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.00  E-value=6e-07  Score=74.11  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=23.9

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKD   59 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~   59 (281)
                      +.+.++.+++ ..++.+..+..+.|.++.|+++.+. +..+..+..+++ |..|++++
T Consensus       284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~-L~~LDLS~  338 (490)
T KOG1259|consen  284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQ-LQLLDLSG  338 (490)
T ss_pred             hhhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeehhhhhccc-ceEeeccc
Confidence            3344444444 2244442222233455555555443 333334444555 55555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.98  E-value=1.8e-07  Score=83.01  Aligned_cols=156  Identities=23%  Similarity=0.373  Sum_probs=93.5

Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhh
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWG  156 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~  156 (281)
                      ++..+|..++.+-.|+.+.+.. ..+..+|..+.++..|.+++++. +.+..+|.....--|+.+.+++ +.++.+|. .
T Consensus        86 R~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~-~  161 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSN-NKLTSLPE-E  161 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEec-CccccCCc-c
Confidence            4455566555555666666655 34555666777777777777765 4555555543333456666655 55555554 3


Q ss_pred             hccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCC
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSL  232 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L  232 (281)
                      ++..+.|..|+++.  +++.++|.   ...+|+.|.+.. +++..+|.+...+ .|..||++. +++..+|.. .....|
T Consensus       162 ig~~~tl~~ld~s~--nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~L  236 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSK--NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDFRKMRHL  236 (722)
T ss_pred             cccchhHHHhhhhh--hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeeccc-Cceeecchhhhhhhhh
Confidence            45666677777775  45555554   455666777776 5666666444432 456677764 677777762 225667


Q ss_pred             cEEecCCCc
Q 023528          233 LRLGIDDCP  241 (281)
Q Consensus       233 ~~L~l~~c~  241 (281)
                      ++|.+++.|
T Consensus       237 q~l~LenNP  245 (722)
T KOG0532|consen  237 QVLQLENNP  245 (722)
T ss_pred             eeeeeccCC
Confidence            777777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.97  E-value=1.3e-05  Score=51.05  Aligned_cols=55  Identities=29%  Similarity=0.377  Sum_probs=46.2

Q ss_pred             CCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          161 ACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      ++|++|++++  +.+..++.    ..++|++|++++ +.++.++... .++++|++|++++|.
T Consensus         1 p~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETS--STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCC--CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            5789999998  47777775    567999999998 6889998666 999999999999863

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.5e-07  Score=74.71  Aligned_cols=131  Identities=18%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             CCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhcc-CCCcceEEeecCCCCCccCCC------
Q 023528          111 NLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDR-FACLRELRIRGGCPDLVSSPR------  180 (281)
Q Consensus       111 ~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~------  180 (281)
                      .-..|+.++++.|++++.....   ..++.|..|++++|...++.......+ -++|..|++++ |...-....      
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG-~rrnl~~sh~~tL~~  310 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG-YRRNLQKSHLSTLVR  310 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh-hHhhhhhhHHHHHHH
Confidence            3445555555555544433221   234455555555554443221111111 23455555555 322110001      


Q ss_pred             CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCccc--ccCCCCCCCCcEEecCCCch
Q 023528          181 FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKY--FSKQGLPKSLLRLGIDDCPL  242 (281)
Q Consensus       181 ~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~--i~~~~~~~~L~~L~l~~c~~  242 (281)
                      -.+++.+||+++|..++.- ...+-.++.|++|.++.|=.+..  +-..+-.++|.+|++.+|-.
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            3557888888888766541 10125777888888888854321  10112257899999988863

>PLN03150 hypothetical protein; Provisional

Probab=97.73  E-value=9.7e-05  Score=69.35  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      .++.|+++++..-..+|..+..+++|+.|+++++.....+|.. +.+++|+.|++++|.....+|. .+.++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEEC
Confidence            4788999997666678888999999999999986555567753 7789999999999766566664 6889999999999


Q ss_pred             ecCCCCCccCCC----CCCCccEEeccCCCCCccc
Q 023528          169 RGGCPDLVSSPR----FPASLTQLGISDMPTLKCL  199 (281)
Q Consensus       169 ~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l  199 (281)
                      ++ +.-...+|.    ...++..+++.++..+-..
T Consensus       498 s~-N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        498 NG-NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             cC-CcccccCChHHhhccccCceEEecCCccccCC
Confidence            98 655556665    2345667777775444333

>PLN03150 hypothetical protein; Provisional

Probab=97.66  E-value=0.00017  Score=67.77  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             CccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEe
Q 023528          114 SLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLG  189 (281)
Q Consensus       114 ~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~  189 (281)
                      .++.|++.++.....+|.. ..+++|+.|++++|.....+|. .+..+++|+.|++++ +.-...+|.   ..++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEE
Confidence            4678888876544455544 6778999999999765566764 588999999999998 555556676   567899999


Q ss_pred             ccCCCCCccccccC-CCCCCcCEEeccCCCCcccccC
Q 023528          190 ISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       190 l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                      +++++--+.+|... ....++..+++.++..+...|.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99965556888555 3345677888888766665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.37  E-value=5.6e-05  Score=71.18  Aligned_cols=122  Identities=25%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CccEEEeccCccc-ccccccC-cCCCCccEEeecCCcCCcc-cC-CCCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528           90 KLTRLTIWKCKNL-KALPNCI-HNLTSLLHLEIRECRSLVS-FP-EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE  165 (281)
Q Consensus        90 ~L~~L~l~~c~~l-~~lp~~~-~~l~~L~~L~l~~~~~l~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  165 (281)
                      +|++|+++|-..+ ..+|..+ ..+|+|+.|.+.+...... +. .....|+|..|+|++ ..++.+.  +++++++|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~--GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLS--GISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcH--HHhccccHHH
Confidence            5666666663322 1122222 2566666666665222111 11 013456666666666 3334442  5666666666


Q ss_pred             EEeecCCCCCccCCC-----CCCCccEEeccCCCCCc--cccc---cC-CCCCCcCEEeccC
Q 023528          166 LRIRGGCPDLVSSPR-----FPASLTQLGISDMPTLK--CLSS---VG-ENLTSLETLDLSN  216 (281)
Q Consensus       166 L~l~~~~~~~~~~~~-----~~~~L~~L~l~~c~~l~--~l~~---~~-~~l~~L~~L~l~~  216 (281)
                      |.+.+  -++.....     ..++|+.||++.-....  .+..   +. ..+|.|+.||.++
T Consensus       200 L~mrn--Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  200 LSMRN--LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HhccC--CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            66654  22222221     45566666666522111  0110   11 4566777777775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.32  E-value=9.4e-05  Score=62.42  Aligned_cols=233  Identities=15%  Similarity=0.149  Sum_probs=133.6

Q ss_pred             CcCceeeccCCcCcc----cc-ccCCCcCCcCcEEEecCCc--ch-hccccceeecCCCCCccCCCCCCCCCCccEEEec
Q 023528           26 ATLEHLEVTHCSNLA----FL-SWNGNLPRALKYLYVKDCS--KL-ESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIW   97 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~----~l-~~~~~l~~~L~~L~l~~~~--~l-~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~   97 (281)
                      .+++.++++++..-.    .+ +.+.+.++ |++.++++.-  .+ .++|.        .+..+......+|+|++++++
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~-L~~v~~sd~ftGR~~~Ei~e--------~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKE-LREVNLSDMFTGRLKDEIPE--------ALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhccc-ceeeehHhhhcCCcHHHHHH--------HHHHHHHHHhcCCceeEeecc
Confidence            578888999876222    11 22666777 8888887632  00 11121        112222233446799999999


Q ss_pred             cCcccccccc----cCcCCCCccEEeecCCcCCccc---------------CCCCCCCCcCeEEecCCCCccccc----h
Q 023528           98 KCKNLKALPN----CIHNLTSLLHLEIRECRSLVSF---------------PEDGFPTNLQSLVVDDLKISKPLF----E  154 (281)
Q Consensus        98 ~c~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~l---------------~~~~~~~~L~~L~l~~~~~~~~~~----~  154 (281)
                      ++..=..-+.    -+.++..|++|.+.+| ++...               ......+.|+.+.... +.+.+.+    .
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A  178 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALA  178 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHH
Confidence            9654222222    2357889999999987 33221               1124568889888877 4443322    2


Q ss_pred             hhhccCCCcceEEeecCCCCCcc--CCC------CCCCccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCcc
Q 023528          155 WGLDRFACLRELRIRGGCPDLVS--SPR------FPASLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLK  221 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~--~~~------~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~  221 (281)
                      ..++..+.|+.+.+.+  +.+..  +..      ..++|+.|++.+ |-++.     +......+++|++|++.+|. ++
T Consensus       179 ~~~~~~~~leevr~~q--N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~  254 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQ--NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LE  254 (382)
T ss_pred             HHHHhccccceEEEec--ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cc
Confidence            3456667888888887  33321  111      467899999988 44432     11111566788999999884 22


Q ss_pred             cccC-------CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEeeec
Q 023528          222 YFSK-------QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEE  280 (281)
Q Consensus       222 ~i~~-------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  280 (281)
                      .-..       ....++|+.|.+.+|..-.+.....       +......+++..+.++|++..|.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l-------a~~~~ek~dL~kLnLngN~l~e~  313 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL-------AACMAEKPDLEKLNLNGNRLGEK  313 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH-------HHHHhcchhhHHhcCCccccccc
Confidence            2111       1125788888888887543321110       01123366777777888776443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.24  E-value=0.00043  Score=40.69  Aligned_cols=41  Identities=34%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC
Q 023528          183 ASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       183 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                      ++|++|++++ +.++.+|..++.+++|++|++++| .+++++.
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            3788999998 689999855789999999999996 6776654

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.23  E-value=6.4e-06  Score=75.54  Aligned_cols=102  Identities=28%  Similarity=0.247  Sum_probs=68.7

Q ss_pred             CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcC
Q 023528          134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLE  210 (281)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~  210 (281)
                      +++.+++|+++.| .++...  .+..++.|++||+++  +.+..+|.   .-..|+.|.+.+ |.++.+- ...++.+|+
T Consensus       185 ll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsy--N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~  257 (1096)
T KOG1859|consen  185 LLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSY--NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLY  257 (1096)
T ss_pred             HHHHhhhhccchh-hhhhhH--HHHhccccccccccc--chhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhh
Confidence            4567888888874 444443  477888888888887  56666665   223488888888 6777765 447888888


Q ss_pred             EEeccCCCCcccccCC---CCCCCCcEEecCCCchH
Q 023528          211 TLDLSNCPKLKYFSKQ---GLPKSLLRLGIDDCPLM  243 (281)
Q Consensus       211 ~L~l~~c~~l~~i~~~---~~~~~L~~L~l~~c~~l  243 (281)
                      .||+++ +-+.+....   ..+.+|++|++.++|.-
T Consensus       258 ~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888888 344444331   12457788888887743

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.23  E-value=0.00041  Score=65.50  Aligned_cols=128  Identities=20%  Similarity=0.219  Sum_probs=82.6

Q ss_pred             CCCCccEEeecCCcCC-cccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCc
Q 023528          111 NLTSLLHLEIRECRSL-VSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASL  185 (281)
Q Consensus       111 ~l~~L~~L~l~~~~~l-~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L  185 (281)
                      .-..|++|+++|-..+ ..++.  +..+|+|++|.+.+-....+.......++++|..||+++  .++..+..  ..++|
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~--TnI~nl~GIS~LknL  197 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG--TNISNLSGISRLKNL  197 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC--CCccCcHHHhccccH
Confidence            3468899999873322 12221  246899999999984443333334567999999999999  45555533  45677


Q ss_pred             cEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccc-------cCCCCCCCCcEEecCCCc
Q 023528          186 TQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYF-------SKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       186 ~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i-------~~~~~~~~L~~L~l~~c~  241 (281)
                      +.|.+.+. .++.-..  ...++++|+.||++.-.+...-       .....+|.||.||.++..
T Consensus       198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            77777664 2332210  1168999999999985443321       112347899999999754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.22  E-value=0.00047  Score=40.51  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=25.7

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCc
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCS   61 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~   61 (281)
                      ++|++|+++++. +..+|. ++.+++ |++|+++++.
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~-L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPN-LETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTT-SSEEEETSSC
T ss_pred             CcceEEEccCCC-CcccCchHhCCCC-CCEEEecCCC
Confidence            478888888776 777877 888888 8888888874

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.04  E-value=6.8e-06  Score=75.37  Aligned_cols=124  Identities=23%  Similarity=0.206  Sum_probs=79.6

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF   81 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l   81 (281)
                      .+|.+.+.+ |..+..+..+..+.+.|+.|+++++. +..+..+..+++ |++|+|+.+. +..+            ..+
T Consensus       164 n~L~~a~fs-yN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~-LkhLDlsyN~-L~~v------------p~l  227 (1096)
T KOG1859|consen  164 NKLATASFS-YNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPK-LKHLDLSYNC-LRHV------------PQL  227 (1096)
T ss_pred             hhHhhhhcc-hhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhccc-ccccccccch-hccc------------ccc
Confidence            445555555 34455553333455789999999876 666667778889 9999997742 2222            222


Q ss_pred             CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCC
Q 023528           82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLK  147 (281)
Q Consensus        82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~  147 (281)
                      ...++   +|+.|.++++ .++.+ -++.++++|+.|++++ +.+.....   ...+..|+.|++.||+
T Consensus       228 ~~~gc---~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  228 SMVGC---KLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             chhhh---hheeeeeccc-HHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            23333   5899999984 55655 4788999999999987 23332222   2345677788888755

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.96  E-value=0.00023  Score=63.60  Aligned_cols=31  Identities=35%  Similarity=0.353  Sum_probs=15.1

Q ss_pred             ccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      |+.+.+.+ +.+..++..+..+..+..+++..
T Consensus       234 L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  234 LRELYLSG-NRISRSPEGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHHHhccc-Cccccccccccccccccccchhh
Confidence            55555555 44444431224445555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.85  E-value=7.2e-05  Score=67.81  Aligned_cols=151  Identities=22%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             CCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCccc--CC-CCCCCCcCeEEecCCC---Cccccc------
Q 023528           88 STKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLVSF--PE-DGFPTNLQSLVVDDLK---ISKPLF------  153 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~l--~~-~~~~~~L~~L~l~~~~---~~~~~~------  153 (281)
                      +++|+.|.+.+|..++.-  -.....++.|++|++++|..++.-  .. ...+++++.+.+..+.   .++...      
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~  347 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT  347 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence            678999988888764321  122356788999999988765321  11 1234555554443332   232221      


Q ss_pred             -------hhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCC-ccccccCCCCCCcCEEeccCCCCcccccC
Q 023528          154 -------EWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTL-KCLSSVGENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       154 -------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                             .....++++++.+.+.. |. ..+      ....+.+.+|..+ ..+........+++.|++..|...+.-..
T Consensus       348 ~~~d~~~~~~~~~~~~l~~~~l~~-~~-~~~------~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l  419 (482)
T KOG1947|consen  348 LTSDDLAELILRSCPKLTDLSLSY-CG-ISD------LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGL  419 (482)
T ss_pred             cCchhHhHHHHhcCCCcchhhhhh-hh-ccC------cchHHHhcCCcccchHHHHHhccCCccceEecccCccccccch
Confidence                   11223344444444443 32 111      1114566667666 33321123333478888888765544221


Q ss_pred             --CCC-CCCCcEEecCCCchHHHH
Q 023528          226 --QGL-PKSLLRLGIDDCPLMEKR  246 (281)
Q Consensus       226 --~~~-~~~L~~L~l~~c~~l~~~  246 (281)
                        .+. ...+..+++.+|+.....
T Consensus       420 ~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  420 RCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             HHHhhhhhccccCCccCcccccch
Confidence              111 455677778888766544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.83  E-value=0.00027  Score=63.12  Aligned_cols=128  Identities=18%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             CCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch-hhhccCCCcc
Q 023528           86 LPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE-WGLDRFACLR  164 (281)
Q Consensus        86 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~  164 (281)
                      ..+++|+.|++++ ..++.+ .++..++.|+.|++.+ +.+..+.....+.+|+.+++.++. +..+.. . ...+.+++
T Consensus       115 ~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNR-IVDIENDE-LSELISLE  189 (414)
T ss_pred             hhhhcchheeccc-cccccc-cchhhccchhhheecc-CcchhccCCccchhhhcccCCcch-hhhhhhhh-hhhccchH
Confidence            3356788888877 456655 3566667777777777 456666655557777777777743 333321 1 35666777


Q ss_pred             eEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCC--CcCEEeccCCCCcccc
Q 023528          165 ELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLT--SLETLDLSNCPKLKYF  223 (281)
Q Consensus       165 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~~l~~i  223 (281)
                      .+.++.  +.+..+..  ....+..+++.. +.+..+. ....+.  +|+.+++.+ +.+..+
T Consensus       190 ~l~l~~--n~i~~i~~~~~~~~l~~~~l~~-n~i~~~~-~l~~~~~~~L~~l~l~~-n~i~~~  247 (414)
T KOG0531|consen  190 ELDLGG--NSIREIEGLDLLKKLVLLSLLD-NKISKLE-GLNELVMLHLRELYLSG-NRISRS  247 (414)
T ss_pred             HHhccC--CchhcccchHHHHHHHHhhccc-ccceecc-CcccchhHHHHHHhccc-Cccccc
Confidence            777776  44443332  222333344444 4444443 111222  278888887 344444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.77  E-value=0.0043  Score=48.81  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC--CCCCCc
Q 023528          136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG--ENLTSL  209 (281)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~--~~l~~L  209 (281)
                      .+...+++.+ +.+..+.  .|.++++|.+|.++.  +.++.+..    ..+++..|.+.+ +.+..+..-.  ..++.|
T Consensus        42 d~~d~iDLtd-Ndl~~l~--~lp~l~rL~tLll~n--NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTD-NDLRKLD--NLPHLPRLHTLLLNN--NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccc-cchhhcc--cCCCccccceEEecC--CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcc
Confidence            3445556655 3333332  355667777777776  55665543    455677777777 5555544111  677788


Q ss_pred             CEEeccCCCCcccccCCC-----CCCCCcEEecCCCch
Q 023528          210 ETLDLSNCPKLKYFSKQG-----LPKSLLRLGIDDCPL  242 (281)
Q Consensus       210 ~~L~l~~c~~l~~i~~~~-----~~~~L~~L~l~~c~~  242 (281)
                      ++|.+-++ .++.-....     .+++|+.||+..-..
T Consensus       116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ceeeecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence            88887773 344333211     157788887766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.63  E-value=0.00022  Score=60.19  Aligned_cols=200  Identities=17%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             CcCceeeccCCcCcc---cccc--------CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEE
Q 023528           26 ATLEHLEVTHCSNLA---FLSW--------NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRL   94 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~---~l~~--------~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L   94 (281)
                      ++|++.++++..--.   .+|.        +-..|+ |++++|+++. ++.       .+-+.+..   -+..+..|+.|
T Consensus        58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~-L~~ldLSDNA-~G~-------~g~~~l~~---ll~s~~~L~eL  125 (382)
T KOG1909|consen   58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK-LQKLDLSDNA-FGP-------KGIRGLEE---LLSSCTDLEEL  125 (382)
T ss_pred             ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc-eeEeeccccc-cCc-------cchHHHHH---HHHhccCHHHH
Confidence            578888888753111   2232        445677 8899988864 221       11122222   22224577888


Q ss_pred             EeccCcccccc--------------cccCcCCCCccEEeecCCcCCcccCCC------CCCCCcCeEEecCCCCcc---c
Q 023528           95 TIWKCKNLKAL--------------PNCIHNLTSLLHLEIRECRSLVSFPED------GFPTNLQSLVVDDLKISK---P  151 (281)
Q Consensus        95 ~l~~c~~l~~l--------------p~~~~~l~~L~~L~l~~~~~l~~l~~~------~~~~~L~~L~l~~~~~~~---~  151 (281)
                      .+.+| .++..              .+-..+-+.|+.+...+ +.+...+..      ...+.|+.+.+..+....   .
T Consensus       126 ~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~  203 (382)
T KOG1909|consen  126 YLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT  203 (382)
T ss_pred             hhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhH
Confidence            88776 33211              11234556777776665 344433321      234678888887755431   1


Q ss_pred             cchhhhccCCCcceEEeecCCCCCccCC-----C---CCCCccEEeccCCCCCc----cccccC-CCCCCcCEEeccCCC
Q 023528          152 LFEWGLDRFACLRELRIRGGCPDLVSSP-----R---FPASLTQLGISDMPTLK----CLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~---~~~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      +-...+.++++|+.|++.+  +..+.-.     .   .+++|+.|.+.+|.--.    .+-... ...++|+.+.+.+|.
T Consensus       204 al~eal~~~~~LevLdl~D--Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  204 ALAEALEHCPHLEVLDLRD--NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHHHhCCcceeeeccc--chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            2234577888888888887  2222111     0   34478888888874211    222122 457888888888853


Q ss_pred             CcccccC------CCCCCCCcEEecCCCch
Q 023528          219 KLKYFSK------QGLPKSLLRLGIDDCPL  242 (281)
Q Consensus       219 ~l~~i~~------~~~~~~L~~L~l~~c~~  242 (281)
                       ++.-..      .+--+.|++|++++|..
T Consensus       282 -It~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  282 -ITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             -hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             321100      01146788888887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.16  E-value=0.00052  Score=62.22  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=17.2

Q ss_pred             CCCcCeEEecCCCCcccc-chhhhccCCCcceEEeecCCCCC
Q 023528          135 PTNLQSLVVDDLKISKPL-FEWGLDRFACLRELRIRGGCPDL  175 (281)
Q Consensus       135 ~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~  175 (281)
                      +++|+.|.+.+|..+++. .......+++|++|++++ |..+
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-Cccc
Confidence            445555554444433221 111233445555555555 4443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.92  E-value=0.026  Score=44.51  Aligned_cols=98  Identities=19%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCc--cccchhhhccCCCc
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACL  163 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L  163 (281)
                      ..+...++++++ .+..+ ..+..++.|..|.+.+ +.++.+...  .+.++|.+|.+.+|...  .++.  .+..++.|
T Consensus        41 ~d~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKL  115 (233)
T ss_pred             ccccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcc--hhccCCcc
Confidence            346677778774 44444 3566788888888876 566666544  46678888888875432  3333  46777788


Q ss_pred             ceEEeecCCCCCccCCC-------CCCCccEEeccC
Q 023528          164 RELRIRGGCPDLVSSPR-------FPASLTQLGISD  192 (281)
Q Consensus       164 ~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~  192 (281)
                      ++|.+-+  +.+..-..       ..++|+.||+.+
T Consensus       116 ~~Ltll~--Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  116 EYLTLLG--NPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ceeeecC--CchhcccCceeEEEEecCcceEeehhh
Confidence            8887776  33332221       234666666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.0033  Score=52.42  Aligned_cols=79  Identities=22%  Similarity=0.286  Sum_probs=39.3

Q ss_pred             CcCceeeccCCcCcccccc----CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcc
Q 023528           26 ATLEHLEVTHCSNLAFLSW----NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN  101 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~----~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  101 (281)
                      +.++++++.++. +..+..    ..++|. |+.|+++.+..-            +-+..+|   .+..+|+.|.+.| +.
T Consensus        71 ~~v~elDL~~N~-iSdWseI~~ile~lP~-l~~LNls~N~L~------------s~I~~lp---~p~~nl~~lVLNg-T~  132 (418)
T KOG2982|consen   71 TDVKELDLTGNL-ISDWSEIGAILEQLPA-LTTLNLSCNSLS------------SDIKSLP---LPLKNLRVLVLNG-TG  132 (418)
T ss_pred             hhhhhhhcccch-hccHHHHHHHHhcCcc-ceEeeccCCcCC------------CccccCc---ccccceEEEEEcC-CC
Confidence            455555555543 332222    455666 666666554311            1223333   3455888888877 55


Q ss_pred             cccc--cccCcCCCCccEEeecC
Q 023528          102 LKAL--PNCIHNLTSLLHLEIRE  122 (281)
Q Consensus       102 l~~l--p~~~~~l~~L~~L~l~~  122 (281)
                      +.+-  -..+..++.++.|.++.
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhcc
Confidence            4332  11234455555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.96  E-value=0.019  Score=28.06  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=11.9

Q ss_pred             CccEEEeccCcccccccccCc
Q 023528           90 KLTRLTIWKCKNLKALPNCIH  110 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~  110 (281)
                      +|++|++++| .++.+|.+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            4666777776 4456665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.0063  Score=47.86  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      .++.++.+++.-..+=-..+..+++++.|.+.+|..+..+...   +..++|+.|++++|+.+++..-..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4666776663222111145567778888888887666544321   3557888888888888877665567777777777


Q ss_pred             Eeec
Q 023528          167 RIRG  170 (281)
Q Consensus       167 ~l~~  170 (281)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.68  E-value=0.24  Score=36.01  Aligned_cols=29  Identities=17%  Similarity=0.408  Sum_probs=10.8

Q ss_pred             CccEEeccCCCCCccccccC-CCCCCcCEEecc
Q 023528          184 SLTQLGISDMPTLKCLSSVG-ENLTSLETLDLS  215 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~  215 (281)
                      +++.+.+..  .+..++... .+. .|+.+.+.
T Consensus        82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            445555433  244444333 343 55555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=0.053  Score=45.49  Aligned_cols=17  Identities=24%  Similarity=0.415  Sum_probs=9.9

Q ss_pred             CCCCcEEecCCCchHHH
Q 023528          229 PKSLLRLGIDDCPLMEK  245 (281)
Q Consensus       229 ~~~L~~L~l~~c~~l~~  245 (281)
                      +++|+-|.+.+.|....
T Consensus       248 f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  248 FPQLVDLRVSENPLSDP  264 (418)
T ss_pred             CchhheeeccCCccccc
Confidence            45666666666664443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.0038  Score=51.58  Aligned_cols=59  Identities=19%  Similarity=0.065  Sum_probs=25.3

Q ss_pred             CCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528          111 NLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       111 ~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      .++.|+.|.++- +.+..+.....++.|+.|++..|..-.-.-..-+.++++|+.|.+..
T Consensus        39 kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   39 KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             hcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            445555555553 33444433344455555555542211111111344555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.07  E-value=0.063  Score=43.95  Aligned_cols=82  Identities=16%  Similarity=0.034  Sum_probs=42.4

Q ss_pred             CCCccEEEeccCc--ccccccccCcCCCCccEEeecCCcCCc---ccCCCCCCCCcCeEEecCCCCc--cccchhhhccC
Q 023528           88 STKLTRLTIWKCK--NLKALPNCIHNLTSLLHLEIRECRSLV---SFPEDGFPTNLQSLVVDDLKIS--KPLFEWGLDRF  160 (281)
Q Consensus        88 ~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~~~~l~---~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l  160 (281)
                      +|+|++|.++.+.  -...++.-...+++|+++++++. .+.   .+.....+.+|.+|++.+|...  .+.-...|.-+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            4566777666652  22223222334466666666652 222   2222234456666666665432  33333455666


Q ss_pred             CCcceEEeec
Q 023528          161 ACLRELRIRG  170 (281)
Q Consensus       161 ~~L~~L~l~~  170 (281)
                      ++|++|+-..
T Consensus       143 ~~L~~LD~~d  152 (260)
T KOG2739|consen  143 PSLKYLDGCD  152 (260)
T ss_pred             hhhccccccc
Confidence            7777776655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.58  E-value=0.015  Score=45.84  Aligned_cols=38  Identities=37%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             CCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCch
Q 023528          205 NLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCPL  242 (281)
Q Consensus       205 ~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~~  242 (281)
                      -.++|+.|++++|+++++-...  ..+++|+.|.+.+.+.
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            4456666666666666552211  1145666666666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.31  E-value=1.1  Score=32.33  Aligned_cols=77  Identities=19%  Similarity=0.275  Sum_probs=35.3

Q ss_pred             CCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc
Q 023528           88 STKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR  164 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  164 (281)
                      +++|+.+.+..  .+..++ ..+..+++|+.+.+.+  .+..++..  ...++++.+.+.+  ....++...+..+++++
T Consensus        11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccccccc
Confidence            44666666653  233443 3455666677777654  24444433  3344677777753  33344444566677777


Q ss_pred             eEEeec
Q 023528          165 ELRIRG  170 (281)
Q Consensus       165 ~L~l~~  170 (281)
                      .+.+..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            777754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.03  E-value=0.12  Score=23.36  Aligned_cols=10  Identities=20%  Similarity=0.232  Sum_probs=3.7

Q ss_pred             CccEEEeccC
Q 023528           90 KLTRLTIWKC   99 (281)
Q Consensus        90 ~L~~L~l~~c   99 (281)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            3444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.96  E-value=0.011  Score=43.83  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP  218 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  218 (281)
                      +..-..|...++++  +...+||.    .++.+.+|++.+ +++.++|.+...++.|+.|+++.++
T Consensus        49 l~~~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~  111 (177)
T KOG4579|consen   49 LSKGYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP  111 (177)
T ss_pred             HhCCceEEEEeccc--chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence            34445566666666  56666665    344667777777 6777777666667777777777743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.53  E-value=0.18  Score=41.33  Aligned_cols=99  Identities=23%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CccEEEeccCcccccccccCcCCCCccEEeecCC--cCCcccCCC-CCCCCcCeEEecCCCCc--cccchhhhccCCCcc
Q 023528           90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIREC--RSLVSFPED-GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLR  164 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~--~~l~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~  164 (281)
                      .|+.|.+.++ .++.+ ..+..++.|++|.++..  .....++.. ...++|+++++++|..-  .++.  .+..+.+|.
T Consensus        44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLK  119 (260)
T ss_pred             chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchh
Confidence            5666666664 33333 35557788888888754  122222222 33488888888885432  3333  356677788


Q ss_pred             eEEeecCCCCCccCCC-------CCCCccEEeccCCC
Q 023528          165 ELRIRGGCPDLVSSPR-------FPASLTQLGISDMP  194 (281)
Q Consensus       165 ~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~  194 (281)
                      .|++.. |.... ...       ..++|+.|+-.+..
T Consensus       120 ~Ldl~n-~~~~~-l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  120 SLDLFN-CSVTN-LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhccc-CCccc-cccHHHHHHHHhhhhccccccccC
Confidence            888877 54433 221       45577777666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.84  E-value=0.018  Score=47.68  Aligned_cols=55  Identities=24%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             CCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528          112 LTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       112 l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      +.+.+.|+..|| ++..+.....++.|+.|.++- +.++++.  .+.+|++|++|.+..
T Consensus        18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSv-NkIssL~--pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSV-NKISSLA--PLQRCTRLKELYLRK   72 (388)
T ss_pred             HHHhhhhcccCC-CccHHHHHHhcccceeEEeec-cccccch--hHHHHHHHHHHHHHh
Confidence            445566666664 444443334555666666655 3333333  355566666665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.15  E-value=0.036  Score=41.16  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528          113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      ..|+..++++ +.++.+|..  ..++.++++++.+ +.+.++|.. +..++.|+.|+++.
T Consensus        53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRF  109 (177)
T ss_pred             ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhccccc
Confidence            3444444444 344444432  2334445555544 344444443 44555555555554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.14  E-value=0.47  Score=24.01  Aligned_cols=16  Identities=38%  Similarity=0.690  Sum_probs=9.4

Q ss_pred             CCcCEEeccCCCCccc
Q 023528          207 TSLETLDLSNCPKLKY  222 (281)
Q Consensus       207 ~~L~~L~l~~c~~l~~  222 (281)
                      ++|++|++++|.++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            4566666666655544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.51  E-value=1.2  Score=37.15  Aligned_cols=178  Identities=18%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             CcCceeeccCCcCccc----cc-cCCCcCCcCcEEEecCCc--ch-hccccceeecCCCCCccCCCCCCCCCCccEEEec
Q 023528           26 ATLEHLEVTHCSNLAF----LS-WNGNLPRALKYLYVKDCS--KL-ESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIW   97 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~----l~-~~~~l~~~L~~L~l~~~~--~l-~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~   97 (281)
                      ..++.++++++..-+.    +. .++.-.+ |++.+++..-  .. .+++.        .+.-+.....+||+|+..+++
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~-L~vvnfsd~ftgr~kde~~~--------~L~~Ll~aLlkcp~l~~v~LS  100 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRN-LRVVNFSDAFTGRDKDELYS--------NLVMLLKALLKCPRLQKVDLS  100 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcc-eeEeehhhhhhcccHHHHHH--------HHHHHHHHHhcCCcceeeecc
Confidence            5777888888763221    11 1455455 7776665521  00 01111        122222334458899999999


Q ss_pred             cCccccccccc----CcCCCCccEEeecCCcCCcccCCC---------------CCCCCcCeEEecCCCCccccch----
Q 023528           98 KCKNLKALPNC----IHNLTSLLHLEIRECRSLVSFPED---------------GFPTNLQSLVVDDLKISKPLFE----  154 (281)
Q Consensus        98 ~c~~l~~lp~~----~~~l~~L~~L~l~~~~~l~~l~~~---------------~~~~~L~~L~l~~~~~~~~~~~----  154 (281)
                      ++.+-...|+.    +.+-+.|+||.+++| +++.+...               ..-|.|+++.+.. +.+...+.    
T Consensus       101 DNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a  178 (388)
T COG5238         101 DNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSA  178 (388)
T ss_pred             ccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHH
Confidence            97665555443    356678999999885 55443221               1236777777665 33322221    


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC---------CCCCccEEeccCCCCCcccccc-----CCCCCCcCEEeccCC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR---------FPASLTQLGISDMPTLKCLSSV-----GENLTSLETLDLSNC  217 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---------~~~~L~~L~l~~c~~l~~l~~~-----~~~l~~L~~L~l~~c  217 (281)
                      ..+..-.+|+.+.+.+  +.+..-..         ..++|+.|++.+ +-++...+.     ....+.|++|.+..|
T Consensus       179 ~~l~sh~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         179 ALLESHENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHhhcCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch
Confidence            1222224677777776  33321100         356677777777 333321100     023344677777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 55/255 (21%), Positives = 83/255 (32%), Gaps = 55/255 (21%)

Query: 19  SSENELPATLEHLEVTHCSNLAFLSWNGN----LP------RALKYLYVKDCS------- 61
            +   L AT + LE         L          P        L+++ +           
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT 122

Query: 62  --KLESLAERIWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCI-------- 109
             +   L E + +     L + P     L   +L  L+I  C  L  LP  +        
Sbjct: 123 MQQFAGL-ETLTLARN-PLRALPASIASL--NRLRELSIRACPELTELPEPLASTDASGE 178

Query: 110 -HNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR 167
              L +L  L +     + S P       NL+SL + +  +S             L EL 
Sbjct: 179 HQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELD 235

Query: 168 IRGGCPDLVSSPRFPA------SLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKL 220
           +RG C  L +   +P        L +L + D   L  L   +   LT LE LDL  C  L
Sbjct: 236 LRG-CTALRN---YPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNL 290

Query: 221 KYFSKQGLPKSLLRL 235
                  LP  + +L
Sbjct: 291 SR-----LPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 29/149 (19%)

Query: 23  ELPATLEHL----EVTHCSNLAFLSWNGN----LP------RALKYLYVKDCS------- 61
           ELP  L       E     NL  L         LP      + LK L +++         
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224

Query: 62  --KLESLAERIWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLH 117
              L  L E + + GC  L ++P   GG     L RL +  C NL  LP  IH LT L  
Sbjct: 225 IHHLPKL-EELDLRGCTALRNYPPIFGGR--APLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 118 LEIRECRSLVSFPED-GFPTNLQSLVVDD 145
           L++R C +L   P           ++V  
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 42/195 (21%)

Query: 50  RALKYLYVKDCSKLESLAERIW-----IFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA 104
              + LY +  + L    + +           N          ++   ++     + LKA
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTGRALKA 70

Query: 105 LPNCIHNLTS--LLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISK-PLFEWGLDRF 160
             + + + T    + LE+R    L  FP+     ++LQ + +D   + + P      D  
Sbjct: 71  TADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELP------DTM 123

Query: 161 ACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL 220
                                   L  L ++  P L+ L +   +L  L  L +  CP+L
Sbjct: 124 QQFA-------------------GLETLTLARNP-LRALPASIASLNRLRELSIRACPEL 163

Query: 221 KYFSKQGLPKSLLRL 235
                  LP+ L   
Sbjct: 164 TE-----LPEPLAST 173

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 28  LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERI---------WIFGCPNL 78
           L+ L++ +    A      +L   L+ L ++ C+ L +               +  C NL
Sbjct: 208 LKSLKIRNSPLSALGPAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 79  ESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRS 125
            + P     L  T+L +L +  C NL  LP+ I  L +   + +     
Sbjct: 267 LTLPLDIHRL--TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 8/146 (5%)

Query: 102 LKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA 161
           + +  +  H+ +   +L  +   +L  + +    +  Q     D       +        
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDV--LSQWQRHYNADRNRWHSAWRQANSNNP 58

Query: 162 CLRELRIRG--GCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219
            +     R      DL+     P     L +  +P L         L+ L+ + +     
Sbjct: 59  QIETRTGRALKATADLLEDATQP-GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-G 115

Query: 220 LKYFSKQ-GLPKSLLRLGIDDCPLME 244
           L            L  L +   PL  
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRA 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 4e-10
 Identities = 52/330 (15%), Positives = 91/330 (27%), Gaps = 105/330 (31%)

Query: 16  TPFSSENELPATLEHLEVTHCSNLAFLSWNG-------NLPRALKYLYVKDCSKLESLAE 68
           +P  +E   P+ +  + +     L    +N        N+ R   YL ++    L  L  
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQA--LLELRP 149

Query: 69  RIWIF-----GC------------PNLESFPEGGL----------PST---KLTRLTIWK 98
              +      G               ++   +  +          P T    L +L    
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 99  CKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLD 158
             N  +  +   N+   +H    E R L       +   L  LV+ +++ +        +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCL--LVLLNVQNA-----KAWN 260

Query: 159 RFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP 218
            F           C  L+++ RF   +T    +   T   L      LT  E   L    
Sbjct: 261 AFN--------LSCKILLTT-RF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--- 307

Query: 219 KLKYF--SKQGLPK-----SLLRLGI-----DDCPLMEKRW-----------IKADY--- 252
            LKY     Q LP+     +  RL I      D       W           I++     
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 253 -PYTFATRYWPMITHIPCVIVNGRFVFEED 281
            P  +   +  +             VF   
Sbjct: 367 EPAEYRKMFDRL------------SVFPPS 384

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 50/236 (21%)

Query: 16  TPFSSENELPATLEHLEVTHCSNLAFLSWNGN--------LPRALKYLYVKDCSKLESLA 67
            P        A ++ +     +  A L+   +        LP  +  L + D + L SL 
Sbjct: 19  APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNN-LTSLP 77

Query: 68  ERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLV 127
                                 +L  L +   + L +LP     L  L          L 
Sbjct: 78  ALP------------------PELRTLEVSGNQ-LTSLPVLPPGLLELSIFSN----PLT 114

Query: 128 SFPEDGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLT 186
             P    P+ L  L +   +++  P           L+EL +      L S P  P+ L 
Sbjct: 115 HLPA--LPSGLCKLWIFGNQLTSLP------VLPPGLQELSVSD--NQLASLPALPSELC 164

Query: 187 QLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPL 242
           +L   +      L+S+    + L+ L +S+  +L       LP  L +L   +  L
Sbjct: 165 KLWAYNNQ----LTSLPMLPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 52/208 (25%), Positives = 75/208 (36%), Gaps = 33/208 (15%)

Query: 20  SENELPATLEHLEVTHCSN--LAFLSWNGNLPRALKYLYVKDCSKLESLAERI------W 71
               LPA    L         L  L     LP  L+ L V D  +L SL          W
Sbjct: 112 PLTHLPALPSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDN-QLASLPALPSELCKLW 167

Query: 72  IFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE 131
            +    L S P      + L  L++   + L +LP     L  L     R    L S P 
Sbjct: 168 AYNN-QLTSLPMLP---SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR----LTSLPA 218

Query: 132 DGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGI 190
              P+ L+ L+V   +++  P         + L+EL + G    L S P  P+ L  L +
Sbjct: 219 --LPSGLKELIVSGNRLTSLP------VLPSELKELMVSGN--RLTSLPMLPSGLLSLSV 268

Query: 191 SDMPTLKCLSSVGENLTSLETLDLSNCP 218
                L  L     +L+S  T++L   P
Sbjct: 269 YRNQ-LTRLPESLIHLSSETTVNLEGNP 295

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 72  IFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR------- 124
           +    NL   P         T       +  +  P        +    +R+C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 125 -----SLVSFPEDGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSS 178
                 L S PE   P +L+SLV     +++ P      +    L+ L +     +L + 
Sbjct: 77  ELNNLGLSSLPEL--PPHLESLVASCNSLTELP------ELPQSLKSLLVDN--NNLKAL 126

Query: 179 PRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID 238
              P  L  LG+S+   L+ L  +  N + L+ +D+ N   LK      LP SL  +   
Sbjct: 127 SDLPPLLEYLGVSNNQ-LEKLPELQ-NSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAG 181

Query: 239 DCPL 242
           +  L
Sbjct: 182 NNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 56/252 (22%), Positives = 90/252 (35%), Gaps = 56/252 (22%)

Query: 22  NELPATLEHL-----------EVTHCSNLAFLSWNGN-------LPRALKYLYVKDCSKL 63
           ++LP  LE+L           E+ + S L  +  + N       LP +L+++   +  +L
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN-QL 185

Query: 64  ESLAERIWIFGCPNLE----------SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLT 113
           E L E   +   P L             P+       L  +       L+ LP  + NL 
Sbjct: 186 EELPE---LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE-LQNLP 237

Query: 114 SLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGC 172
            L  +       L + P+   P +L++L V D  ++  P      +    L  L +    
Sbjct: 238 FLTTIYADNNL-LKTLPD--LPPSLEALNVRDNYLTDLP------ELPQSLTFLDVSENI 288

Query: 173 PDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL 232
                    P +L  L  S       + S+ +   SLE L++SN  KL       LP  L
Sbjct: 289 --FSGLSELPPNLYYLNASSNE----IRSLCDLPPSLEELNVSNN-KLIELPA--LPPRL 339

Query: 233 LRLGIDDCPLME 244
            RL      L E
Sbjct: 340 ERLIASFNHLAE 351

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 40/201 (19%), Positives = 63/201 (31%), Gaps = 27/201 (13%)

Query: 22  NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKD------CSKLESLAERIWIFGC 75
            +LP   + L     S   F   +  LP  L YL          C    SL E + +   
Sbjct: 270 TDLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSL-EELNVSNN 327

Query: 76  PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP 135
             L   P       +L RL       L  +P    NL  L    +     L  FP+   P
Sbjct: 328 -KLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQL---HVEYNP-LREFPDI--P 376

Query: 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPT 195
            +++ L ++      P      +    L++L +      L   P  P S+  L ++    
Sbjct: 377 ESVEDLRMNSHLAEVP------ELPQNLKQLHVETNP--LREFPDIPESVEDLRMNSERV 428

Query: 196 LKCLSSVGENLTSLETLDLSN 216
           +       E    LE     +
Sbjct: 429 VDPYEFAHETTDKLEDDVFEH 449

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 23/160 (14%)

Query: 86  LPSTKLTRLTIWKCKN--LKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVV 143
           L    + + +  +     L +LP+ +     +  LEI +   L+S PE   P +L+ L  
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLPEL--PASLEYLDA 107

Query: 144 DDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSV 202
            D ++S  P      +  A L+ L +      L   P  PA L  +   +      L+ +
Sbjct: 108 CDNRLSTLP------ELPASLKHLDVDNNQ--LTMLPELPALLEYINADNNQ----LTML 155

Query: 203 GENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPL 242
            E  TSLE L + N  +L +  +  LP+SL  L +    L
Sbjct: 156 PELPTSLEVLSVRNN-QLTFLPE--LPESLEALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 45/231 (19%), Positives = 73/231 (31%), Gaps = 51/231 (22%)

Query: 15  RTPFSSENELP-----ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER 69
             P  + NE         +        + L   S   NLP  +  L +     L SL E 
Sbjct: 40  ALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQN-ALISLPEL 98

Query: 70  IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSF 129
                                L  L     + L  LP    +L    HL++   + L   
Sbjct: 99  P------------------ASLEYLDACDNR-LSTLPELPASLK---HLDVDNNQ-LTML 135

Query: 130 PEDGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQL 188
           PE   P  L+ +  D+ +++  P      +    L  L +R     L   P  P SL  L
Sbjct: 136 PEL--PALLEYINADNNQLTMLP------ELPTSLEVLSVRNN--QLTFLPELPESLEAL 185

Query: 189 GISDMPTLKCLSSVGENLTSLET----LDLSNCPKLKYFSKQGLPKSLLRL 235
            +S    L+ L +V       E            ++ +     +P+++L L
Sbjct: 186 DVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITH-----IPENILSL 229

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 40/254 (15%)

Query: 8   SSSGSTSRTPFSSENELPATLEHLEVTHCSN-LAFLSWN-GNLPRALKYLYVKDCSKLES 65
           + + +    P   ++ +  +L+  ++ + +N + F+S     L + L+ +Y  +      
Sbjct: 407 AINRNPEMKPIKKDSRI--SLKDTQIGNLTNRITFISKAIQRLTK-LQIIYFANS-PFTY 462

Query: 66  LAERIWIFGCPNLESFPEGGLPS-----TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEI 120
               +      +  +               LT + ++ C N+  LP+ +++L  L  L I
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 121 RECR---------SLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170
              R               +D      +Q   +    + +      L +   L  L    
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 171 ----GCPDLVSSPRFPASLTQLG-----ISDMPTLKCLSSVGENLTSLETLDLSNCPKLK 221
                     ++      LT L      I ++P              +E L  S+  KLK
Sbjct: 583 NKVRHLEAFGTNV----KLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHN-KLK 632

Query: 222 YFSKQGLPKSLLRL 235
           Y       KS+  +
Sbjct: 633 YIPNIFNAKSVYVM 646

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 21/220 (9%), Positives = 55/220 (25%), Gaps = 41/220 (18%)

Query: 46  GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF-----PEGGLPSTKLTRLTIWKCK 100
                 ++ L      KL+ +           + S        G         +  +K  
Sbjct: 615 CAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 101 NLKAL-----------PNCIHNLTSLLHLEIRECRSLVSFPEDGFP---------TNLQS 140
           N   +                  + +  + +     + S PE+              L +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTT 732

Query: 141 LVVDDLKISKPLFEWGLDRFACLRELRIRG----GCPDLVSSPRFPASLTQLGISDMPTL 196
           + +   K++    ++       L  + +        P    +      L   GI      
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS---QLKAFGIRHQRDA 789

Query: 197 KCLSSVGE------NLTSLETLDLSNCPKLKYFSKQGLPK 230
           +    + +         SL  L + +   ++   ++  P+
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQ 828

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 41/212 (19%)

Query: 28  LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA------ERIWIFGCPNLESF 81
           L  ++V+H + L  L  + N  + +  L V   ++L +L         + +     L   
Sbjct: 139 LTEIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRL 196

Query: 82  PEGGLPSTKLTRLTIWKCKNLKALPNC---------IHNLTSLLHLEIRECRSLVSFPED 132
                 +  +T+L + +   L  L +C         +  LT L + +      L      
Sbjct: 197 ---NCDTNNITKLDLNQNIQLTFL-DCSSNKLTEIDVTPLTQLTYFDCSVNP-LTELDVS 251

Query: 133 GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISD 192
              + L +L      +     E  L     L   +  G              + +L ++ 
Sbjct: 252 TL-SKLTTLHCIQTDLL----EIDLTHNTQLIYFQAEGC-----------RKIKELDVTH 295

Query: 193 MPTLKCLSSVGENLTSLETLDLSNCPKLKYFS 224
              L  L         +  LDLS  PKL Y  
Sbjct: 296 NTQLYLLD-CQAA--GITELDLSQNPKLVYLY 324

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 51/233 (21%)

Query: 28  LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
           +  L+++  +NL +L+ + N    L  L V   +KL  L           L        P
Sbjct: 76  ITTLDLSQNTNLTYLACDSN---KLTNLDVTPLTKLTYL-----NCDTNKLTKLDVSQNP 127

Query: 88  S--------TKLTRLTIWKCKNLKAL---------PNCIHNLTSLLHLEIRECRSLVSFP 130
                      LT + +     L  L            +   T L  L+    + +    
Sbjct: 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELD 186

Query: 131 EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR---------GGCPDL----VS 177
                  L  L  D   I+    +  L++   L  L                 L     S
Sbjct: 187 VSQN-KLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCS 241

Query: 178 SPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPK 230
                  LT+L +S +  L  L  +  +L  +   DL++  +L YF  +G  K
Sbjct: 242 V----NPLTELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRK 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 31/199 (15%)

Query: 77  NLESFPEGGLPS--TKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDG 133
             ++  E  L S  TKL  L +        +       LT L  LEI     L S+    
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS 193

Query: 134 FP--TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPA-------- 183
                N+  L++   +    L E  +D  + +  L +R    D                 
Sbjct: 194 LKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 184 --SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK---QGLPKSLLRLGID 238
             +   + I+D   L  +  +   ++ L  L+ S   +LK         L  SL ++ + 
Sbjct: 253 KFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT-SLQKIWLH 309

Query: 239 ------DCPLME--KRWIK 249
                  CP ++   RW+ 
Sbjct: 310 TNPWDCSCPRIDYLSRWLN 328

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 33/195 (16%)

Query: 46  GNLPRALKYLYVKDCSKLESLAERIWIFG----CPNLESFPEGGLPSTKLTRLTIWKCKN 101
             L + L+  Y+ +   +       W           ++          LT + ++ C N
Sbjct: 203 MRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 102 LKALPNCIHNLTSLLHLEIRECR---------SLVSFPEDGFPTNLQSLVVDDLKISKPL 152
           L  LP  +  L  +  + +   R            +  +      +Q + +    +    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 153 FEWGLDRFACLREL-----RIRGGCPDLVSSPRFPASLTQLGISD-----MPTLKCLSSV 202
            E  L +   L  L     ++ G  P   S       L  L ++      +P     ++ 
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLNLAYNQITEIP-----ANF 372

Query: 203 GENLTSLETLDLSNC 217
                 +E L  ++ 
Sbjct: 373 CGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 28/225 (12%), Positives = 64/225 (28%), Gaps = 45/225 (20%)

Query: 28  LEHLEVTHCSNLAFL-SWNGNLPRALKYLYVKDCSKLESLAERIWIFG-------CPNLE 79
           L  +EV +C NL  L ++   LP  ++ + V    +  S  +    +           ++
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPE-MQLINVACN-RGISGEQLKDDWQALADAPVGEKIQ 308

Query: 80  -------SFPEGGLPS-----TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLV 127
                  +     + +      KL  L       L+       +   L  L +   + + 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-IT 366

Query: 128 SFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG------GCPDLVSSP 179
             P +  GF   +++L     K+      +     + +  +             +     
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 180 RFPASLTQL--------GISDMPTLKCLSSVGENLTSLETLDLSN 216
             P     +         IS  P       +    + L +++L  
Sbjct: 427 PTPFKGINVSSINLSNNQISKFP-----KELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/210 (10%), Positives = 55/210 (26%), Gaps = 25/210 (11%)

Query: 19  SSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL 78
           +     P  +             + +              D S L        I   P  
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE---DFSDLIKD----CINSDPQQ 172

Query: 79  ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNL 138
           +S  +    + K T++      N+  +   +  LT L    +        F  +      
Sbjct: 173 KSIKKSSRITLKDTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNS----PFVAENICEAW 227

Query: 139 QSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQL---------- 188
           ++   +  +  K   +   D    L ++ +   CP+L   P F  +L ++          
Sbjct: 228 ENENSEYAQQYKTE-DLKWDNLKDLTDVEV-YNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 189 -GISDMPTLKCLSSVGENLTSLETLDLSNC 217
                +       +       ++ + +   
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 41/231 (17%)

Query: 28  LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
           LE LE  +      L       + LK L ++  +  + + +   +     L +  +G   
Sbjct: 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-- 377

Query: 88  STKLTRLTIWKCK----NLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVV 143
             +L  + ++       +L+++   + NL     + +     +   P D           
Sbjct: 378 -QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN---------- 426

Query: 144 DDLKISKPLFEWGLDRFACLRELRIRGGCP-----DLVSSPRFPASLTQLGISDMP-TLK 197
                        L     LR               L    ++  ++  + +  +  + +
Sbjct: 427 --------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478

Query: 198 CLSSVGENLTSLETLDLSNCPKLKYFSKQGLP------KSLLRLGIDDCPL 242
            L        +L+ L++  C     FS++ +        SL  L +     
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCC----FSERAIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 27/210 (12%), Positives = 62/210 (29%), Gaps = 15/210 (7%)

Query: 26  ATLEHLEVTHCSNLA--FLSWNGNLPRALKYLY--VKDCSKLESLAERIWIFGCPNL--E 79
             L  + VTHC  +    +  +    +  K+L+   +  + LE L    ++     +  +
Sbjct: 154 DGLLSI-VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL--NFYMTEFAKISPK 210

Query: 80  SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGF-PTNL 138
                      L  + +   + L+ L        +L           +  PE        
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269

Query: 139 QSLVVDDLK-ISKPLFEWGLDRFACLRELRIRG---GCPDLVSSPRFPASLTQLGISDMP 194
           + L    L  +            A +R+L +        D  +  +   +L  L   ++ 
Sbjct: 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

Query: 195 TLKCLSSVGENLTSLETLDLSNCPKLKYFS 224
             + L  + +    L+ L +      +   
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGME 359

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 41/219 (18%), Positives = 71/219 (32%), Gaps = 30/219 (13%)

Query: 50  RALKYLYVKDCSKLESLAERIWIFGCPNLES--------FPEGGLPS-----TKLTRLTI 96
           R LK ++ +     +   +R+      +LE+        F   GL S      K+  L +
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 97  WKCKN-------LKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKIS 149
            +          L  L     +L   L+  + E   +     +    N +SLV   +   
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEV-LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230

Query: 150 KPLFEWGLDRFA------CLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVG 203
           + L   G  + A      C   L    G P+   +  FP  L +LG+S M     +  + 
Sbjct: 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF 289

Query: 204 ENLTSLETLDLSNCPKLKYFSKQGLPK--SLLRLGIDDC 240
                +  LDL             + K  +L  L   + 
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 31/210 (14%)

Query: 53  KYLYVKDCSK--LESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL--KALPNC 108
           +++ +  C     + L+ R      PNL S    G P   +  L            +   
Sbjct: 53  EHVTMALCYTATPDRLSRR-----FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107

Query: 109 IHNLTSLLHLEIREC----RSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA--- 161
            +NL  L  +  R        L    +     +L++L    L         GL       
Sbjct: 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARAD-DLETL---KLDKCSGFTTDGLLSIVTHC 163

Query: 162 -CLRELRIRG------GCPDLVSSPRFPASLTQLGISDMP----TLKCLSSVGENLTSLE 210
             ++ L +            L    +   SL  L          + K L ++  N  SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 211 TLDLSNCPKLKYFSKQGLPKSLLRLGIDDC 240
           ++ + +   L+         +L        
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 54/248 (21%)

Query: 28  LEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLP 87
           L  +E   C+      +N +    +  L   +   +  L          ++  F      
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL----------HIPQFYLFYDL 302

Query: 88  S------TKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECR----SLVSFPEDGFPT 136
           S       K+ R+T+   K +  +P +   +L SL  L++ E       L +    G   
Sbjct: 303 STVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 137 NLQSLVVDDLKISKPLFEWGLDRFACLRELR-----------IRGGCPDLVS-------- 177
           +LQ+LV+    +     +   +    L+ L            +   C             
Sbjct: 362 SLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419

Query: 178 ------SPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKS 231
                     P +L  L +S+      L S    L  L+ L +S   KLK      L   
Sbjct: 420 TGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRN-KLKTLPDASLFPV 474

Query: 232 LLRLGIDD 239
           LL + I  
Sbjct: 475 LLVMKISR 482

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 38/199 (19%)

Query: 28  LEHLEVTHCSNL--AFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGG 85
            + L ++ C       L+      R LK L +++    +             L  FP+  
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD--------VSGHWLSHFPDT- 182

Query: 86  LPSTKLTRLTIWKCKNL---KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP-TNLQSL 141
              T L  L I    +     AL   +    +L  L++     L            L+ L
Sbjct: 183 --YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240

Query: 142 VVDDLK--ISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCL 199
                   +   ++       +  +ELR   G  D                        L
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-------------------VPAYL 281

Query: 200 SSVGENLTSLETLDLSNCP 218
            +V    + L TL+LS   
Sbjct: 282 PAVYSVCSRLTTLNLSYAT 300

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 36/230 (15%), Positives = 59/230 (25%), Gaps = 44/230 (19%)

Query: 12  STSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIW 71
              R      N    +   + +     +  +   G    A   L                
Sbjct: 42  RWCRRKVFIGNCYAVSPATV-IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM 100

Query: 72  IFGCPNLES-------FPEGGLPS-----TKLTRLTIWKCKNL--KALPNCIHNLTSLLH 117
                 LE          +  L            L +  C+      L        +L  
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 118 LEIREC-------RSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170
           L++RE          L  FP+    T+L SL +  L             F+ L  L  R 
Sbjct: 161 LDLRESDVDDVSGHWLSHFPD--TYTSLVSLNISCLA--------SEVSFSALERLVTR- 209

Query: 171 GCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL 220
            CP          +L  L ++    L+ L+++ +    LE L        
Sbjct: 210 -CP----------NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 29/164 (17%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 77  NLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTS-----LLHLEIRECRSLVSFP 130
            ++   +      KL  LT+    N   +   C+ NL       L+  E ++ R+L  F 
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 131 EDGFPTNLQSLVVDDLKISK-PLFEWGLDRFAC---LRELRIRGGCPDLVSSPRFPASLT 186
                  L  + +D+ +++    F   + +F C   +  + + G     +          
Sbjct: 252 PSIM-EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 187 QLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPK 230
            L I      +       +L  L++L L+       F K  LP 
Sbjct: 311 SLSIIR---CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 52/204 (25%)

Query: 77  NLESFPEG---GLPSTKLTRLTIWKCKNLKALPNCI-HNLTSLLHLEIRECRSLVSFPED 132
            L   P G    L    L  L +     ++++P+   + + SL+ L++ E + L    E 
Sbjct: 134 WLTVIPSGAFEYLSK--LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 133 GFP--TNLQSLVVDDLKISKPLFEWGLDRFACLRELR-----------IRGGCPDLVSSP 179
            F    NL+ L +    I        +     L  L            IR G      S 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPG------SF 238

Query: 180 RFPASLTQLGISDMPTLKCLSSVGE----NLTSLETLDLSNCPKLKYFSK---QGLPKSL 232
              +SL +L + +      +S +       L SL  L+L++   L          L   L
Sbjct: 239 HGLSSLKKLWVMNSQ----VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLR-YL 292

Query: 233 LRLGID------DCPLME-KRWIK 249
           + L +       DC ++    W++
Sbjct: 293 VELHLHHNPWNCDCDILWLAWWLR 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 24/141 (17%)

Query: 89  TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKI 148
            +  R  + K  ++  +      L S+  L +   + + S     + TNL+ L ++  +I
Sbjct: 22  AEGIRAVLQKA-SVTDVVT-QEELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQI 78

Query: 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQL--------GISDMPTLKCLS 200
           +       L     L  L I     + ++      +LT L         ISD+  L    
Sbjct: 79  TDIS---PLSNLVKLTNLYIGT---NKITDISALQNLTNLRELYLNEDNISDISPL---- 128

Query: 201 SVGENLTSLETLDLSNCPKLK 221
               NLT + +L+L     L 
Sbjct: 129 ---ANLTKMYSLNLGANHNLS 146

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 29/182 (15%)

Query: 77  NLESFPEG---GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED 132
            L + P G    L    L  L +     ++++P    + + SL  L++ E + L    E 
Sbjct: 123 RLTTIPNGAFVYLSK--LKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 133 GFP--TNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCPDLVSSPRFP--ASLTQ 187
            F   +NL+ L +    + + P     L +   L EL + G     +    F     L +
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLT-PLIK---LDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 188 LGISDMPTLKCLSSVGE----NLTSLETLDLSNCPKLKYFSK---QGLPKSLLRLGIDDC 240
           L +        +  +      NL SL  ++L++   L          L   L R+ +   
Sbjct: 236 LWMIQSQ----IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLH-HLERIHLHHN 289

Query: 241 PL 242
           P 
Sbjct: 290 PW 291

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 53/237 (22%)

Query: 35  HCSNLAFLSWNGN-------LPRALKYLYVKDC----------SKLESLAERIWIFGCPN 77
            C                  LP + + L + +           S L ++  RI++     
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNI-SRIYVSIDVT 67

Query: 78  LESFPEG---GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDG 133
           L+         L    +T + I   +NL  +  + +  L  L  L I     L  FP+  
Sbjct: 68  LQQLESHSFYNLSK--VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLT 124

Query: 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDM 193
              +     + ++  +  +    ++ F  L                        L + + 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------TLTLKLYNN 166

Query: 194 PTLKCLSSVGE---NLTSLETLDLSNCPKLKYFSK---QGLPKSLLRLGIDDCPLME 244
                 +SV     N T L+ + L+    L    K    G+      L +    +  
Sbjct: 167 G----FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 49/274 (17%), Positives = 78/274 (28%), Gaps = 59/274 (21%)

Query: 26  ATLEHLEVTHCSN--LAFLSWNGNLPRALKYLYVKDC--SKLESLAERIWIFGCPNLESF 81
                    +     +        L   +  +   +     ++ +         PN+   
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIKSVQGIQ------YLPNVTKL 70

Query: 82  PEGGLPSTKLTRLT-IWKCKNLKALPNCIHN----------LTSLLHLEIRECR-----S 125
               L   KLT +  +   KNL  L     N          L  L  L +          
Sbjct: 71  ---FLNGNKLTDIKPLTNLKNLGWL-FLDENKIKDLSSLKDLKKLKSLSLEHNGISDING 126

Query: 126 LVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASL 185
           LV  P       L+SL + + KI+       L R   L  L +     + +S     A L
Sbjct: 127 LVHLP------QLESLYLGNNKITDIT---VLSRLTKLDTLSLED---NQISDIVPLAGL 174

Query: 186 TQL--------GISDMPTLKCLSSVGENLTSLETLDLSNCP-KLKYFSKQGLPKSLLRLG 236
           T+L         ISD+  L         L +L+ L+L +     K  + Q        + 
Sbjct: 175 TKLQNLYLSKNHISDLRALA-------GLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 237 IDDCPLMEKRWIKADYPYTFATRYWPMITHIPCV 270
             D  L+    I  D  Y      W +      V
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 38/190 (20%), Positives = 63/190 (33%), Gaps = 21/190 (11%)

Query: 77  NLESFPEGGLPSTKLTRLTIWKCKNLKALPNC--IHNLTSLLHLEIRECRSLVSFPEDGF 134
            + +     L   +L  L      NLK +       +L +L++L+I             F
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIF 146

Query: 135 P--TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFP--ASLTQLGI 190
              ++L+ L +      +            L  L +     + +S   F   +SL  L +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 191 SDMPTLKCLSS-VGENLTSLETLDLSNCPKLKYFSK---QGLPKSLLRLGID------DC 240
           S       L +   + L SL+ LD S    +    K   Q  P SL  L +        C
Sbjct: 207 SHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264

Query: 241 PLME-KRWIK 249
                 +WIK
Sbjct: 265 EHQSFLQWIK 274

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 41/187 (21%)

Query: 75  CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGF 134
                S  + G  S  L  L +     +  + +    L  L HL+ +    L    E   
Sbjct: 361 FKGCCSQSDFGTTS--LKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSV 416

Query: 135 PTNLQSLVVDDL---KISKPLFEWGLDRFACLRELRIRG---GCPDLVSSPRFPASLTQL 188
             +L++L+  D+         F    +  + L  L++ G       L        +LT L
Sbjct: 417 FLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 189 GISD-------------MPTLKCLS-----------SVGENLTSLETLDLSN------CP 218
            +S              + +L+ L+            + + LTSL+ + L        CP
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

Query: 219 KLKYFSK 225
           ++ Y S+
Sbjct: 536 RIDYLSR 542

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.44
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.31
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.29
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.99
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.98
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.98
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.93
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.93
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.92
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.25
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.7
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.41

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=6.2e-20  Score=157.26  Aligned_cols=155  Identities=26%  Similarity=0.355  Sum_probs=84.1

Q ss_pred             cCCCCCCCCCCccEEEeccCcccccccccCcC---------CCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528           80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHN---------LTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS  149 (281)
Q Consensus        80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~---------l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~  149 (281)
                      .+|..+..+++|++|++++|...+.+|..+..         +++|++|+++++ .++.+|.. ..+++|+.|++++|. +
T Consensus       141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l  218 (328)
T 4fcg_A          141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-L  218 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-C
T ss_pred             cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-C
Confidence            34444444556666666666555555554433         666666666653 33344432 445566666666533 3


Q ss_pred             cccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-
Q 023528          150 KPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK-  225 (281)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~-  225 (281)
                      +.++. .+..+++|++|++++ |.....+|.   ..++|+.|++++|+..+.+|..+..+++|++|++++|..++.+|. 
T Consensus       219 ~~l~~-~l~~l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          219 SALGP-AIHHLPKLEELDLRG-CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             CCCCG-GGGGCTTCCEEECTT-CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CcCch-hhccCCCCCEEECcC-CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            33333 355566666666666 555555444   344566666666555556654445666666666666666665554 


Q ss_pred             CCCCCCCcEEecC
Q 023528          226 QGLPKSLLRLGID  238 (281)
Q Consensus       226 ~~~~~~L~~L~l~  238 (281)
                      .+.+++|+.+++.
T Consensus       297 l~~L~~L~~l~l~  309 (328)
T 4fcg_A          297 IAQLPANCIILVP  309 (328)
T ss_dssp             GGGSCTTCEEECC
T ss_pred             HhhccCceEEeCC
Confidence            2224555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.84  E-value=1.1e-20  Score=179.34  Aligned_cols=128  Identities=15%  Similarity=-0.004  Sum_probs=62.7

Q ss_pred             CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      ++|+.|++++|.....+|. .++.+++|+.|++++ +.-...+|.   ..++|+.|++++++--+.+|..++.+++|++|
T Consensus       632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccEEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            4555666666444344443 456666666666666 433345554   34566667776643334566444666667777


Q ss_pred             eccCCCCcccccCCCCCCCCcEEecCCCchHHH----HHhhcCCCCCcccccccccccccEEE
Q 023528          213 DLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEK----RWIKADYPYTFATRYWPMITHIPCVI  271 (281)
Q Consensus       213 ~l~~c~~l~~i~~~~~~~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~  271 (281)
                      ++++|...+.+|..+.+.++....+.+++.+..    .|....+      ++|++++|++.+.
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~------~~~~~~~~~~~~~  766 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA------DGYAHHQRSHHHH  766 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------------
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc------CCCCCCCCccccC
Confidence            777655555566554444555555555543322    3455555      8899999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=1.7e-19  Score=154.60  Aligned_cols=198  Identities=23%  Similarity=0.291  Sum_probs=163.0

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA  104 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  104 (281)
                      +.++.|+++++. +..+|. ++.+++ |++|+++++.                +..+|..+..+++|++|++++| .+..
T Consensus        81 ~~l~~L~L~~n~-l~~lp~~l~~l~~-L~~L~L~~n~----------------l~~lp~~~~~l~~L~~L~Ls~n-~l~~  141 (328)
T 4fcg_A           81 PGRVALELRSVP-LPQFPDQAFRLSH-LQHMTIDAAG----------------LMELPDTMQQFAGLETLTLARN-PLRA  141 (328)
T ss_dssp             TTCCEEEEESSC-CSSCCSCGGGGTT-CSEEEEESSC----------------CCCCCSCGGGGTTCSEEEEESC-CCCC
T ss_pred             cceeEEEccCCC-chhcChhhhhCCC-CCEEECCCCC----------------ccchhHHHhccCCCCEEECCCC-cccc
Confidence            589999999877 667776 777888 9999998854                3355666667889999999996 4568


Q ss_pred             ccccCcCCCCccEEeecCCcCCcccCCCC----------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCC
Q 023528          105 LPNCIHNLTSLLHLEIRECRSLVSFPEDG----------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPD  174 (281)
Q Consensus       105 lp~~~~~l~~L~~L~l~~~~~l~~l~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (281)
                      +|..+..+++|++|++++|...+.+|...          .+++|+.|++++| .++.++. .+..+++|++|++++  +.
T Consensus       142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~--N~  217 (328)
T 4fcg_A          142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRN--SP  217 (328)
T ss_dssp             CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEES--SC
T ss_pred             CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccC--CC
Confidence            89999999999999999988888887642          2899999999995 4557765 588999999999998  45


Q ss_pred             CccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchHHHH
Q 023528          175 LVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKR  246 (281)
Q Consensus       175 ~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~  246 (281)
                      +..++.   ..++|+.|++++|+..+.+|..++.+++|++|++++|...+.+|.. +.+++|++|++++|+.+...
T Consensus       218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            666665   5679999999998888888865689999999999999988888863 34789999999999876554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.81  E-value=1.1e-18  Score=150.26  Aligned_cols=224  Identities=17%  Similarity=0.159  Sum_probs=107.3

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eeec
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWIF   73 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~   73 (281)
                      ++++.+.++++. +..+ +.....++|++|++++|. +..++.+..+++ |++|++++|. +..++..        ++++
T Consensus        44 ~~L~~L~l~~~~-i~~~-~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~-L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           44 ESITKLVVAGEK-VASI-QGIEYLTNLEYLNLNGNQ-ITDISPLSNLVK-LTNLYIGTNK-ITDISALQNLTNLRELYLN  118 (347)
T ss_dssp             TTCSEEECCSSC-CCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTT-CCEEECCSSC-CCCCGGGTTCTTCSEEECT
T ss_pred             ccccEEEEeCCc-cccc-hhhhhcCCccEEEccCCc-cccchhhhcCCc-CCEEEccCCc-ccCchHHcCCCcCCEEECc
Confidence            345555555532 4444 222223466666666553 444444555555 6666665542 2222211        4444


Q ss_pred             CCCCCccCCCCCCCCCCccEEEeccCcccccccc---------------------cCcCCCCccEEeecCCcCCcccCCC
Q 023528           74 GCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPN---------------------CIHNLTSLLHLEIRECRSLVSFPED  132 (281)
Q Consensus        74 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~---------------------~~~~l~~L~~L~l~~~~~l~~l~~~  132 (281)
                      ++. +..++. ...+++|++|++++|.....++.                     .+..+++|++|+++++ .+..++..
T Consensus       119 ~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  195 (347)
T 4fmz_A          119 EDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISPL  195 (347)
T ss_dssp             TSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGGG
T ss_pred             CCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-cccccccc
Confidence            332 222222 33344555555555433333221                     1334444444444442 22222222


Q ss_pred             CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcC
Q 023528          133 GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLE  210 (281)
Q Consensus       133 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~  210 (281)
                      ..+++|+.+++++|. +...+  .+..+++|++|++++ | .+..++.  ..++|++|++++| .++.++ .+..+++|+
T Consensus       196 ~~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~  268 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGN-N-KITDLSPLANLSQLTWLEIGTN-QISDIN-AVKDLTKLK  268 (347)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCC
T ss_pred             cCCCccceeecccCC-CCCCc--hhhcCCcCCEEEccC-C-ccCCCcchhcCCCCCEEECCCC-ccCCCh-hHhcCCCcC
Confidence            334444455444422 22222  145566666666665 3 3333332  4456777777763 555554 346666777


Q ss_pred             EEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          211 TLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       211 ~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      +|++++| .++.++....+++|++|++++|.
T Consensus       269 ~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          269 MLNVGSN-QISDISVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             EEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             EEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence            7777774 45555443335667777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=4.5e-18  Score=139.05  Aligned_cols=208  Identities=16%  Similarity=0.176  Sum_probs=161.8

Q ss_pred             CCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCC
Q 023528           12 STSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPST   89 (281)
Q Consensus        12 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~   89 (281)
                      |.+++.+ |.  ++++|++|+++++. ++.++.  ++.+++ |++|+++++..++.++.              ..+..++
T Consensus        20 c~~l~~i-p~--~~~~l~~L~l~~n~-l~~i~~~~~~~l~~-L~~L~l~~n~~l~~i~~--------------~~f~~l~   80 (239)
T 2xwt_C           20 CKDIQRI-PS--LPPSTQTLKLIETH-LRTIPSHAFSNLPN-ISRIYVSIDVTLQQLES--------------HSFYNLS   80 (239)
T ss_dssp             ECSCSSC-CC--CCTTCCEEEEESCC-CSEECTTTTTTCTT-CCEEEEECCSSCCEECT--------------TTEESCT
T ss_pred             ccCcccc-CC--CCCcccEEEEeCCc-ceEECHHHccCCCC-CcEEeCCCCCCcceeCH--------------hHcCCCc
Confidence            6668888 54  77799999999887 777765  788999 99999988653444332              1233467


Q ss_pred             CccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCCCCCCCcC---eEEecCCCCccccchhhhccCCCcc-
Q 023528           90 KLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQ---SLVVDDLKISKPLFEWGLDRFACLR-  164 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-  164 (281)
                      +|++|++++|..++.+| ..+..+++|++|+++++ .++.+|....+++|+   .|++++|..++.++...+..+++|+ 
T Consensus        81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C           81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL  159 (239)
T ss_dssp             TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred             CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhccee
Confidence            99999999866777776 46788999999999985 566677766777887   9999997678788776789999999 


Q ss_pred             eEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCC-CCcCEEeccCCCCcccccCCCCCCCCcEEecCC
Q 023528          165 ELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENL-TSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDD  239 (281)
Q Consensus       165 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l-~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~  239 (281)
                      +|++++  +.++.++.   ..++|+.|+++++..++.++... ..+ ++|++|++++ +.++.+|.. .+++|++|++.+
T Consensus       160 ~L~l~~--n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~  235 (239)
T 2xwt_C          160 TLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARN  235 (239)
T ss_dssp             EEECCS--CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTT
T ss_pred             EEEcCC--CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccC
Confidence            999998  56667765   23689999999954588887555 788 9999999999 577888765 468999999998


Q ss_pred             CchH
Q 023528          240 CPLM  243 (281)
Q Consensus       240 c~~l  243 (281)
                      +..+
T Consensus       236 ~~~l  239 (239)
T 2xwt_C          236 TWTL  239 (239)
T ss_dssp             C---
T ss_pred             ccCC
Confidence            7653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=4.6e-18  Score=152.74  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             hccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CC
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PK  230 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~  230 (281)
                      +..+++|+.|++++ +.....++.   ...+|+.|++++ +.++.+|... ..+++|++|++++| .+..++...+  ++
T Consensus       196 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~  272 (477)
T 2id5_A          196 FKRLYRLKVLEISH-WPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL  272 (477)
T ss_dssp             SCSCTTCCEEEEEC-CTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCT
T ss_pred             cccCcccceeeCCC-CccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccc
Confidence            44444555555554 433333332   122455555555 2444444222 45555555555553 2333333111  34


Q ss_pred             CCcEEecCCC
Q 023528          231 SLLRLGIDDC  240 (281)
Q Consensus       231 ~L~~L~l~~c  240 (281)
                      +|++|++.++
T Consensus       273 ~L~~L~L~~n  282 (477)
T 2id5_A          273 RLQEIQLVGG  282 (477)
T ss_dssp             TCCEEECCSS
T ss_pred             cCCEEECCCC
Confidence            4444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=2.2e-18  Score=148.42  Aligned_cols=250  Identities=18%  Similarity=0.137  Sum_probs=158.1

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eee
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWI   72 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l   72 (281)
                      +++++.|+++++ .++.+++. ...++|++|++++|. +..++.++.+++ |++|+++++. +..++..        +++
T Consensus        65 ~~~L~~L~l~~n-~i~~~~~~-~~l~~L~~L~L~~n~-i~~~~~~~~l~~-L~~L~l~~n~-i~~~~~~~~l~~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGN-QITDISPL-SNLVKLTNLYIGTNK-ITDISALQNLTN-LRELYLNEDN-ISDISPLANLTKMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSS-CCCCCGGG-TTCTTCCEEECCSSC-CCCCGGGTTCTT-CSEEECTTSC-CCCCGGGTTCTTCCEEEC
T ss_pred             cCCccEEEccCC-ccccchhh-hcCCcCCEEEccCCc-ccCchHHcCCCc-CCEEECcCCc-ccCchhhccCCceeEEEC
Confidence            356677777765 35555332 222477777777664 555565666666 6666666654 2222111        444


Q ss_pred             cCCCCCccCCC---------------------CCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC
Q 023528           73 FGCPNLESFPE---------------------GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE  131 (281)
Q Consensus        73 ~~~~~l~~l~~---------------------~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~  131 (281)
                      ++|.....++.                     ....+++|++|++++| .+..++. +..+++|+.++++++ .+..++.
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~  216 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP  216 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch
Confidence            44332222211                     0334667888888875 3445543 778899999999985 4545444


Q ss_pred             CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCc
Q 023528          132 DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSL  209 (281)
Q Consensus       132 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L  209 (281)
                      ...+++|++|++++|. ++..+.  +..+++|++|++++ + .++.++.  .+++|+.|++++| .++.++ .+..+++|
T Consensus       217 ~~~~~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L  289 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNK-ITDLSP--LANLSQLTWLEIGT-N-QISDINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQL  289 (347)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred             hhcCCcCCEEEccCCc-cCCCcc--hhcCCCCCEEECCC-C-ccCCChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCC
Confidence            5677899999999854 445543  78899999999998 4 5555554  5679999999994 777775 45788999


Q ss_pred             CEEeccCCCCcccccC--CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEeee
Q 023528          210 ETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFE  279 (281)
Q Consensus       210 ~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  279 (281)
                      ++|++++|. +...+.  .+.+++|++|++++|+.-. .            .....+.++..+.+.|+.+++
T Consensus       290 ~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~-~------------~~~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          290 NSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITD-I------------RPLASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             SEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCC-C------------GGGGGCTTCSEESSSCC----
T ss_pred             CEEECcCCc-CCCcChhHhhccccCCEEEccCCcccc-c------------cChhhhhccceeehhhhcccC
Confidence            999999974 444332  2236889999999987321 1            113446677777777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=1.3e-17  Score=142.79  Aligned_cols=172  Identities=11%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             CCCccEEEeccCccc--ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528           88 STKLTRLTIWKCKNL--KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE  165 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  165 (281)
                      +++|++|++++|..-  ...+..+..+++|++|+++++ .++.+|.. ..++|+.|++++|. ++..+...+..+++|++
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGGGTTCTTCCE
T ss_pred             CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence            455555555554321  122344556666666666653 34444433 23678888888754 44444446778888888


Q ss_pred             EEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCC--------CCCCc
Q 023528          166 LRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGL--------PKSLL  233 (281)
Q Consensus       166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~L~  233 (281)
                      |++++  +.+..++.    ..++|+.|++++ +.++.+|..+..+++|++|++++| .++.++...+        ..+++
T Consensus       221 L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~  296 (330)
T 1xku_A          221 LGLSF--NSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYS  296 (330)
T ss_dssp             EECCS--SCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCS
T ss_pred             EECCC--CcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCccccccccccc
Confidence            88887  34444432    456888889888 477788855578888889999884 5777665332        25678


Q ss_pred             EEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCE
Q 023528          234 RLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGR  275 (281)
Q Consensus       234 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  275 (281)
                      .+++.+++....... +        ..+.....+..+.+.++
T Consensus       297 ~l~l~~N~~~~~~i~-~--------~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          297 GVSLFSNPVQYWEIQ-P--------STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             EEECCSSSSCGGGSC-G--------GGGTTCCCGGGEEC---
T ss_pred             ceEeecCcccccccC-c--------cccccccceeEEEeccc
Confidence            888888774221111 1        23455666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=2.5e-18  Score=163.08  Aligned_cols=166  Identities=15%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------e
Q 023528            3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------I   70 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L   70 (281)
                      +++.|+++++.--..+|+....  .++|++|++++|.....+|. ++.+++ |++|++++|...+.+|..         +
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            4556666654422233222222  24566666665542223332 444555 555555555433233222         4


Q ss_pred             eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528           71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS  149 (281)
Q Consensus        71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~  149 (281)
                      +++++.....+|..+..+++|++|++++|...+.+|..+..+++|++|+++++.....+|.. +.+++|+.|++++|...
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            44444333344444444445555555554433344444444455555555443333233322 33444444444443333


Q ss_pred             cccchhhhccCCCcceEEeec
Q 023528          150 KPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      ..+|. .+..+++|+.|++++
T Consensus       528 ~~~p~-~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          528 GNIPA-ELGDCRSLIWLDLNT  547 (768)
T ss_dssp             EECCG-GGGGCTTCCEEECCS
T ss_pred             CcCCH-HHcCCCCCCEEECCC
Confidence            33332 344444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=1.9e-17  Score=148.73  Aligned_cols=148  Identities=19%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             CCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528           86 LPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFAC  162 (281)
Q Consensus        86 ~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  162 (281)
                      ..+++|++|++++| .+..+| ..+..+++|+.|++.++ .+..++..  ..+++|+.|++++|.....++.. .....+
T Consensus       149 ~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~  225 (477)
T 2id5_A          149 SGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLN  225 (477)
T ss_dssp             TTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCC
T ss_pred             cCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcc-cccCcc
Confidence            33445555555543 222222 22344444444444442 22222221  34456666666655544444332 222235


Q ss_pred             cceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC--CCCCCcEE
Q 023528          163 LRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRL  235 (281)
Q Consensus       163 L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L  235 (281)
                      |+.|++++  +.++.++.    ..++|+.|++++ +.++.++... ..+++|++|++++| .+..+....  .+++|++|
T Consensus       226 L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          226 LTSLSITH--CNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             CSEEEEES--SCCCSCCHHHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEE
T ss_pred             ccEEECcC--CcccccCHHHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEE
Confidence            55555555  23334432    334555555555 3344443332 44455555555553 233332211  13445555


Q ss_pred             ecCCC
Q 023528          236 GIDDC  240 (281)
Q Consensus       236 ~l~~c  240 (281)
                      +++++
T Consensus       302 ~L~~N  306 (477)
T 2id5_A          302 NVSGN  306 (477)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=8.8e-19  Score=149.13  Aligned_cols=234  Identities=13%  Similarity=0.054  Sum_probs=121.4

Q ss_pred             cceeecccCCCCCc--ccCCCCCccCcCceeeccCCcCcc-cccc-CCCcCCcCcEEEecCCcchhccccc---------
Q 023528            3 QDISRSSSGSTSRT--PFSSENELPATLEHLEVTHCSNLA-FLSW-NGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         3 ~l~~l~~~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~-~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      +++.|+++++.--.  .+|+...-.++|++|+++++..+. .+|. ++.+++ |++|+++++...+.+|..         
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-CSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC-CCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            46666776644222  342222222577777777533233 4443 666777 777777776543344432         


Q ss_pred             eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCC-CccEEeecCCcCCcccCCC-CCCCCcCeEEecCCC
Q 023528           70 IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLT-SLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLK  147 (281)
Q Consensus        70 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~  147 (281)
                      ++++++.....+|..+..+++|++|++++|.....+|..+..++ .|++|+++++.....+|.. ..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            55555433334455555556666666666543335555555555 6666666654322233322 2222 6666666643


Q ss_pred             CccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCccccc
Q 023528          148 ISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i~  224 (281)
                       ++......+..+++|+.|++++ +.-...++.  ..++|++|+++++ .+. .+|..+..+++|++|++++|.-.+.+|
T Consensus       209 -l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          209 -LEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             -EEECCGGGCCTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             -ccCcCCHHHhcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence             2222223455666666666665 322222222  3456666666663 343 555333666666666666654333555


Q ss_pred             CCCCCCCCcEEecCCCc
Q 023528          225 KQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       225 ~~~~~~~L~~L~l~~c~  241 (281)
                      ..+.+++|+.+++.+++
T Consensus       286 ~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSTTGGGSCGGGTCSSS
T ss_pred             CCccccccChHHhcCCC
Confidence            54445566666666555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=8.3e-17  Score=143.67  Aligned_cols=215  Identities=19%  Similarity=0.246  Sum_probs=123.7

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES   80 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~   80 (281)
                      .+++.+ |. .+++++++|+++++. +..++  .++.+++ |++|+++++. +..++..          |+++++. +..
T Consensus        64 ~~l~~i-P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~  137 (452)
T 3zyi_A           64 RGLSEV-PQ-GIPSNTRYLNLMENN-IQMIQADTFRHLHH-LEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTV  137 (452)
T ss_dssp             SCCSSC-CS-CCCTTCSEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSB
T ss_pred             CCcCcc-CC-CCCCCccEEECcCCc-CceECHHHcCCCCC-CCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCc
Confidence            456777 53 355799999999886 66553  3788999 9999999875 3333211          5555542 344


Q ss_pred             CCCC-CCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528           81 FPEG-GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG  156 (281)
Q Consensus        81 l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~  156 (281)
                      ++.. +..+++|++|++++|. +..+| ..+..+++|++|+++++..+..++..  ..+++|+.|++++| .++.++  .
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~--~  213 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP--N  213 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC--C
T ss_pred             cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc--c
Confidence            4433 3445666666666643 33443 34556666666666665555555543  34566666666663 333444  3


Q ss_pred             hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P  229 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~  229 (281)
                      +..+++|++|++++  +.+..++.    ..++|+.|++++ +.+..++... ..+++|++|++++| +++.++...+  +
T Consensus       214 ~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  289 (452)
T 3zyi_A          214 LTPLVGLEELEMSG--NHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL  289 (452)
T ss_dssp             CTTCTTCCEEECTT--SCCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred             ccccccccEEECcC--CcCcccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence            55566666666665  33333321    344666666666 3455443333 56666666666663 4555554322  4


Q ss_pred             CCCcEEecCCCc
Q 023528          230 KSLLRLGIDDCP  241 (281)
Q Consensus       230 ~~L~~L~l~~c~  241 (281)
                      ++|++|++.+++
T Consensus       290 ~~L~~L~L~~Np  301 (452)
T 3zyi_A          290 RYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEccCCC
Confidence            566666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=5.5e-17  Score=142.04  Aligned_cols=99  Identities=22%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccCCCCCCcCE
Q 023528          136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVGENLTSLET  211 (281)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  211 (281)
                      ++|+.|++++|. ++..+  .+..+++|++|++++ + .+..+ +.   ..++|+.|++++ +.++.+|.....+++|++
T Consensus       226 ~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~  299 (390)
T 3o6n_A          226 VELTILKLQHNN-LTDTA--WLLNYPGLVEVDLSY-N-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKV  299 (390)
T ss_dssp             SSCCEEECCSSC-CCCCG--GGGGCTTCSEEECCS-S-CCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCE
T ss_pred             ccccEEECCCCC-CcccH--HHcCCCCccEEECCC-C-cCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCE
Confidence            345555555532 22222  355566666666665 3 33322 22   344566666665 345555533345555666


Q ss_pred             EeccCCCCcccccCC-CCCCCCcEEecCCCc
Q 023528          212 LDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCP  241 (281)
Q Consensus       212 L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~  241 (281)
                      |++++| .+..++.. +.+++|++|++.+|+
T Consensus       300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             EECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EECCCC-cceecCccccccCcCCEEECCCCc
Confidence            666554 34444331 113445555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.76  E-value=6.9e-17  Score=144.02  Aligned_cols=58  Identities=29%  Similarity=0.308  Sum_probs=26.0

Q ss_pred             hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528          156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN  216 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~  216 (281)
                      .+..+++|++|++++ + .+..+ +.   ..++|+.|+++++ .++.++... +.+++|++|++++
T Consensus       294 ~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQ-N-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             TTTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS
T ss_pred             hcccCCCCCEEECCC-C-cccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC
Confidence            345555555555555 2 22222 11   2344555555552 344332222 4445555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=3.5e-17  Score=140.23  Aligned_cols=247  Identities=14%  Similarity=0.158  Sum_probs=144.9

Q ss_pred             ceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhcc-ccc---------ee
Q 023528            4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESL-AER---------IW   71 (281)
Q Consensus         4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~-p~~---------L~   71 (281)
                      ++.+.++++ .++.+ |.. ++++|++|+++++. +..++.  ++.+++ |++|+++++. +..+ |..         ++
T Consensus        35 l~~l~~~~~-~l~~i-p~~-~~~~l~~L~l~~n~-i~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           35 LRVVQCSDL-GLKAV-PKE-ISPDTTLLDLQNND-ISELRKDDFKGLQH-LYALVLVNNK-ISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             TTEEECCSS-CCSSC-CSC-CCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred             CCEEECCCC-Ccccc-CCC-CCCCCeEEECCCCc-CCccCHhHhhCCCC-CcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence            445555543 36666 433 34577777777765 555533  667777 7777777765 2222 221         66


Q ss_pred             ecCCCCCccCCCCCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcC------------------------C
Q 023528           72 IFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRS------------------------L  126 (281)
Q Consensus        72 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~------------------------l  126 (281)
                      ++++ .+..+|....  ++|++|++++| .+..+|. .+..+++|++|+++++..                        +
T Consensus       109 L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL  184 (332)
T ss_dssp             CCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred             CCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence            6554 3445555444  57777777774 3444443 356677777777766422                        1


Q ss_pred             cccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCcccccc
Q 023528          127 VSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSV  202 (281)
Q Consensus       127 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~  202 (281)
                      +.+|. ...++|+.|++++| .++..+...+..+++|++|++++  +.+..++.    ..++|+.|++++ +.++.+|..
T Consensus       185 ~~l~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~  259 (332)
T 2ft3_A          185 TGIPK-DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGH--NQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAG  259 (332)
T ss_dssp             SSCCS-SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCS--SCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTT
T ss_pred             CccCc-cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCC--CcCCcCChhHhhCCCCCCEEECCC-CcCeecChh
Confidence            11221 12256777777764 34444434577788888888887  44555443    456888888888 577788855


Q ss_pred             CCCCCCcCEEeccCCCCcccccCCCC--------CCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECC
Q 023528          203 GENLTSLETLDLSNCPKLKYFSKQGL--------PKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNG  274 (281)
Q Consensus       203 ~~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  274 (281)
                      +..+++|++|+++++ .++.++...+        ...|+.|++.+++........         ..+..+.++..+.+.+
T Consensus       260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---------~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---------ATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---------GGGTTBCCSTTEEC--
T ss_pred             hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---------ccccccchhhhhhccc
Confidence            578888888888884 5666665322        346788888887742111111         2244456666666655


Q ss_pred             E
Q 023528          275 R  275 (281)
Q Consensus       275 ~  275 (281)
                      +
T Consensus       330 n  330 (332)
T 2ft3_A          330 Y  330 (332)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=1.7e-16  Score=141.18  Aligned_cols=215  Identities=17%  Similarity=0.242  Sum_probs=161.5

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES   80 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~   80 (281)
                      .+++.+ |. .++++++.|+++++. +..++  .++.+++ |++|+++++. +..++..          |+++++ .+..
T Consensus        53 ~~l~~i-P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~  126 (440)
T 3zyj_A           53 KNLREV-PD-GISTNTRLLNLHENQ-IQIIKVNSFKHLRH-LEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTT  126 (440)
T ss_dssp             CCCSSC-CS-CCCTTCSEEECCSCC-CCEECTTTTSSCSS-CCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSS
T ss_pred             CCcCcC-CC-CCCCCCcEEEccCCc-CCeeCHHHhhCCCC-CCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCe
Confidence            457777 54 345699999999877 66554  3788999 9999999875 4333321          777776 4566


Q ss_pred             CCC-CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528           81 FPE-GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG  156 (281)
Q Consensus        81 l~~-~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~  156 (281)
                      ++. .+..+++|++|++++|. +..+| ..+..+++|++|+++++..+..++..  ..+++|+.|++++| .++.++  .
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~--~  202 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP--N  202 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC--C
T ss_pred             eCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc--c
Confidence            665 45668899999999964 55555 46788999999999988778777764  56789999999985 556666  4


Q ss_pred             hccCCCcceEEeecCCCCCccCC-C---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C
Q 023528          157 LDRFACLRELRIRGGCPDLVSSP-R---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P  229 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~  229 (281)
                      +..+++|++|++++ + .+..++ .   ..++|+.|++++ +.++.++... ..+++|++|++++| +++.++...+  +
T Consensus       203 ~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  278 (440)
T 3zyj_A          203 LTPLIKLDELDLSG-N-HLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL  278 (440)
T ss_dssp             CTTCSSCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred             cCCCcccCEEECCC-C-ccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence            78889999999998 4 555553 2   567899999999 5777776455 88999999999995 6777776433  6


Q ss_pred             CCCcEEecCCCc
Q 023528          230 KSLLRLGIDDCP  241 (281)
Q Consensus       230 ~~L~~L~l~~c~  241 (281)
                      ++|+.|++.+++
T Consensus       279 ~~L~~L~L~~Np  290 (440)
T 3zyj_A          279 HHLERIHLHHNP  290 (440)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEcCCCC
Confidence            789999998755

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=1.3e-16  Score=142.44  Aligned_cols=206  Identities=19%  Similarity=0.222  Sum_probs=159.7

Q ss_pred             ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc--------
Q 023528            2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER--------   69 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~--------   69 (281)
                      ++++.|+++++ .++.+++ ..+.  ++|++|+++++. +..++.  +..+++ |++|+++++. +..+|..        
T Consensus        75 ~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQA-DTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLAS-LNTLELFDNW-LTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CSBCCTTTSSSCTTC
T ss_pred             CCccEEECcCC-cCceECH-HHcCCCCCCCEEECCCCc-cCCcChhhccCccc-CCEEECCCCc-CCccChhhhcccCCC
Confidence            35778888875 4776633 3332  699999999886 665543  788899 9999999975 4454432        


Q ss_pred             --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528           70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD  145 (281)
Q Consensus        70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  145 (281)
                        |+++++. +..++. .+..+++|++|++++|..++.++. .+..+++|++|+++++ .+..++....+++|+.|++++
T Consensus       150 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          150 RELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSG  227 (452)
T ss_dssp             CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTT
T ss_pred             CEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcC
Confidence              7777764 455554 566789999999999988888874 5789999999999985 677778778889999999999


Q ss_pred             CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      | .++.++...+..+++|+.|++++  +.+..++.    ..++|+.|++++ +.++.++... ..+++|++|++++++
T Consensus       228 N-~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          228 N-HFPEIRPGSFHGLSSLKKLWVMN--SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             S-CCSEECGGGGTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             C-cCcccCcccccCccCCCEEEeCC--CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence            5 45555555789999999999998  45554432    457999999999 5888888665 889999999999864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.75  E-value=2.7e-17  Score=152.82  Aligned_cols=231  Identities=14%  Similarity=0.084  Sum_probs=125.7

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc-CCCc------CCcCcEEEecCCcchhcccc--c
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW-NGNL------PRALKYLYVKDCSKLESLAE--R   69 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~-~~~l------~~~L~~L~l~~~~~l~~~p~--~   69 (281)
                      +++|+.|+++++.-.+.+|....-.++|++|++++|..+.  .+|. ++.+      ++ |++|++++|.. ..+|.  .
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~n~l-~~ip~~~~  325 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNL-KTFPVETS  325 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEECCSSCC-SSCCCHHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEECCCCcC-CccCchhh
Confidence            4677788888776556663322233577777777775333  2443 2222      55 66666666542 24444  2


Q ss_pred             ---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCC-c------------------------
Q 023528           70 ---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTS-L------------------------  115 (281)
Q Consensus        70 ---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~-L------------------------  115 (281)
                               ++++++.....+| .+..+++|++|++++| .+..+|..+..+++ |                        
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence                     4554443222444 3334444555555443 22244444444444 4                        


Q ss_pred             -cEEeecCCcCCcccCCC-C-------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CC---
Q 023528          116 -LHLEIRECRSLVSFPED-G-------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FP---  182 (281)
Q Consensus       116 -~~L~l~~~~~l~~l~~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~---  182 (281)
                       ++|+++++......|.. .       ..++|+.|++++| .++.++...+..+++|++|++++  +.+..+|. ..   
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~--N~l~~i~~~~~~~~  480 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG--NMLTEIPKNSLKDE  480 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS--SCCSBCCSSSSEET
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC--CCCCCcCHHHhccc
Confidence             44444443222222211 1       2346666666663 33355554455677777777776  44556655 11   


Q ss_pred             C-------CccEEeccCCCCCccccccCC--CCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCC
Q 023528          183 A-------SLTQLGISDMPTLKCLSSVGE--NLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDC  240 (281)
Q Consensus       183 ~-------~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c  240 (281)
                      .       +|+.|++++ +.++.+|..+.  .+++|++|++++| .++.+|. ...+++|++|+++++
T Consensus       481 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             TEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSC
T ss_pred             cccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCC
Confidence            1       788888887 46667775554  7788888888874 4555654 223567777777543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=1e-16  Score=143.00  Aligned_cols=58  Identities=21%  Similarity=0.144  Sum_probs=28.1

Q ss_pred             CCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCc
Q 023528          182 PASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       182 ~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~  241 (281)
                      .++|+.|++++ +.++.++... ..+++|++|++++| .++.++..  +.+++|++|++++|.
T Consensus       298 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~  358 (455)
T 3v47_A          298 FTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH  358 (455)
T ss_dssp             CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc
Confidence            34566666665 3444443222 55566666666654 33433221  124455555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=1.2e-16  Score=133.91  Aligned_cols=204  Identities=19%  Similarity=0.192  Sum_probs=149.8

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      .+++.+ |.+ ++++|++|+++++. +..++.  ++.+++ |++|+++++. +..+              .+..+..+++
T Consensus        21 ~~l~~i-p~~-~~~~l~~L~l~~n~-i~~~~~~~~~~~~~-L~~L~l~~n~-l~~~--------------~~~~~~~l~~   81 (285)
T 1ozn_A           21 QGLQAV-PVG-IPAASQRIFLHGNR-ISHVPAASFRACRN-LTILWLHSNV-LARI--------------DAAAFTGLAL   81 (285)
T ss_dssp             SCCSSC-CTT-CCTTCSEEECTTSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEE--------------CTTTTTTCTT
T ss_pred             CCcccC-CcC-CCCCceEEEeeCCc-CCccCHHHcccCCC-CCEEECCCCc-ccee--------------CHhhcCCccC
Confidence            457778 543 56799999999887 666654  788999 9999998864 2221              1334455779


Q ss_pred             ccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           91 LTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        91 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      |++|++++|..++.+ |..+..+++|++|+++++ .+..++.  ...+++|++|++++| .++.++...+..+++|++|+
T Consensus        82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEE
Confidence            999999997656666 567888999999999985 4444433  256789999999985 45556555678899999999


Q ss_pred             eecCCCCCccCCC----CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccC--CCCCCCCcEEecCCC
Q 023528          168 IRGGCPDLVSSPR----FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDC  240 (281)
Q Consensus       168 l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c  240 (281)
                      +++  +.++.++.    ..++|+.|+++++ .+..+ |..+..+++|++|++++| .++.++.  ...+++|++|++.++
T Consensus       160 l~~--n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          160 LHG--NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCS--SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             CCC--CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence            998  45655554    4578999999994 66665 433388899999999995 5666664  233678999999886


Q ss_pred             c
Q 023528          241 P  241 (281)
Q Consensus       241 ~  241 (281)
                      +
T Consensus       236 ~  236 (285)
T 1ozn_A          236 P  236 (285)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.74  E-value=7.2e-17  Score=149.02  Aligned_cols=228  Identities=19%  Similarity=0.088  Sum_probs=145.8

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhcc---ccc---------e
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESL---AER---------I   70 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~---p~~---------L   70 (281)
                      +++.|++++|. ++.+ |.. ..++|++|++++|.....+ .++.+++ |++|+++++.. ..+   |..         +
T Consensus       308 ~L~~L~l~~n~-l~~l-p~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~-L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          308 KWQSLSIIRCQ-LKQF-PTL-DLPFLKSLTLTMNKGSISF-KKVALPS-LSYLDLSRNAL-SFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             CCSEEEEESCC-CSSC-CCC-CCSSCCEEEEESCSSCEEC-CCCCCTT-CCEEECCSSCE-EEEEECCHHHHCCSCCCEE
T ss_pred             cCCEEEccccc-Cccc-ccC-CCCccceeeccCCcCccch-hhccCCC-CCEEECcCCcc-CCCcchhhhhccCCcccEe
Confidence            44555555544 2445 222 2235555555555433333 3445666 66666666542 111   111         6


Q ss_pred             eecCCCCCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCC
Q 023528           71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKI  148 (281)
Q Consensus        71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~  148 (281)
                      +++++. +..++..+..+++|++|++++|......| ..+..+++|++|+++++......+.. ..+++|++|++++|..
T Consensus       382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  460 (606)
T 3vq2_A          382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF  460 (606)
T ss_dssp             ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence            666654 55566667778888888888875544444 46778888999998886544434432 5678899999988654


Q ss_pred             ccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccc
Q 023528          149 SKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYF  223 (281)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i  223 (281)
                      ........+..+++|++|++++ | .+..+ +.   ..++|++|++++| .+..+ |..+..+++|++|++++| +++.+
T Consensus       461 ~~~~~~~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~  536 (606)
T 3vq2_A          461 KDNTLSNVFANTTNLTFLDLSK-C-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETS  536 (606)
T ss_dssp             GGGEECSCCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCE
T ss_pred             CCcchHHhhccCCCCCEEECCC-C-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCccc
Confidence            4433333678889999999998 5 44443 33   4678999999995 56555 534488899999999996 57788


Q ss_pred             cCC--CCCCCCcEEecCCCc
Q 023528          224 SKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       224 ~~~--~~~~~L~~L~l~~c~  241 (281)
                      |..  .++.+|++|++.+++
T Consensus       537 p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          537 KGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             ESCGGGSCTTCCEEECCSCC
T ss_pred             CHhHhhhcccCcEEEccCCC
Confidence            764  223469999998755

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=5.1e-17  Score=150.01  Aligned_cols=231  Identities=17%  Similarity=0.071  Sum_probs=131.4

Q ss_pred             cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------e
Q 023528            3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------I   70 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L   70 (281)
                      +++.++++++ .++.+ +...+  .++|++|+++++. +..+|. ++.+++ |++|+++++......|..         +
T Consensus       255 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKH-YFFNI-SSNTFHCFSGLQELDLTATH-LSELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTC-CCSSC-CTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             ceeEEEeecC-ccCcc-CHHHhccccCCCEEeccCCc-cCCCChhhccccc-CCEEECccCCcCcCchhhhhccCcCCEE
Confidence            4667777764 35666 32222  2588888888775 556654 667777 888888876532222211         6


Q ss_pred             eecCCCCCccCCCC-CCCCCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecC
Q 023528           71 WIFGCPNLESFPEG-GLPSTKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDD  145 (281)
Q Consensus        71 ~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~  145 (281)
                      +++++.....++.. +..+++|++|++++|......  +..+..+++|++|+++++. +..++..  ..+++|+.|++++
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTT
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCC
Confidence            66666544445443 555677777777775433222  4556677777777777643 3333222  4566777777776


Q ss_pred             CCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCcc--ccc--cCCCCCCcCEEeccCCC
Q 023528          146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKC--LSS--VGENLTSLETLDLSNCP  218 (281)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~--l~~--~~~~l~~L~~L~l~~c~  218 (281)
                      |......+...+..+++|++|++++ |.-....+.   ..++|++|+++++ .+..  ++.  .+..+++|++|++++| 
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-  486 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-  486 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTT-CCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-
T ss_pred             CcCCCcccchhhhCcccCCEEECCC-CccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-
Confidence            5443333333456677777777776 432222222   3456777777774 3332  221  1256667777777765 


Q ss_pred             CcccccCC--CCCCCCcEEecCCCc
Q 023528          219 KLKYFSKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       219 ~l~~i~~~--~~~~~L~~L~l~~c~  241 (281)
                      .+..++..  +.+++|++|+++++.
T Consensus       487 ~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          487 DLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccCccChhhhccccCCCEEECCCCc
Confidence            34444321  224667777776664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=7.9e-17  Score=141.02  Aligned_cols=77  Identities=19%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             CCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccCCC-CCCCCcEEe
Q 023528          161 ACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSKQG-LPKSLLRLG  236 (281)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~L~~L~  236 (281)
                      ++|+.|++++  +.+...+.  ..++|++|+++++ .++.+ |..+..+++|++|++++| .++.++... .+++|++|+
T Consensus       226 ~~L~~L~l~~--n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          226 VELTILKLQH--NNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SSCCEEECCS--SCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEE
T ss_pred             ccccEEECCC--CCCcccHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEE
Confidence            3455555554  22222222  3345555665552 34433 212255555556666553 344444321 245555555


Q ss_pred             cCCCc
Q 023528          237 IDDCP  241 (281)
Q Consensus       237 l~~c~  241 (281)
                      +++|.
T Consensus       302 L~~n~  306 (390)
T 3o6n_A          302 LSHNH  306 (390)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.2e-16  Score=147.60  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             hhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL  232 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L  232 (281)
                      .+..+++|+.|++++  +.+..++.   ..++|+.|++++ +.+..+|..+..+++|++|++++| .+..++. ..+++|
T Consensus       273 ~~~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L  347 (597)
T 3oja_B          273 PFVKMQRLERLYISN--NRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTL  347 (597)
T ss_dssp             GGTTCSSCCEEECTT--SCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCC
T ss_pred             HhcCccCCCEEECCC--CCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCC
Confidence            344445555555554  23333332   234555555555 344455533345555556666553 3333332 224566


Q ss_pred             cEEecCCCc
Q 023528          233 LRLGIDDCP  241 (281)
Q Consensus       233 ~~L~l~~c~  241 (281)
                      ++|++++++
T Consensus       348 ~~L~l~~N~  356 (597)
T 3oja_B          348 KNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeeCCC
Confidence            777776655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.74  E-value=2.2e-16  Score=140.42  Aligned_cols=206  Identities=19%  Similarity=0.230  Sum_probs=160.5

Q ss_pred             ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc--------
Q 023528            2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER--------   69 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~--------   69 (281)
                      +.++.|+++++. ++.+ +...+.  ++|++|++++|. +..++  .+..+++ |++|+++++. +..++..        
T Consensus        64 ~~l~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQ-IQII-KVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLAN-LNTLELFDNR-LTTIPNGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCC-CCEE-CTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSS-CCEEECCSSC-CSSCCTTTSCSCSSC
T ss_pred             CCCcEEEccCCc-CCee-CHHHhhCCCCCCEEECCCCc-CCccChhhccCCcc-CCEEECCCCc-CCeeCHhHhhccccC
Confidence            356778888754 7777 333333  699999999886 66555  3788999 9999999974 5555432        


Q ss_pred             --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528           70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD  145 (281)
Q Consensus        70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  145 (281)
                        |+++++. +..++. .+..+++|++|++++|..+..++. .+..+++|++|+++++ .++.+|....+++|+.|++++
T Consensus       139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTT
T ss_pred             ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCC
Confidence              7777764 445554 566789999999999888888874 5789999999999985 677888778889999999999


Q ss_pred             CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      | .++.++...+..+++|+.|++++  +.+..++.    ..++|+.|++++ +.++.++... ..+++|++|++++++
T Consensus       217 N-~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          217 N-HLSAIRPGSFQGLMHLQKLWMIQ--SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECTT--CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             C-ccCccChhhhccCccCCEEECCC--CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence            6 55555555789999999999998  45555543    467899999999 6888888666 889999999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.74  E-value=2.8e-16  Score=145.07  Aligned_cols=258  Identities=16%  Similarity=0.059  Sum_probs=176.4

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccc-c-cCCCcCCcCcEEEecCCcchhccccc---------
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFL-S-WNGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      +++++.|+++++. ++.+|....-.++|++|++++|. +..+ + .++.+++ |++|+++++.....+|..         
T Consensus       277 l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          277 FSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             CTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccCCCEEeccCCc-cCCCChhhcccccCCEEECccCC-cCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCC
Confidence            4678899999864 77884433333799999999887 5544 3 3777888 999999998655454432         


Q ss_pred             -eeecCCCCCccC--CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEec
Q 023528           70 -IWIFGCPNLESF--PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVD  144 (281)
Q Consensus        70 -L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~  144 (281)
                       ++++++......  +.....+++|++|++++|......|..+..+++|++|+++++......+.  ...+++|+.|+++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  433 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS  433 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence             777766433222  55677788999999999765555567888899999999998643333332  3567899999999


Q ss_pred             CCCCccccchhhhccCCCcceEEeecCCCCCcc--CCC-----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528          145 DLKISKPLFEWGLDRFACLRELRIRGGCPDLVS--SPR-----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN  216 (281)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~-----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~  216 (281)
                      +|.. ...+...+..+++|++|++++ +. +..  ++.     ..++|+.|++++| .++.++... +.+++|++|++++
T Consensus       434 ~n~l-~~~~~~~~~~l~~L~~L~L~~-n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          434 HSLL-DISSEQLFDGLPALQHLNLQG-NH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             TCCC-BTTCTTTTTTCTTCCEEECTT-CB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcc-CCcCHHHHhCCCCCCEEECCC-CC-CCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCC
Confidence            8654 333334678899999999998 43 332  221     4578999999995 566654344 8899999999999


Q ss_pred             CCCcccccC--CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528          217 CPKLKYFSK--QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF  278 (281)
Q Consensus       217 c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (281)
                      | .+..++.  ...+++| +|+++++..-....           ..+..+..+..+.+.|+.+.
T Consensus       510 N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          510 N-RLTSSSIEALSHLKGI-YLNLASNHISIILP-----------SLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             S-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCG-----------GGHHHHHTSSEEECTTCCEE
T ss_pred             C-ccCcCChhHhCccccc-EEECcCCcccccCH-----------hhcccCCCCCEEeCCCCCcc
Confidence            6 4544433  2235778 89998886321100           11344567788888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=8.8e-16  Score=131.36  Aligned_cols=221  Identities=15%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             ceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------eee
Q 023528            4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------IWI   72 (281)
Q Consensus         4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l   72 (281)
                      ++.+.+++. .++.+ |. .+++.+++|+++++. +..++.  ++.+++ |++|+++++......|..         +++
T Consensus        33 l~~l~~~~~-~l~~l-p~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           33 LRVVQCSDL-GLEKV-PK-DLPPDTALLDLQNNK-ITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TTEEECTTS-CCCSC-CC-SCCTTCCEEECCSSC-CCCBCTTTTTTCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CeEEEecCC-Ccccc-Cc-cCCCCCeEEECCCCc-CCEeChhhhccCCC-CCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            445555543 46667 43 345688888888876 665554  777888 888888886522211221         444


Q ss_pred             cCCCCCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCc--ccCC-CCCCCCcCeEEecCCCC
Q 023528           73 FGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLV--SFPE-DGFPTNLQSLVVDDLKI  148 (281)
Q Consensus        73 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~--~l~~-~~~~~~L~~L~l~~~~~  148 (281)
                      +++ .+..+|....  ++|++|++++|. +..++ ..+..+++|++|+++++....  ..+. ...+++|+.|++++| .
T Consensus       108 s~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~  182 (330)
T 1xku_A          108 SKN-QLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-N  182 (330)
T ss_dssp             CSS-CCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-C
T ss_pred             CCC-cCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-c
Confidence            443 2334444333  356666666543 22332 334556666666665532211  1111 133556666666653 2


Q ss_pred             ccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccc
Q 023528          149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYF  223 (281)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i  223 (281)
                      ++.++..   ..++|++|++++ + .++.++.    ..++|+.|++++ +.++.++... ..+++|++|++++| .+..+
T Consensus       183 l~~l~~~---~~~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l  255 (330)
T 1xku_A          183 ITTIPQG---LPPSLTELHLDG-N-KITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKV  255 (330)
T ss_dssp             CCSCCSS---CCTTCSEEECTT-S-CCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred             cccCCcc---ccccCCEEECCC-C-cCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCccC
Confidence            3333321   125566666665 2 3333321    344666666666 3455544333 55666666666664 45555


Q ss_pred             cC-CCCCCCCcEEecCCCc
Q 023528          224 SK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       224 ~~-~~~~~~L~~L~l~~c~  241 (281)
                      |. ...+++|++|+++++.
T Consensus       256 p~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSC
T ss_pred             ChhhccCCCcCEEECCCCc
Confidence            54 2224566666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.73  E-value=7.9e-17  Score=149.71  Aligned_cols=231  Identities=16%  Similarity=0.118  Sum_probs=156.2

Q ss_pred             CccceeecccCCCCCcc------------------cCCCCC--ccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecC
Q 023528            1 MKQDISRSSSGSTSRTP------------------FSSENE--LPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKD   59 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~------------------~~~~~~--~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~   59 (281)
                      +++|+.|+++++. ++.                  +|....  -.++|++|++++|.....+|. ++.+++ |++|++++
T Consensus       205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~  282 (636)
T 4eco_A          205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVAC  282 (636)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS-CCEEECTT
T ss_pred             ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC-CCEEECcC
Confidence            4688999999876 666                  844444  357999999999986667775 888999 99999999


Q ss_pred             Cc-chh-cccc------------c---eeecCCCCCccCCC--CCCCCCCccEEEeccCcccccccccCcCCCCccEEee
Q 023528           60 CS-KLE-SLAE------------R---IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEI  120 (281)
Q Consensus        60 ~~-~l~-~~p~------------~---L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l  120 (281)
                      +. ..+ .+|.            .   ++++++. +..+|.  .+..+++|++|++++|...+.+| .+..+++|++|++
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            97 333 3442            1   7888874 458888  78889999999999976555888 8899999999999


Q ss_pred             cCCcCCcccCCC-CCCCC-cCeEEecCCCCccccchhhhccC--CCcceEEeecCCCCCccCCC----------CCCCcc
Q 023528          121 RECRSLVSFPED-GFPTN-LQSLVVDDLKISKPLFEWGLDRF--ACLRELRIRGGCPDLVSSPR----------FPASLT  186 (281)
Q Consensus       121 ~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~  186 (281)
                      +++ .+..+|.. ..+++ |+.|++++|. ++.+|. .+...  ++|++|++++ +.-....|.          ...+|+
T Consensus       361 ~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          361 AYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             CSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             CCC-ccccccHhhhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcC-CcCCCcchhhhcccccccccCCCCC
Confidence            985 45566654 44566 8889988855 345553 33333  3677777776 433222222          123566


Q ss_pred             EEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CC-------CCcEEecCCCc
Q 023528          187 QLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PK-------SLLRLGIDDCP  241 (281)
Q Consensus       187 ~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~-------~L~~L~l~~c~  241 (281)
                      .|++++ +.++.+|... ..+++|++|++++| .++.+|...+  ..       +|++|++++|.
T Consensus       437 ~L~Ls~-N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          437 SINLSN-NQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             EEECCS-SCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             EEECcC-CccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc
Confidence            666666 4555666433 44666666666663 3445554322  11       56666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=1.5e-16  Score=146.97  Aligned_cols=229  Identities=17%  Similarity=0.073  Sum_probs=141.9

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG   74 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~   74 (281)
                      ++++.++++++. ++.+ +.....++|++|++++|. ++.+|.+ .+++ |++|+++++..+..++..       +++++
T Consensus       285 ~~L~~L~l~~~~-~~~l-~~l~~~~~L~~L~l~~n~-l~~lp~~-~l~~-L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          285 ANVSAMSLAGVS-IKYL-EDVPKHFKWQSLSIIRCQ-LKQFPTL-DLPF-LKSLTLTMNKGSISFKKVALPSLSYLDLSR  359 (606)
T ss_dssp             TTCSEEEEESCC-CCCC-CCCCTTCCCSEEEEESCC-CSSCCCC-CCSS-CCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred             CCCCEEEecCcc-chhh-hhccccccCCEEEccccc-CcccccC-CCCc-cceeeccCCcCccchhhccCCCCCEEECcC
Confidence            345566666543 4555 322222577777777776 3666666 6777 777777777544433221       55554


Q ss_pred             CCCCccC---CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccC--CCCCCCCcCeEEecCCCCc
Q 023528           75 CPNLESF---PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFP--EDGFPTNLQSLVVDDLKIS  149 (281)
Q Consensus        75 ~~~l~~l---~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~~  149 (281)
                      +. +..+   +.....+++|++|++++|. +..+|..+..+++|++|+++++......+  ....+++|+.|++++|...
T Consensus       360 n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          360 NA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             SC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             Cc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence            42 2222   3344456777888877754 55566677778888888887753333323  2256778888888886544


Q ss_pred             cccchhhhccCCCcceEEeecCCCCCcc-CCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccc-
Q 023528          150 KPLFEWGLDRFACLRELRIRGGCPDLVS-SPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYF-  223 (281)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i-  223 (281)
                      ...+ ..+..+++|++|++++ +.-... ++.   ..++|+.|++++| .++.++... +.+++|++|++++| .+..+ 
T Consensus       438 ~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~  513 (606)
T 3vq2_A          438 IDFD-GIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLD  513 (606)
T ss_dssp             ECCT-TTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEE
T ss_pred             ccch-hhhcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcC
Confidence            4333 3577888888888887 433221 343   4568888888885 555554344 78888888888886 45544 


Q ss_pred             cC-CCCCCCCcEEecCCCc
Q 023528          224 SK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       224 ~~-~~~~~~L~~L~l~~c~  241 (281)
                      |. ...+++|++|++++|.
T Consensus       514 ~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          514 SSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             GGGTTTCTTCCEEECTTSC
T ss_pred             HHHccCCCcCCEEECCCCc
Confidence            33 2235788888888876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.9e-16  Score=150.88  Aligned_cols=230  Identities=14%  Similarity=0.088  Sum_probs=138.0

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc--------CCCcCCcCcEEEecCCcchhcccc--
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW--------NGNLPRALKYLYVKDCSKLESLAE--   68 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~--------~~~l~~~L~~L~l~~~~~l~~~p~--   68 (281)
                      +++|+.|+++++.-...+|....-.++|++|++++|..+.  .+|.        +..+++ |++|+++++.. ..+|.  
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~Ls~N~L-~~ip~~~  567 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNL-EEFPASA  567 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEECCSSCC-CBCCCHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEeeCCcC-CccCChh
Confidence            4567788888776566663222223577777777775333  2332        233446 77777777653 35555  


Q ss_pred             c---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCC-ccEEeecCCcCCcccCCC-C----
Q 023528           69 R---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTS-LLHLEIRECRSLVSFPED-G----  133 (281)
Q Consensus        69 ~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~~~~l~~l~~~-~----  133 (281)
                      .         |+++++. +..+| .+..+++|+.|++++|. +..+|..+..+++ |+.|+++++. +..+|.. .    
T Consensus       568 ~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhcccc
Confidence            2         5665553 33555 55556666666666643 3355655666665 6666666532 3233321 1    


Q ss_pred             ---------------------------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-C---C
Q 023528          134 ---------------------------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-F---P  182 (281)
Q Consensus       134 ---------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~  182 (281)
                                                 ..++|+.|++++| .+..++...+..+++|+.|++++  +.+..+|. .   .
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~  720 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN--NLMTSIPENSLKPK  720 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS--CCCSCCCTTSSSCT
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC--CcCCccChHHhccc
Confidence                                       1235666666663 33456655556778888888887  45556665 1   1


Q ss_pred             -------CCccEEeccCCCCCccccccCC--CCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528          183 -------ASLTQLGISDMPTLKCLSSVGE--NLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       183 -------~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~  241 (281)
                             ++|+.|++++ +.++.+|..+.  .+++|+.|++++| .+..+|. .+.+++|+.|++++++
T Consensus       721 ~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             TSCCTTGGGCCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             cccccccCCccEEECCC-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence                   1788888888 46778885555  7888888888885 5556664 2236788888887644

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=1.4e-16  Score=134.88  Aligned_cols=218  Identities=21%  Similarity=0.216  Sum_probs=153.0

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhcc---ccc---------eeecCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESL---AER---------IWIFGCPNL   78 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~---p~~---------L~l~~~~~l   78 (281)
                      .+++.+ |. .++++|++|+++++. +..+|.  ++.+++ |++|+++++. +..+   +..         ++++++. +
T Consensus        17 ~~l~~i-p~-~~~~~l~~L~L~~n~-l~~i~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i   90 (306)
T 2z66_A           17 KGLTSV-PT-GIPSSATRLELESNK-LQSLPHGVFDKLTQ-LTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-V   90 (306)
T ss_dssp             SCCSSC-CS-CCCTTCCEEECCSSC-CCCCCTTTTTTCTT-CSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-E
T ss_pred             CCcccC-CC-CCCCCCCEEECCCCc-cCccCHhHhhcccc-CCEEECCCCc-cCcccCcccccccccccCEEECCCCc-c
Confidence            347778 54 345699999999887 677765  678899 9999999875 2221   111         6776653 4


Q ss_pred             ccCCCCCCCCCCccEEEeccCccccccc--ccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchh
Q 023528           79 ESFPEGGLPSTKLTRLTIWKCKNLKALP--NCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                      ..++.....+++|++|+++++. +..++  ..+..+++|++|+++++......+. ...+++|++|++++|.........
T Consensus        91 ~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           91 ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            5566666678899999999954 44444  3678899999999998643333332 256789999999986544422233


Q ss_pred             hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC---C
Q 023528          156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ---G  227 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~---~  227 (281)
                      .+..+++|++|++++ + .++.+ +.   ..++|+.|++++ +.++.++... ..+++|++|++++|. +......   .
T Consensus       170 ~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  245 (306)
T 2z66_A          170 IFTELRNLTFLDLSQ-C-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH  245 (306)
T ss_dssp             CCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCC
T ss_pred             HHhhCcCCCEEECCC-C-CcCCcCHHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHh
Confidence            678889999999998 4 45554 33   456899999999 5677776444 788999999999964 4444332   2


Q ss_pred             CCCCCcEEecCCCc
Q 023528          228 LPKSLLRLGIDDCP  241 (281)
Q Consensus       228 ~~~~L~~L~l~~c~  241 (281)
                      ++++|++|++++++
T Consensus       246 ~~~~L~~L~L~~N~  259 (306)
T 2z66_A          246 FPSSLAFLNLTQND  259 (306)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhccCCEEEccCCC
Confidence            24589999998865

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=9.1e-17  Score=138.79  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             ccccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528          199 LSSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGIDDCP  241 (281)
Q Consensus       199 l~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~  241 (281)
                      +|..+..+++|++|++++| +++.+|...  .+++|++|++++++
T Consensus       269 l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            4422367889999999995 677887743  36889999998865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.71  E-value=4.1e-16  Score=139.35  Aligned_cols=131  Identities=18%  Similarity=0.126  Sum_probs=71.3

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeec
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIF   73 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~   73 (281)
                      +++++.|+++++. ++.+ +.+.+ ++|++|++++|. +..++ ++.+++ |++|+++++. +..+|-+       ++++
T Consensus        63 l~~L~~L~Ls~n~-l~~~-~~~~l-~~L~~L~Ls~N~-l~~~~-~~~l~~-L~~L~L~~N~-l~~l~~~~l~~L~~L~l~  135 (457)
T 3bz5_A           63 LTGLTKLICTSNN-ITTL-DLSQN-TNLTYLACDSNK-LTNLD-VTPLTK-LTYLNCDTNK-LTKLDVSQNPLLTYLNCA  135 (457)
T ss_dssp             CTTCSEEECCSSC-CSCC-CCTTC-TTCSEEECCSSC-CSCCC-CTTCTT-CCEEECCSSC-CSCCCCTTCTTCCEEECT
T ss_pred             cCCCCEEEccCCc-CCeE-ccccC-CCCCEEECcCCC-Cceee-cCCCCc-CCEEECCCCc-CCeecCCCCCcCCEEECC
Confidence            3567777777654 6666 43433 478888887766 55554 667777 7777777764 3333311       5554


Q ss_pred             CCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528           74 GCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD  145 (281)
Q Consensus        74 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  145 (281)
                      ++. +..++  ...+++|++|++++|..++.+  .+..+++|++|+++++ .++.++ ...+++|+.|++++
T Consensus       136 ~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          136 RNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDT  200 (457)
T ss_dssp             TSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCS
T ss_pred             CCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcC
Confidence            432 33332  334556666666665544444  3445555555555553 333333 23334444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=4.2e-16  Score=143.85  Aligned_cols=121  Identities=18%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             CcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      +|+.|++++|.. +..+  .+..+++|+.|++++ + .+..+ |.   ..++|+.|++++ +.+..+|.....+++|++|
T Consensus       233 ~L~~L~L~~n~l-~~~~--~l~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L  306 (597)
T 3oja_B          233 ELTILKLQHNNL-TDTA--WLLNYPGLVEVDLSY-N-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVL  306 (597)
T ss_dssp             CCCEEECCSSCC-CCCG--GGGGCTTCSEEECCS-S-CCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEE
T ss_pred             CCCEEECCCCCC-CCCh--hhccCCCCCEEECCC-C-ccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEE
Confidence            455555554322 2222  456667777777776 3 33332 22   345677777777 4666666444666777777


Q ss_pred             eccCCCCcccccCC-CCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528          213 DLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF  278 (281)
Q Consensus       213 ~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (281)
                      ++++| .+..+|.. +.+++|++|++++|..-        +      .+...+..+..+.+.|+.+.
T Consensus       307 ~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~--------~------~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          307 DLSHN-HLLHVERNQPQFDRLENLYLDHNSIV--------T------LKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             ECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC--------C------CCCCTTCCCSEEECCSSCEE
T ss_pred             ECCCC-CCCccCcccccCCCCCEEECCCCCCC--------C------cChhhcCCCCEEEeeCCCCC
Confidence            77774 44555542 22567777777776531        1      22334556667777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=2.1e-16  Score=133.80  Aligned_cols=227  Identities=18%  Similarity=0.161  Sum_probs=153.0

Q ss_pred             ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccC---CCCCCCCCCccEEE
Q 023528           29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESF---PEGGLPSTKLTRLT   95 (281)
Q Consensus        29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l---~~~~~~~~~L~~L~   95 (281)
                      +.++.++.. ++.+|. +..++ |++|+++++. ++.+|..          ++++++. +..+   +.....+++|++|+
T Consensus        10 ~~l~c~~~~-l~~ip~-~~~~~-l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKG-LTSVPT-GIPSS-ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSC-CSSCCS-CCCTT-CCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCC-cccCCC-CCCCC-CCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEE
Confidence            456666543 667775 22345 9999999976 4555542          6666543 2222   23333467899999


Q ss_pred             eccCcccccccccCcCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCC
Q 023528           96 IWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGC  172 (281)
Q Consensus        96 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (281)
                      +++| .+..+|..+..+++|++|+++++ .+..++.   ...+++|+.|++++|.. .......+..+++|++|++++ +
T Consensus        85 Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~-n  160 (306)
T 2z66_A           85 LSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAG-N  160 (306)
T ss_dssp             CCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTT-C
T ss_pred             CCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCC-C
Confidence            9995 45667777888999999999884 4555543   35678999999998654 333334678889999999998 4


Q ss_pred             CCCcc--CCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCchHH
Q 023528          173 PDLVS--SPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCPLME  244 (281)
Q Consensus       173 ~~~~~--~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~~l~  244 (281)
                       .+..  ++.   ..++|+.|++++ +.++.++... ..+++|++|++++| .+..++..  ..+++|++|+++++....
T Consensus       161 -~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          161 -SFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             -EEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             -ccccccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcc
Confidence             3432  343   567899999999 4677764344 88899999999995 56666542  236899999999886321


Q ss_pred             HHHhhcCCCCCccccccccc-ccccEEEECCEEee
Q 023528          245 KRWIKADYPYTFATRYWPMI-THIPCVIVNGRFVF  278 (281)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~  278 (281)
                      ..     .      ..+..+ ..+..+.+.|+.+.
T Consensus       238 ~~-----~------~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          238 SK-----K------QELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CS-----S------SSCCCCCTTCCEEECTTCCEE
T ss_pred             cC-----H------HHHHhhhccCCEEEccCCCee
Confidence            11     0      122333 36777888776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=9.5e-16  Score=140.45  Aligned_cols=151  Identities=16%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             CCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC----CCCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528           87 PSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE----DGFPTNLQSLVVDDLKISKPLFEWGLDRFAC  162 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  162 (281)
                      .+++|++|++++|.....+|..+..+++|++|+++++ .++.++.    ...+++|+.|++++|.....++...+..+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            3455666666665433334555666666666666653 3333321    2455667777776644333355444566677


Q ss_pred             cceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCC
Q 023528          163 LRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDD  239 (281)
Q Consensus       163 L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~  239 (281)
                      |++|++++ +.-...++. .+++|+.|++++ +.++.+|.....+++|++|++++| +++.+|..  ..+++|++|++.+
T Consensus       430 L~~L~l~~-n~l~~~~~~~l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          430 ILVLNLSS-NMLTGSVFRCLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             CCEEECCS-SCCCGGGGSSCCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCS
T ss_pred             CCEEECCC-CCCCcchhhhhcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecC
Confidence            77777776 433333333 336889999998 578888855578889999999984 67778764  2367889999887


Q ss_pred             Cc
Q 023528          240 CP  241 (281)
Q Consensus       240 c~  241 (281)
                      ++
T Consensus       507 N~  508 (562)
T 3a79_B          507 NP  508 (562)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-15  Score=135.14  Aligned_cols=193  Identities=20%  Similarity=0.095  Sum_probs=114.4

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG   74 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~   74 (281)
                      ++++.|+++++ .++.+ |.....++|++|++++|. +..++ ++.+++ |++|+++++. +..++-+       +++++
T Consensus        42 ~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~-L~~L~Ls~N~-l~~~~~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           42 ATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNN-ITTLD-LSQNTN-LTYLACDSNK-LTNLDVTPLTKLTYLNCDT  115 (457)
T ss_dssp             TTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSC-CSCCC-CTTCTT-CSEEECCSSC-CSCCCCTTCTTCCEEECCS
T ss_pred             CCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCc-CCeEc-cccCCC-CCEEECcCCC-CceeecCCCCcCCEEECCC
Confidence            56777788775 46666 322233688888888776 66665 677788 8888888765 3333322       66666


Q ss_pred             CCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch
Q 023528           75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE  154 (281)
Q Consensus        75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~  154 (281)
                      + .+..++  +..+++|++|++++| .++.+  .+..+++|++|+++++..++.++ ...+++|+.|++++| .++.++ 
T Consensus       116 N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n-~l~~l~-  186 (457)
T 3bz5_A          116 N-KLTKLD--VSQNPLLTYLNCARN-TLTEI--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN-KITELD-  186 (457)
T ss_dssp             S-CCSCCC--CTTCTTCCEEECTTS-CCSCC--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS-CCCCCC-
T ss_pred             C-cCCeec--CCCCCcCCEEECCCC-cccee--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC-ccceec-
Confidence            5 344454  556778888888885 44445  36677888888888765665552 456678888888774 344443 


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                        +..+++|+.|++++  +.++.++. ..++|+.|++++ +.++.+|  .+.+++|++|++++
T Consensus       187 --l~~l~~L~~L~l~~--N~l~~~~l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDT--NNITKLDLNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             --CTTCTTCCEEECCS--SCCSCCCCTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCS
T ss_pred             --cccCCCCCEEECcC--CcCCeeccccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeC
Confidence              45556666666665  23333322 233455555555 2344443  23344444444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=4.5e-16  Score=141.18  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      .+++|++|++++|.....++...+..+++|++|++++ +.-...++. .+++|+.|++++ +.++.+|.....+++|++|
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQEL  449 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEE
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcC-CCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEE
Confidence            3445555555543322224333344455555555555 322222222 335777777777 4666777444677777777


Q ss_pred             eccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528          213 DLSNCPKLKYFSKQG--LPKSLLRLGIDDCP  241 (281)
Q Consensus       213 ~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~  241 (281)
                      ++++| .++.+|...  .+++|++|++++++
T Consensus       450 ~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          450 NVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence            77774 566666532  25677777777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.70  E-value=3.4e-15  Score=133.24  Aligned_cols=33  Identities=30%  Similarity=0.190  Sum_probs=16.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCC
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDC   60 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~   60 (281)
                      ++|++|++++|. +..+|.++.+++ |++|+++++
T Consensus       131 ~~L~~L~L~~n~-l~~lp~~~~l~~-L~~L~l~~N  163 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEKLPELQNSSF-LKIIDVDNN  163 (454)
T ss_dssp             TTCCEEECCSSC-CSSCCCCTTCTT-CCEEECCSS
T ss_pred             CCCCEEECcCCC-CCCCcccCCCCC-CCEEECCCC
Confidence            345555555443 334444555555 555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=7.3e-16  Score=146.92  Aligned_cols=230  Identities=17%  Similarity=0.103  Sum_probs=156.2

Q ss_pred             CccceeecccCCCCCcc------------------cCCCCC--ccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecC
Q 023528            1 MKQDISRSSSGSTSRTP------------------FSSENE--LPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKD   59 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~------------------~~~~~~--~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~   59 (281)
                      |++|+.|+++++. ++.                  +|+...  -.++|++|++++|.....+|. ++.+++ |++|++++
T Consensus       447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~-L~~L~Ls~  524 (876)
T 4ecn_A          447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNIAC  524 (876)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS-CCEEECTT
T ss_pred             CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC-CCEEECcC
Confidence            5688999999866 665                  744433  347999999999986777775 888999 99999999


Q ss_pred             Ccchh--cccc-------------c---eeecCCCCCccCCC--CCCCCCCccEEEeccCcccccccccCcCCCCccEEe
Q 023528           60 CSKLE--SLAE-------------R---IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLE  119 (281)
Q Consensus        60 ~~~l~--~~p~-------------~---L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~  119 (281)
                      +..+.  .+|.             .   |+++++. +..+|.  .+..+++|+.|++++|. +..+| .+..+++|+.|+
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~  601 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK  601 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence            87232  3432             1   7887764 448888  78889999999999965 45888 889999999999


Q ss_pred             ecCCcCCcccCCC-CCCCC-cCeEEecCCCCccccchhhhccCC--CcceEEeecCCCCCccCCC--------CCCCccE
Q 023528          120 IRECRSLVSFPED-GFPTN-LQSLVVDDLKISKPLFEWGLDRFA--CLRELRIRGGCPDLVSSPR--------FPASLTQ  187 (281)
Q Consensus       120 l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~--------~~~~L~~  187 (281)
                      ++++ .+..+|.. ..+++ |+.|++++|. ++.+|. .+...+  +|+.|++++ +.-...+|.        ...+|+.
T Consensus       602 Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~-~~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          602 LDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPN-IFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             CCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCS-CCCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             CcCC-ccccchHHHhhccccCCEEECcCCC-CCcCch-hhhccccCCCCEEECcC-CcCCCccccchhhhccccCCCcCE
Confidence            9985 45577754 55667 9999999865 445553 344443  378888877 433222221        1235667


Q ss_pred             EeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C-------CCCcEEecCCCc
Q 023528          188 LGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P-------KSLLRLGIDDCP  241 (281)
Q Consensus       188 L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~-------~~L~~L~l~~c~  241 (281)
                      |++++ +.+..+|..+ ..+++|++|++++| .+..+|....  .       ++|++|++++|.
T Consensus       678 L~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~  739 (876)
T 4ecn_A          678 VTLSY-NEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK  739 (876)
T ss_dssp             EECCS-SCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred             EEccC-CcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC
Confidence            77776 3555666444 45666666666664 4555554222  1       156666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=1.3e-15  Score=130.50  Aligned_cols=202  Identities=17%  Similarity=0.256  Sum_probs=110.7

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhcccc-c---------eeecCCCCCccCCCCCCCCCCccEEEe
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAE-R---------IWIFGCPNLESFPEGGLPSTKLTRLTI   96 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~-~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l   96 (281)
                      .++.++++++. +..+|. .-.++ |++|+++++. +..++. .         ++++++.-....+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~-l~~ip~-~~~~~-l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPK-EISPD-TTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSC-CSSCCS-CCCTT-CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCC-ccccCC-CCCCC-CeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            79999999876 777775 22356 9999999975 333322 1         566555322222445555667777777


Q ss_pred             ccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcc-ccchhhhccCCCcceEEeecCCC
Q 023528           97 WKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCP  173 (281)
Q Consensus        97 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~  173 (281)
                      ++| .+..+|..+.  ++|++|+++++ .+..++..  ..+++|++|++++|..-. ......+..+ +|++|++++  +
T Consensus       110 ~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~--n  182 (332)
T 2ft3_A          110 SKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE--A  182 (332)
T ss_dssp             CSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS--S
T ss_pred             CCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC--C
Confidence            764 4455655443  67777777663 44444432  456677777777654321 1222233334 555555554  3


Q ss_pred             CCccCCC-CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCc
Q 023528          174 DLVSSPR-FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       174 ~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~  241 (281)
                      .++.+|. .+++|++|++++ +.++.++... ..+++|++|++++| .++.++..  ..+++|++|++++|.
T Consensus       183 ~l~~l~~~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          183 KLTGIPKDLPETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             BCSSCCSSSCSSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCCccCccccCCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc
Confidence            3444443 334566666666 3444444222 55566666666653 34444331  124556666665553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=4.6e-15  Score=136.90  Aligned_cols=56  Identities=25%  Similarity=0.287  Sum_probs=28.4

Q ss_pred             ceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccc
Q 023528            4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA   67 (281)
Q Consensus         4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p   67 (281)
                      +..+++++ ..++.+ |.. ++++|++|++++|. +..+|.  .+++ |++|++++|. ++.+|
T Consensus        42 l~~L~ls~-n~L~~l-p~~-l~~~L~~L~L~~N~-l~~lp~--~l~~-L~~L~Ls~N~-l~~lp   97 (622)
T 3g06_A           42 NAVLNVGE-SGLTTL-PDC-LPAHITTLVIPDNN-LTSLPA--LPPE-LRTLEVSGNQ-LTSLP   97 (622)
T ss_dssp             CCEEECCS-SCCSCC-CSC-CCTTCSEEEECSCC-CSCCCC--CCTT-CCEEEECSCC-CSCCC
T ss_pred             CcEEEecC-CCcCcc-Chh-hCCCCcEEEecCCC-CCCCCC--cCCC-CCEEEcCCCc-CCcCC
Confidence            44555554 335555 322 22466666666554 555554  3444 6666666654 33443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=8.6e-16  Score=137.60  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eeec
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWIF   73 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~   73 (281)
                      +++++|++.++. ++.+ +.....++|++|++++|. +..++.++.+++ |++|+++++.. ..++..        ++++
T Consensus        46 ~~l~~L~l~~~~-i~~l-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~-L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~  120 (466)
T 1o6v_A           46 DQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTK-LVDILMNNNQI-ADITPLANLTNLTGLTLF  120 (466)
T ss_dssp             HTCCEEECCSSC-CCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTT-CCEEECCSSCC-CCCGGGTTCTTCCEEECC
T ss_pred             ccccEEecCCCC-CccC-cchhhhcCCCEEECCCCc-cCCchhhhcccc-CCEEECCCCcc-ccChhhcCCCCCCEEECC
Confidence            356667776643 5556 333333577777777765 555555666777 77777776542 222111        5555


Q ss_pred             CCCCCccCCCCCCCCCCccEEEeccC
Q 023528           74 GCPNLESFPEGGLPSTKLTRLTIWKC   99 (281)
Q Consensus        74 ~~~~l~~l~~~~~~~~~L~~L~l~~c   99 (281)
                      ++ .+..++. ...+++|++|++++|
T Consensus       121 ~n-~l~~~~~-~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A          121 NN-QITDIDP-LKNLTNLNRLELSSN  144 (466)
T ss_dssp             SS-CCCCCGG-GTTCTTCSEEEEEEE
T ss_pred             CC-CCCCChH-HcCCCCCCEEECCCC
Confidence            44 2333332 344556666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=8.3e-16  Score=137.71  Aligned_cols=146  Identities=23%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             CCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch------------
Q 023528           87 PSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE------------  154 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~------------  154 (281)
                      .+++|++|++++|. +..++ .+..+++|++|+++++. +..++..+.+++|+.|++++|. ++.++.            
T Consensus       175 ~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          175 NLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDL  250 (466)
T ss_dssp             TCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC
T ss_pred             cCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCC-cccchhhhcCCCCCEEEC
Confidence            35566666666643 33332 34455555666555532 2222222334445555554432 222220            


Q ss_pred             --------hhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCccccc
Q 023528          155 --------WGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       155 --------~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~  224 (281)
                              ..+..+++|++|++++ + .+..++.  ..++|+.|++++ +.++.++ ..+.+++|++|++++| .+..++
T Consensus       251 ~~n~l~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~  325 (466)
T 1o6v_A          251 ANNQISNLAPLSGLTKLTELKLGA-N-QISNISPLAGLTALTNLELNE-NQLEDIS-PISNLKNLTYLTLYFN-NISDIS  325 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCS-S-CCCCCGGGTTCTTCSEEECCS-SCCSCCG-GGGGCTTCSEEECCSS-CCSCCG
T ss_pred             CCCccccchhhhcCCCCCEEECCC-C-ccCccccccCCCccCeEEcCC-CcccCch-hhcCCCCCCEEECcCC-cCCCch
Confidence                    0134444455555544 2 2222222  344566666666 3444444 2355666666666664 344443


Q ss_pred             CCCCCCCCcEEecCCCc
Q 023528          225 KQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       225 ~~~~~~~L~~L~l~~c~  241 (281)
                      ....+++|++|++.+|.
T Consensus       326 ~~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             GGGGCTTCCEEECCSSC
T ss_pred             hhccCccCCEeECCCCc
Confidence            33335677777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=2.2e-15  Score=126.76  Aligned_cols=190  Identities=20%  Similarity=0.127  Sum_probs=137.2

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL   78 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l   78 (281)
                      ++++++++.++ ..++.+ |.+ +++++++|+++++. +..++  .+..+++ |++|+++++. +..+            
T Consensus         9 l~~l~~l~~~~-~~l~~i-p~~-~~~~l~~L~L~~N~-l~~~~~~~~~~l~~-L~~L~L~~n~-l~~~------------   70 (290)
T 1p9a_G            9 VASHLEVNCDK-RNLTAL-PPD-LPKDTTILHLSENL-LYTFSLATLMPYTR-LTQLNLDRAE-LTKL------------   70 (290)
T ss_dssp             STTCCEEECTT-SCCSSC-CSC-CCTTCCEEECTTSC-CSEEEGGGGTTCTT-CCEEECTTSC-CCEE------------
T ss_pred             cCCccEEECCC-CCCCcC-CCC-CCCCCCEEEcCCCc-CCccCHHHhhcCCC-CCEEECCCCc-cCcc------------
Confidence            35677888876 558888 543 44699999999887 55553  3778888 9999998864 3322            


Q ss_pred             ccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528           79 ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG  156 (281)
Q Consensus        79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~  156 (281)
                         +.. ..+++|++|+++++ .+..+|..+..+++|++|+++++ .++.++..  ..+++|+.|++++| .++.++...
T Consensus        71 ---~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  143 (290)
T 1p9a_G           71 ---QVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL  143 (290)
T ss_dssp             ---ECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             ---cCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhh
Confidence               221 34668999999885 56678877888889999999874 56666543  56788888888884 555666556


Q ss_pred             hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP  218 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  218 (281)
                      +..+++|+.|++++  +.++.++.    ..++|+.|++++ +.++.+|..+....+|+++++++++
T Consensus       144 ~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          144 LTPTPKLEKLSLAN--NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTTCTTCCEEECTT--SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccCCCEEECCC--CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence            77888888888887  55666664    356788888888 5788888555666788888888753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.68  E-value=2.8e-15  Score=140.23  Aligned_cols=190  Identities=17%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccCCCCCCCCCCccEEEeccCcc--cccccccCcCC
Q 023528           45 NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN--LKALPNCIHNL  112 (281)
Q Consensus        45 ~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~--l~~lp~~~~~l  112 (281)
                      +..+++ |++|+++++...+.+|..          ++++++......+..+..+++|++|++++|..  +..+|..+..+
T Consensus       401 ~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          401 FSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            445556 666666665533333211          45555432222233444456667776666532  23456666777


Q ss_pred             CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccc--------hhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLF--------EWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~--------~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                      ++|++|+++++ .+..++..  ..+++|+.|++++|.. +.++        ...+..+++|+.|++++  +.++.+|.  
T Consensus       480 ~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~  555 (680)
T 1ziw_A          480 RNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV  555 (680)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT
T ss_pred             CCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH
Confidence            77777777764 44444432  4566777777777432 2221        11256667777777776  45555553  


Q ss_pred             --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCCCc
Q 023528          181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDDCP  241 (281)
Q Consensus       181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~c~  241 (281)
                        ..++|+.|++++ +.++.+|... ..+++|++|++++| .++.++...   .+++|+.+++.+++
T Consensus       556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence              345677777776 5677776554 66777777777774 555555421   24667777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=3.5e-15  Score=125.01  Aligned_cols=195  Identities=19%  Similarity=0.185  Sum_probs=145.4

Q ss_pred             ccceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCC
Q 023528            2 KQDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPN   77 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~   77 (281)
                      ++++.|+++++. ++.+ +...+  .++|++|+++++. +..++  .++.+++ |++|+++++..++.++          
T Consensus        32 ~~l~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~~l~~~~----------   97 (285)
T 1ozn_A           32 AASQRIFLHGNR-ISHV-PAASFRACRNLTILWLHSNV-LARIDAAAFTGLAL-LEQLDLSDNAQLRSVD----------   97 (285)
T ss_dssp             TTCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSCTTCCCCC----------
T ss_pred             CCceEEEeeCCc-CCcc-CHHHcccCCCCCEEECCCCc-cceeCHhhcCCccC-CCEEeCCCCCCccccC----------
Confidence            467889998754 7777 43322  3699999999886 66553  3788999 9999998865333321          


Q ss_pred             CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchh
Q 023528           78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                          +..+..+++|++|++++|......|..+..+++|++|+++++ .+..++..  ..+++|+.|++++| .++.++..
T Consensus        98 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  171 (285)
T 1ozn_A           98 ----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPER  171 (285)
T ss_dssp             ----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred             ----HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHH
Confidence                334455779999999997544444567889999999999985 55566543  56889999999985 56666655


Q ss_pred             hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCC
Q 023528          156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPK  219 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~  219 (281)
                      .+..+++|++|++++ + .+..+ +.   ..++|+.|++++ +.++.++... ..+++|++|++++++-
T Consensus       172 ~~~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQ-N-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTTCTTCCEEECCS-S-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             HhcCccccCEEECCC-C-cccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCc
Confidence            688899999999998 4 44444 33   456899999999 5787777554 8899999999999653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=4.5e-16  Score=132.55  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=97.0

Q ss_pred             CCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           89 TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      ++|++|++++| .+..++.  ..+++|++|+++++ .+..++..  ..+++|+.|++++|......+......+++|++|
T Consensus        99 ~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A           99 PSIETLHAANN-NISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             TTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CCcCEEECCCC-ccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence            57888888875 3444432  23677888888874 44444332  4567888888888544333332223467888888


Q ss_pred             EeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchH
Q 023528          167 RIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLM  243 (281)
Q Consensus       167 ~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l  243 (281)
                      ++++  +.++.++.  ..++|++|++++ +.++.+|..+..+++|++|++++| .++.+|.. ..+++|++|++++++..
T Consensus       175 ~L~~--N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          175 NLQY--NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECTT--SCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCC--CcCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence            8887  44555544  466888888888 577777755677788888888885 66677652 33578888888877643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=2.7e-16  Score=133.68  Aligned_cols=211  Identities=14%  Similarity=0.112  Sum_probs=129.1

Q ss_pred             CcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecC-Ccchhccccc---------eeecCCCCCccCCCCCCCCCCcc
Q 023528           26 ATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKD-CSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLT   92 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~-~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~   92 (281)
                      .+++.|+++++.--.  .+|. ++.+++ |++|++++ +...+.+|..         ++++++.....+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            479999999987333  4554 788999 99999996 4433344433         66666544345666666677777


Q ss_pred             EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCC-CcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528           93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPT-NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus        93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      +|++++|.....+|..+..+++|++|+++++.....+|.. ..++ +|+.|++++|......+. .+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcC
Confidence            7777776544456667777777777777775333344433 3333 777777777543334432 455555 77777776


Q ss_pred             CCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528          171 GCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       171 ~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~  241 (281)
                       +.-....+.   ..++|+.|+++++ .+...+.....+++|++|++++|.-.+.+|. ...+++|++|+++++.
T Consensus       207 -N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          207 -NMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             -SEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             -CcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence             322222222   4557777777774 4443322456667777777777543334443 2235677777777775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.67  E-value=5.9e-15  Score=136.18  Aligned_cols=231  Identities=26%  Similarity=0.295  Sum_probs=171.6

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGC   75 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~   75 (281)
                      ++++.|+++++. ++.+ |.  .+++|++|++++|. +..+|.  .+++ |++|++++|. +..+|..      |+++++
T Consensus        61 ~~L~~L~L~~N~-l~~l-p~--~l~~L~~L~Ls~N~-l~~lp~--~l~~-L~~L~Ls~N~-l~~l~~~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNN-LTSL-PA--LPPELRTLEVSGNQ-LTSLPV--LPPG-LLELSIFSNP-LTHLPALPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCC-CSCC-CC--CCTTCCEEEECSCC-CSCCCC--CCTT-CCEEEECSCC-CCCCCCCCTTCCEEECCSS
T ss_pred             CCCcEEEecCCC-CCCC-CC--cCCCCCEEEcCCCc-CCcCCC--CCCC-CCEEECcCCc-CCCCCCCCCCcCEEECCCC
Confidence            468889999864 8888 44  45799999999987 777776  6788 9999999975 4444433      777765


Q ss_pred             CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchh
Q 023528           76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                       .+..+|..   +++|++|++++| .+..+|.   .+.+|+.|+++++ .++.+|  ..+++|+.|++++| .++.++. 
T Consensus       132 -~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~~l~--~~~~~L~~L~Ls~N-~l~~l~~-  198 (622)
T 3g06_A          132 -QLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLP--MLPSGLQELSVSDN-QLASLPT-  198 (622)
T ss_dssp             -CCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-
T ss_pred             -CCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCC-CCCCCc--ccCCCCcEEECCCC-CCCCCCC-
Confidence             46667654   368999999996 5566654   3568888999884 666676  56789999999985 4555552 


Q ss_pred             hhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEE
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRL  235 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L  235 (281)
                         .+++|+.|++++  +.+..++..+++|+.|++++ +.++.+|   ..+++|++|++++| .++.+|.  .+++|++|
T Consensus       199 ---~~~~L~~L~L~~--N~l~~l~~~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L  266 (622)
T 3g06_A          199 ---LPSELYKLWAYN--NRLTSLPALPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSL  266 (622)
T ss_dssp             ---CCTTCCEEECCS--SCCSSCCCCCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEE
T ss_pred             ---ccchhhEEECcC--CcccccCCCCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEE
Confidence               357899999998  56777877778999999999 5788888   56789999999995 7888877  67899999


Q ss_pred             ecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528          236 GIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF  278 (281)
Q Consensus       236 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (281)
                      ++++|..- ..           ...+..+.++..+.+.++.+.
T Consensus       267 ~Ls~N~L~-~l-----------p~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          267 SVYRNQLT-RL-----------PESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             ECCSSCCC-SC-----------CGGGGGSCTTCEEECCSCCCC
T ss_pred             eCCCCCCC-cC-----------CHHHhhccccCEEEecCCCCC
Confidence            99988532 11           122445566667777765543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.1e-14  Score=121.14  Aligned_cols=185  Identities=26%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             eecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC
Q 023528            6 SRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE   83 (281)
Q Consensus         6 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~   83 (281)
                      .++.++ ..++.+ |. .+++++++|+++++. +..++.  ++.+++ |++|+++++.                +..++.
T Consensus        20 ~l~~~~-~~l~~i-p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~----------------l~~i~~   78 (270)
T 2o6q_A           20 SVDCSS-KKLTAI-PS-NIPADTKKLDLQSNK-LSSLPSKAFHRLTK-LRLLYLNDNK----------------LQTLPA   78 (270)
T ss_dssp             EEECTT-SCCSSC-CS-CCCTTCSEEECCSSC-CSCCCTTSSSSCTT-CCEEECCSSC----------------CSCCCT
T ss_pred             EEEccC-CCCCcc-CC-CCCCCCCEEECcCCC-CCeeCHHHhcCCCC-CCEEECCCCc----------------cCeeCh
Confidence            344443 335555 32 233466666666554 444442  555666 6666665532                222222


Q ss_pred             CC-CCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528           84 GG-LPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR  159 (281)
Q Consensus        84 ~~-~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~  159 (281)
                      .. ..+++|++|+++++. +..+| ..+..+++|++|+++++ .+..++..  ..+++|++|++++| .++.++...+..
T Consensus        79 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~  155 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK  155 (270)
T ss_dssp             TTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             hhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC
Confidence            22 334566666666643 33343 23455666666666653 33333332  34556666666653 333444334555


Q ss_pred             CCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          160 FACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      +++|++|++++  +.+..++.    ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus       156 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          156 LTSLKELRLYN--NQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccceeEecC--CcCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence            56666666655  23333332    234555555555 3444444332 44555555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=1.2e-14  Score=139.30  Aligned_cols=118  Identities=16%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             cceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------
Q 023528            3 QDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      .++.|+++++. ++.+++ ..+.  ++|++|++++|.....+++  ++.+++ |++|+++++......|..         
T Consensus        25 ~l~~LdLs~N~-i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           25 TTERLLLSFNY-IRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             TCCEEEEESCC-CCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTT-CCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CcCEEECCCCc-CCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCC-CCEEECCCCcCcccCHhHccCCcccCE
Confidence            45566666533 444422 2222  4666666666644444422  566666 666666665422222322         


Q ss_pred             eeecCCCCCccCCCC--CCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCC
Q 023528           70 IWIFGCPNLESFPEG--GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIREC  123 (281)
Q Consensus        70 L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~  123 (281)
                      |++++|.....++..  +..+++|++|++++|...+..+ ..+.++++|++|+++++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            666665433333333  5556677777777754333222 35666777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=1.4e-15  Score=129.00  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      +++|++|++++|. +..++ .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++.  +..+++|+.|+
T Consensus       106 l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~  179 (308)
T 1h6u_A          106 LQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLK  179 (308)
T ss_dssp             CTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEE
Confidence            4455555555532 33333 2555555555555553 3333333344455555555553 3333332  45555555555


Q ss_pred             eecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          168 IRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       168 l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      +++  +.+..++.  ..++|++|++++ +.+..++ ....+++|++|++++
T Consensus       180 l~~--n~l~~~~~l~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          180 ADD--NKISDISPLASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTN  226 (308)
T ss_dssp             CCS--SCCCCCGGGGGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCC--CccCcChhhcCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccC
Confidence            555  23333332  334555555555 3444444 234555555555555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.6e-15  Score=129.59  Aligned_cols=208  Identities=22%  Similarity=0.151  Sum_probs=142.3

Q ss_pred             cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------
Q 023528            3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      +++.|+++++. ++.+++ ..+  .++|++|+++++. +..++.  ++.+++ |++|+++++. +..+|..         
T Consensus        53 ~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~-l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           53 AVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSNG-INTIEEDSFSSLGS-LEHLDLSYNY-LSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT-CCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred             cCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCCc-cCccCHhhcCCCCC-CCEEECCCCc-CCcCCHhHhCCCccCC
Confidence            56777777644 666633 222  2588888888775 555533  677788 8888888764 3333321         


Q ss_pred             -eeecCCCCCccCCC--CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEec
Q 023528           70 -IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVD  144 (281)
Q Consensus        70 -L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~  144 (281)
                       ++++++ .+..++.  .+..+++|++|++++|..++.++ ..+..+++|++|+++++......+.. ..+++|++|+++
T Consensus       128 ~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          128 FLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence             777765 4556665  55667888888888876565553 56778888888888875433332332 567788888888


Q ss_pred             CCCCccccchhhhccCCCcceEEeecCCCCCccCCC-----------------------------------CCCCccEEe
Q 023528          145 DLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-----------------------------------FPASLTQLG  189 (281)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------------------~~~~L~~L~  189 (281)
                      +|. ++.++...+..+++|+.|++++ + .++.++.                                   ..++|+.|+
T Consensus       207 ~n~-l~~~~~~~~~~~~~L~~L~L~~-n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          207 MKQ-HILLLEIFVDVTSSVECLELRD-T-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             CSC-STTHHHHHHHHTTTEEEEEEES-C-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCc-cccchhhhhhhcccccEEECCC-C-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence            854 4556554556688899999987 3 4433221                                   245899999


Q ss_pred             ccCCCCCccccccC-CCCCCcCEEeccCCCCc
Q 023528          190 ISDMPTLKCLSSVG-ENLTSLETLDLSNCPKL  220 (281)
Q Consensus       190 l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l  220 (281)
                      +++ +.++.+|... +.+++|++|++++|+-.
T Consensus       284 Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          284 FSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCC-CCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            999 5888999665 88999999999997533

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=6e-15  Score=122.96  Aligned_cols=208  Identities=18%  Similarity=0.197  Sum_probs=146.0

Q ss_pred             CCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCc
Q 023528           14 SRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKL   91 (281)
Q Consensus        14 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L   91 (281)
                      +++.+ |. .++++|++|+++++. +..++  .++.+++ |++|+++++. +..++              +..+..+++|
T Consensus        18 ~l~~i-p~-~l~~~l~~L~ls~n~-l~~~~~~~~~~l~~-L~~L~l~~n~-l~~~~--------------~~~~~~l~~L   78 (276)
T 2z62_A           18 NFYKI-PD-NLPFSTKNLDLSFNP-LRHLGSYSFFSFPE-LQVLDLSRCE-IQTIE--------------DGAYQSLSHL   78 (276)
T ss_dssp             CCSSC-CS-SSCTTCCEEECTTCC-CCEECTTTTTTCTT-CSEEECTTCC-CCEEC--------------TTTTTTCTTC
T ss_pred             Ccccc-CC-CCCCCccEEECCCCc-ccccCHhHhccccC-CcEEECCCCc-CCccC--------------HHHccCCcCC
Confidence            35567 53 456799999999886 66665  4788999 9999999864 22221              1234456799


Q ss_pred             cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCcc-ccchhhhccCCCcceEEe
Q 023528           92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRI  168 (281)
Q Consensus        92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l  168 (281)
                      ++|++++|......+..+..+++|++|+++++ .+..++.  ...+++|++|++++|.... .++ ..+..+++|++|++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~L  156 (276)
T 2z62_A           79 STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDL  156 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEEC
T ss_pred             CEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEEC
Confidence            99999996543333467889999999999885 4555544  3567899999999865433 234 36888999999999


Q ss_pred             ecCCCCCccCCC----CCCCcc----EEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecC
Q 023528          169 RGGCPDLVSSPR----FPASLT----QLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGID  238 (281)
Q Consensus       169 ~~~~~~~~~~~~----~~~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~  238 (281)
                      ++  +.++.++.    ...+++    .|++++ +.++.++.......+|++|++++| .++.++...  ..++|++|++.
T Consensus       157 s~--N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          157 SS--NKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             CS--SCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECC
T ss_pred             CC--CCCCcCCHHHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEcc
Confidence            98  45555442    122344    889998 678888755545558999999995 577777643  36789999988


Q ss_pred             ------CCchHHHH
Q 023528          239 ------DCPLMEKR  246 (281)
Q Consensus       239 ------~c~~l~~~  246 (281)
                            +|+.++..
T Consensus       233 ~N~~~c~c~~l~~l  246 (276)
T 2z62_A          233 TNPWDCSCPRIDYL  246 (276)
T ss_dssp             SSCBCCCTTTTHHH
T ss_pred             CCcccccCCchHHH
Confidence                  46655543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.66  E-value=1.5e-14  Score=129.15  Aligned_cols=188  Identities=29%  Similarity=0.279  Sum_probs=84.9

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCCCCccCCCCCCCCCCccEEEeccCc
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCK  100 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  100 (281)
                      +|++|++++|. +..+|.++.+++ |++|++++|. +..+|..      ++++++ .+..+|. +..+++|++|++++| 
T Consensus       174 ~L~~L~L~~n~-l~~l~~~~~l~~-L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N-  247 (454)
T 1jl5_A          174 SLEFIAAGNNQ-LEELPELQNLPF-LTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN-  247 (454)
T ss_dssp             TCCEEECCSSC-CSSCCCCTTCTT-CCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-
T ss_pred             cccEEECcCCc-CCcCccccCCCC-CCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-
Confidence            55555555543 444455555566 6666666554 2222221      555554 3335552 445566666666664 


Q ss_pred             ccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC
Q 023528          101 NLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR  180 (281)
Q Consensus       101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  180 (281)
                      .+..+|..   +++|++|+++++ .+..+|.  .+++|+.|++++|. ++.++.    ..++|++|++++  +.+..++.
T Consensus       248 ~l~~l~~~---~~~L~~L~l~~N-~l~~l~~--~~~~L~~L~ls~N~-l~~l~~----~~~~L~~L~l~~--N~l~~i~~  314 (454)
T 1jl5_A          248 LLKTLPDL---PPSLEALNVRDN-YLTDLPE--LPQSLTFLDVSENI-FSGLSE----LPPNLYYLNASS--NEIRSLCD  314 (454)
T ss_dssp             CCSSCCSC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSEESC----CCTTCCEEECCS--SCCSEECC
T ss_pred             cCCccccc---ccccCEEECCCC-cccccCc--ccCcCCEEECcCCc-cCcccC----cCCcCCEEECcC--CcCCcccC
Confidence            33334422   245555555553 2333332  23555666665533 222110    013444444443  22333333


Q ss_pred             CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCC
Q 023528          181 FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDC  240 (281)
Q Consensus       181 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c  240 (281)
                      .+.+|+.|++++ +.+..+|   ..+++|++|++++| .++.+|.  .+++|++|+++++
T Consensus       315 ~~~~L~~L~Ls~-N~l~~lp---~~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N  367 (454)
T 1jl5_A          315 LPPSLEELNVSN-NKLIELP---ALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN  367 (454)
T ss_dssp             CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             CcCcCCEEECCC-Ccccccc---ccCCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence            333455555554 3344444   12344555555543 3444444  3345555555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=1.4e-15  Score=137.03  Aligned_cols=210  Identities=14%  Similarity=0.080  Sum_probs=122.8

Q ss_pred             cceeecccCCCCCcccCCC-CCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528            3 QDISRSSSGSTSRTPFSSE-NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF   81 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l   81 (281)
                      +++.|+++++. ++.++|. ..-.++|++|++++|. +...++++.+++ |++|++++|. +..               +
T Consensus        35 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~-L~~L~Ls~N~-l~~---------------l   95 (487)
T 3oja_A           35 NVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLST-LRTLDLNNNY-VQE---------------L   95 (487)
T ss_dssp             GCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTT-CCEEECCSSE-EEE---------------E
T ss_pred             CccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCC-CCEEEecCCc-CCC---------------C
Confidence            45555555532 4444221 1111355566665554 333333555555 6665555543 222               2


Q ss_pred             CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528           82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR  159 (281)
Q Consensus        82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~  159 (281)
                      +.    .++|++|++++|. +..++.  ..+++|+.|+++++ .+..++..  +.+++|+.|++++|......+......
T Consensus        96 ~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           96 LV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             EE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             CC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence            21    2577888887753 343432  24577888888775 33333222  456788888888754443333322236


Q ss_pred             CCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEe
Q 023528          160 FACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLG  236 (281)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~  236 (281)
                      +++|+.|++++  +.+..++.  .+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+|.. +.+++|+.|+
T Consensus       168 l~~L~~L~Ls~--N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          168 SDTLEHLNLQY--NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD  243 (487)
T ss_dssp             TTTCCEEECTT--SCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred             CCcccEEecCC--CccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEE
Confidence            78888888887  44555444  466888888888 567777655677788888888884 56666652 3357788888


Q ss_pred             cCCCchH
Q 023528          237 IDDCPLM  243 (281)
Q Consensus       237 l~~c~~l  243 (281)
                      +++++..
T Consensus       244 l~~N~l~  250 (487)
T 3oja_A          244 LRGNGFH  250 (487)
T ss_dssp             CTTCCBC
T ss_pred             cCCCCCc
Confidence            8877644

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=5.8e-15  Score=127.39  Aligned_cols=216  Identities=18%  Similarity=0.147  Sum_probs=157.1

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES   80 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~   80 (281)
                      .+++++ |.+ +++++++|+++++. ++.+|.  |+.+++ |++|+|+++...+.+|.+          +...++..+..
T Consensus        19 ~~Lt~i-P~~-l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           19 SKVTEI-PSD-LPRNAIELRFVLTK-LRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             TTCCSC-CTT-CCTTCSEEEEESCC-CSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCCcc-CcC-cCCCCCEEEccCCc-CCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence            458888 643 46799999999876 888875  788999 999999998766655532          23333456666


Q ss_pred             CCC-CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchh
Q 023528           81 FPE-GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        81 l~~-~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                      ++. .+..+++|++|++++| .+..+| ..+.....+..+++.++..+..++..   .....++.|++++ +.++.++..
T Consensus        95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~  172 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS  172 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT
T ss_pred             cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh
Confidence            654 4456889999999985 455554 34445667778888776777777654   2335678888887 455666543


Q ss_pred             hhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCC
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKS  231 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~  231 (281)
                       .....+|+++++.+ ++.++.+|.    ..++|+.|++++ +.++.+|.  ..+.+|+.|.+.++.+++.+|....+++
T Consensus       173 -~f~~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~  247 (350)
T 4ay9_X          173 -AFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVA  247 (350)
T ss_dssp             -SSTTEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCS
T ss_pred             -hccccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcC
Confidence             33456788898887 778888875    456899999998 68888884  3467788888888888888887555788


Q ss_pred             CcEEecCC
Q 023528          232 LLRLGIDD  239 (281)
Q Consensus       232 L~~L~l~~  239 (281)
                      |+.+++.+
T Consensus       248 L~~l~l~~  255 (350)
T 4ay9_X          248 LMEASLTY  255 (350)
T ss_dssp             CCEEECSC
T ss_pred             hhhCcCCC
Confidence            99988865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=139.56  Aligned_cols=206  Identities=19%  Similarity=0.149  Sum_probs=117.6

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecCCCCCccC---CCCCCCCCCccEEEe
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFGCPNLESF---PEGGLPSTKLTRLTI   96 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~~~l~~l---~~~~~~~~~L~~L~l   96 (281)
                      +|++|++++|. +..+|. ..+++ |++|++.++......+..       ++++++. +...   +.....+++|++|++
T Consensus       305 ~L~~L~l~~n~-~~~l~~-~~l~~-L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l  380 (570)
T 2z63_A          305 GWQHLELVNCK-FGQFPT-LKLKS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL  380 (570)
T ss_dssp             CCSEEEEESCB-CSSCCB-CBCSS-CCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEEC
T ss_pred             CccEEeeccCc-ccccCc-ccccc-cCEEeCcCCccccccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEEC
Confidence            55555555554 334443 34555 555555554432222211       4444332 1111   222334566777777


Q ss_pred             ccCcccccccccCcCCCCccEEeecCCcCCcccC--CCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCC
Q 023528           97 WKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFP--EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPD  174 (281)
Q Consensus        97 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  174 (281)
                      ++|. +..+|..+..+++|++|+++++......+  ....+++|+.|++++|......+ ..+..+++|++|++++ |.-
T Consensus       381 ~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l  457 (570)
T 2z63_A          381 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAG-NSF  457 (570)
T ss_dssp             CSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTT-CEE
T ss_pred             CCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcC-CcC
Confidence            7743 34444446677777777777643222222  12456788888888764433333 3577788888888887 433


Q ss_pred             C-ccCCC---CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528          175 L-VSSPR---FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGIDDCP  241 (281)
Q Consensus       175 ~-~~~~~---~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~  241 (281)
                      . ..+|.   ..++|+.|++++| .++.+ |..+..+++|++|++++| .++.++...  .+++|++|++.+++
T Consensus       458 ~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          458 QENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            2 23443   4568888888884 55555 433377888888888885 566665432  25788888887744

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=1.4e-14  Score=131.41  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=39.8

Q ss_pred             CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC---CC---CCCCccEEeccCCCCCcc-ccccC-CC
Q 023528          134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS---PR---FPASLTQLGISDMPTLKC-LSSVG-EN  205 (281)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~---~~~~L~~L~l~~c~~l~~-l~~~~-~~  205 (281)
                      .+++|++|++++|......+ ..+..+++|++|++++ + .+..+   |.   ..++|++|+++++ .+.. +|... ..
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~-N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~  397 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQM-N-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSW  397 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCS-S-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred             hCCcccEEEeECCccChhhh-hhhccCCCCCEEEccC-C-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhcc
Confidence            44566666666643333232 2455666666666665 2 33321   11   3445666666663 3443 55332 44


Q ss_pred             CCCcCEEeccCC
Q 023528          206 LTSLETLDLSNC  217 (281)
Q Consensus       206 l~~L~~L~l~~c  217 (281)
                      +++|++|++++|
T Consensus       398 l~~L~~L~Ls~N  409 (520)
T 2z7x_B          398 TKSLLSLNMSSN  409 (520)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CccCCEEECcCC
Confidence            555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.65  E-value=2.2e-14  Score=134.14  Aligned_cols=209  Identities=17%  Similarity=0.101  Sum_probs=124.7

Q ss_pred             CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcc-hhcccc---------c---eeecCCCCCccCCCCCCCCCC
Q 023528           26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSK-LESLAE---------R---IWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~-l~~~p~---------~---L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      ++|++|++++|. +..++.  +..+++ |++|++++|.. +..++.         .   ++++++......+..+..+++
T Consensus       329 ~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          329 KCLEHLNMEDND-IPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TTCCEEECCSCC-BCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCEEECCCCc-cCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            355555555544 333322  555666 77777666531 111110         0   555555433333445556777


Q ss_pred             ccEEEeccCccccccc-ccCcCCCCccEEeecCCcCC--------------------------cccCCC-CCCCCcCeEE
Q 023528           91 LTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSL--------------------------VSFPED-GFPTNLQSLV  142 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l--------------------------~~l~~~-~~~~~L~~L~  142 (281)
                      |++|++++|.....+| ..+..+++|++|+++++...                          ...|.. ..+++|+.|+
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence            8888887765444444 45566667777766664211                          112211 3456777777


Q ss_pred             ecCCCCccccchhhhccCCCcceEEeecCCCCCccCC------------CCCCCccEEeccCCCCCccccccC-CCCCCc
Q 023528          143 VDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSP------------RFPASLTQLGISDMPTLKCLSSVG-ENLTSL  209 (281)
Q Consensus       143 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L  209 (281)
                      +++| .++.++...+..+++|++|++++  +.+..++            ...++|+.|++++ +.++.+|... ..+++|
T Consensus       487 Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          487 LSNN-NIANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred             CCCC-CCCcCChhhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCc
Confidence            7774 34455555577778888888887  3343321            1346788888888 5777887554 788889


Q ss_pred             CEEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528          210 ETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP  241 (281)
Q Consensus       210 ~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~  241 (281)
                      ++|++++ ++++.++...+  +++|++|+++++.
T Consensus       563 ~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          563 KIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence            9999987 56777776433  5789999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=5.6e-15  Score=134.73  Aligned_cols=118  Identities=21%  Similarity=0.113  Sum_probs=69.8

Q ss_pred             cceeecccCCCCCcccCCCC-CccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------
Q 023528            3 QDISRSSSGSTSRTPFSSEN-ELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------   69 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------   69 (281)
                      +++.|+++++. ++.+++.. .-.++|++|++++|. +..++.  ++.+++ |++|+++++.. ..++..          
T Consensus        27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~l-~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGS-LEHLDLSDNHL-SSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTT-CCEEECTTSCC-CSCCHHHHTTCTTCCE
T ss_pred             CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhcccccc-CCEEECCCCcc-CccCHHHhccCCCCcE
Confidence            56667777654 55552211 122577777777765 444432  666777 77777777642 222211          


Q ss_pred             eeecCCCCCc-cCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCc
Q 023528           70 IWIFGCPNLE-SFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECR  124 (281)
Q Consensus        70 L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~  124 (281)
                      ++++++.... ..+..+..+++|++|++++|..++.+| ..+..+++|++|+++++.
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            6666653222 234556667777777777766556555 456777777777777643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=4e-14  Score=117.69  Aligned_cols=190  Identities=26%  Similarity=0.292  Sum_probs=144.3

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC-CCCCCCCccEEEeccCccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKA  104 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~  104 (281)
                      ...+.+++++.. ++.+|.  .+|.++++|+++++.                +..++. .+..+++|++|+++++ .++.
T Consensus        16 ~~~~~l~~~~~~-l~~ip~--~~~~~l~~L~l~~n~----------------l~~~~~~~~~~l~~L~~L~l~~n-~l~~   75 (270)
T 2o6q_A           16 NNKNSVDCSSKK-LTAIPS--NIPADTKKLDLQSNK----------------LSSLPSKAFHRLTKLRLLYLNDN-KLQT   75 (270)
T ss_dssp             TTTTEEECTTSC-CSSCCS--CCCTTCSEEECCSSC----------------CSCCCTTSSSSCTTCCEEECCSS-CCSC
T ss_pred             CCCCEEEccCCC-CCccCC--CCCCCCCEEECcCCC----------------CCeeCHHHhcCCCCCCEEECCCC-ccCe
Confidence            467889988765 777775  233449999998864                233332 4456789999999995 5666


Q ss_pred             cccc-CcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-
Q 023528          105 LPNC-IHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-  180 (281)
Q Consensus       105 lp~~-~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-  180 (281)
                      +|.. +..+++|++|+++++ .+..++..  ..+++|++|++++| .++.++...+..+++|++|++++  +.+..++. 
T Consensus        76 i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~  151 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY--NELQSLPKG  151 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTT
T ss_pred             eChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC--CcCCccCHh
Confidence            7654 578999999999985 56666643  56789999999984 55666655688999999999998  46666654 


Q ss_pred             ---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528          181 ---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP  241 (281)
Q Consensus       181 ---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~  241 (281)
                         ..++|+.|++++ +.++.++... ..+++|++|++++| .++.++...+  +++|++|++.+++
T Consensus       152 ~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          152 VFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence               467999999999 5788887554 78999999999995 6777776433  6799999998754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=2.9e-15  Score=127.07  Aligned_cols=186  Identities=19%  Similarity=0.157  Sum_probs=146.1

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      ++|++|++++|. +..++.+..+++ |++|++++|. +.               .++. ...+++|++|++++|. +..+
T Consensus        41 ~~L~~L~l~~~~-i~~l~~~~~l~~-L~~L~L~~n~-i~---------------~~~~-~~~l~~L~~L~L~~n~-l~~~  100 (308)
T 1h6u_A           41 DGITTLSAFGTG-VTTIEGVQYLNN-LIGLELKDNQ-IT---------------DLAP-LKNLTKITELELSGNP-LKNV  100 (308)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CC---------------CCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred             CCcCEEEeeCCC-ccCchhhhccCC-CCEEEccCCc-CC---------------CChh-HccCCCCCEEEccCCc-CCCc
Confidence            599999999886 777888888999 9999998864 22               2222 4456799999999965 6666


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      + .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++.  +..+++|++|++++ + .+..++.  ..+
T Consensus       101 ~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~-n-~l~~~~~l~~l~  173 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGN-A-QVSDLTPLANLS  173 (308)
T ss_dssp             G-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCS-S-CCCCCGGGTTCT
T ss_pred             h-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccC-C-cCCCChhhcCCC
Confidence            4 6888999999999985 5666666678899999999985 4555553  78899999999998 4 5555554  567


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      +|+.|++++ +.++.++ ....+++|++|++++| .+..++....+++|++|++.+++
T Consensus       174 ~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          174 KLTTLKADD-NKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TCCEEECCS-SCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             CCCEEECCC-CccCcCh-hhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence            899999999 5788777 3678899999999995 56776654457899999988876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.64  E-value=1.1e-14  Score=133.45  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=15.2

Q ss_pred             CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCC
Q 023528           26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDC   60 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~   60 (281)
                      ++|++|++++|. +..+++  ++.+++ |++|+++++
T Consensus        76 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~L~Ls~N  110 (562)
T 3a79_B           76 SELRVLRLSHNR-IRSLDFHVFLFNQD-LEYLDVSHN  110 (562)
T ss_dssp             TTCCEEECCSCC-CCEECTTTTTTCTT-CCEEECTTS
T ss_pred             CCccEEECCCCC-CCcCCHHHhCCCCC-CCEEECCCC
Confidence            355555555443 333321  444445 555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.63  E-value=1.4e-14  Score=121.83  Aligned_cols=190  Identities=22%  Similarity=0.175  Sum_probs=144.9

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      +++++++++++. ++.+|. +-.++ +++|+++++. +..++              +..+..+++|++|+++++ .+..+
T Consensus        10 ~~l~~l~~~~~~-l~~ip~-~~~~~-l~~L~L~~N~-l~~~~--------------~~~~~~l~~L~~L~L~~n-~l~~~   70 (290)
T 1p9a_G           10 ASHLEVNCDKRN-LTALPP-DLPKD-TTILHLSENL-LYTFS--------------LATLMPYTRLTQLNLDRA-ELTKL   70 (290)
T ss_dssp             TTCCEEECTTSC-CSSCCS-CCCTT-CCEEECTTSC-CSEEE--------------GGGGTTCTTCCEEECTTS-CCCEE
T ss_pred             CCccEEECCCCC-CCcCCC-CCCCC-CCEEEcCCCc-CCccC--------------HHHhhcCCCCCEEECCCC-ccCcc
Confidence            488999998765 777775 11245 9999998865 22211              123345679999999995 56666


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----  180 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----  180 (281)
                      +.. ..+++|++|+++++ .+..+|.. ..+++|+.|++++ +.++.++...+..+++|++|++++  +.+..++.    
T Consensus        71 ~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~  145 (290)
T 1p9a_G           71 QVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLT  145 (290)
T ss_dssp             ECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTTT
T ss_pred             cCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCC--CCCCccChhhcc
Confidence            543 78999999999984 66677764 5788999999998 456666655788999999999998  56666665    


Q ss_pred             CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC-CCCCcEEecCCCc
Q 023528          181 FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL-PKSLLRLGIDDCP  241 (281)
Q Consensus       181 ~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~-~~~L~~L~l~~c~  241 (281)
                      ..++|+.|++++ +.++.+|... ..+++|++|++++ +.++.+|.... ..+|+++++.+++
T Consensus       146 ~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          146 PTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence            457899999999 6899998665 7899999999999 57788887433 5689999998643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=6.5e-15  Score=134.79  Aligned_cols=232  Identities=15%  Similarity=0.074  Sum_probs=162.1

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc-------eeecCCCCCccCCCCCCCCCCccEEEec
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER-------IWIFGCPNLESFPEGGLPSTKLTRLTIW   97 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~~~l~~l~~~~~~~~~L~~L~l~   97 (281)
                      ++|++|+++++. +..+|. +..+ + |++|++++|. +..+|..       +++.++.....++.  ..+++|++|+++
T Consensus       282 ~~L~~L~l~~~~-l~~l~~~~~~~-~-L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~  355 (570)
T 2z63_A          282 TNVSSFSLVSVT-IERVKDFSYNF-G-WQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS  355 (570)
T ss_dssp             TTCSEEEEESCE-ECSCCBCCSCC-C-CSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred             CcccEEEecCcc-chhhhhhhccC-C-ccEEeeccCc-ccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence            689999999886 566665 4555 6 9999999986 3455543       77777654444443  557899999999


Q ss_pred             cCcccccc---cccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCC
Q 023528           98 KCKNLKAL---PNCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCP  173 (281)
Q Consensus        98 ~c~~l~~l---p~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  173 (281)
                      +|.. ..+   |..+..+++|++|+++++ .+..++. ...+++|+.|++++|......+...+..+++|++|++++ |.
T Consensus       356 ~n~l-~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~  432 (570)
T 2z63_A          356 RNGL-SFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-TH  432 (570)
T ss_dssp             SSCC-BEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT-SC
T ss_pred             CCcc-CccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC-Cc
Confidence            9653 333   566788999999999986 3444443 356789999999986544433334578899999999998 64


Q ss_pred             CCccCCC---CCCCccEEeccCCCCC-ccccccCCCCCCcCEEeccCCCCcccc-cC-CCCCCCCcEEecCCCchHHHHH
Q 023528          174 DLVSSPR---FPASLTQLGISDMPTL-KCLSSVGENLTSLETLDLSNCPKLKYF-SK-QGLPKSLLRLGIDDCPLMEKRW  247 (281)
Q Consensus       174 ~~~~~~~---~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~i-~~-~~~~~~L~~L~l~~c~~l~~~~  247 (281)
                      .....+.   ..++|+.|++++|... ..+|..+..+++|++|++++| .+..+ +. .+.+++|++|++.+|..- .. 
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~-  509 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLK-SV-  509 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-CC-
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCC-CC-
Confidence            4333443   4679999999996433 357755589999999999996 45555 33 233689999999998521 11 


Q ss_pred             hhcCCCCCcccccccccccccEEEECCEEee
Q 023528          248 IKADYPYTFATRYWPMITHIPCVIVNGRFVF  278 (281)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (281)
                         ..      ..+..+.++..+.+.++.+.
T Consensus       510 ---~~------~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          510 ---PD------GIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             ---CT------TTTTTCTTCCEEECCSSCBC
T ss_pred             ---CH------HHhhcccCCcEEEecCCccc
Confidence               00      22445667777777776543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=1.2e-14  Score=118.58  Aligned_cols=193  Identities=16%  Similarity=0.126  Sum_probs=142.7

Q ss_pred             ccceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCC
Q 023528            2 KQDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPN   77 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~   77 (281)
                      ++++.|+++++. ++.+ +...+  .++|++|+++++..++.++.  +..+++ |++|++++|..++.++.         
T Consensus        31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~l~~~n~l~~i~~---------   98 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDP---------   98 (239)
T ss_dssp             TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT-CCEEEEEEETTCCEECT---------
T ss_pred             CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC-CcEEECCCCCCeeEcCH---------
Confidence            357888998754 8888 43333  37999999999876777764  778899 99999987544444321         


Q ss_pred             CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCcc---EEeecCCcCCcccCCC--CCCCCcC-eEEecCCCCccc
Q 023528           78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLL---HLEIRECRSLVSFPED--GFPTNLQ-SLVVDDLKISKP  151 (281)
Q Consensus        78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~---~L~l~~~~~l~~l~~~--~~~~~L~-~L~l~~~~~~~~  151 (281)
                           ..+..+++|++|++++| .++.+|. +..+++|+   +|++++++.++.++..  ..+++|+ .+++++| .++.
T Consensus        99 -----~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~  170 (239)
T 2xwt_C           99 -----DALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTS  170 (239)
T ss_dssp             -----TSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCE
T ss_pred             -----HHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcc
Confidence                 12234679999999996 4566775 77788887   9999986577777764  5678999 9999885 4556


Q ss_pred             cchhhhccCCCcceEEeecCCCCCccCCC----CC-CCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528          152 LFEWGLDRFACLRELRIRGGCPDLVSSPR----FP-ASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK  219 (281)
Q Consensus       152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  219 (281)
                      ++...+.. ++|++|++++ +..++.++.    .. ++|+.|++++ +.++.+|..  .+++|+.|++.++..
T Consensus       171 i~~~~~~~-~~L~~L~L~~-n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          171 VQGYAFNG-TKLDAVYLNK-NKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             ECTTTTTT-CEEEEEECTT-CTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             cCHhhcCC-CCCCEEEcCC-CCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence            66555555 7899999998 544666654    34 7899999999 688888843  688999999988643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=1.2e-14  Score=121.05  Aligned_cols=168  Identities=25%  Similarity=0.288  Sum_probs=124.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      ++|+.|+++++. +..++.++.+++ |++|+++++. +..               ++ ....+++|++|++++| .+..+
T Consensus        41 ~~L~~L~l~~~~-i~~~~~l~~l~~-L~~L~l~~n~-l~~---------------~~-~l~~l~~L~~L~L~~n-~l~~~  100 (272)
T 3rfs_A           41 NSIDQIIANNSD-IKSVQGIQYLPN-VRYLALGGNK-LHD---------------IS-ALKELTNLTYLILTGN-QLQSL  100 (272)
T ss_dssp             TTCCEEECTTSC-CCCCTTGGGCTT-CCEEECTTSC-CCC---------------CG-GGTTCTTCCEEECTTS-CCCCC
T ss_pred             cceeeeeeCCCC-cccccccccCCC-CcEEECCCCC-CCC---------------ch-hhcCCCCCCEEECCCC-ccCcc
Confidence            589999999876 777777888899 9999998865 111               11 2334678999999986 44555


Q ss_pred             c-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          106 P-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       106 p-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                      + ..+..+++|++|+++++ .+..++..  ..+++|++|++++| .++.++...+..+++|++|++++ + .++.++.  
T Consensus       101 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~  176 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSY-N-QLQSLPEGV  176 (272)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-S-CCCCCCTTT
T ss_pred             ChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCC-C-CcCccCHHH
Confidence            4 44678899999999885 45555543  56789999999885 55566655678889999999998 4 5555554  


Q ss_pred             --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                        ..++|++|++++ +.++.++... ..+++|++|++++|+
T Consensus       177 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence              457899999998 4677776554 788999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=2.5e-14  Score=130.43  Aligned_cols=206  Identities=17%  Similarity=0.203  Sum_probs=143.9

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      ..++.+ |.. ++++|++|+++++. +..++  .++.+++ |++|+++++. +..+              .+..+..+++
T Consensus        15 ~~l~~i-p~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~-i~~~--------------~~~~~~~l~~   75 (549)
T 2z81_A           15 RSFTSI-PSG-LTAAMKSLDLSFNK-ITYIGHGDLRACAN-LQVLILKSSR-INTI--------------EGDAFYSLGS   75 (549)
T ss_dssp             SCCSSC-CSC-CCTTCCEEECCSSC-CCEECSSTTSSCTT-CCEEECTTSC-CCEE--------------CTTTTTTCTT
T ss_pred             Cccccc-ccc-CCCCccEEECcCCc-cCccChhhhhcCCc-ccEEECCCCC-cCcc--------------Chhhcccccc
Confidence            457788 543 44799999999987 66553  3788999 9999999864 2221              1234455778


Q ss_pred             ccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCccc--CC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           91 LTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSF--PE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      |++|++++|. +..++ ..+..+++|++|+++++ .+..+  +. .+.+++|++|++++|...+.++...+.++++|++|
T Consensus        76 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           76 LEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             CCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            9999999964 44444 45888999999999885 34432  22 36678999999998776777766678888999999


Q ss_pred             EeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCccccc-----CCCCCCCCcEEec
Q 023528          167 RIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFS-----KQGLPKSLLRLGI  237 (281)
Q Consensus       167 ~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~-----~~~~~~~L~~L~l  237 (281)
                      ++++ +.-....+.   ..++|++|++++ +....+|... ..+++|++|++++| .+..++     ....+++|++|++
T Consensus       154 ~L~~-n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l  230 (549)
T 2z81_A          154 EIKA-LSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAF  230 (549)
T ss_dssp             EEEE-TTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred             eccC-CcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceec
Confidence            9988 443333443   456788888888 4566666444 56888999999885 444432     1223567888888


Q ss_pred             CCCch
Q 023528          238 DDCPL  242 (281)
Q Consensus       238 ~~c~~  242 (281)
                      .++..
T Consensus       231 ~~n~l  235 (549)
T 2z81_A          231 RGSVL  235 (549)
T ss_dssp             ESCEE
T ss_pred             ccccc
Confidence            87753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=6.7e-15  Score=124.99  Aligned_cols=211  Identities=15%  Similarity=0.093  Sum_probs=102.1

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc-CC-------CcCCcCcEEEecCCcchhccccceee
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW-NG-------NLPRALKYLYVKDCSKLESLAERIWI   72 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~-~~-------~l~~~L~~L~l~~~~~l~~~p~~L~l   72 (281)
                      +++.+.++++. + .+ |. .++..|+.|+++++. +.  .++. +.       .+++ |++|+++++...+.+|     
T Consensus        44 ~L~~l~l~~n~-l-~~-p~-~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~-----  112 (312)
T 1wwl_A           44 SLEYLLKRVDT-E-AD-LG-QFTDIIKSLSLKRLT-VRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAP-----  112 (312)
T ss_dssp             ECTTHHHHCCT-T-CC-CH-HHHHHHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCC-----
T ss_pred             CceeEeecccc-c-cc-HH-HHHHHHhhccccccc-ccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhH-----
Confidence            35555555544 3 44 32 233457777777765 32  2332 11       4677 8888887765222222     


Q ss_pred             cCCCCCccCCCCC--CCCCCccEEEeccCcccccccccCcCC-----CCccEEeecCCcCCcccCC--CCCCCCcCeEEe
Q 023528           73 FGCPNLESFPEGG--LPSTKLTRLTIWKCKNLKALPNCIHNL-----TSLLHLEIRECRSLVSFPE--DGFPTNLQSLVV  143 (281)
Q Consensus        73 ~~~~~l~~l~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l  143 (281)
                                ...  ..+++|++|++++|. +..+|..+..+     ++|++|+++++ .+..++.  .+.+++|++|++
T Consensus       113 ----------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          113 ----------PPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             ----------CCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEEC
T ss_pred             ----------HHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEEC
Confidence                      221  334566666666643 33334444433     56666666653 3333332  134556666666


Q ss_pred             cCCCCccc--cc-hhhhccCCCcceEEeecCCCCCccCCC-------CCCCccEEeccCCCCCcccc-cc-CCCCCCcCE
Q 023528          144 DDLKISKP--LF-EWGLDRFACLRELRIRGGCPDLVSSPR-------FPASLTQLGISDMPTLKCLS-SV-GENLTSLET  211 (281)
Q Consensus       144 ~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~~l~-~~-~~~l~~L~~  211 (281)
                      ++|.....  ++ ...+..+++|++|++++  +.++.++.       ..++|+.|++++ +.++..+ .. +..+++|++
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~  257 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRN--AGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNS  257 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTT--SCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCE
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCC--CcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCE
Confidence            65443322  11 11124556666666665  23332211       234566666666 3444322 11 144556666


Q ss_pred             EeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          212 LDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       212 L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      |++++| .++.+|.... ++|++|+++++.
T Consensus       258 L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~  285 (312)
T 1wwl_A          258 LNLSFT-GLKQVPKGLP-AKLSVLDLSYNR  285 (312)
T ss_dssp             EECTTS-CCSSCCSSCC-SEEEEEECCSSC
T ss_pred             EECCCC-ccChhhhhcc-CCceEEECCCCC
Confidence            666663 3445554222 556666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=4.7e-14  Score=117.40  Aligned_cols=144  Identities=26%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE  165 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  165 (281)
                      +++|++|++++|. +..+ ..+..+++|++|+++++ .++.++..  ..+++|++|++++| .++.++...+..+++|++
T Consensus        62 l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           62 LPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             CTTCCEEECTTSC-CCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCC-CCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCE
Confidence            4566666666643 3333 25556666666666664 34444432  44566666666663 333444334566666666


Q ss_pred             EEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecC
Q 023528          166 LRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGID  238 (281)
Q Consensus       166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~  238 (281)
                      |++++ + .++.++.    ..++|+.|++++ +.++.++... +.+++|++|++++| .+..++..  +.+++|++|++.
T Consensus       138 L~L~~-n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          138 LNLAH-N-QLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             EECCS-S-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             EECCC-C-ccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEcc
Confidence            66666 3 4444432    345666666666 3455555343 56666666666664 34444432  224566666665


Q ss_pred             C
Q 023528          239 D  239 (281)
Q Consensus       239 ~  239 (281)
                      +
T Consensus       214 ~  214 (272)
T 3rfs_A          214 D  214 (272)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=3.4e-14  Score=118.40  Aligned_cols=190  Identities=19%  Similarity=0.196  Sum_probs=138.5

Q ss_pred             cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528            3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL   78 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l   78 (281)
                      .++.|+++++. ++.+++ ..+  .++|++|++++|. +..++.  ++.+++ |++|+++++. +               
T Consensus        29 ~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~L~~n~-l---------------   88 (276)
T 2z62_A           29 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSH-LSTLILTGNP-I---------------   88 (276)
T ss_dssp             TCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTT-CCEEECTTCC-C---------------
T ss_pred             CccEEECCCCc-ccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcC-CCEEECCCCc-c---------------
Confidence            57889998754 777733 222  3699999999986 666654  788999 9999998865 2               


Q ss_pred             ccCC-CCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcc--cCCC-CCCCCcCeEEecCCCCccccc
Q 023528           79 ESFP-EGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVS--FPED-GFPTNLQSLVVDDLKISKPLF  153 (281)
Q Consensus        79 ~~l~-~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~  153 (281)
                      ..++ ..+..+++|++|++++|. +..++ ..+..+++|++|+++++ .+..  +|.. ..+++|++|++++|. ++.++
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~  165 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY  165 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred             CccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCC
Confidence            2222 334557799999999965 44444 46889999999999985 4444  3432 567999999999954 44444


Q ss_pred             hhhhccCCCcc----eEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          154 EWGLDRFACLR----ELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       154 ~~~~~~l~~L~----~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      ...+..+++|+    .|++++  +.+..++.   ...+|+.|++++ +.++.+|... ..+++|++|++++++
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~--n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSL--NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCS--SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             HHHhhhhhhccccceeeecCC--CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence            44555566666    788887  55666654   334899999999 5788888665 889999999999854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=1.7e-13  Score=131.17  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCcc
Q 023528          113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLT  186 (281)
Q Consensus       113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~  186 (281)
                      ++|+.|+++++ .+..++..  ..+++|+.|++++|. ++..+...+..+++|++|++++ + .++.+ +.   ..++|+
T Consensus       266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSY-N-LLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEES-C-CCSCCCSCSCSSCTTCC
T ss_pred             CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCC-C-CCCccCHHHhcCCCCCC
Confidence            45566666553 22222221  345666666666643 3333223456666666666666 3 33333 21   344666


Q ss_pred             EEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          187 QLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       187 ~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      .|++++ +.++.++... ..+++|++|++++|
T Consensus       342 ~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          342 YIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEECCS-CCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             EEECCC-CCCCccChhhhcCCCCCCEEECCCC
Confidence            666666 3555555333 55666666666663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=8.6e-15  Score=124.32  Aligned_cols=198  Identities=17%  Similarity=0.134  Sum_probs=139.8

Q ss_pred             CcCceeeccCCcCcccccc-C--CCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccc
Q 023528           26 ATLEHLEVTHCSNLAFLSW-N--GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL  102 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~--~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  102 (281)
                      ++|++|++++|.--..+|. +  +.+++ |++|+++++. +..+|..        +..++..  .+++|++|++++|...
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~Ls~N~-l~~~~~~--------~~~l~~~--~~~~L~~L~L~~N~l~  162 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPD-LNILNLRNVS-WATRDAW--------LAELQQW--LKPGLKVLSIAQAHSL  162 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCC-CSEEEEESCB-CSSSSSH--------HHHHHTT--CCTTCCEEEEESCSCC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCC-ccEEEccCCC-CcchhHH--------HHHHHHh--hcCCCcEEEeeCCCCc
Confidence            6999999999873335555 3  78899 9999999875 2222210        1111110  1369999999996543


Q ss_pred             ccccccCcCCCCccEEeecCCcCCcc--cC-CC--CCCCCcCeEEecCCCCc--cccchhhhccCCCcceEEeecCCCCC
Q 023528          103 KALPNCIHNLTSLLHLEIRECRSLVS--FP-ED--GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLRELRIRGGCPDL  175 (281)
Q Consensus       103 ~~lp~~~~~l~~L~~L~l~~~~~l~~--l~-~~--~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~  175 (281)
                      ...|..+..+++|++|+++++...+.  ++ ..  ..+++|++|++++|...  ..++...+..+++|++|++++ + .+
T Consensus       163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N-~l  240 (312)
T 1wwl_A          163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-N-SL  240 (312)
T ss_dssp             CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-S-CC
T ss_pred             cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-C-cC
Confidence            43347888999999999998654433  11 22  56789999999996433  134444456789999999998 4 45


Q ss_pred             ccCC-C----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          176 VSSP-R----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       176 ~~~~-~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      ...+ .    .+++|+.|++++ +.++.+|....  ++|++|++++ ++++.+|....+++|++|++++++
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             CcccchhhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence            4432 2    457999999999 57888884434  7999999999 477877774457899999998876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=4.9e-14  Score=121.58  Aligned_cols=207  Identities=17%  Similarity=0.159  Sum_probs=159.0

Q ss_pred             ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc--------
Q 023528            2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER--------   69 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~--------   69 (281)
                      +.+++|++++. .++.+ |.+.|.  ++|++|++++|...+.++.  +..+++ ++++.+.++..+..++..        
T Consensus        30 ~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT-CCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh-hhhhhcccCCcccccCchhhhhcccc
Confidence            35788899974 58899 555443  6999999999986566664  677888 777666555556666432        


Q ss_pred             --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCC-CCccEEeecCCcCCcccCCC-CCCCCcCeEEe
Q 023528           70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNL-TSLLHLEIRECRSLVSFPED-GFPTNLQSLVV  143 (281)
Q Consensus        70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l  143 (281)
                        ++++++. +..++. ......++..+++.++..+..+|. .+..+ ..++.|++++ ..++.++.. ...++|+.+.+
T Consensus       107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             CEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhh
Confidence              6666653 444443 334456788999988888887764 44554 4688999998 577777765 34578999999


Q ss_pred             cCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          144 DDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      .+++.++.++...|..+++|++|++++  +.++.+|. .+.+|+.|.+.+++.++.+| ....+++|+.+++.+
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            988999999987889999999999998  67888887 77899999999999999999 678899999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=7.9e-16  Score=131.01  Aligned_cols=228  Identities=12%  Similarity=0.007  Sum_probs=158.6

Q ss_pred             ccceeecccCCCCCcccCCC-CCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-----eeecCC
Q 023528            2 KQDISRSSSGSTSRTPFSSE-NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-----IWIFGC   75 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-----L~l~~~   75 (281)
                      ++++.|+++++. ++.+++. ..-.++|++|++++|. +..++.++.+++ |++|+++++. +..++..     ++++++
T Consensus        34 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~-L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLST-LRTLDLNNNY-VQELLVGPSIETLHAANN  109 (317)
T ss_dssp             GGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTT-CCEEECCSSE-EEEEEECTTCCEEECCSS
T ss_pred             CCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCC-CCEEECcCCc-cccccCCCCcCEEECCCC
Confidence            478899999864 6666221 1222699999999987 665556888999 9999999985 4444322     777775


Q ss_pred             CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCcccc
Q 023528           76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPL  152 (281)
Q Consensus        76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~  152 (281)
                      . +..++...  +++|++|++++|......+..+..+++|++|+++++ .+..++..   ..+++|+.|++++|. ++.+
T Consensus       110 ~-l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  184 (317)
T 3o53_A          110 N-ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (317)
T ss_dssp             C-CSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             c-cCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence            3 44444332  568999999996543333457788999999999985 44444322   356899999999954 4444


Q ss_pred             chhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCc-ccccC-CC
Q 023528          153 FEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL-KYFSK-QG  227 (281)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~i~~-~~  227 (281)
                      +  ....+++|++|++++  +.++.++.   ..++|+.|++++ +.++.+|..+..+++|++|+++++.-. ..++. .+
T Consensus       185 ~--~~~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          185 K--GQVVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             E--CCCCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             c--cccccccCCEEECCC--CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            4  345689999999998  56666654   457899999999 588889865688899999999996544 23332 11


Q ss_pred             CCCCCcEEecCCCchH
Q 023528          228 LPKSLLRLGIDDCPLM  243 (281)
Q Consensus       228 ~~~~L~~L~l~~c~~l  243 (281)
                      ..+.|+.+++.++..+
T Consensus       260 ~~~~L~~l~l~~~~~l  275 (317)
T 3o53_A          260 KNQRVQTVAKQTVKKL  275 (317)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             ccccceEEECCCchhc
Confidence            2345555555544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=1e-13  Score=117.54  Aligned_cols=147  Identities=16%  Similarity=0.113  Sum_probs=85.0

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcc--cCCC---CCCCCcCeEEecCCCCccccch---hhhcc
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVS--FPED---GFPTNLQSLVVDDLKISKPLFE---WGLDR  159 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~~~~~---~~~~~  159 (281)
                      +++|++|++++|......|..+..+++|++|+++++...+.  ++..   ..+++|++|++++|. ++.++.   ..+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence            55777777777544333345666777777777776543321  2111   355677777777743 333221   12356


Q ss_pred             CCCcceEEeecCCCCCccC-CC------CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528          160 FACLRELRIRGGCPDLVSS-PR------FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL  232 (281)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~-~~------~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L  232 (281)
                      +++|++|++++  +.+... |.      .+++|++|++++ +.++.+|....  ++|++|++++| +++.+|....+++|
T Consensus       223 l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L  296 (310)
T 4glp_A          223 GVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEV  296 (310)
T ss_dssp             TCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCC
T ss_pred             CCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCc
Confidence            67777777776  334333 32      135777777777 46666663322  57777777773 55555553445677


Q ss_pred             cEEecCCCc
Q 023528          233 LRLGIDDCP  241 (281)
Q Consensus       233 ~~L~l~~c~  241 (281)
                      ++|++++++
T Consensus       297 ~~L~L~~N~  305 (310)
T 4glp_A          297 DNLTLDGNP  305 (310)
T ss_dssp             SCEECSSTT
T ss_pred             cEEECcCCC
Confidence            777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=7.8e-13  Score=108.63  Aligned_cols=166  Identities=25%  Similarity=0.263  Sum_probs=92.7

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC-CCCCCCCCccEEEeccCcccccc
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP-EGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      ..+++++++.. +..+|.  .++.++++|+++++.                +..++ ..+..+++|++|++++|. +..+
T Consensus        15 ~~~~l~~~~~~-l~~~p~--~~~~~l~~L~L~~n~----------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~   74 (251)
T 3m19_A           15 GKKEVDCQGKS-LDSVPS--GIPADTEKLDLQSTG----------------LATLSDATFRGLTKLTWLNLDYNQ-LQTL   74 (251)
T ss_dssp             GGTEEECTTCC-CSSCCS--CCCTTCCEEECTTSC----------------CCCCCTTTTTTCTTCCEEECTTSC-CCCC
T ss_pred             CCeEEecCCCC-ccccCC--CCCCCCCEEEccCCC----------------cCccCHhHhcCcccCCEEECCCCc-CCcc
Confidence            45666666544 556664  122337777776643                11221 223445677777777753 3333


Q ss_pred             -cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          106 -PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       106 -p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                       +..+..+++|++|+++++ .+..++..  ..+++|++|++++| .++.++...+..+++|++|++++  +.+..++.  
T Consensus        75 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~  150 (251)
T 3m19_A           75 SAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT--NQLQSIPAGA  150 (251)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTT
T ss_pred             CHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC--CcCCccCHHH
Confidence             344667777777777763 44444432  45667777777663 44455544456666677777666  34444443  


Q ss_pred             --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                        ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus       151 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          151 FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence              234566666666 4555555333 55666666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.52  E-value=2.4e-15  Score=128.73  Aligned_cols=199  Identities=15%  Similarity=0.083  Sum_probs=102.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      +.++.|+++++..-...+.+..+++ |++|++++|.....              .++.....+++|++|++++|......
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~-L~~L~L~~~~l~~~--------------~~~~~~~~~~~L~~L~L~~~~l~~~~  134 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS--------------TLHGILSQCSKLQNLSLEGLRLSDPI  134 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBC-CCEEECTTCEECHH--------------HHHHHHTTBCCCSEEECTTCBCCHHH
T ss_pred             ccceEEEcCCccccccchhhccCCC-CCEEEccCCCcCHH--------------HHHHHHhhCCCCCEEeCcCcccCHHH
Confidence            4666666666552223334555666 77777776641111              01111223456677777666433344


Q ss_pred             cccCcCCCCccEEeecCCcCCcc--cCC-CCCCCCcCeEEecCCCCcccc-chhhhccCC-CcceEEeecCCC-CCc--c
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVS--FPE-DGFPTNLQSLVVDDLKISKPL-FEWGLDRFA-CLRELRIRGGCP-DLV--S  177 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~-~L~~L~l~~~~~-~~~--~  177 (281)
                      +..+..+++|++|++++|..++.  ++. ...+++|++|++++|..++.. ....+..++ +|++|++++ |. .++  .
T Consensus       135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~  213 (336)
T 2ast_B          135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSD  213 (336)
T ss_dssp             HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-CGGGSCHHH
T ss_pred             HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC-CcccCCHHH
Confidence            45555666777777766544432  222 134566777777666344321 122455666 677777766 42 222  1


Q ss_pred             CCC---CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCccccc--CCCCCCCCcEEecCCC
Q 023528          178 SPR---FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYFS--KQGLPKSLLRLGIDDC  240 (281)
Q Consensus       178 ~~~---~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i~--~~~~~~~L~~L~l~~c  240 (281)
                      ++.   ..++|+.|++++|..++ ..+.....+++|++|++++|..+....  ..+.+++|++|++.+|
T Consensus       214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            221   34467777777654343 223233566677777777665332211  1112566777777666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=5e-13  Score=122.01  Aligned_cols=176  Identities=24%  Similarity=0.238  Sum_probs=103.1

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP   82 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~   82 (281)
                      +++.|+++++ .++.+ |... +++|++|++++|. +..+|  +.+++ |++|+++++.                +..+|
T Consensus        60 ~L~~L~Ls~n-~L~~l-p~~l-~~~L~~L~Ls~N~-l~~ip--~~l~~-L~~L~Ls~N~----------------l~~ip  116 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSL-PDNL-PPQITVLEITQNA-LISLP--ELPAS-LEYLDACDNR----------------LSTLP  116 (571)
T ss_dssp             TCSEEECCSS-CCSCC-CSCC-CTTCSEEECCSSC-CSCCC--CCCTT-CCEEECCSSC----------------CSCCC
T ss_pred             CccEEEeCCC-CCCcc-CHhH-cCCCCEEECcCCC-Ccccc--cccCC-CCEEEccCCC----------------CCCcc
Confidence            4566666654 35556 3332 2467777777665 55555  34555 7776666643                22233


Q ss_pred             CCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528           83 EGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFAC  162 (281)
Q Consensus        83 ~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  162 (281)
                      . +..  +|++|++++| .++.+|.   .+++|++|+++++ .++.+|.  .+++|+.|++++| .++.++.  +.  ++
T Consensus       117 ~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N-~L~~lp~--l~--~~  181 (571)
T 3cvr_A          117 E-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNN-QLTFLPE--LP--ES  181 (571)
T ss_dssp             C-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC--CC--TT
T ss_pred             h-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCC-CCCCcch--hh--CC
Confidence            3 222  6777777774 4455654   5677777777763 4555554  5667777777774 3444553  33  67


Q ss_pred             cceEEeecCCCCCccCCCCCCCc-------cEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528          163 LRELRIRGGCPDLVSSPRFPASL-------TQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK  219 (281)
Q Consensus       163 L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  219 (281)
                      |+.|++++  +.++.+|..+.+|       +.|++++ +.++.+|..+..+++|++|++++|.-
T Consensus       182 L~~L~Ls~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          182 LEALDVST--NLLESLPAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCEEECCS--SCCSSCCCCC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCEEECcC--CCCCchhhHHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence            77777776  4555655533356       7777777 56777775455577777777777543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.51  E-value=1.9e-13  Score=114.82  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=124.3

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      ++|+.|++++|. +..++.+..+++ |++|+++++.                +..++. ...+++|++|++++| .+..+
T Consensus        46 ~~L~~L~l~~~~-i~~~~~~~~l~~-L~~L~L~~n~----------------l~~~~~-l~~l~~L~~L~l~~n-~l~~~  105 (291)
T 1h6t_A           46 NSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNK----------------LTDIKP-LANLKNLGWLFLDEN-KVKDL  105 (291)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC----------------CCCCGG-GTTCTTCCEEECCSS-CCCCG
T ss_pred             CcccEEEccCCC-cccChhHhcCCC-CCEEEccCCc----------------cCCCcc-cccCCCCCEEECCCC-cCCCC
Confidence            588999998876 777777888888 9999998864                222222 445678999999986 45555


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      | .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++  .+..+++|++|++++  +.+..++.  ..+
T Consensus       106 ~-~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~--N~l~~~~~l~~l~  178 (291)
T 1h6t_A          106 S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLED--NQISDIVPLAGLT  178 (291)
T ss_dssp             G-GGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCS--SCCCCCGGGTTCT
T ss_pred             h-hhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccC--CccccchhhcCCC
Confidence            4 5888899999999885 5555655567889999999885 444443  578889999999998  45555543  566


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccc
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYF  223 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i  223 (281)
                      +|+.|++++ +.++.++ ....+++|+.|+++++ .+...
T Consensus       179 ~L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n-~i~~~  215 (291)
T 1h6t_A          179 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNK  215 (291)
T ss_dssp             TCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEE-EEECC
T ss_pred             ccCEEECCC-CcCCCCh-hhccCCCCCEEECcCC-cccCC
Confidence            899999998 5788877 4678889999999985 34433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=1.9e-12  Score=106.34  Aligned_cols=161  Identities=23%  Similarity=0.263  Sum_probs=91.1

Q ss_pred             eecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC-
Q 023528            6 SRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP-   82 (281)
Q Consensus         6 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~-   82 (281)
                      .++.++ ..++.+ |.+ ++++++.|+++++. +..++.  ++.+++ |++|+++++.                +..++ 
T Consensus        18 ~l~~~~-~~l~~~-p~~-~~~~l~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~L~~n~----------------l~~~~~   76 (251)
T 3m19_A           18 EVDCQG-KSLDSV-PSG-IPADTEKLDLQSTG-LATLSDATFRGLTK-LTWLNLDYNQ----------------LQTLSA   76 (251)
T ss_dssp             EEECTT-CCCSSC-CSC-CCTTCCEEECTTSC-CCCCCTTTTTTCTT-CCEEECTTSC----------------CCCCCT
T ss_pred             EEecCC-CCcccc-CCC-CCCCCCEEEccCCC-cCccCHhHhcCccc-CCEEECCCCc----------------CCccCH
Confidence            344443 345566 432 34577777777665 444432  566666 7777776643                11222 


Q ss_pred             CCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528           83 EGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR  159 (281)
Q Consensus        83 ~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~  159 (281)
                      ..+..+++|++|++++|. ++.+| ..+..+++|++|+++++ .++.++..  ..+++|+.|++++| .++.++...+..
T Consensus        77 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  153 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK  153 (251)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             hHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCc
Confidence            223345677777777743 33443 34566777777777763 45555543  34667777777764 444555445666


Q ss_pred             CCCcceEEeecCCCCCccCCC----CCCCccEEeccC
Q 023528          160 FACLRELRIRGGCPDLVSSPR----FPASLTQLGISD  192 (281)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~  192 (281)
                      +++|++|++++  +.+..++.    ..++|+.|++++
T Consensus       154 l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          154 LTNLQTLSLST--NQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CcCCCEEECCC--CcCCccCHHHHhCCCCCCEEEeeC
Confidence            67777777776  34444443    345677777776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.50  E-value=7.3e-14  Score=117.43  Aligned_cols=185  Identities=17%  Similarity=0.118  Sum_probs=139.0

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP  106 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp  106 (281)
                      .+..+.+.... +..+.....+++ |++|++++|. +               ..++ .+..+++|++|++++| .+..++
T Consensus        25 ~~~~~~l~~~~-~~~~~~~~~l~~-L~~L~l~~~~-i---------------~~~~-~~~~l~~L~~L~L~~n-~l~~~~   84 (291)
T 1h6t_A           25 ETIKDNLKKKS-VTDAVTQNELNS-IDQIIANNSD-I---------------KSVQ-GIQYLPNVTKLFLNGN-KLTDIK   84 (291)
T ss_dssp             HHHHHHTTCSC-TTSEECHHHHHT-CCEEECTTSC-C---------------CCCT-TGGGCTTCCEEECCSS-CCCCCG
T ss_pred             HHHHHHhcCCC-cccccchhhcCc-ccEEEccCCC-c---------------ccCh-hHhcCCCCCEEEccCC-ccCCCc
Confidence            34444554433 344444566888 9999998864 2               2222 1344679999999996 455665


Q ss_pred             ccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCC
Q 023528          107 NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPAS  184 (281)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~  184 (281)
                      . +..+++|++|+++++ .+..++....+++|+.|++++| .++.++  .+..+++|+.|++++  +.+..++.  ..++
T Consensus        85 ~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~i~~~~--~l~~l~~L~~L~l~~--n~l~~~~~l~~l~~  157 (291)
T 1h6t_A           85 P-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGN--NKITDITVLSRLTK  157 (291)
T ss_dssp             G-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCS--SCCCCCGGGGGCTT
T ss_pred             c-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC-cCCCCh--hhcCCCCCCEEEccC--CcCCcchhhccCCC
Confidence            4 889999999999985 5666776678899999999996 455554  588999999999998  45555544  5679


Q ss_pred             ccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      |+.|++++ +.++.++. +..+++|++|++++| .++.++....+++|+.|++.+++
T Consensus       158 L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          158 LDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             CCEEEccC-Cccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence            99999999 57887774 788999999999995 67788765557899999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=2.4e-13  Score=122.34  Aligned_cols=188  Identities=13%  Similarity=0.018  Sum_probs=120.6

Q ss_pred             CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCcc
Q 023528            1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES   80 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~   80 (281)
                      +++|+.|+++++. ++..++...+ ++|++|++++|. +..++.   .++ |++|++++|. +..++             
T Consensus        57 l~~L~~L~Ls~N~-l~~~~~l~~l-~~L~~L~Ls~N~-l~~l~~---~~~-L~~L~L~~N~-l~~~~-------------  115 (487)
T 3oja_A           57 FTKLELLNLSSNV-LYETLDLESL-STLRTLDLNNNY-VQELLV---GPS-IETLHAANNN-ISRVS-------------  115 (487)
T ss_dssp             CTTCCEEECTTSC-CEEEEECTTC-TTCCEEECCSSE-EEEEEE---CTT-CCEEECCSSC-CCCEE-------------
T ss_pred             CCCCCEEEeeCCC-CCCCcccccC-CCCCEEEecCCc-CCCCCC---CCC-cCEEECcCCc-CCCCC-------------
Confidence            4678999999865 6655353444 599999999986 666665   477 9999999875 22221             


Q ss_pred             CCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhc
Q 023528           81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLD  158 (281)
Q Consensus        81 l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~  158 (281)
                        ..  .+++|++|++++|..-...|..+..+++|++|+++++......+..  ..+++|+.|++++|. ++.++  ...
T Consensus       116 --~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--~~~  188 (487)
T 3oja_A          116 --CS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQV  188 (487)
T ss_dssp             --EC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CCC
T ss_pred             --cc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc--ccc
Confidence              11  1347777777775443434556667777777777774333223322  246777777777744 33333  244


Q ss_pred             cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528          159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK  219 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  219 (281)
                      .+++|+.|++++  +.+..++.   ..++|+.|++++ +.+..+|..+..+++|+.|++++|..
T Consensus       189 ~l~~L~~L~Ls~--N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          189 VFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             cCCCCCEEECCC--CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence            577777777776  44555543   345777777777 56767774446777788888877543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=2.9e-13  Score=114.67  Aligned_cols=143  Identities=20%  Similarity=0.219  Sum_probs=101.8

Q ss_pred             eeecCCCCCccCCCCCCCCCCccEEEeccCccccc--cc--ccCcCCCCccEEeecCCcCCcccCCC-----CCCCCcCe
Q 023528           70 IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA--LP--NCIHNLTSLLHLEIRECRSLVSFPED-----GFPTNLQS  140 (281)
Q Consensus        70 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~--lp--~~~~~l~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~  140 (281)
                      ++++++.-....+..+..+++|++|++++|...+.  ++  ..+..+++|++|+++++ .++.++..     ..+++|++
T Consensus       150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~  228 (310)
T 4glp_A          150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHS  228 (310)
T ss_dssp             EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSS
T ss_pred             EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCE
Confidence            44444433223334556788999999999864432  32  23468899999999986 45544431     35689999


Q ss_pred             EEecCCCCccccchhhhccC---CCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          141 LVVDDLKISKPLFEWGLDRF---ACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       141 L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      |++++|......|. .+..+   ++|++|++++  +.++.+|. .+++|+.|++++ +.++.+| ....+++|++|++++
T Consensus       229 L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~--N~l~~lp~~~~~~L~~L~Ls~-N~l~~~~-~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          229 LDLSHNSLRATVNP-SAPRCMWSSALNSLNLSF--AGLEQVPKGLPAKLRVLDLSS-NRLNRAP-QPDELPEVDNLTLDG  303 (310)
T ss_dssp             EECTTSCCCCCCCS-CCSSCCCCTTCCCEECCS--SCCCSCCSCCCSCCSCEECCS-CCCCSCC-CTTSCCCCSCEECSS
T ss_pred             EECCCCCCCccchh-hHHhccCcCcCCEEECCC--CCCCchhhhhcCCCCEEECCC-CcCCCCc-hhhhCCCccEEECcC
Confidence            99999654443332 34444   7999999998  56778877 668999999999 6788876 357889999999999


Q ss_pred             CC
Q 023528          217 CP  218 (281)
Q Consensus       217 c~  218 (281)
                      +.
T Consensus       304 N~  305 (310)
T 4glp_A          304 NP  305 (310)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.48  E-value=1.8e-12  Score=119.73  Aligned_cols=206  Identities=18%  Similarity=0.134  Sum_probs=140.7

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhc--cccc---------eeecCCCCCccCCCCCCCCCCccEEE
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLES--LAER---------IWIFGCPNLESFPEGGLPSTKLTRLT   95 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~--~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~   95 (281)
                      .|+.+++.++. ....+....+++ |+.++++++.....  .+..         +++..+. ...++.....+++|+.++
T Consensus       350 ~L~~l~l~~n~-~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~  426 (635)
T 4g8a_A          350 SLKRLTFTSNK-GGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLD  426 (635)
T ss_dssp             TCCEEEEESCC-SCCBCCCCBCTT-CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEE
T ss_pred             hhhhccccccc-CCCCcccccccc-cccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchh
Confidence            55555555444 222333455777 88888877643211  1110         3333332 233455566678999999


Q ss_pred             eccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCC
Q 023528           96 IWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGC  172 (281)
Q Consensus        96 l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (281)
                      +.++......+ ..+..++.++.++++++ .+...+..  ..+++++.+++++|..........+..+++|++|++++ |
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N  504 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-C  504 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-S
T ss_pred             hhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-C
Confidence            98876555443 45678899999999875 44443332  56789999999998766655555788999999999998 4


Q ss_pred             CCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCCC
Q 023528          173 PDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDDC  240 (281)
Q Consensus       173 ~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~c  240 (281)
                       .+..++.    ..++|+.|++++ +.++.++... +.+++|++|+++++ ++..++...   ++++|++|+++++
T Consensus       505 -~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          505 -QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             -ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence             5655543    467999999999 6788887555 88999999999995 676665533   3478999999763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.48  E-value=5.8e-15  Score=126.36  Aligned_cols=215  Identities=15%  Similarity=0.152  Sum_probs=142.2

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccc--ccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAF--LSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL   78 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l   78 (281)
                      .+++.+++.+.. +...++...-.++|++|++++|. +..  ++. +..+++ |++|++++|......+           
T Consensus        70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~-L~~L~L~~~~l~~~~~-----------  135 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSK-LQNLSLEGLRLSDPIV-----------  135 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCC-CSEEECTTCBCCHHHH-----------
T ss_pred             ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCC-CCEEeCcCcccCHHHH-----------
Confidence            345666666643 44332333333799999999987 442  443 678899 9999999985222221           


Q ss_pred             ccCCCCCCCCCCccEEEeccCcccc--cccccCcCCCCccEEeecCCcCCcc--cCCC-CCCC-CcCeEEecCCC-Ccc-
Q 023528           79 ESFPEGGLPSTKLTRLTIWKCKNLK--ALPNCIHNLTSLLHLEIRECRSLVS--FPED-GFPT-NLQSLVVDDLK-ISK-  150 (281)
Q Consensus        79 ~~l~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~--l~~~-~~~~-~L~~L~l~~~~-~~~-  150 (281)
                          ..+..+++|++|++++|..++  .++..+..+++|++|++++|..++.  ++.. ..++ +|++|++++|. .++ 
T Consensus       136 ----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~  211 (336)
T 2ast_B          136 ----NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK  211 (336)
T ss_dssp             ----HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred             ----HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence                112235699999999986665  3566677899999999999745543  2322 4567 99999999985 342 


Q ss_pred             -ccchhhhccCCCcceEEeecCCCCCcc-CCC---CCCCccEEeccCCCCCccccc-cCCCCCCcCEEeccCCCCccccc
Q 023528          151 -PLFEWGLDRFACLRELRIRGGCPDLVS-SPR---FPASLTQLGISDMPTLKCLSS-VGENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       151 -~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~i~  224 (281)
                       .++ ..+.++++|++|++++ |..+++ .+.   ..++|++|++++|..+..... ..+.+++|++|++++|     ++
T Consensus       212 ~~l~-~~~~~~~~L~~L~l~~-~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~  284 (336)
T 2ast_B          212 SDLS-TLVRRCPNLVHLDLSD-SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VP  284 (336)
T ss_dssp             HHHH-HHHHHCTTCSEEECTT-CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SC
T ss_pred             HHHH-HHHhhCCCCCEEeCCC-CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cC
Confidence             233 3567899999999998 764432 222   457899999999864433211 2367899999999998     33


Q ss_pred             CCCC---CCCCcEEecCCCc
Q 023528          225 KQGL---PKSLLRLGIDDCP  241 (281)
Q Consensus       225 ~~~~---~~~L~~L~l~~c~  241 (281)
                      ..++   ...++.|++.++.
T Consensus       285 ~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          285 DGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             TTCHHHHHHHSTTSEESCCC
T ss_pred             HHHHHHHHhhCcceEEeccc
Confidence            3222   2346677776444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=1.9e-13  Score=125.88  Aligned_cols=169  Identities=16%  Similarity=0.162  Sum_probs=128.6

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      +.|+.|++++|. +..++.+..+++ |+.|+|++|. +..               ++. +..+++|+.|++++| .+..+
T Consensus        43 ~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~Ls~N~-l~~---------------~~~-l~~l~~L~~L~Ls~N-~l~~l  102 (605)
T 1m9s_A           43 NSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNK-LTD---------------IKP-LTNLKNLGWLFLDEN-KIKDL  102 (605)
T ss_dssp             TTCCCCBCTTCC-CCCCTTGGGCTT-CCEEECTTSC-CCC---------------CGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred             CCCCEEECcCCC-CCCChHHccCCC-CCEEEeeCCC-CCC---------------Chh-hccCCCCCEEECcCC-CCCCC
Confidence            589999999876 777788888999 9999998864 222               222 345679999999996 45555


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      | .+..+++|++|+++++ .+..++....+++|+.|++++|. +..++  .+..+++|+.|++++ | .+..++.  .++
T Consensus       103 ~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~-N-~l~~~~~l~~l~  175 (605)
T 1m9s_A          103 S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLED-N-QISDIVPLAGLT  175 (605)
T ss_dssp             T-TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCS-S-CCCCCGGGTTCT
T ss_pred             h-hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcC-C-cCCCchhhccCC
Confidence            4 7889999999999985 55566656778999999999854 44443  688899999999998 4 4554433  567


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCccccc
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~  224 (281)
                      +|+.|++++ +.+..++ .+..+++|+.|++++|. +...|
T Consensus       176 ~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          176 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             TCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCC
T ss_pred             CCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCc
Confidence            899999999 4777776 56888999999999863 44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=6.2e-13  Score=105.21  Aligned_cols=148  Identities=16%  Similarity=0.052  Sum_probs=99.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      ++|++|+++++. +..++.+..+++ |++|++++|. +..+               + .+..+++|++|++++|..-...
T Consensus        44 ~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~l~~n~-~~~~---------------~-~l~~l~~L~~L~l~~n~l~~~~  104 (197)
T 4ezg_A           44 NSLTYITLANIN-VTDLTGIEYAHN-IKDLTINNIH-ATNY---------------N-PISGLSNLERLRIMGKDVTSDK  104 (197)
T ss_dssp             HTCCEEEEESSC-CSCCTTGGGCTT-CSEEEEESCC-CSCC---------------G-GGTTCTTCCEEEEECTTCBGGG
T ss_pred             CCccEEeccCCC-ccChHHHhcCCC-CCEEEccCCC-CCcc---------------h-hhhcCCCCCEEEeECCccCccc
Confidence            588888888775 667777777888 8888888763 2221               1 2233568888888886544445


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FP  182 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~  182 (281)
                      +..+..+++|++|+++++......+. ...+++|+.|++++|..++.++  .+..+++|++|++++  +.+.+++.  ..
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~--n~i~~~~~l~~l  180 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF--DGVHDYRGIEDF  180 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT--BCCCCCTTGGGC
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC--CCCcChHHhccC
Confidence            66777888888888887533322222 2567788888888876566665  577888888888887  34555544  45


Q ss_pred             CCccEEeccCCCCCc
Q 023528          183 ASLTQLGISDMPTLK  197 (281)
Q Consensus       183 ~~L~~L~l~~c~~l~  197 (281)
                      ++|+.|++++ +.++
T Consensus       181 ~~L~~L~l~~-N~i~  194 (197)
T 4ezg_A          181 PKLNQLYAFS-QTIG  194 (197)
T ss_dssp             SSCCEEEECB-C---
T ss_pred             CCCCEEEeeC-cccC
Confidence            6788888887 4444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.44  E-value=5.2e-12  Score=115.28  Aligned_cols=178  Identities=23%  Similarity=0.287  Sum_probs=134.1

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      .+|+.|+++++. +..+|.- -+++ |++|+++++.                +..+|   ..+++|++|++++| .++.+
T Consensus        59 ~~L~~L~Ls~n~-L~~lp~~-l~~~-L~~L~Ls~N~----------------l~~ip---~~l~~L~~L~Ls~N-~l~~i  115 (571)
T 3cvr_A           59 NQFSELQLNRLN-LSSLPDN-LPPQ-ITVLEITQNA----------------LISLP---ELPASLEYLDACDN-RLSTL  115 (571)
T ss_dssp             TTCSEEECCSSC-CSCCCSC-CCTT-CSEEECCSSC----------------CSCCC---CCCTTCCEEECCSS-CCSCC
T ss_pred             CCccEEEeCCCC-CCccCHh-HcCC-CCEEECcCCC----------------Ccccc---cccCCCCEEEccCC-CCCCc
Confidence            378889998876 6667651 1356 8888888754                33445   22579999999996 56668


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCc
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASL  185 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L  185 (281)
                      |. +..  +|++|+++++ .++.+|.  .+++|+.|++++| .++.++.    .+++|++|++++  +.++.+|...++|
T Consensus       116 p~-l~~--~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~--N~L~~lp~l~~~L  182 (571)
T 3cvr_A          116 PE-LPA--SLKHLDVDNN-QLTMLPE--LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRN--NQLTFLPELPESL  182 (571)
T ss_dssp             CC-CCT--TCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS--SCCSCCCCCCTTC
T ss_pred             ch-hhc--CCCEEECCCC-cCCCCCC--cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCC--CCCCCcchhhCCC
Confidence            87 554  9999999985 5666776  7899999999985 4555663    578999999998  5666677655799


Q ss_pred             cEEeccCCCCCccccccCCCCCCc-------CEEeccCCCCcccccCC-CCCCCCcEEecCCCchHH
Q 023528          186 TQLGISDMPTLKCLSSVGENLTSL-------ETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLME  244 (281)
Q Consensus       186 ~~L~l~~c~~l~~l~~~~~~l~~L-------~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~  244 (281)
                      +.|++++ +.++.+|. +..  +|       ++|++++| .++.+|.. ..+++|++|++++++.-.
T Consensus       183 ~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          183 EALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CEEECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             CEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            9999999 68889985 522  67       99999994 78888872 237899999999997543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=9.6e-13  Score=121.18  Aligned_cols=169  Identities=14%  Similarity=0.102  Sum_probs=99.1

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF   81 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l   81 (281)
                      ++|+.|.++++. +..+ +.....++|+.|++++|. +..++.+..+++ |+.|+|++|. +               ..+
T Consensus        43 ~~L~~L~l~~n~-i~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~-L~~L~Ls~N~-l---------------~~l  102 (605)
T 1m9s_A           43 NSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNK-LTDIKPLTNLKN-LGWLFLDENK-I---------------KDL  102 (605)
T ss_dssp             TTCCCCBCTTCC-CCCC-TTGGGCTTCCEEECTTSC-CCCCGGGGGCTT-CCEEECCSSC-C---------------CCC
T ss_pred             CCCCEEECcCCC-CCCC-hHHccCCCCCEEEeeCCC-CCCChhhccCCC-CCEEECcCCC-C---------------CCC
Confidence            456666666543 5555 322333577777777765 555555666777 7777777653 1               112


Q ss_pred             CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCC
Q 023528           82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA  161 (281)
Q Consensus        82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~  161 (281)
                      + .+..+++|+.|++++|. +..+ ..+..+++|+.|+++++ .+..++....+++|+.|++++|. +..++.  +..++
T Consensus       103 ~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~  175 (605)
T 1m9s_A          103 S-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLT  175 (605)
T ss_dssp             T-TSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG--GTTCT
T ss_pred             h-hhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh--hccCC
Confidence            2 23345677777777753 4444 35666777777777764 44444444566777777777643 333332  66677


Q ss_pred             CcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528          162 CLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS  200 (281)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~  200 (281)
                      +|+.|++++  +.+..++.  ..++|+.|++++| .+...|
T Consensus       176 ~L~~L~Ls~--N~i~~l~~l~~l~~L~~L~L~~N-~l~~~p  213 (605)
T 1m9s_A          176 KLQNLYLSK--NHISDLRALAGLKNLDVLELFSQ-ECLNKP  213 (605)
T ss_dssp             TCCEEECCS--SCCCBCGGGTTCTTCSEEECCSE-EEECCC
T ss_pred             CCCEEECcC--CCCCCChHHccCCCCCEEEccCC-cCcCCc
Confidence            777777776  34444443  4557777777773 444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.43  E-value=6.5e-13  Score=105.09  Aligned_cols=147  Identities=14%  Similarity=0.096  Sum_probs=80.5

Q ss_pred             CCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcC
Q 023528           46 GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRS  125 (281)
Q Consensus        46 ~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~  125 (281)
                      +.+++ |++|+++++.                +..++ ....+++|++|++++| .+..+ ..+..+++|++|+++++..
T Consensus        41 ~~l~~-L~~L~l~~n~----------------i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           41 AQMNS-LTYITLANIN----------------VTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHHHT-CCEEEEESSC----------------CSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTC
T ss_pred             hhcCC-ccEEeccCCC----------------ccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCcc
Confidence            45666 7777776643                22333 2344567777777776 44444 3666777777777777433


Q ss_pred             CcccC-CCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccccc
Q 023528          126 LVSFP-EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSV  202 (281)
Q Consensus       126 l~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~  202 (281)
                      ....+ ....+++|+.|++++|......+ ..+..+++|++|++++ |..+++++.  ..++|+.|++++ +.++.++ .
T Consensus       101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~-n~~i~~~~~l~~l~~L~~L~l~~-n~i~~~~-~  176 (197)
T 4ezg_A          101 TSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSY-NGAITDIMPLKTLPELKSLNIQF-DGVHDYR-G  176 (197)
T ss_dssp             BGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCS-CTBCCCCGGGGGCSSCCEEECTT-BCCCCCT-T
T ss_pred             CcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccC-CCCccccHhhcCCCCCCEEECCC-CCCcChH-H
Confidence            22222 23556777777777744333232 2466667777777766 433444433  234555555555 2344443 3


Q ss_pred             CCCCCCcCEEeccC
Q 023528          203 GENLTSLETLDLSN  216 (281)
Q Consensus       203 ~~~l~~L~~L~l~~  216 (281)
                      ...+++|++|++++
T Consensus       177 l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          177 IEDFPKLNQLYAFS  190 (197)
T ss_dssp             GGGCSSCCEEEECB
T ss_pred             hccCCCCCEEEeeC
Confidence            34445555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.41  E-value=3.2e-13  Score=111.82  Aligned_cols=161  Identities=19%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP  106 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp  106 (281)
                      ++..++++++. +..++.+..+++ |++|+++++. +               ..++ ....+++|++|++++| .+..++
T Consensus        20 ~l~~l~l~~~~-i~~~~~~~~l~~-L~~L~l~~n~-i---------------~~l~-~l~~l~~L~~L~L~~N-~i~~~~   79 (263)
T 1xeu_A           20 NAVKQNLGKQS-VTDLVSQKELSG-VQNFNGDNSN-I---------------QSLA-GMQFFTNLKELHLSHN-QISDLS   79 (263)
T ss_dssp             HHHHHHHTCSC-TTSEECHHHHTT-CSEEECTTSC-C---------------CCCT-TGGGCTTCCEEECCSS-CCCCCG
T ss_pred             HHHHHHhcCCC-cccccchhhcCc-CcEEECcCCC-c---------------ccch-HHhhCCCCCEEECCCC-ccCCCh
Confidence            56666666654 555555666777 7777777653 1               2222 2334567788888775 455555


Q ss_pred             ccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCC
Q 023528          107 NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPAS  184 (281)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~  184 (281)
                      . +..+++|++|+++++ .++.++.... ++|+.|++++| .++.++  .+..+++|++|++++  +.++.++.  ..++
T Consensus        80 ~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~Ls~--N~i~~~~~l~~l~~  151 (263)
T 1xeu_A           80 P-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNN-ELRDTD--SLIHLKNLEILSIRN--NKLKSIVMLGFLSK  151 (263)
T ss_dssp             G-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSS-CCSBSG--GGTTCTTCCEEECTT--SCCCBCGGGGGCTT
T ss_pred             h-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEccCC-ccCCCh--hhcCcccccEEECCC--CcCCCChHHccCCC
Confidence            4 777778888888774 5555554444 77888888774 444444  467777888888877  44555544  4567


Q ss_pred             ccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528          185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  217 (281)
                      |+.|++++ +.++.++ ....+++|++|+++++
T Consensus       152 L~~L~L~~-N~i~~~~-~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          152 LEVLDLHG-NEITNTG-GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCEEECTT-SCCCBCT-TSTTCCCCCEEEEEEE
T ss_pred             CCEEECCC-CcCcchH-HhccCCCCCEEeCCCC
Confidence            88888887 4666663 4477788888888874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.39  E-value=1.2e-11  Score=98.56  Aligned_cols=166  Identities=24%  Similarity=0.261  Sum_probs=110.4

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCC-CCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEG-GLPST   89 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~-~~~~~   89 (281)
                      ..++.+ |.. ++++|++|+++++. +..++.  ++.+++ |++|+++++.                +..++.. +..++
T Consensus        17 ~~l~~~-p~~-~~~~l~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~----------------l~~~~~~~~~~l~   76 (208)
T 2o6s_A           17 QGRTSV-PTG-IPAQTTYLDLETNS-LKSLPNGVFDELTS-LTQLYLGGNK----------------LQSLPNGVFNKLT   76 (208)
T ss_dssp             SCCSSC-CSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTT-CSEEECCSSC----------------CCCCCTTTTTTCT
T ss_pred             CCccCC-CCC-CCCCCcEEEcCCCc-cCcCChhhhccccc-CcEEECCCCc----------------cCccChhhcCCCC
Confidence            346667 433 44589999999876 666654  677888 9999888753                2233332 34567


Q ss_pred             CccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           90 KLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      +|++|++++| .++.+|. .+..+++|++|+++++ .+..++..  ..+++|+.|++++| .++.++...+..+++|++|
T Consensus        77 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           77 SLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             CcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence            8999999885 4555553 4678889999999874 55566553  56788888888884 4555555557778888888


Q ss_pred             EeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCC
Q 023528          167 RIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENL  206 (281)
Q Consensus       167 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l  206 (281)
                      ++++ +.-...    +++++.|+++.+..-+.+|..++.+
T Consensus       154 ~l~~-N~~~~~----~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          154 WLHD-NPWDCT----CPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ECCS-CCBCCC----TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             EecC-CCeecC----CCCHHHHHHHHHhCCceeeccCccc
Confidence            8887 433222    3367777777744445677433433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.36  E-value=3.4e-11  Score=97.46  Aligned_cols=134  Identities=25%  Similarity=0.221  Sum_probs=80.8

Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccch
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFE  154 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~  154 (281)
                      .+..+|....  ++|++|++++|......|..+..+++|++|+++++ .+..++..  ..+++|+.|++++| .++.++.
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence            4556665443  57888888885443333566777788888888774 45555543  45677777777774 4555554


Q ss_pred             hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          155 WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      ..+..+++|++|++++  +.+..+|.   ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus       106 ~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCC--NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TTTTTCTTCCEEECCS--SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             hHhCcchhhCeEeccC--CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence            4566677777777776  44445544   344566666665 4555555332 55556666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.31  E-value=5.7e-11  Score=96.12  Aligned_cols=100  Identities=25%  Similarity=0.265  Sum_probs=45.5

Q ss_pred             CCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528           87 PSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL  163 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (281)
                      .+++|++|++++| .++.+|. .+..+++|++|+++++ .++.++..  ..+++|+.|++++| .++.++. .+..+++|
T Consensus        62 ~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L  137 (229)
T 3e6j_A           62 SLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPR-GIERLTHL  137 (229)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCT-TGGGCTTC
T ss_pred             CccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCc-ccccCCCC
Confidence            3445555555553 2333432 2345555555555542 33344332  33455555555552 2333432 34455555


Q ss_pred             ceEEeecCCCCCccCCC----CCCCccEEeccC
Q 023528          164 RELRIRGGCPDLVSSPR----FPASLTQLGISD  192 (281)
Q Consensus       164 ~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~  192 (281)
                      ++|++++  +.+..++.    ..++|+.|++.+
T Consensus       138 ~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          138 THLALDQ--NQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             SEEECCS--SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCC--CcCCccCHHHHhCCCCCCEEEeeC
Confidence            5555554  33444332    234455555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=7.3e-12  Score=103.62  Aligned_cols=166  Identities=15%  Similarity=0.124  Sum_probs=113.5

Q ss_pred             ceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC
Q 023528            4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE   83 (281)
Q Consensus         4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~   83 (281)
                      +..+++.+ ..++.+ +...-.++|++|++++|. +..++.+..+++ |++|+++++. +.               .++.
T Consensus        21 l~~l~l~~-~~i~~~-~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~L~~N~-i~---------------~~~~   80 (263)
T 1xeu_A           21 AVKQNLGK-QSVTDL-VSQKELSGVQNFNGDNSN-IQSLAGMQFFTN-LKELHLSHNQ-IS---------------DLSP   80 (263)
T ss_dssp             HHHHHHTC-SCTTSE-ECHHHHTTCSEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CC---------------CCGG
T ss_pred             HHHHHhcC-CCcccc-cchhhcCcCcEEECcCCC-cccchHHhhCCC-CCEEECCCCc-cC---------------CChh
Confidence            44455554 335555 211222699999999885 777887888888 9999998864 22               2222


Q ss_pred             CCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528           84 GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACL  163 (281)
Q Consensus        84 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (281)
                       +..+++|++|++++| .++.+|. +.. ++|++|+++++ .++.++....+++|+.|++++| .++.++  .+..+++|
T Consensus        81 -l~~l~~L~~L~L~~N-~l~~l~~-~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L  152 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRN-RLKNLNG-IPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV--MLGFLSKL  152 (263)
T ss_dssp             -GTTCSSCCEEECCSS-CCSCCTT-CCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG--GGGGCTTC
T ss_pred             -hccCCCCCEEECCCC-ccCCcCc-ccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh--HHccCCCC
Confidence             345678899999885 4555653 333 88899999885 5666665567888999999885 455554  57788899


Q ss_pred             ceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528          164 RELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS  200 (281)
Q Consensus       164 ~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~  200 (281)
                      ++|++++  +.+..+..  ..++|+.|++++ +.+...|
T Consensus       153 ~~L~L~~--N~i~~~~~l~~l~~L~~L~l~~-N~~~~~~  188 (263)
T 1xeu_A          153 EVLDLHG--NEITNTGGLTRLKKVNWIDLTG-QKCVNEP  188 (263)
T ss_dssp             CEEECTT--SCCCBCTTSTTCCCCCEEEEEE-EEEECCC
T ss_pred             CEEECCC--CcCcchHHhccCCCCCEEeCCC-CcccCCc
Confidence            9999987  45555443  556888999888 4555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=1.1e-10  Score=93.98  Aligned_cols=133  Identities=15%  Similarity=0.181  Sum_probs=82.9

Q ss_pred             CCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccc
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLF  153 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~  153 (281)
                      .++.+|....  ++|+.|+++++ .++.++ ..+..+++|++|+++++ .+..+..  ...+++|+.|++++ +.++.++
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~   96 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELP   96 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS-SCCCCCC
T ss_pred             CcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC-CcCCccC
Confidence            4555665443  47888888884 455554 36677788888888774 4444422  24567777777777 3455666


Q ss_pred             hhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          154 EWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       154 ~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      ...+..+++|++|++++  +.+..++.    ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus        97 ~~~f~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           97 KSLFEGLFSLQLLLLNA--NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             HhHccCCCCCCEEECCC--CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence            55566777777777776  44444432    345677777776 4566665443 56666777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=6.2e-11  Score=102.51  Aligned_cols=123  Identities=20%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             CCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc
Q 023528           88 STKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR  164 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  164 (281)
                      +++|++|++++| .+..++ ..+..+++|++|+++++ .+..++..  ..+++|+.|++++| .+..+....+..+++|+
T Consensus        63 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           63 LTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             ccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCC
Confidence            445555555553 233333 33455555555555552 34444332  33455555555553 23333223445555555


Q ss_pred             eEEeecCCCCCccCCC-------CCCCccEEeccCCCCCccccccC-CCCCC--cCEEeccC
Q 023528          165 ELRIRGGCPDLVSSPR-------FPASLTQLGISDMPTLKCLSSVG-ENLTS--LETLDLSN  216 (281)
Q Consensus       165 ~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~~l~~~~-~~l~~--L~~L~l~~  216 (281)
                      .|++++  +.+..++.       ..++|+.|++++ +.++.+|... ..++.  ++.|++.+
T Consensus       140 ~L~L~~--N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          140 KLYLSQ--NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             EEECCS--SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             EEECCC--CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence            555555  33444332       134555555555 3455444222 33333  24455554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.27  E-value=1.7e-10  Score=106.40  Aligned_cols=187  Identities=19%  Similarity=0.104  Sum_probs=126.1

Q ss_pred             CcCceeeccCCcCcccc---cc-CCCcCCcCcEEEecCCcchhccccc--------eeecCCCCCccCC-CCCCCCCCcc
Q 023528           26 ATLEHLEVTHCSNLAFL---SW-NGNLPRALKYLYVKDCSKLESLAER--------IWIFGCPNLESFP-EGGLPSTKLT   92 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l---~~-~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~~~~~l~~l~-~~~~~~~~L~   92 (281)
                      ++|++|+++.+. +...   +. ...+++ |+++++..+......+..        +++.++......+ .....+++++
T Consensus       371 ~~L~~L~ls~n~-l~~~~~~~~~~~~~~~-L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          371 PSLEFLDLSRNG-LSFKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             TTCCEEECCSSC-CBEEEECCHHHHSCSC-CCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccchhhccc-cccccccccchhhhhh-hhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            589999998876 3221   11 344666 888887775422211110        4444433322222 2344577899


Q ss_pred             EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528           93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus        93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      .++++.+......+..+..+++++.|+++++.....+..  ...+++|+.|++++| .++.++...+.++++|++|++++
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC
Confidence            999998655454556677889999999988655554332  256789999999985 55666555788999999999998


Q ss_pred             CCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCC-CCcCEEeccCCC
Q 023528          171 GCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENL-TSLETLDLSNCP  218 (281)
Q Consensus       171 ~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l-~~L~~L~l~~c~  218 (281)
                        +.+..++.    ..++|+.|++++ +.+..++... ..+ ++|++|++++++
T Consensus       528 --N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          528 --NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             --SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             --CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence              56666654    457899999999 5777765454 666 689999999854

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=1e-12  Score=114.70  Aligned_cols=33  Identities=9%  Similarity=0.043  Sum_probs=23.5

Q ss_pred             CcCceeeccCCcCcccc-----c-cCCCcCCcCcEEEecCC
Q 023528           26 ATLEHLEVTHCSNLAFL-----S-WNGNLPRALKYLYVKDC   60 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l-----~-~~~~l~~~L~~L~l~~~   60 (281)
                      ++|++|++++|. +...     + .+..+++ |++|++++|
T Consensus        32 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-L~~L~Ls~~   70 (386)
T 2ca6_A           32 DSVKEIVLSGNT-IGTEAARWLSENIASKKD-LEIAEFSDI   70 (386)
T ss_dssp             SCCCEEECTTSE-ECHHHHHHHHHTTTTCTT-CCEEECCSC
T ss_pred             CCccEEECCCCC-CCHHHHHHHHHHHHhCCC-ccEEeCccc
Confidence            678888888875 4422     1 2566788 888888886

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.24  E-value=2.7e-10  Score=91.55  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=89.5

Q ss_pred             ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc
Q 023528           29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN  107 (281)
Q Consensus        29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~  107 (281)
                      +.++.++.. ++.+|.  .++.+|++|+++++.                +..++. .+..+++|++|++++|..-...|.
T Consensus        14 ~~v~c~~~~-l~~iP~--~l~~~l~~L~l~~n~----------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPT--NLPETITEIRLEQNT----------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             TEEECTTSC-CSSCCS--SCCTTCCEEECCSSC----------------CCEECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CEEEcCCCC-cCcCCC--ccCcCCCEEECCCCc----------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            456666543 666664  233348887777643                222222 334466888888888543333356


Q ss_pred             cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----C
Q 023528          108 CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----F  181 (281)
Q Consensus       108 ~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~  181 (281)
                      .+..+++|++|++++ ..++.++..  ..+++|+.|++++| .++.++...+..+++|++|++++  +.++.++.    .
T Consensus        75 ~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~  150 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD--NKLQTIAKGTFSP  150 (220)
T ss_dssp             TTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTT
T ss_pred             HhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC--CcCCEECHHHHhC
Confidence            777888888888887 356666653  45678888888874 44455444677788888888887  45555543    3


Q ss_pred             CCCccEEeccC
Q 023528          182 PASLTQLGISD  192 (281)
Q Consensus       182 ~~~L~~L~l~~  192 (281)
                      .++|+.|++++
T Consensus       151 l~~L~~L~L~~  161 (220)
T 2v9t_B          151 LRAIQTMHLAQ  161 (220)
T ss_dssp             CTTCCEEECCS
T ss_pred             CCCCCEEEeCC
Confidence            55778888877

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.24  E-value=4e-10  Score=89.59  Aligned_cols=81  Identities=30%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             CCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528           87 PSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL  163 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (281)
                      .+++|++|+++++ .++.+|. .+..+++|++|+++++ .+..++..  ..+++|+.|++++| .++.++...+..+++|
T Consensus        50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           50 ELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence            3456666666663 3334432 2355566666666553 33344332  34455555555553 3333333334455555


Q ss_pred             ceEEeec
Q 023528          164 RELRIRG  170 (281)
Q Consensus       164 ~~L~l~~  170 (281)
                      ++|++++
T Consensus       127 ~~L~l~~  133 (208)
T 2o6s_A          127 KDLRLYQ  133 (208)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            5555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.21  E-value=1.2e-10  Score=100.69  Aligned_cols=156  Identities=23%  Similarity=0.184  Sum_probs=115.3

Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccccc-cCc-CCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcccc
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPN-CIH-NLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPL  152 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~  152 (281)
                      .+..+|....  +.++.|+++++ .+..++. .+. .+++|++|+++++ .+..++..  ..+++|+.|++++| .++.+
T Consensus        29 ~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~  103 (361)
T 2xot_A           29 QLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTL  103 (361)
T ss_dssp             CCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred             CcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcC
Confidence            4556665443  37899999995 5666654 455 8999999999984 66666643  67899999999995 56677


Q ss_pred             chhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC----CCCCCcCEEeccCCCCccccc
Q 023528          153 FEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG----ENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~i~  224 (281)
                      +...+..+++|+.|++++  +.+..++.    ..++|+.|++++ +.++.+|...    ..+++|++|++++ +.++.++
T Consensus       104 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~  179 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLP  179 (361)
T ss_dssp             CTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCC
T ss_pred             CHHHhCCCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccC
Confidence            666788999999999998  55655532    567999999999 6888888654    4689999999999 5677776


Q ss_pred             CCCC--CCC--CcEEecCCCc
Q 023528          225 KQGL--PKS--LLRLGIDDCP  241 (281)
Q Consensus       225 ~~~~--~~~--L~~L~l~~c~  241 (281)
                      ...+  ++.  ++.|++.+++
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSC
T ss_pred             HHHhhhccHhhcceEEecCCC
Confidence            4222  333  4778888744

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=4e-10  Score=90.58  Aligned_cols=133  Identities=15%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCccCCCCCCCCCCccEEEeccCcccccc-c-ccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCcccc
Q 023528           77 NLESFPEGGLPSTKLTRLTIWKCKNLKAL-P-NCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPL  152 (281)
Q Consensus        77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-p-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~  152 (281)
                      .+..+|....  +.+++|+++++ .+..+ | ..+..+++|++|+++++ .++.++.  ...+++|+.|++++| .++.+
T Consensus        22 ~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~   96 (220)
T 2v70_A           22 KLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENV   96 (220)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred             CcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCcc
Confidence            3555665443  36788888885 44544 3 23677888888888874 4555554  256778888888874 44555


Q ss_pred             chhhhccCCCcceEEeecCCCCCccCC-C---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          153 FEWGLDRFACLRELRIRGGCPDLVSSP-R---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      +...+..+++|++|++++  +.+..++ .   ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus        97 ~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           97 QHKMFKGLESLKTLMLRS--NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CGGGGTTCSSCCEEECTT--SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CHhHhcCCcCCCEEECCC--CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence            555677788888888887  4444442 2   345677777777 4566653233 66777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.19  E-value=6.4e-10  Score=89.35  Aligned_cols=101  Identities=11%  Similarity=0.121  Sum_probs=54.3

Q ss_pred             CCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528           87 PSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL  163 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  163 (281)
                      .+++|++|+++++. ++.++ ..+..+++|++|+++++ .+..++..  ..+++|++|++++| .++.++...+..+++|
T Consensus        55 ~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           55 KLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTC
T ss_pred             cCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccC
Confidence            35566666666643 44443 35566666666666653 34444332  34566666666663 3333333345566666


Q ss_pred             ceEEeecCCCCCccC-CC---CCCCccEEeccC
Q 023528          164 RELRIRGGCPDLVSS-PR---FPASLTQLGISD  192 (281)
Q Consensus       164 ~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~  192 (281)
                      ++|++++  +.+..+ +.   ..++|+.|++++
T Consensus       132 ~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          132 RLLSLYD--NQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             SEEECTT--SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCC--CcCCEECHHHhcCCCCCCEEEecC
Confidence            6666665  344444 22   344566666666

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=2.4e-10  Score=87.72  Aligned_cols=126  Identities=18%  Similarity=0.160  Sum_probs=77.7

Q ss_pred             ccCcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCc
Q 023528           24 LPATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCK  100 (281)
Q Consensus        24 ~~~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  100 (281)
                      .+++|++|++++|. +.  .+|. +..+++ |++|++++|. +.               .+ ..+..+++|++|++++|.
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~-L~~L~l~~n~-l~---------------~~-~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVN-LEFLSLINVG-LI---------------SV-SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGG-CCEEEEESSC-CC---------------CC-SSCCCCSSCCEEEEESCC
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCC-CCEEeCcCCC-CC---------------Ch-hhhccCCCCCEEECcCCc
Confidence            44678888888776 44  5555 466777 8888887754 11               12 333446678888888865


Q ss_pred             ccccccccCcCCCCccEEeecCCcCCcccC---CCCCCCCcCeEEecCCCCccccch---hhhccCCCcceEEeec
Q 023528          101 NLKALPNCIHNLTSLLHLEIRECRSLVSFP---EDGFPTNLQSLVVDDLKISKPLFE---WGLDRFACLRELRIRG  170 (281)
Q Consensus       101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~  170 (281)
                      ....+|..+..+++|++|+++++ .++.++   ....+++|+.|++++|. +...+.   ..+..+++|++|++++
T Consensus        83 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           83 IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence            43335555556778888888775 444443   22456677777777643 333332   3456666777776666

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=2.5e-10  Score=87.65  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             CCccEEEeccCccc-ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           89 TKLTRLTIWKCKNL-KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        89 ~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      ++|+.|++++|... ..+|..+..+++|++|+++++. +..+.....+++|+.|++++|.....++ ..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEe
Confidence            46677777765422 2566556666777777776643 4444333556666777776644333233 2345567777777


Q ss_pred             eecCCCCCccCC--C---CCCCccEEeccCCCCCccccc----cCCCCCCcCEEeccCCCCccccc
Q 023528          168 IRGGCPDLVSSP--R---FPASLTQLGISDMPTLKCLSS----VGENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       168 l~~~~~~~~~~~--~---~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~i~  224 (281)
                      +++  +.++.++  .   ..++|+.|++++ +.+..++.    .+..+++|++|++++|. +.++|
T Consensus       102 Ls~--N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A          102 LSG--NKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             CBS--SSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             ccC--CccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            776  3444443  1   345667777776 45666653    22677777777777753 44444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.16  E-value=5.5e-12  Score=109.16  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             ccCcCceeeccCCcCcccccc------CCCcC-CcCcEEEecCCc
Q 023528           24 LPATLEHLEVTHCSNLAFLSW------NGNLP-RALKYLYVKDCS   61 (281)
Q Consensus        24 ~~~~L~~L~l~~~~~l~~l~~------~~~l~-~~L~~L~l~~~~   61 (281)
                      .+++|++|++++|. +...+.      +..++ + |++|++++|.
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N~   62 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPAS-VTSLNLSGNS   62 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTT-CCEEECCSSC
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCc-eeEEECcCCC
Confidence            44568888888776 554432      55666 6 8888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.15  E-value=1.7e-11  Score=112.56  Aligned_cols=127  Identities=12%  Similarity=0.027  Sum_probs=64.7

Q ss_pred             CCCCccEEeecCCcCCcccCC--C-CCCCCcCeEEecC---CCCccccc-----hhhhccCCCcceEEeecCCCC-CccC
Q 023528          111 NLTSLLHLEIRECRSLVSFPE--D-GFPTNLQSLVVDD---LKISKPLF-----EWGLDRFACLRELRIRGGCPD-LVSS  178 (281)
Q Consensus       111 ~l~~L~~L~l~~~~~l~~l~~--~-~~~~~L~~L~l~~---~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~-~~~~  178 (281)
                      .+++|++|++.. ..++....  . ..+++|++|++.+   |+.++..+     ...+..+++|+.|+++. |.. +.+.
T Consensus       376 ~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l~~~  453 (592)
T 3ogk_B          376 GCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQGGLTDL  453 (592)
T ss_dssp             HCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CGGGCCHH
T ss_pred             hCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CCCCccHH
Confidence            456666666632 23321110  0 1255677777763   34444321     11245567777777765 442 1110


Q ss_pred             -C----CCCCCccEEeccCCCCCcc--ccccCCCCCCcCEEeccCCCCccc--ccCC-CCCCCCcEEecCCCc
Q 023528          179 -P----RFPASLTQLGISDMPTLKC--LSSVGENLTSLETLDLSNCPKLKY--FSKQ-GLPKSLLRLGIDDCP  241 (281)
Q Consensus       179 -~----~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~--i~~~-~~~~~L~~L~l~~c~  241 (281)
                       .    ...++|+.|++++| .++.  ++.....+++|++|++++|. ++.  ++.. ..+++|++|++++|.
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence             0    03456777777764 3432  23111566777777777775 432  1211 125677777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.13  E-value=4.5e-12  Score=116.48  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             CccceeecccCCCCCcc-----cCCCCCccCcCceeeccCCc-Ccc--cccc-CCCcCCcCcEEEecCCcchh
Q 023528            1 MKQDISRSSSGSTSRTP-----FSSENELPATLEHLEVTHCS-NLA--FLSW-NGNLPRALKYLYVKDCSKLE   64 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~-~l~--~l~~-~~~l~~~L~~L~l~~~~~l~   64 (281)
                      +++|++|++++|. ++.     ++......++|++|++++|. .+.  .+.. ...+++ |++|++++|..+.
T Consensus       155 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~  225 (594)
T 2p1m_B          155 CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN-LKSLKLNRAVPLE  225 (594)
T ss_dssp             CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT-CCEEECCTTSCHH
T ss_pred             CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC-CcEEecCCCCcHH
Confidence            3678889998876 332     21111123589999998876 111  1111 234577 8888888874443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=2.4e-12  Score=114.67  Aligned_cols=57  Identities=14%  Similarity=0.040  Sum_probs=32.6

Q ss_pred             ccceeecccCCCCCcccCCCC--CccCcCceeeccCCcCccc-----ccc-CCCcCCcCcEEEecCCc
Q 023528            2 KQDISRSSSGSTSRTPFSSEN--ELPATLEHLEVTHCSNLAF-----LSW-NGNLPRALKYLYVKDCS   61 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~-~~~l~~~L~~L~l~~~~   61 (281)
                      +++++|+++++. ++..+...  ...++|++|++++|. +..     ++. +..+++ |++|+++++.
T Consensus         3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~   67 (461)
T 1z7x_W            3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPA-LAELNLRSNE   67 (461)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTT-CCEEECTTCC
T ss_pred             ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCC-cCEEeCCCCc
Confidence            456777777543 54331111  112578888888776 442     222 455677 8888887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.11  E-value=8.3e-12  Score=108.91  Aligned_cols=224  Identities=17%  Similarity=0.073  Sum_probs=127.3

Q ss_pred             CccceeecccCCCCCcc-----cCCCCCccCcCceeeccCCc--Ccc-cccc--------CCCcCCcCcEEEecCCcchh
Q 023528            1 MKQDISRSSSGSTSRTP-----FSSENELPATLEHLEVTHCS--NLA-FLSW--------NGNLPRALKYLYVKDCSKLE   64 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~--~l~-~l~~--------~~~l~~~L~~L~l~~~~~l~   64 (281)
                      +++++.|+++++. ++.     ++....-.++|++|++++|.  .+. .+|.        +..+++ |++|+++++..-.
T Consensus        31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-LHTVRLSDNAFGP  108 (386)
T ss_dssp             CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-CCEEECCSCCCCT
T ss_pred             CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc-ccEEECCCCcCCH
Confidence            3568888888864 442     10001123699999999974  222 2222        367888 9999999875221


Q ss_pred             ccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc----cccccCcCC---------CCccEEeecCCcCC-cccC
Q 023528           65 SLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK----ALPNCIHNL---------TSLLHLEIRECRSL-VSFP  130 (281)
Q Consensus        65 ~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~----~lp~~~~~l---------~~L~~L~l~~~~~l-~~l~  130 (281)
                      .           ....++..+..+++|++|++++|..-.    .++..+..+         ++|++|+++++... ..++
T Consensus       109 ~-----------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A          109 T-----------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             T-----------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             H-----------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            0           011122222335678888888865321    222233334         78888888775322 2222


Q ss_pred             C----CCCCCCcCeEEecCCCCccc----cchhhhccCCCcceEEeecCCCCC-----ccCCC---CCCCccEEeccCCC
Q 023528          131 E----DGFPTNLQSLVVDDLKISKP----LFEWGLDRFACLRELRIRGGCPDL-----VSSPR---FPASLTQLGISDMP  194 (281)
Q Consensus       131 ~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~---~~~~L~~L~l~~c~  194 (281)
                      .    ...+++|++|++++|.....    +....+.++++|++|++++ |. +     ..++.   ..++|++|++++| 
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-  254 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NT-FTHLGSSALAIALKSWPNLRELGLNDC-  254 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SC-CHHHHHHHHHHHGGGCTTCCEEECTTC-
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-CC-CCcHHHHHHHHHHccCCCcCEEECCCC-
Confidence            1    13456888888887643211    2222466777888888887 43 3     22332   3457888888884 


Q ss_pred             CCcc-----ccccC--CCCCCcCEEeccCCCCccc-----ccCC--CCCCCCcEEecCCCc
Q 023528          195 TLKC-----LSSVG--ENLTSLETLDLSNCPKLKY-----FSKQ--GLPKSLLRLGIDDCP  241 (281)
Q Consensus       195 ~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~~-----i~~~--~~~~~L~~L~l~~c~  241 (281)
                      .++.     ++...  +.+++|++|++++|. ++.     ++..  ..+++|++|++.+|+
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            4543     23222  337788888888853 444     4432  125778888887775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.11  E-value=1.4e-11  Score=106.51  Aligned_cols=218  Identities=16%  Similarity=0.093  Sum_probs=129.3

Q ss_pred             ccceeecccCCCCCcccCCC----C---CccCcCceeeccCCcCcccccc--CCCc-----CCcCcEEEecCCcchhccc
Q 023528            2 KQDISRSSSGSTSRTPFSSE----N---ELPATLEHLEVTHCSNLAFLSW--NGNL-----PRALKYLYVKDCSKLESLA   67 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~----~---~~~~~L~~L~l~~~~~l~~l~~--~~~l-----~~~L~~L~l~~~~~l~~~p   67 (281)
                      +.++.|+++++. ++.. +.    .   .++.+|++|++++|. +.....  +..+     ++ |++|++++|. +...+
T Consensus        22 ~~L~~L~Ls~n~-l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~-l~~~~   96 (362)
T 3goz_A           22 HGVTSLDLSLNN-LYSI-STVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN-VTSLNLSGNF-LSYKS   96 (362)
T ss_dssp             TTCCEEECTTSC-GGGS-CHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT-CCEEECCSSC-GGGSC
T ss_pred             CCceEEEccCCC-CChH-HHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC-ccEEECcCCc-CChHH
Confidence            358899999866 7766 32    1   122389999999986 554322  3333     77 9999999986 33211


Q ss_pred             cceeecCCCCCccCCCCCCCC-CCccEEEeccCccccccc-cc----CcC-CCCccEEeecCCcCCcc-----cCCC--C
Q 023528           68 ERIWIFGCPNLESFPEGGLPS-TKLTRLTIWKCKNLKALP-NC----IHN-LTSLLHLEIRECRSLVS-----FPED--G  133 (281)
Q Consensus        68 ~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~lp-~~----~~~-l~~L~~L~l~~~~~l~~-----l~~~--~  133 (281)
                      .          ..+......+ ++|++|++++|. ++..+ ..    +.. .++|++|+++++ .++.     ++..  .
T Consensus        97 ~----------~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~  164 (362)
T 3goz_A           97 S----------DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAA  164 (362)
T ss_dssp             H----------HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHT
T ss_pred             H----------HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhc
Confidence            0          0000001112 488899998865 34332 22    233 368899999885 3332     1111  2


Q ss_pred             CCCCcCeEEecCCCCccccch----hhhccC-CCcceEEeecCCCCCcc-----CCC----CCCCccEEeccCCCCCccc
Q 023528          134 FPTNLQSLVVDDLKISKPLFE----WGLDRF-ACLRELRIRGGCPDLVS-----SPR----FPASLTQLGISDMPTLKCL  199 (281)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~~-----~~~----~~~~L~~L~l~~c~~l~~l  199 (281)
                      .+++|++|++++|.. +....    ..+... ++|++|++++  +.++.     ++.    .+++|++|++++ +.++..
T Consensus       165 ~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~  240 (362)
T 3goz_A          165 IPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGP  240 (362)
T ss_dssp             SCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCC
T ss_pred             CCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcH
Confidence            235889999988643 32222    123445 5899999988  34554     222    356899999998 466554


Q ss_pred             cc----cC-CCCCCcCEEeccCCCCcccc--------cC-CCCCCCCcEEecCCCc
Q 023528          200 SS----VG-ENLTSLETLDLSNCPKLKYF--------SK-QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       200 ~~----~~-~~l~~L~~L~l~~c~~l~~i--------~~-~~~~~~L~~L~l~~c~  241 (281)
                      +.    .. ..+++|++|++++|. +..+        +. ....++|++|++++++
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            32    22 677889999998863 2222        11 1225678888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.10  E-value=7.2e-12  Score=115.12  Aligned_cols=59  Identities=14%  Similarity=0.048  Sum_probs=39.3

Q ss_pred             CccceeecccCCCCCcc--cCCCCCccCcCceeeccCCcCccc-----cccC-CCcCCcCcEEEecCCc
Q 023528            1 MKQDISRSSSGSTSRTP--FSSENELPATLEHLEVTHCSNLAF-----LSWN-GNLPRALKYLYVKDCS   61 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~-~~l~~~L~~L~l~~~~   61 (281)
                      +++++.|++.+|..++.  ++......++|++|++++|. +..     ++.+ ..+++ |++|++++|.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~-L~~L~l~~~~  195 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTS-LVSLNISCLA  195 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCC-CCEEECTTCC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCc-CcEEEecccC
Confidence            36788999998866654  21111123699999999887 332     3332 35678 9999999885

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=4.6e-10  Score=84.34  Aligned_cols=124  Identities=17%  Similarity=0.120  Sum_probs=82.6

Q ss_pred             cCcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcc
Q 023528           25 PATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN  101 (281)
Q Consensus        25 ~~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  101 (281)
                      +++|+.|++++|. +.  .+|. +..+++ |++|++++|. +               ..+ ..+..+++|++|++++|..
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~-L~~L~l~~n~-l---------------~~~-~~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLEGLTDEFEE-LEFLSTINVG-L---------------TSI-ANLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCCSCCTTCTT-CCEEECTTSC-C---------------CCC-TTCCCCTTCCEEECCSSCC
T ss_pred             CccCeEEEccCCc-CChhHHHHHHhhcCC-CcEEECcCCC-C---------------CCc-hhhhcCCCCCEEECCCCcc
Confidence            3588888988886 44  5655 577888 8888888764 1               122 3344567888888888654


Q ss_pred             cccccccCcCCCCccEEeecCCcCCcccC---CCCCCCCcCeEEecCCCCccccch---hhhccCCCcceEEee
Q 023528          102 LKALPNCIHNLTSLLHLEIRECRSLVSFP---EDGFPTNLQSLVVDDLKISKPLFE---WGLDRFACLRELRIR  169 (281)
Q Consensus       102 l~~lp~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~  169 (281)
                      ...+|..+..+++|++|+++++ .++.++   ....+++|++|++++| .++..+.   ..+..+++|++|+++
T Consensus        77 ~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           77 SGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            4436666667888888888875 344432   2356778888888875 3444433   356777778777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.05  E-value=8e-12  Score=111.32  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=16.3

Q ss_pred             cCceeeccCCcCccc-----cc-cCCCcCCcCcEEEecCCc
Q 023528           27 TLEHLEVTHCSNLAF-----LS-WNGNLPRALKYLYVKDCS   61 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~-----l~-~~~~l~~~L~~L~l~~~~   61 (281)
                      +|++|++++|. +..     ++ .+..+++ |++|+++++.
T Consensus        86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~  124 (461)
T 1z7x_W           86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPT-LQELHLSDNL  124 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHTTSCTT-CCEEECCSSB
T ss_pred             ceeEEEccCCC-CCHHHHHHHHHHHccCCc-eeEEECCCCc
Confidence            45555555554 321     11 1445555 6666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.02  E-value=6.2e-10  Score=83.61  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=40.0

Q ss_pred             CCccEEEeccCccc-ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           89 TKLTRLTIWKCKNL-KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        89 ~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      ++|+.|++++|... +.+|..+..+++|++|+++++ .+..+.....+++|+.|++++|.....++. .+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEE
Confidence            35666666665322 245555556666666666654 333333334455555555555332222322 334455555555


Q ss_pred             eec
Q 023528          168 IRG  170 (281)
Q Consensus       168 l~~  170 (281)
                      +++
T Consensus        95 ls~   97 (149)
T 2je0_A           95 LSG   97 (149)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=6e-11  Score=108.50  Aligned_cols=173  Identities=17%  Similarity=0.123  Sum_probs=117.8

Q ss_pred             CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchh-------------ccccc---------ee-ecCC------
Q 023528           26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLE-------------SLAER---------IW-IFGC------   75 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~-------------~~p~~---------L~-l~~~------   75 (281)
                      +.|+.|+++++. ++.+|. ++.+++ |++|+++++..+.             ..|..         ++ ++.+      
T Consensus       349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          349 EQLFRCELSVEK-STVLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTSSSCCCCHHH-HHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             ccceeccCChhh-HHhhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            688888888766 667765 677778 8888876543111             11111         22 0000      


Q ss_pred             ------CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCC
Q 023528           76 ------PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKI  148 (281)
Q Consensus        76 ------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~  148 (281)
                            ..+..++     ...|+.|++++| .++.+|. +..+++|+.|+++++ .++.+|.. +.+++|+.|++++| .
T Consensus       427 ~l~l~~n~i~~l~-----~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~  497 (567)
T 1dce_A          427 SKFLLENSVLKME-----YADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-A  497 (567)
T ss_dssp             HHHHHHHHHHHHH-----HTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred             hhhhhcccccccC-----ccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-C
Confidence                  0111111     236889999995 6667875 889999999999984 56677654 67889999999984 5


Q ss_pred             ccccchhhhccCCCcceEEeecCCCCCccC--CC---CCCCccEEeccCCCCCccccccC----CCCCCcCEEec
Q 023528          149 SKPLFEWGLDRFACLRELRIRGGCPDLVSS--PR---FPASLTQLGISDMPTLKCLSSVG----ENLTSLETLDL  214 (281)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~---~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l  214 (281)
                      ++.+|  .+..+++|+.|++++  +.+..+  |.   ..++|+.|++++ +.+..+|...    ..+++|+.|++
T Consensus       498 l~~lp--~l~~l~~L~~L~Ls~--N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          498 LENVD--GVANLPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCCG--GGTTCSSCCEEECCS--SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCc--ccCCCCCCcEEECCC--CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence            55566  688999999999998  566666  44   567899999999 5677766433    34788888753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.99  E-value=2.7e-09  Score=82.54  Aligned_cols=61  Identities=20%  Similarity=0.132  Sum_probs=36.1

Q ss_pred             CccEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccccCC-----CCCCCCcEEecCCCchHHHH
Q 023528          184 SLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYFSKQ-----GLPKSLLRLGIDDCPLMEKR  246 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i~~~-----~~~~~L~~L~l~~c~~l~~~  246 (281)
                      +|+.|++++ +.++.+|.  .+..+++|++|++++| .+..++..     +.+++|++|++.++..-+..
T Consensus        89 ~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~  156 (176)
T 1a9n_A           89 DLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ  156 (176)
T ss_dssp             TCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             CCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence            444444444 35555553  2366777888888774 45555542     22577888888777754443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.98  E-value=8.3e-10  Score=85.43  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=91.8

Q ss_pred             cCcCceeeccCCcCccccccCCCcC-CcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc
Q 023528           25 PATLEHLEVTHCSNLAFLSWNGNLP-RALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK  103 (281)
Q Consensus        25 ~~~L~~L~l~~~~~l~~l~~~~~l~-~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  103 (281)
                      +++|++|++++|. +..++.+..+. + |++|+++++. +.               .+ ..+..+++|++|++++| .+.
T Consensus        18 ~~~L~~L~l~~n~-l~~i~~~~~~~~~-L~~L~Ls~N~-l~---------------~~-~~l~~l~~L~~L~Ls~N-~l~   77 (176)
T 1a9n_A           18 AVRDRELDLRGYK-IPVIENLGATLDQ-FDAIDFSDNE-IR---------------KL-DGFPLLRRLKTLLVNNN-RIC   77 (176)
T ss_dssp             TTSCEEEECTTSC-CCSCCCGGGGTTC-CSEEECCSSC-CC---------------EE-CCCCCCSSCCEEECCSS-CCC
T ss_pred             cCCceEEEeeCCC-CchhHHhhhcCCC-CCEEECCCCC-CC---------------cc-cccccCCCCCEEECCCC-ccc
Confidence            3689999999886 77777766666 6 9999998864 22               22 23345679999999996 566


Q ss_pred             cccccC-cCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCCCccccchh---hhccCCCcceEEeec
Q 023528          104 ALPNCI-HNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLKISKPLFEW---GLDRFACLRELRIRG  170 (281)
Q Consensus       104 ~lp~~~-~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~  170 (281)
                      .+|..+ ..+++|++|+++++ .++.++.   ...+++|+.|++++|. +...+..   .+..+++|+.|+++.
T Consensus        78 ~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             EECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence            676554 78999999999985 5566664   3567899999999864 4444432   477899999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.98  E-value=2.6e-10  Score=104.65  Aligned_cols=148  Identities=19%  Similarity=0.074  Sum_probs=86.6

Q ss_pred             CCCCccEEEeccCccccc----ccccCcCCCCccEEeecCCcCC----cccCCC-CCCCCcCeEEecCCCCccccchhhh
Q 023528           87 PSTKLTRLTIWKCKNLKA----LPNCIHNLTSLLHLEIRECRSL----VSFPED-GFPTNLQSLVVDDLKISKPLFEWGL  157 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l----~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~  157 (281)
                      .+++|++|++++|.....    ++.....+++|++|+++++..-    ..++.. ..+++|++|++.+|. +..++ ..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~-~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELV-GFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH-HHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH-HHH
Confidence            367888888888753211    2233456788888888764221    122211 346788889888854 33344 357


Q ss_pred             ccCCCcceEEeecCCCCCcc---CCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC---CCC
Q 023528          158 DRFACLRELRIRGGCPDLVS---SPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK---QGL  228 (281)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~---~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~---~~~  228 (281)
                      ..+++|++|+++. +.....   ...   .+++|+.|+++++ ....+|.....+++|++|++++|. +.....   ...
T Consensus       240 ~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~  316 (592)
T 3ogk_B          240 KAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQK  316 (592)
T ss_dssp             HHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred             hhhhHHHhhcccc-cccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence            7788888888875 322211   111   4557777777773 445555333667778888887765 332111   123


Q ss_pred             CCCCcEEecCC
Q 023528          229 PKSLLRLGIDD  239 (281)
Q Consensus       229 ~~~L~~L~l~~  239 (281)
                      +++|++|++.+
T Consensus       317 ~~~L~~L~L~~  327 (592)
T 3ogk_B          317 CPNLEVLETRN  327 (592)
T ss_dssp             CTTCCEEEEEG
T ss_pred             CcCCCEEeccC
Confidence            56677776663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.95  E-value=1e-08  Score=80.57  Aligned_cols=88  Identities=18%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchh
Q 023528           78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEW  155 (281)
Q Consensus        78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~  155 (281)
                      +..+|....  ++|++|+++++ .++.+|..+..+++|++|+++++ .++.++..  ..+++|++|++++| .++.++..
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~   96 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR   96 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred             CCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH
Confidence            445554332  36677777663 44556666666666666666663 44444332  34455555555552 33333333


Q ss_pred             hhccCCCcceEEeec
Q 023528          156 GLDRFACLRELRIRG  170 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~  170 (281)
                      .+..+++|++|++++
T Consensus        97 ~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           97 TFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TTTTCTTCCEEECCS
T ss_pred             HhCCCCCCCEEECCC
Confidence            344455555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=1.6e-08  Score=78.04  Aligned_cols=119  Identities=25%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      .+.+++++ ..+..+|..+  .++|++|+++++ .++.++..  ..+++|++|++++| .++.++...+..+++|++|++
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence            45677766 4566666443  367788888774 45555542  45677777777774 445555445666777777777


Q ss_pred             ecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          169 RGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       169 ~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      ++  +.++.++.    ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus        84 ~~--N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           84 HE--NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CS--SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CC--CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence            76  34444443    235666666666 4555665443 55666666666664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.93  E-value=1.1e-08  Score=80.17  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             CccEEEeccCccccccccc--CcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528           90 KLTRLTIWKCKNLKALPNC--IHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE  165 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  165 (281)
                      +|++|+++++ .+..++..  +..+++|++|+++++ .++.++.  ...+++|+.|++++| .++.++...+..+++|++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCE
Confidence            5666666663 33444321  455566666666553 3333321  133455555555552 232332223444444444


Q ss_pred             EEeec
Q 023528          166 LRIRG  170 (281)
Q Consensus       166 L~l~~  170 (281)
                      |++++
T Consensus       107 L~L~~  111 (192)
T 1w8a_A          107 LNLYD  111 (192)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            44444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.93  E-value=2.1e-08  Score=77.48  Aligned_cols=100  Identities=26%  Similarity=0.334  Sum_probs=55.8

Q ss_pred             CCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528           89 TKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE  165 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  165 (281)
                      ++|++|+++++. +..+|. .+..+++|++|+++++ .++.++..  ..+++|+.|++++| .++.++...+..+++|++
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence            366666666643 344442 3456666666666663 44444432  34566666666663 344444434556666666


Q ss_pred             EEeecCCCCCccCCC----CCCCccEEeccCC
Q 023528          166 LRIRGGCPDLVSSPR----FPASLTQLGISDM  193 (281)
Q Consensus       166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c  193 (281)
                      |++++  +.++.++.    ..++|+.|+++++
T Consensus       105 L~l~~--N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          105 LALDT--NQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCS--SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECcC--CcceEeCHHHhcCCcccCEEEecCC
Confidence            66666  34444443    2456666666663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.92  E-value=2.5e-08  Score=78.29  Aligned_cols=118  Identities=18%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528           92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus        92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      +.+++++ ..+..+|..+  .+.+++|+++++ .+..+|.. ..+++|+.|++++| .++.++...|..+++|++|++++
T Consensus        13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence            4566666 3456666544  246677777663 44455422 34566666666663 34444444456666666666665


Q ss_pred             CCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          171 GCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       171 ~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                        +.+..++.    ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus        88 --N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           88 --NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             --SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             --CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence              33444432    234555666655 4555555332 45555555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.90  E-value=1.9e-08  Score=85.61  Aligned_cols=95  Identities=11%  Similarity=0.081  Sum_probs=55.0

Q ss_pred             CCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCcc-EEeccCCCCCccccccC-CCCCC
Q 023528          135 PTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLT-QLGISDMPTLKCLSSVG-ENLTS  208 (281)
Q Consensus       135 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~-~L~l~~c~~l~~l~~~~-~~l~~  208 (281)
                      +++|+.+++.+ +.++.++...|.++++|+.+++.. .  ++.++.    ...+|+ .+.+.+  .++.++... .++++
T Consensus       225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~-n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH-N--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT-T--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc-c--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence            45666666665 335555555666666777776665 2  444443    344566 666665  466665444 66666


Q ss_pred             cCEEeccCCCCcccccCCCC--CCCCcEEe
Q 023528          209 LETLDLSNCPKLKYFSKQGL--PKSLLRLG  236 (281)
Q Consensus       209 L~~L~l~~c~~l~~i~~~~~--~~~L~~L~  236 (281)
                      |+++++.+ +.+..++...+  +++|+.++
T Consensus       299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          299 LRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             CCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            77776655 45566655433  44555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.87  E-value=5e-08  Score=76.48  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=16.1

Q ss_pred             CCCCccEEEeccCccccccc-ccCcCCCCccEEeecC
Q 023528           87 PSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRE  122 (281)
Q Consensus        87 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~  122 (281)
                      .+++|++|+++++. ++.++ ..+..+++|++|++++
T Consensus        76 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCS
T ss_pred             CcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence            34455555555532 22222 2344555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1.4e-08  Score=86.52  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             CCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc-eEEeecCCCCCccCCC----CCCC
Q 023528          112 LTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR-ELRIRGGCPDLVSSPR----FPAS  184 (281)
Q Consensus       112 l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~----~~~~  184 (281)
                      +++|+.+++.+ ..++.++..  ..+++|+.+.+.++  ++.++...|.++++|+ .+.+..   .++.++.    ...+
T Consensus       225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence            78899999987 357788765  45789999999874  7778877899999999 999986   4455543    5678


Q ss_pred             ccEEeccCCCCCccccccC-CCCCCcCEEec
Q 023528          185 LTQLGISDMPTLKCLSSVG-ENLTSLETLDL  214 (281)
Q Consensus       185 L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l  214 (281)
                      |+.+++.+ +.++.++... .++++|+.++.
T Consensus       299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            99999988 7899998655 88889998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.78  E-value=1.8e-08  Score=92.20  Aligned_cols=117  Identities=18%  Similarity=0.121  Sum_probs=83.7

Q ss_pred             CcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC
Q 023528           52 LKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE  131 (281)
Q Consensus        52 L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~  131 (281)
                      |+.|+++++.                +..+|. +..+++|+.|++++| .+..+|..++.+++|+.|+++++ .++.+|.
T Consensus       443 L~~L~Ls~n~----------------l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~  503 (567)
T 1dce_A          443 VRVLHLAHKD----------------LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDG  503 (567)
T ss_dssp             CSEEECTTSC----------------CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGG
T ss_pred             ceEEEecCCC----------------CCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCcc
Confidence            7777777643                334444 555778999999985 56688888888999999999884 5666775


Q ss_pred             CCCCCCcCeEEecCCCCccccc-hhhhccCCCcceEEeecCCCCCccCCC-------CCCCccEEec
Q 023528          132 DGFPTNLQSLVVDDLKISKPLF-EWGLDRFACLRELRIRGGCPDLVSSPR-------FPASLTQLGI  190 (281)
Q Consensus       132 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l  190 (281)
                      .+.+++|+.|++++| .++.+. ...+..+++|+.|++++  +.+..++.       ..++|+.|++
T Consensus       504 l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~--N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          504 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG--NSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT--SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC--CcCCCCccHHHHHHHHCcccCccCC
Confidence            577889999999885 444442 33688899999999988  45555543       2457777753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.77  E-value=6.9e-07  Score=78.15  Aligned_cols=118  Identities=8%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCC----ccccchhhhccCCCcceEEeecCCCCCccCCC----CC
Q 023528          113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKI----SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FP  182 (281)
Q Consensus       113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~  182 (281)
                      .+|+.+.+.+  .++.++..  ..+++|+.+.+.++..    ...++...|.++++|+.+.+..   .++.++.    ..
T Consensus       248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF~~c  322 (401)
T 4fdw_A          248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLLGGN  322 (401)
T ss_dssp             CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTC
T ss_pred             CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhhcCC
Confidence            4455555532  23334332  2345556555554221    1124444455566666655553   2333332    33


Q ss_pred             CCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCC
Q 023528          183 ASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDD  239 (281)
Q Consensus       183 ~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~  239 (281)
                      .+|+.+.+..  .++.++... .++ +|+.+.+.++ ....++...   ++..++.|++..
T Consensus       323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence            5666666643  355555444 555 6777777663 344444322   234566666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.74  E-value=1.4e-08  Score=95.54  Aligned_cols=149  Identities=15%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             cCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhc
Q 023528           80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLD  158 (281)
Q Consensus        80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~  158 (281)
                      ..+..+..+++|+.|++++|. +..+|..+..+++|++|+++++ .+..+|.. ..+++|+.|++++|. ++.+|. .+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA-ELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS-SGG
T ss_pred             cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh-hhc
Confidence            334455556788888888854 4567777777888888888774 45566643 566777778877744 445554 467


Q ss_pred             cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCc-cccccCCCCC-CcCEEeccCCCCcccccCCCCCCCCc
Q 023528          159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLK-CLSSVGENLT-SLETLDLSNCPKLKYFSKQGLPKSLL  233 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~-~l~~~~~~l~-~L~~L~l~~c~~l~~i~~~~~~~~L~  233 (281)
                      .+++|++|++++  +.++.+|.   ..++|+.|+++++ .+. .+|..+.... ....++++++.....     .+..|+
T Consensus       291 ~l~~L~~L~L~~--N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~  362 (727)
T 4b8c_D          291 SCFQLKYFYFFD--NMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERR  362 (727)
T ss_dssp             GGTTCSEEECCS--SCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC--
T ss_pred             CCCCCCEEECCC--CCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccCc-----Cccccc
Confidence            777777777776  35556654   3456777777773 444 3332221111 111244555322211     345667


Q ss_pred             EEecCCC
Q 023528          234 RLGIDDC  240 (281)
Q Consensus       234 ~L~l~~c  240 (281)
                      .|++..+
T Consensus       363 ~l~l~~n  369 (727)
T 4b8c_D          363 FIEINTD  369 (727)
T ss_dssp             -------
T ss_pred             eeEeecc
Confidence            7766655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.65  E-value=5.7e-08  Score=91.46  Aligned_cols=109  Identities=17%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             cccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528          104 ALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--  180 (281)
Q Consensus       104 ~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--  180 (281)
                      ..|..+..++.|+.|+++++ .+..++.. ..+++|++|++++| .++.+|. .+..+++|++|++++  +.+..+|.  
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~--N~l~~lp~~~  289 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSH--NRLTSLPAEL  289 (727)
T ss_dssp             -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTT--SCCSSCCSSG
T ss_pred             cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcC--CcCCccChhh
Confidence            33556677788888888774 34455543 45677888888874 3446653 567778888888887  44556665  


Q ss_pred             -CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528          181 -FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP  218 (281)
Q Consensus       181 -~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  218 (281)
                       ..++|++|++++ +.++.+|..++.+++|++|++++|.
T Consensus       290 ~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          290 GSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             cCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCc
Confidence             345778888877 4677777555777788888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.63  E-value=5e-06  Score=72.67  Aligned_cols=203  Identities=10%  Similarity=0.100  Sum_probs=141.7

Q ss_pred             ceeecccCCCCCcccCCCCCcc-CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCcc
Q 023528            4 DISRSSSGSTSRTPFSSENELP-ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES   80 (281)
Q Consensus         4 l~~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~   80 (281)
                      ++++.+.  .+++.+ +..+|. .+|+.+.+..  .+..++.  |..+++ |+.+++.++                .+..
T Consensus       137 L~~i~l~--~~i~~I-~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~-L~~l~l~~n----------------~l~~  194 (401)
T 4fdw_A          137 IAKVVLN--EGLKSI-GDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYN-LKKADLSKT----------------KITK  194 (401)
T ss_dssp             CSEEECC--TTCCEE-CTTTTTTCCCCEEECCT--TCCEECSSTTTTCTT-CCEEECTTS----------------CCSE
T ss_pred             ccEEEeC--CCccEE-CHHhcCCCCceEEEeCC--CccEehHHHhhCccc-CCeeecCCC----------------cceE
Confidence            4445544  346666 444444 5788888875  4666654  677788 999888753                2344


Q ss_pred             CCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCCCC-CCCcCeEEecCCCCccccchhhhc
Q 023528           81 FPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDGF-PTNLQSLVVDDLKISKPLFEWGLD  158 (281)
Q Consensus        81 l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~  158 (281)
                      ++.....+.+|+.+.+..  .+..++ ..+..+++|+.+.+..  .++.++...+ -++|+.+.+.  +.++.+....|.
T Consensus       195 I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp--~~i~~I~~~aF~  268 (401)
T 4fdw_A          195 LPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLP--NGVTNIASRAFY  268 (401)
T ss_dssp             ECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEE--TTCCEECTTTTT
T ss_pred             echhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeC--CCccEEChhHhh
Confidence            444444467899999875  356665 5678899999999975  4666665422 2789999995  456777777899


Q ss_pred             cCCCcceEEeecCCCC----CccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC-
Q 023528          159 RFACLRELRIRGGCPD----LVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL-  228 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~----~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~-  228 (281)
                      ++++|+.+.+.+ ...    ...++.    ...+|+.+.+.+  .++.++... .++++|+.+.+..  .+..+...++ 
T Consensus       269 ~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~  343 (401)
T 4fdw_A          269 YCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN  343 (401)
T ss_dssp             TCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS
T ss_pred             CCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC
Confidence            999999999987 221    113433    566899999984  588888665 8889999999964  4777766444 


Q ss_pred             -CCCCcEEecCCC
Q 023528          229 -PKSLLRLGIDDC  240 (281)
Q Consensus       229 -~~~L~~L~l~~c  240 (281)
                       + +|+.+++.+.
T Consensus       344 ~~-~L~~l~l~~n  355 (401)
T 4fdw_A          344 NT-GIKEVKVEGT  355 (401)
T ss_dssp             SS-CCCEEEECCS
T ss_pred             CC-CCCEEEEcCC
Confidence             5 8999988765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.57  E-value=5.3e-07  Score=69.14  Aligned_cols=75  Identities=20%  Similarity=0.165  Sum_probs=37.3

Q ss_pred             ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      .+.+++++ ..+..+|..+  .+++++|+++++ .+..++..  ..+++|+.|++++| .++.++...+..+++|++|++
T Consensus        11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence            45666666 3455565544  256666666652 44444322  34455555555552 333444333444555555555


Q ss_pred             ec
Q 023528          169 RG  170 (281)
Q Consensus       169 ~~  170 (281)
                      ++
T Consensus        86 ~~   87 (170)
T 3g39_A           86 ND   87 (170)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.55  E-value=6.6e-07  Score=68.90  Aligned_cols=98  Identities=24%  Similarity=0.267  Sum_probs=46.0

Q ss_pred             cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEee
Q 023528           92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR  169 (281)
Q Consensus        92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  169 (281)
                      +.+++++ ..++.+|..+.  ++|++|+++++ .+..++..  ..+++|+.|++++| .++.++...+..++        
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~--------   81 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLT--------   81 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT--------
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcc--------
Confidence            4555555 34455554442  55555555552 33333221  23444444444442 33333332333444        


Q ss_pred             cCCCCCccCCCCCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          170 GGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                                    +|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus        82 --------------~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           82 --------------QLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             --------------TCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             --------------hhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence                          445555554 4555555432 55666666666663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=5.1e-10  Score=88.35  Aligned_cols=107  Identities=19%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             ccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CC
Q 023528          105 LPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FP  182 (281)
Q Consensus       105 lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~  182 (281)
                      +|..+..+++|++|+++++ .+..++....+++|+.|++++| .++.++. .+..+++|++|++++  +.+..++.  ..
T Consensus        40 l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~L~~--N~l~~l~~~~~l  114 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISY--NQIASLSGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEE-EECSCSS-HHHHHHHCSEEEEEE--EECCCHHHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCC-Ccccccc-hhhcCCcCCEEECcC--CcCCcCCccccC
Confidence            3334444445555555442 2333332223344444444442 2223321 233334455555554  22322222  22


Q ss_pred             CCccEEeccCCCCCccccc--cCCCCCCcCEEeccCC
Q 023528          183 ASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNC  217 (281)
Q Consensus       183 ~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c  217 (281)
                      ++|+.|++++ +.++.++.  .+..+++|++|++++|
T Consensus       115 ~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          115 VNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCC
Confidence            3445555554 34444432  1255666666666664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.48  E-value=1.4e-06  Score=66.78  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=37.8

Q ss_pred             CccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           90 KLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      +|++|+++++ .+..+ |..+..+++|++|+++++ .+..++..  ..+++|+.|++++| .++.++...+..+++|++|
T Consensus        31 ~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           31 TTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence            5555555553 23333 334455555555555552 34444432  23455555555552 3334443345555566666


Q ss_pred             Eeec
Q 023528          167 RIRG  170 (281)
Q Consensus       167 ~l~~  170 (281)
                      ++++
T Consensus       108 ~L~~  111 (170)
T 3g39_A          108 WLLN  111 (170)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            6655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.45  E-value=1.5e-06  Score=66.92  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=38.0

Q ss_pred             CccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528           90 KLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL  166 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  166 (281)
                      +|++|+++++. +..+ |..+..+++|++|++++ ..+..++..  ..+++|+.|++++ +.++.++...+..+++|++|
T Consensus        34 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           34 DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEE
T ss_pred             CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEE
Confidence            55555555532 2223 33445555555555555 244444432  3345555555555 23334443335555566666


Q ss_pred             Eeec
Q 023528          167 RIRG  170 (281)
Q Consensus       167 ~l~~  170 (281)
                      ++++
T Consensus       111 ~L~~  114 (174)
T 2r9u_A          111 YLYN  114 (174)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            6555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=3.4e-07  Score=70.18  Aligned_cols=87  Identities=9%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             CCccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CC----CCCcCeEEecCCCCccccchhhhccCC
Q 023528           89 TKLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GF----PTNLQSLVVDDLKISKPLFEWGLDRFA  161 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~----~~~L~~L~l~~~~~~~~~~~~~~~~l~  161 (281)
                      .+|+.|++++|. ++.. -..+..+++|++|++++|..++.....  ..    .++|++|++++|..+++.....+.+++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            378888888876 4322 134567888888888888666532211  11    246888888888877665555567777


Q ss_pred             CcceEEeecCCCCCcc
Q 023528          162 CLRELRIRGGCPDLVS  177 (281)
Q Consensus       162 ~L~~L~l~~~~~~~~~  177 (281)
                      +|++|++++ |..+++
T Consensus       140 ~L~~L~L~~-c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSD-LPGVKE  154 (176)
T ss_dssp             TCCEEEEES-CTTCCC
T ss_pred             CCCEEECCC-CCCCCc
Confidence            888888887 766654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.38  E-value=6e-09  Score=82.13  Aligned_cols=10  Identities=40%  Similarity=0.684  Sum_probs=6.0

Q ss_pred             CCCCCcCEEe
Q 023528          204 ENLTSLETLD  213 (281)
Q Consensus       204 ~~l~~L~~L~  213 (281)
                      ..+++|++|+
T Consensus       171 ~~l~~L~~Ld  180 (198)
T 1ds9_A          171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCSEEC
T ss_pred             HhCCCcEEEC
Confidence            4556666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=2.3e-07  Score=71.13  Aligned_cols=84  Identities=14%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             CcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----C----CCCccEEeccCCCCCccccccC-CCCC
Q 023528          137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----F----PASLTQLGISDMPTLKCLSSVG-ENLT  207 (281)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~----~~~L~~L~l~~c~~l~~l~~~~-~~l~  207 (281)
                      .|+.|++++|. +++..-..+..+++|++|++++ |..+++...    .    .++|++|++++|..+++-.... ..++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~-C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEES-CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCC-CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34455555543 3222222344555555555555 554443110    0    1134444444444444321111 3445


Q ss_pred             CcCEEeccCCCCccc
Q 023528          208 SLETLDLSNCPKLKY  222 (281)
Q Consensus       208 ~L~~L~l~~c~~l~~  222 (281)
                      +|++|++++|+++++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.25  E-value=5.2e-06  Score=70.90  Aligned_cols=88  Identities=18%  Similarity=0.064  Sum_probs=40.1

Q ss_pred             ccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC
Q 023528          101 NLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS  178 (281)
Q Consensus       101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  178 (281)
                      .+..+|. +..+++|++|++++.+.+..++..  ..+++|+.|++++| .++.++...|.++++|+.|++++  +.+..+
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~   95 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF--NALESL   95 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS--SCCSCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC--Ccccee
Confidence            3444444 444444555555432334443321  33445555555542 33333333455555666666655  344444


Q ss_pred             CC---CCCCccEEeccC
Q 023528          179 PR---FPASLTQLGISD  192 (281)
Q Consensus       179 ~~---~~~~L~~L~l~~  192 (281)
                      |.   ...+|+.|++.+
T Consensus        96 ~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           96 SWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             CSTTTCSCCCCEEECCS
T ss_pred             CHHHcccCCceEEEeeC
Confidence            43   111256666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.25  E-value=4.8e-06  Score=71.12  Aligned_cols=104  Identities=23%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc-c
Q 023528           29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-N  107 (281)
Q Consensus        29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~  107 (281)
                      ..++.++...+..+|.++.+++ |++|+|+++..++.++.              ..+..+++|++|++++| .++.++ .
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~-L~~L~l~~~n~l~~~~~--------------~~~~~l~~L~~L~l~~N-~l~~~~~~   74 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAEN-LTELYIENQQHLQHLEL--------------RDLRGLGELRNLTIVKS-GLRFVAPD   74 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSC-CSEEECCSCSSCCEECG--------------GGSCSCCCCSEEECCSS-CCCEECTT
T ss_pred             CEEEcCCCCCCCccCCCCCCCC-eeEEEccCCCCCCCcCh--------------hHhccccCCCEEECCCC-ccceeCHH
Confidence            4567776535788888777888 99988876333443321              23445679999999996 455554 5


Q ss_pred             cCcCCCCccEEeecCCcCCcccCCCC-CCCCcCeEEecCCCCc
Q 023528          108 CIHNLTSLLHLEIRECRSLVSFPEDG-FPTNLQSLVVDDLKIS  149 (281)
Q Consensus       108 ~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~  149 (281)
                      .+..+++|++|++++ +.+..+|... ....|+.|++.+|...
T Consensus        75 ~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             HhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCcc
Confidence            678899999999988 4666776542 2223899999886543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=1.1e-05  Score=69.33  Aligned_cols=12  Identities=17%  Similarity=0.008  Sum_probs=6.6

Q ss_pred             CCCcEEecCCCc
Q 023528          230 KSLLRLGIDDCP  241 (281)
Q Consensus       230 ~~L~~L~l~~c~  241 (281)
                      ++|+.|++.+|.
T Consensus       307 ~~L~~L~L~~n~  318 (362)
T 2ra8_A          307 KHLKFINMKYNY  318 (362)
T ss_dssp             TTCSEEECCSBB
T ss_pred             CcceEEECCCCc
Confidence            455555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.81  E-value=1.2e-05  Score=69.18  Aligned_cols=164  Identities=19%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCc
Q 023528           45 NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR  124 (281)
Q Consensus        45 ~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~  124 (281)
                      ...+++ |+.|.+.+.. ...    ..++++. ...+......+|+|+.|.+++|..+. ++. + .+++|++|.+..|.
T Consensus       135 ~~~l~~-L~~L~l~~~~-~e~----~~is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~  204 (362)
T 2ra8_A          135 KEKFAH-FEGLFWGDID-FEE----QEISWIE-QVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGG  204 (362)
T ss_dssp             HHHHTT-CSEEEECCCC-TTT----CCGGGCB-CCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSB
T ss_pred             hhhcch-hhheeecCcc-hhh----ccccccc-ccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCC
Confidence            345778 9998886532 111    1111110 01122222346789999998874443 333 3 37889999987653


Q ss_pred             CCcccC--C--CCCCCCcCeEEecCCCC-------ccccchh-hhccCCCcceEEeecCCCCCccCCC------CCCCcc
Q 023528          125 SLVSFP--E--DGFPTNLQSLVVDDLKI-------SKPLFEW-GLDRFACLRELRIRGGCPDLVSSPR------FPASLT  186 (281)
Q Consensus       125 ~l~~l~--~--~~~~~~L~~L~l~~~~~-------~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~------~~~~L~  186 (281)
                       +..-.  .  ...+++|++|+++.+..       ...+... ....+++|++|++.+ |........      ..++|+
T Consensus       205 -l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~  282 (362)
T 2ra8_A          205 -LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD-AEEQNVVVEMFLESDILPQLE  282 (362)
T ss_dssp             -CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES-CTTHHHHHHHHHHCSSGGGCS
T ss_pred             -CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC-CCCchHHHHHHHhCccCCCCC
Confidence             22111  0  12568899998853211       1111110 113578999999987 543221111      345899


Q ss_pred             EEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCccc
Q 023528          187 QLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLKY  222 (281)
Q Consensus       187 ~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~  222 (281)
                      +|+++. +.++.     ++.....+++|+.|++++| .+++
T Consensus       283 ~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          283 TMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             EEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             EEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence            999987 56664     3311146789999999986 4543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.70  E-value=2.9e-06  Score=73.47  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=75.8

Q ss_pred             CCccEEEeccCcccccccccC-cCCCCccEEeecCCcCCcccCCC-------CCCCCcCeEEecCCCCccccc----hhh
Q 023528           89 TKLTRLTIWKCKNLKALPNCI-HNLTSLLHLEIRECRSLVSFPED-------GFPTNLQSLVVDDLKISKPLF----EWG  156 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L~l~~~~~~~~~~----~~~  156 (281)
                      ++|++|++++|..-..-...+ ..+++|++|++++| .++.....       ...++|++|++++|. +++..    ...
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            589999999874321111122 34567889999886 33321110       234688999998865 32211    123


Q ss_pred             hccCCCcceEEeecCCCCCccCC-----C---CCCCccEEeccCCCCCccc-----cccCCCCCCcCEEeccCCCCccc
Q 023528          157 LDRFACLRELRIRGGCPDLVSSP-----R---FPASLTQLGISDMPTLKCL-----SSVGENLTSLETLDLSNCPKLKY  222 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~-----~---~~~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~  222 (281)
                      +...++|++|++++ | .+++..     .   ..++|++|++++| .++..     .......++|++|++++| .++.
T Consensus       179 L~~~~~L~~L~Ls~-N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          179 LAGNTSVTHLSLLH-T-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             HHTCSSCCEEECTT-S-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             HhcCCCcCEEeCCC-C-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence            46678889999887 4 344321     1   3457888888884 56542     211135578888888885 4543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.51  E-value=5.5e-06  Score=71.69  Aligned_cols=104  Identities=18%  Similarity=0.098  Sum_probs=53.3

Q ss_pred             CCccEEEeccCccccc-----ccccC-cCCCCccEEeecCCcCCcc-----cCCC-CCCCCcCeEEecCCCCccccc---
Q 023528           89 TKLTRLTIWKCKNLKA-----LPNCI-HNLTSLLHLEIRECRSLVS-----FPED-GFPTNLQSLVVDDLKISKPLF---  153 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~-----lp~~~-~~l~~L~~L~l~~~~~l~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~---  153 (281)
                      ++|++|++++|. ++.     +...+ ...++|++|++++|. ++.     +... ...++|++|++++|. +++..   
T Consensus       126 ~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~  202 (372)
T 3un9_A          126 LRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL  202 (372)
T ss_dssp             HTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH
T ss_pred             HhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH
Confidence            367777777753 321     11112 235667777777752 322     1110 234567777777754 32211   


Q ss_pred             -hhhhccCCCcceEEeecCCCCCccCCC--------CCCCccEEeccCCCCCcc
Q 023528          154 -EWGLDRFACLRELRIRGGCPDLVSSPR--------FPASLTQLGISDMPTLKC  198 (281)
Q Consensus       154 -~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~L~~L~l~~c~~l~~  198 (281)
                       ...+...++|++|++++ | .+++...        ..++|++|++++| .++.
T Consensus       203 L~~~L~~~~~L~~L~Ls~-N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAY-N-GAGDTAALALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             HHHHGGGCSCCCEEECCS-S-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             HHHHHhcCCCcCeEECCC-C-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence             12345566777777776 3 3332211        2346777777773 4543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.49  E-value=0.0095  Score=51.49  Aligned_cols=193  Identities=14%  Similarity=0.156  Sum_probs=106.6

Q ss_pred             CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccC---------CCCCCCCCCccEE
Q 023528           26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF---------PEGGLPSTKLTRL   94 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l---------~~~~~~~~~L~~L   94 (281)
                      ++|+.+.+.+.  +..++.  +....+ |+.+.+...  ++.++. -...+|..++.+         ........+|+.+
T Consensus       162 ~~L~~i~l~~~--~~~I~~~~F~~c~~-L~~i~l~~~--~~~I~~-~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i  235 (394)
T 4fs7_A          162 ESLEYVSLPDS--METLHNGLFSGCGK-LKSIKLPRN--LKIIRD-YCFAECILLENMEFPNSLYYLGDFALSKTGVKNI  235 (394)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTT-CCBCCCCTT--CCEECT-TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred             CCCcEEecCCc--cceeccccccCCCC-ceEEEcCCC--ceEeCc-hhhccccccceeecCCCceEeehhhcccCCCceE
Confidence            56777766532  233332  445556 666666432  222221 112233333222         1222334567777


Q ss_pred             EeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecC
Q 023528           95 TIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGG  171 (281)
Q Consensus        95 ~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (281)
                      .+...  +..+. ..+..+..++.+.+...  ...+...  .....++.+.....    .++...+..+.+|+.+.+.. 
T Consensus       236 ~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~-  306 (394)
T 4fs7_A          236 IIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLD-  306 (394)
T ss_dssp             EECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECT-
T ss_pred             EECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccccccccccc-
Confidence            66542  23332 34566777777777642  3333332  34566666655432    23333567788888888865 


Q ss_pred             CCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCC
Q 023528          172 CPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDD  239 (281)
Q Consensus       172 ~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~  239 (281)
                        .++.++.    ...+|+.+++..  .++.++... .++.+|+.+.+..  .+..+...++  +.+|+.+++..
T Consensus       307 --~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          307 --SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             --TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             --ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence              2444443    456788888864  477777555 7888888888865  3666766544  57788887753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.32  E-value=0.038  Score=47.62  Aligned_cols=97  Identities=11%  Similarity=0.159  Sum_probs=57.9

Q ss_pred             CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcC
Q 023528          136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLE  210 (281)
Q Consensus       136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~  210 (281)
                      .+|+.+.+.+  ....+....+.++++|+.+.+..   .+..++.    ...+|+.+.+..  .++.+.... .++.+|+
T Consensus       265 ~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          265 AYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLE  337 (394)
T ss_dssp             SSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred             ccccEEeccc--ccceecCcccccccccccccCCC---cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCC
Confidence            4455555432  12233333455666666666653   3344443    345777877764  467776444 7778888


Q ss_pred             EEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528          211 TLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP  241 (281)
Q Consensus       211 ~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~  241 (281)
                      .+.+..  .++.+...++  +.+|+.+++.+..
T Consensus       338 ~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          338 RIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            888853  3566665444  6788888887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.10  E-value=0.048  Score=46.98  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             hhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--
Q 023528          156 GLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--  228 (281)
Q Consensus       156 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--  228 (281)
                      .|..+..|+.+.+..   ....+..    ...+|+.+.+.  +.++.++... .++.+|+.+.+..  .++.+...++  
T Consensus       260 aF~~c~~L~~i~lp~---~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~  332 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD---SVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAG  332 (394)
T ss_dssp             TTTTCSSCCEEECCT---TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred             eeeecccccEEeccc---ccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence            455666677666654   1122222    34567777775  3577777555 7788888888864  4666665444  


Q ss_pred             CCCCcEEecC
Q 023528          229 PKSLLRLGID  238 (281)
Q Consensus       229 ~~~L~~L~l~  238 (281)
                      +.+|+.+.+.
T Consensus       333 C~~L~~i~ip  342 (394)
T 4gt6_A          333 CEQLERIAIP  342 (394)
T ss_dssp             CTTCCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            5677777663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.90  E-value=0.0008  Score=55.12  Aligned_cols=78  Identities=19%  Similarity=0.169  Sum_probs=42.8

Q ss_pred             CCCccEEEeccCccccc---ccccCcCCCCccEEeecCCcCCcccCCCCCCC--CcCeEEecCCCCccccc------hhh
Q 023528           88 STKLTRLTIWKCKNLKA---LPNCIHNLTSLLHLEIRECRSLVSFPEDGFPT--NLQSLVVDDLKISKPLF------EWG  156 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~---lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~~------~~~  156 (281)
                      +++|+.|++++|. +..   +|..+..+++|+.|++++ +.+..+.....+.  +|++|++.+|+....++      ...
T Consensus       169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5677777777753 333   333445677777777776 3444332222222  67777777765443332      123


Q ss_pred             hccCCCcceEE
Q 023528          157 LDRFACLRELR  167 (281)
Q Consensus       157 ~~~l~~L~~L~  167 (281)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45666666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.85  E-value=0.074  Score=45.80  Aligned_cols=54  Identities=26%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecC
Q 023528          181 FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGID  238 (281)
Q Consensus       181 ~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~  238 (281)
                      ...+|+.+.+.+  .++.++... .++.+|+.+++..  .++.+...++  +.+|+.+.+.
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence            345778887764  477777554 7888899998863  4666665444  4567766653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.76  E-value=0.1  Score=44.55  Aligned_cols=21  Identities=14%  Similarity=0.287  Sum_probs=10.2

Q ss_pred             CCcccCCCCCcc-CcCceeeccC
Q 023528           14 SRTPFSSENELP-ATLEHLEVTH   35 (281)
Q Consensus        14 ~l~~~~~~~~~~-~~L~~L~l~~   35 (281)
                      +++.+ ...+|. .+|+.+.+..
T Consensus       101 ~l~~I-~~~aF~~~~L~~i~lp~  122 (379)
T 4h09_A          101 RVKKF-GDYVFQGTDLDDFEFPG  122 (379)
T ss_dssp             TCCEE-CTTTTTTCCCSEEECCT
T ss_pred             eeeEe-ccceeccCCcccccCCC
Confidence            34444 333333 4666666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.35  E-value=0.4  Score=40.75  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=15.5

Q ss_pred             CCccEEeccCCCCCccccccC-CCCCCcCEEecc
Q 023528          183 ASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLS  215 (281)
Q Consensus       183 ~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~  215 (281)
                      .+|+.+.+.+ +.++.++... .++.+|+.+.+.
T Consensus       286 ~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          286 SNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            3455555544 3444444333 455555555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.81  E-value=0.001  Score=51.36  Aligned_cols=14  Identities=21%  Similarity=0.337  Sum_probs=7.5

Q ss_pred             CCcCCcCcEEEecCC
Q 023528           46 GNLPRALKYLYVKDC   60 (281)
Q Consensus        46 ~~l~~~L~~L~l~~~   60 (281)
                      ...+. |++|++++|
T Consensus        33 ~~~~~-L~~L~L~~n   46 (185)
T 1io0_A           33 NNDPD-LEEVNLNNI   46 (185)
T ss_dssp             TTCTT-CCEEECTTC
T ss_pred             hcCCC-CCEEEecCC
Confidence            33445 666666555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.59  E-value=0.0081  Score=46.15  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             CCCCCcCEEec--cCCCCcccccC----CC--CCCCCcEEecCCCc
Q 023528          204 ENLTSLETLDL--SNCPKLKYFSK----QG--LPKSLLRLGIDDCP  241 (281)
Q Consensus       204 ~~l~~L~~L~l--~~c~~l~~i~~----~~--~~~~L~~L~l~~c~  241 (281)
                      ...++|++|++  ++ +.++....    ..  ..++|++|++++|.
T Consensus       118 ~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          118 QSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            45566777777  44 34443211    00  13567777777775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.34  E-value=0.014  Score=47.65  Aligned_cols=56  Identities=21%  Similarity=0.178  Sum_probs=25.9

Q ss_pred             cCCCcceEEeecCCCCCccCC---C---CCCCccEEeccCCCCCccccccCCCCC--CcCEEeccCCC
Q 023528          159 RFACLRELRIRGGCPDLVSSP---R---FPASLTQLGISDMPTLKCLSSVGENLT--SLETLDLSNCP  218 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~---~---~~~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~  218 (281)
                      ++++|+.|++++  +.+..++   .   ..++|+.|+|++ +.++.+. ....+.  +|++|++++++
T Consensus       168 ~l~~L~~L~Ls~--N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSN--NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTT--SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCC--CCCCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCc
Confidence            455566666665  3333322   1   234555555555 4444432 121122  56666666644

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.95  E-value=0.05  Score=39.12  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             CCCc--cCCC-CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528          173 PDLV--SSPR-FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP  218 (281)
Q Consensus       173 ~~~~--~~~~-~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~  218 (281)
                      ..++  .+|. .+.++++|+|++ |.++.++... ..+++|++|++.+++
T Consensus        18 ~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           18 RGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             SCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCccccCCCCCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            4455  6775 677888888888 6788887555 777888888888753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.41  E-value=0.42  Score=34.13  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528          134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG  170 (281)
Q Consensus       134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (281)
                      .+++|+.|++++ +.++.++...|..+++|+.|++++
T Consensus        29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence            445566666665 445555555566666666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 35/241 (14%), Positives = 60/241 (24%), Gaps = 19/241 (7%)

Query: 30  HLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPS- 88
           HL V  CS+L       +LP     L +++                  +    +G   + 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNN----------------KITEIKDGDFKNL 54

Query: 89  TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKI 148
             L  L +   K  K  P     L  L  L + + + L   PE   P  LQ L V + +I
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE-KMPKTLQELRVHENEI 112

Query: 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTS 208
           +K            +                     + +L    +      +       S
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 172

Query: 209 LETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIP 268
           L  L L      K  +      + L         +      +                + 
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 269 C 269
            
Sbjct: 233 K 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.59
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.39
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.06
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.02
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.94
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.93
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.8

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.68  E-value=3.8e-17  Score=136.85  Aligned_cols=236  Identities=14%  Similarity=0.064  Sum_probs=144.9

Q ss_pred             cceeecccCCC--CCcccCCCCCccCcCceeeccCCcCcc-cccc-CCCcCCcCcEEEecCCcchhccccc---------
Q 023528            3 QDISRSSSGST--SRTPFSSENELPATLEHLEVTHCSNLA-FLSW-NGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         3 ~l~~l~~~~~~--~l~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      ++.+|+++++.  ....+|+...-.++|++|++++|..+. .+|. ++.+++ |++|+++++...+..+..         
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~-L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-CSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccc-cchhhhccccccccccccccchhhhcc
Confidence            56777777653  222453333333688999998765555 6665 788888 999998887533322221         


Q ss_pred             eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCc-cEEeecCCcCCcccCCCCCCCCcCeEEecCCCC
Q 023528           70 IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSL-LHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKI  148 (281)
Q Consensus        70 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L-~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~  148 (281)
                      +++.++.....+|..+..+++++.++++++.....+|..+..+..+ +.+.+.++......+....-.....+++..+..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555555566666666777777777765555666666665554 556555532222222211112334566665444


Q ss_pred             ccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCcccccC
Q 023528          149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYFSK  225 (281)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i~~  225 (281)
                      ....+. .+..+++++.+++.. +.....++.  ..++++.|+++++ +++ .+|..++.+++|++|+++++.-.+.+|.
T Consensus       210 ~~~~~~-~~~~~~~l~~l~~~~-~~l~~~~~~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         210 EGDASV-LFGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EECCGG-GCCTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccc-ccccccccccccccc-ccccccccccccccccccccCccC-eecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            344432 466778888888887 543333333  4678899999984 554 7885558888999999998543336777


Q ss_pred             CCCCCCCcEEecCCCch
Q 023528          226 QGLPKSLLRLGIDDCPL  242 (281)
Q Consensus       226 ~~~~~~L~~L~l~~c~~  242 (281)
                      .+.+.+|+.+++.+++.
T Consensus       287 ~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             STTGGGSCGGGTCSSSE
T ss_pred             cccCCCCCHHHhCCCcc
Confidence            55567788777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.6e-15  Score=129.75  Aligned_cols=79  Identities=19%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCchHHHHHhhcCCCCCccccc
Q 023528          181 FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRY  260 (281)
Q Consensus       181 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  260 (281)
                      ..++++.|++++ +.++.++ ....+++|++|++++| .++.++..+.+++|++|++++|.. +..            ..
T Consensus       305 ~~~~l~~L~ls~-n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~l-~~l------------~~  368 (384)
T d2omza2         305 NLKNLTYLTLYF-NNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQI-SDL------------TP  368 (384)
T ss_dssp             GCTTCSEEECCS-SCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCC-CBC------------GG
T ss_pred             hhcccCeEECCC-CCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCcC-CCC------------hh
Confidence            455788888888 4677665 3567888999999886 677776544467899999988752 111            12


Q ss_pred             ccccccccEEEECCE
Q 023528          261 WPMITHIPCVIVNGR  275 (281)
Q Consensus       261 ~~~~~~l~~~~~~~~  275 (281)
                      +..+.++..+.++++
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             hccCCCCCEeeCCCC
Confidence            344667777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.2e-15  Score=120.86  Aligned_cols=178  Identities=21%  Similarity=0.122  Sum_probs=122.2

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      .+++++ |. .+++++++|+++++. +..++.  +..+++ |++|+++++. ++.+               +. ...+++
T Consensus        20 ~~L~~i-P~-~lp~~l~~L~Ls~N~-i~~l~~~~f~~l~~-L~~L~L~~N~-l~~l---------------~~-~~~l~~   78 (266)
T d1p9ag_          20 RNLTAL-PP-DLPKDTTILHLSENL-LYTFSLATLMPYTR-LTQLNLDRAE-LTKL---------------QV-DGTLPV   78 (266)
T ss_dssp             SCCSSC-CS-CCCTTCCEEECTTSC-CSEEEGGGGTTCTT-CCEEECTTSC-CCEE---------------EC-CSCCTT
T ss_pred             CCCCee-Cc-CcCcCCCEEECcCCc-CCCcCHHHhhcccc-cccccccccc-cccc---------------cc-cccccc
Confidence            457788 53 356789999999876 676654  778888 9999998864 3332               21 123668


Q ss_pred             ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      |++|++++| .+...+..+..+++|+.|+++++ ....++..  ..+.+++.+.+.++ .++.++...+..+++++.+++
T Consensus        79 L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          79 LGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             CCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccc-ccccccccccccccccccccccc-ccceeecccccccccccccccccc-ccceeccccccccccchhccc
Confidence            999999985 45666777788889999998875 33344332  45678888888874 455555556667778888888


Q ss_pred             ecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528          169 RGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       169 ~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  217 (281)
                      ++  +.++.++.    ..++|++|++++ +.++.+|..+..+++|+.|+++++
T Consensus       156 ~~--N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         156 AN--NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TT--SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cc--ccccccCccccccccccceeeccc-CCCcccChhHCCCCCCCEEEecCC
Confidence            77  44555543    356777777777 467777755566677777777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.1e-14  Score=118.32  Aligned_cols=214  Identities=15%  Similarity=0.200  Sum_probs=140.8

Q ss_pred             CCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCC
Q 023528           14 SRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFP   82 (281)
Q Consensus        14 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~   82 (281)
                      +++++ |. .+++++++|+++++. ++.++.  +..+++ |++|+++++....-.|..         ++++++ .++.+|
T Consensus        21 ~L~~l-P~-~l~~~l~~L~Ls~N~-i~~l~~~~f~~l~~-L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~   95 (305)
T d1xkua_          21 GLEKV-PK-DLPPDTALLDLQNNK-ITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELP   95 (305)
T ss_dssp             CCCSC-CC-SCCTTCCEEECCSSC-CCCBCTTTTTTCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCC
T ss_pred             CCCcc-CC-CCCCCCCEEECcCCc-CCCcChhHhhcccc-ccccccccccccccchhhhhCCCccCEecccCC-ccCcCc
Confidence            46677 44 345678888888765 666653  667777 888888776533222221         555554 345555


Q ss_pred             CCCCCCCCccEEEeccCc------------------------cc--ccccccCcCCCCccEEeecCCcCCcccCCCCCCC
Q 023528           83 EGGLPSTKLTRLTIWKCK------------------------NL--KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPT  136 (281)
Q Consensus        83 ~~~~~~~~L~~L~l~~c~------------------------~l--~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  136 (281)
                      ....  +.++.|.+.++.                        ..  ...+..+..+++|+.+++.++ .+..++. ..++
T Consensus        96 ~~~~--~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~-~~~~  171 (305)
T d1xkua_          96 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-GLPP  171 (305)
T ss_dssp             SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS-SCCT
T ss_pred             cchh--hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCc-ccCC
Confidence            4332  245555544421                        11  111224556778888888874 4555543 3568


Q ss_pred             CcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      +|+.|++.++...... ...+.+++.++.|++++  +.+..++.    ..++|++|++++ +.++.+|..+..+++|++|
T Consensus       172 ~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~--n~l~~~~~~~~~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         172 SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSF--NSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCS--SCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEE
T ss_pred             ccCEEECCCCcCCCCC-hhHhhcccccccccccc--ccccccccccccccccceeeeccc-ccccccccccccccCCCEE
Confidence            9999999886554333 34678889999999988  45665543    456899999999 4788998555889999999


Q ss_pred             eccCCCCcccccCCCC--------CCCCcEEecCCCc
Q 023528          213 DLSNCPKLKYFSKQGL--------PKSLLRLGIDDCP  241 (281)
Q Consensus       213 ~l~~c~~l~~i~~~~~--------~~~L~~L~l~~c~  241 (281)
                      +++++ +++.++...+        ..+|+.|++.+++
T Consensus       248 ~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         248 YLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            99994 6888765221        4678999999887

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-14  Score=116.67  Aligned_cols=202  Identities=18%  Similarity=0.211  Sum_probs=132.3

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      .+++++ |. .+++++++|+++++. ++.+|.  +..+++ |++|+++++. +..++.              .....++.
T Consensus        21 ~~L~~i-P~-~ip~~~~~L~Ls~N~-i~~i~~~~f~~l~~-L~~L~ls~n~-l~~i~~--------------~~~~~~~~   81 (284)
T d1ozna_          21 QGLQAV-PV-GIPAASQRIFLHGNR-ISHVPAASFRACRN-LTILWLHSNV-LARIDA--------------AAFTGLAL   81 (284)
T ss_dssp             SCCSSC-CT-TCCTTCSEEECTTSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEECT--------------TTTTTCTT
T ss_pred             CCCCcc-CC-CCCCCCCEEECcCCc-CCCCCHHHhhcccc-cccccccccc-cccccc--------------cccccccc
Confidence            348888 64 466799999999976 788876  788999 9999998864 222211              11222446


Q ss_pred             ccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           91 LTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        91 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      ++.+.+..+..+..+ +..+..+++|++|+++++. ...++..  ..+.+|+.+++.+ +.++.++...+..+++|++|+
T Consensus        82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcc-ccccccChhHhccccchhhcc
Confidence            667766655566555 3456777788888887743 3333322  4567778888877 445566555677777888888


Q ss_pred             eecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCC
Q 023528          168 IRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDD  239 (281)
Q Consensus       168 l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~  239 (281)
                      +++  +.+..++.    ..++|+.++++++ .+..++... ..+++|++|+++++ .+..++..  +-.++|++|++++
T Consensus       160 l~~--N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         160 LHG--NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCS--SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccc--Ccccccchhhhccccccchhhhhhc-cccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecC
Confidence            877  35555543    4567888888874 555553344 77788888888874 45555542  2256788888776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.4e-14  Score=114.67  Aligned_cols=189  Identities=23%  Similarity=0.213  Sum_probs=138.9

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP  106 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp  106 (281)
                      .+.+++.++.. ++.+|.  .+|.++++|+|+++. ++.+|.              ..+..+++|++|++++| .++.+|
T Consensus        11 ~~~~v~C~~~~-L~~iP~--~lp~~l~~L~Ls~N~-i~~l~~--------------~~f~~l~~L~~L~L~~N-~l~~l~   71 (266)
T d1p9ag_          11 SHLEVNCDKRN-LTALPP--DLPKDTTILHLSENL-LYTFSL--------------ATLMPYTRLTQLNLDRA-ELTKLQ   71 (266)
T ss_dssp             TCCEEECTTSC-CSSCCS--CCCTTCCEEECTTSC-CSEEEG--------------GGGTTCTTCCEEECTTS-CCCEEE
T ss_pred             CCeEEEccCCC-CCeeCc--CcCcCCCEEECcCCc-CCCcCH--------------HHhhccccccccccccc-cccccc
Confidence            44445555433 667774  355459999998854 333221              12345679999999996 677776


Q ss_pred             ccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----C
Q 023528          107 NCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----F  181 (281)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~  181 (281)
                       .+..+++|++|+++++ .+...+.. ..+++|+.++++++. ...++...+..+.+++.|++++  +.+..++.    .
T Consensus        72 -~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~--n~l~~l~~~~~~~  146 (266)
T d1p9ag_          72 -VDGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTP  146 (266)
T ss_dssp             -CCSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTTTT
T ss_pred             -cccccccccccccccc-cccccccccccccccccccccccc-cceeeccccccccccccccccc--cccceeccccccc
Confidence             4578999999999985 45544443 678899999999854 4444444678889999999998  56666654    4


Q ss_pred             CCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC-CCCCcEEecCCCc
Q 023528          182 PASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL-PKSLLRLGIDDCP  241 (281)
Q Consensus       182 ~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~-~~~L~~L~l~~c~  241 (281)
                      .++++.+++++ +.++.++... ..+++|++|+++++ +++.+|.... .++|+.|++.+.|
T Consensus       147 l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         147 TPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccchhccccc-ccccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            66899999999 6788887665 88999999999995 6889987544 6789999998744

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=7e-14  Score=119.40  Aligned_cols=143  Identities=22%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      +++++.++++++. ++.++ .....++|+++++.++ .++.++....+++|+.+++.+|. ++.++  .+..+++|++|+
T Consensus       196 l~~~~~l~l~~n~-i~~~~-~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSC-CCCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCc-cCCCC-cccccCCCCEEECCCC-CCCCcchhhcccccchhccccCc-cCCCC--cccccccCCEee
Confidence            5566677666643 33332 2345567777777764 44455444556777777777753 44443  366677777777


Q ss_pred             eecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          168 IRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       168 l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                      +++  ..+..++.  ....++.+.+.. +.+..++ ....++++++++++++ ++++++....+++|++|++.+|.
T Consensus       270 l~~--~~l~~~~~~~~~~~l~~l~~~~-n~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         270 LGA--NQISNISPLAGLTALTNLELNE-NQLEDIS-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             CCS--SCCCCCGGGTTCTTCSEEECCS-SCCSCCG-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC
T ss_pred             ccC--cccCCCCccccccccccccccc-ccccccc-ccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCC
Confidence            776  33444433  445677777777 4555554 3467788999999985 67777654457899999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.3e-13  Score=109.61  Aligned_cols=184  Identities=20%  Similarity=0.182  Sum_probs=124.7

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      .+|+.|++.+|. ++.++.+..+++ |++|+++++. +..               ++. ...+++|+++++++| ..+.+
T Consensus        41 ~~L~~L~l~~~~-i~~l~~l~~l~~-L~~L~ls~n~-i~~---------------~~~-l~~l~~l~~l~~~~n-~~~~i  100 (227)
T d1h6ua2          41 DGITTLSAFGTG-VTTIEGVQYLNN-LIGLELKDNQ-ITD---------------LAP-LKNLTKITELELSGN-PLKNV  100 (227)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CCC---------------CGG-GTTCCSCCEEECCSC-CCSCC
T ss_pred             CCcCEEECCCCC-CCcchhHhcCCC-CcEeecCCce-eec---------------ccc-ccccccccccccccc-ccccc
Confidence            588888888876 777777788888 8888888764 211               111 233568888888885 34555


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      + ++..++.|+.+.++++. ...+......+.++.+.+.++.... ..  .+...++|++|++++ + .+...+.  ..+
T Consensus       101 ~-~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~-n-~~~~~~~l~~l~  173 (227)
T d1h6ua2         101 S-AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGN-A-QVSDLTPLANLS  173 (227)
T ss_dssp             G-GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCS-S-CCCCCGGGTTCT
T ss_pred             c-ccccccccccccccccc-ccccchhccccchhhhhchhhhhch-hh--hhccccccccccccc-c-ccccchhhcccc
Confidence            3 56778888888887753 3333333456677788877644332 22  356778888888887 4 3333332  456


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCC
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDD  239 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~  239 (281)
                      +|+.|+++++ .++.++ ..+++++|++|++++| ++++++....+++|++|++++
T Consensus       174 ~L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cceecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            8888888884 677776 4577888999999886 677777644567888888753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=2.1e-12  Score=107.03  Aligned_cols=200  Identities=19%  Similarity=0.199  Sum_probs=97.4

Q ss_pred             cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccCCCCCCCCCCccEEEe
Q 023528           27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESFPEGGLPSTKLTRLTI   96 (281)
Q Consensus        27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l~~~~~~~~~L~~L~l   96 (281)
                      ..+.++-++. +++.+|.  .+|.++++|+++++. ++.+|..          ++++++.....-+..+..+++|++|++
T Consensus        11 ~~~~~~C~~~-~L~~lP~--~l~~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDL-GLEKVPK--DLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTS-CCCSCCC--SCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCC-CCCccCC--CCCCCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4555555432 3777775  344559999999864 5544432          444444332222333444555555555


Q ss_pred             ccCcccccccccCcCCCCccEEeecCCcCCcccCCC----------------------------CCCCCcCeEEecCCCC
Q 023528           97 WKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED----------------------------GFPTNLQSLVVDDLKI  148 (281)
Q Consensus        97 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~----------------------------~~~~~L~~L~l~~~~~  148 (281)
                      ++| .++.+|..+  ...++.+.+.+. .+..++..                            ..+++|+.+++.+|. 
T Consensus        87 ~~n-~l~~l~~~~--~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-  161 (305)
T d1xkua_          87 SKN-QLKELPEKM--PKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-  161 (305)
T ss_dssp             CSS-CCSBCCSSC--CTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred             cCC-ccCcCccch--hhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-
Confidence            553 344443322  123333333321 11111000                            112344444444422 


Q ss_pred             ccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCccccc
Q 023528          149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFS  224 (281)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~  224 (281)
                      +..++.   ..+++|++|++++ +......+.   ..+.++.|++++ +.+..++..+ .++++|++|++++| .++.+|
T Consensus       162 l~~l~~---~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~l~~L~~s~-n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp  235 (305)
T d1xkua_         162 ITTIPQ---GLPPSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKVP  235 (305)
T ss_dssp             CCSCCS---SCCTTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred             ccccCc---ccCCccCEEECCC-CcCCCCChhHhhcccccccccccc-ccccccccccccccccceeeecccc-cccccc
Confidence            222221   1234455555554 222222111   334566666666 3566665444 66777888888775 566676


Q ss_pred             CC-CCCCCCcEEecCCCc
Q 023528          225 KQ-GLPKSLLRLGIDDCP  241 (281)
Q Consensus       225 ~~-~~~~~L~~L~l~~c~  241 (281)
                      .. ..+++|++|+++++.
T Consensus       236 ~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TTTTTCSSCCEEECCSSC
T ss_pred             cccccccCCCEEECCCCc
Confidence            42 225678888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.2e-13  Score=108.51  Aligned_cols=205  Identities=17%  Similarity=0.136  Sum_probs=146.1

Q ss_pred             ccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC-CCCCCCCccEEEeccCcccccc-cccCcCCCCcc
Q 023528           39 LAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKAL-PNCIHNLTSLL  116 (281)
Q Consensus        39 l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~  116 (281)
                      ++.+|.  .+|.++++|+|+++.                ++.++. .+..+++|++|+++++. +..+ +..+..+..++
T Consensus        23 L~~iP~--~ip~~~~~L~Ls~N~----------------i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~   83 (284)
T d1ozna_          23 LQAVPV--GIPAASQRIFLHGNR----------------ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLE   83 (284)
T ss_dssp             CSSCCT--TCCTTCSEEECTTSC----------------CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCccCC--CCCCCCCEEECcCCc----------------CCCCCHHHhhcccccccccccccc-cccccccccccccccc
Confidence            667764  356669999998854                333443 34457799999999954 4444 35567788999


Q ss_pred             EEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEec
Q 023528          117 HLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGI  190 (281)
Q Consensus       117 ~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l  190 (281)
                      ++.+.....+..++..  ..+++|++|++++|.. ..+....+...++|+.+++++  +.++.++.    ..++|+.|++
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~--N~l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQD--NALQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhhcc--ccccccChhHhccccchhhccc
Confidence            9988776777777644  5678999999998654 444444677889999999998  66777764    4568999999


Q ss_pred             cCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccc
Q 023528          191 SDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHI  267 (281)
Q Consensus       191 ~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l  267 (281)
                      .+ +.++.++... ..+++|++++++++ ++..++...  .+++|++|+++++..-.....           .+..+..+
T Consensus       161 ~~-N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~-----------~~~~~~~L  227 (284)
T d1ozna_         161 HG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-----------ALAPLRAL  227 (284)
T ss_dssp             CS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-----------HHTTCTTC
T ss_pred             cc-Ccccccchhhhccccccchhhhhhc-cccccChhHhhhhhhccccccccccccccccc-----------cccccccc
Confidence            99 5788887666 88999999999995 555664432  368999999998774221111           12335567


Q ss_pred             cEEEECCEEee
Q 023528          268 PCVIVNGRFVF  278 (281)
Q Consensus       268 ~~~~~~~~~~~  278 (281)
                      ..+.++|+.++
T Consensus       228 ~~L~l~~N~l~  238 (284)
T d1ozna_         228 QYLRLNDNPWV  238 (284)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEecCCCCC
Confidence            77777776554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4e-13  Score=107.64  Aligned_cols=202  Identities=18%  Similarity=0.182  Sum_probs=136.6

Q ss_pred             CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528           13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK   90 (281)
Q Consensus        13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~   90 (281)
                      .+++.+ |. .+++++++|+++++. ++.+|.  +..+++ |++|+++++.....++.              ..+..+++
T Consensus        18 ~~l~~i-P~-~l~~~l~~L~Ls~n~-i~~l~~~~f~~l~~-L~~L~ls~n~~~~~i~~--------------~~f~~l~~   79 (242)
T d1xwdc1          18 SKVTEI-PS-DLPRNAIELRFVLTK-LRVIQKGAFSGFGD-LEKIEISQNDVLEVIEA--------------DVFSNLPK   79 (242)
T ss_dssp             CSCSSC-CS-CSCSCCSEEEEESCC-CCEECTTTTTTCTT-CCEEEEESCTTCCEECS--------------SSEESCTT
T ss_pred             CCCCCc-CC-CCCCCCCEEECcCCc-CCccChhHhhccch-hhhhhhccccccceeec--------------cccccccc
Confidence            457888 54 455699999999876 777765  778999 99999988753333221              11223568


Q ss_pred             ccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEe--cCCCCccccchhhhccCC-CcceE
Q 023528           91 LTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVV--DDLKISKPLFEWGLDRFA-CLREL  166 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~l~-~L~~L  166 (281)
                      ++++.+..+..+..++ ..+..+++|+++++.++ .+...+....+.+++.+..  .++..+..++...+..++ .++.+
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L  158 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  158 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             cccccccccccccccccccccccccccccccchh-hhcccccccccccccccccccccccccccccccccccccccceee
Confidence            8888887766666554 45688999999999884 5556655555555555543  233455555544555554 67788


Q ss_pred             EeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCCCCCCcEEec
Q 023528          167 RIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGI  237 (281)
Q Consensus       167 ~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l  237 (281)
                      ++.+  +.+..++.   ...+++.+....++.++.+|... .++++|++|+++++ .++.+|..++ .++..|..
T Consensus       159 ~l~~--n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~  229 (242)
T d1xwdc1         159 WLNK--NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGL-ENLKKLRA  229 (242)
T ss_dssp             ECCS--SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSC-TTCCEEES
T ss_pred             eccc--ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHH-cCCccccc
Confidence            8876  55666654   33466667665667899998655 88999999999984 5888877443 45555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=3.9e-13  Score=105.61  Aligned_cols=140  Identities=20%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      +++|++|++++| .++.++ .+..+++|++|+++++ .++.++....+++|+.+++.+|.. ..++  .+.++++++.++
T Consensus        67 l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~~~-~~~~--~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNGI-SDIN--GLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSCC-CCCG--GGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCc-cccCcc-ccccCccccccccccc-cccccccccccccccccccccccc-cccc--cccccccccccc
Confidence            456666666664 344443 3456666666666653 445555445556666666666433 2333  355666677777


Q ss_pred             eecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecC
Q 023528          168 IRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID  238 (281)
Q Consensus       168 l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~  238 (281)
                      +++  +.+...+.  ..++|+.+++++ +.+..++ ..+.+++|++|++++| ++++++....+++|++|+++
T Consensus       141 ~~~--n~l~~~~~~~~l~~L~~l~l~~-n~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         141 LGN--NKITDITVLSRLTKLDTLSLED-NQISDIV-PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CCS--SCCCCCGGGGGCTTCSEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             ccc--cccccccccccccccccccccc-ccccccc-cccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            665  33333332  345677777777 3566665 3467778888888875 56777654445778887775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=3.6e-14  Score=118.37  Aligned_cols=217  Identities=17%  Similarity=0.059  Sum_probs=155.2

Q ss_pred             CccceeecccCCCCCc-ccCCCCCccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------
Q 023528            1 MKQDISRSSSGSTSRT-PFSSENELPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------   69 (281)
Q Consensus         1 ~~~l~~l~~~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------   69 (281)
                      ++.|+.|+++++.++. .+|+...-.++|++|+++++......+. +..++. |+++++.++.....+|..         
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~-L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccccccccccccchhhhccccccccccccccchhh-hcccccccccccccCchhhccCcccce
Confidence            4678899998876666 6743333337999999999873333333 667888 999999998766555544         


Q ss_pred             eeecCCCCCccCCCCCCCCCCc-cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCC
Q 023528           70 IWIFGCPNLESFPEGGLPSTKL-TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLK  147 (281)
Q Consensus        70 L~l~~~~~l~~l~~~~~~~~~L-~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~  147 (281)
                      ++++++.....+|.....+.++ +.+.++++......|..+..+..+ .+++.++.....++.. ...++++.+++.++.
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            7777776555777766666665 788888865545556666665444 6888775554555543 567899999998865


Q ss_pred             CccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCcccc
Q 023528          148 ISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYF  223 (281)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i  223 (281)
                      .....+  .+..+++|+.|++++ +.-...+|.   ..++|++|+++++ .++ .+| .++.+++|+.+++.+++.+...
T Consensus       233 l~~~~~--~~~~~~~L~~L~Ls~-N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         233 LAFDLG--KVGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECCBGG--GCCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSSSEEEST
T ss_pred             cccccc--ccccccccccccCcc-CeecccCChHHhCCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCCccccCC
Confidence            544444  578889999999998 544447776   4578999999994 565 888 6678899999999998766654


Q ss_pred             c
Q 023528          224 S  224 (281)
Q Consensus       224 ~  224 (281)
                      |
T Consensus       308 p  308 (313)
T d1ogqa_         308 P  308 (313)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=5.7e-13  Score=105.84  Aligned_cols=184  Identities=16%  Similarity=0.130  Sum_probs=135.6

Q ss_pred             ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528            2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF   81 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l   81 (281)
                      +.++.|++.++. ++.+++ ....++|++|+++++. +..++.+..+++ |++++++++. ++.            +.. 
T Consensus        41 ~~L~~L~l~~~~-i~~l~~-l~~l~~L~~L~ls~n~-i~~~~~l~~l~~-l~~l~~~~n~-~~~------------i~~-  102 (227)
T d1h6ua2          41 DGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQ-ITDLAPLKNLTK-ITELELSGNP-LKN------------VSA-  102 (227)
T ss_dssp             HTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCCS-CCEEECCSCC-CSC------------CGG-
T ss_pred             CCcCEEECCCCC-CCcchh-HhcCCCCcEeecCCce-eecccccccccc-cccccccccc-ccc------------ccc-
Confidence            567888999864 777733 3344699999999986 777777889999 9999998864 122            111 


Q ss_pred             CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCC
Q 023528           82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA  161 (281)
Q Consensus        82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~  161 (281)
                         ...+++|+++.+++|.... + ..+...+.++.+.+.++ .+.........++|+.+.+.+|. +....  .+.+++
T Consensus       103 ---l~~l~~L~~l~l~~~~~~~-~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~l~~l~  173 (227)
T d1h6ua2         103 ---IAGLQSIKTLDLTSTQITD-V-TPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLT--PLANLS  173 (227)
T ss_dssp             ---GTTCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCG--GGTTCT
T ss_pred             ---ccccccccccccccccccc-c-chhccccchhhhhchhh-hhchhhhhccccccccccccccc-cccch--hhcccc
Confidence               2346799999999875433 2 34567788888988775 33333334567899999998854 33333  478899


Q ss_pred             CcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          162 CLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      +|+.|++++ + .+++++.  ..++|++|++++| .++.++ ..+++++|++|++++
T Consensus       174 ~L~~L~Ls~-n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADD-N-KISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCS-S-CCCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred             cceecccCC-C-ccCCChhhcCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence            999999998 4 6677765  4579999999995 788887 468899999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1.5e-12  Score=101.23  Aligned_cols=161  Identities=23%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             CCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcC
Q 023528           46 GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRS  125 (281)
Q Consensus        46 ~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~  125 (281)
                      ..+++ +++|+++++. +..               +. .+..+++|++|++++| .++.++ ++..+++|++|+++++ .
T Consensus        37 ~~l~~-l~~L~l~~~~-i~~---------------l~-~l~~l~nL~~L~Ls~N-~l~~~~-~l~~l~~L~~L~l~~n-~   95 (199)
T d2omxa2          37 TDLDQ-VTTLQADRLG-IKS---------------ID-GVEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNN-Q   95 (199)
T ss_dssp             HHHTT-CCEEECTTSC-CCC---------------CT-TGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-C
T ss_pred             HHhcC-CCEEECCCCC-CCC---------------cc-ccccCCCcCcCccccc-cccCcc-cccCCccccccccccc-c
Confidence            44666 7777777754 111               11 1223567888888875 455554 4777788888888774 4


Q ss_pred             CcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccC
Q 023528          126 LVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVG  203 (281)
Q Consensus       126 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~  203 (281)
                      ...++....+++|+.++++++.... ..  .+..+++|+.|++++  +.+..++.  ..++++.|++.+ +.++.++ ..
T Consensus        96 ~~~~~~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~--n~l~~~~~l~~~~~L~~L~l~~-n~l~~l~-~l  168 (199)
T d2omxa2          96 IADITPLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSS--NTISDISALSGLTSLQQLNFSS-NQVTDLK-PL  168 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCS--SCCCCCGGGTTCTTCSEEECCS-SCCCCCG-GG
T ss_pred             ccccccccccccccccccccccccc-cc--ccchhhhhHHhhhhh--hhhccccccccccccccccccc-ccccCCc-cc
Confidence            4455545667788888887654433 22  366778888888887  34555543  566888888888 4677776 45


Q ss_pred             CCCCCcCEEeccCCCCcccccCCCCCCCCcEE
Q 023528          204 ENLTSLETLDLSNCPKLKYFSKQGLPKSLLRL  235 (281)
Q Consensus       204 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L  235 (281)
                      +++++|++|++++| ++++++..+.+++|++|
T Consensus       169 ~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            78889999999986 57777653345666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=2e-12  Score=100.56  Aligned_cols=158  Identities=19%  Similarity=0.184  Sum_probs=105.5

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      +++++|+++++. +..++.+..+++ |++|+++++. +..               ++. +..+++|++|++++|. ...+
T Consensus        40 ~~l~~L~l~~~~-i~~l~~l~~l~n-L~~L~Ls~N~-l~~---------------~~~-l~~l~~L~~L~l~~n~-~~~~   99 (199)
T d2omxa2          40 DQVTTLQADRLG-IKSIDGVEYLNN-LTQINFSNNQ-LTD---------------ITP-LKNLTKLVDILMNNNQ-IADI   99 (199)
T ss_dssp             TTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CCC---------------CGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred             cCCCEEECCCCC-CCCccccccCCC-cCcCcccccc-ccC---------------ccc-ccCCcccccccccccc-cccc
Confidence            478888888776 777777888888 8888887753 222               211 3345688888888854 4444


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      + ++..++.|+.++++++.. ...+....+++|+.+++++|. +..++  .+..+++|+.|++.+  +.+++++.  ..+
T Consensus       100 ~-~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~--~l~~~~~L~~L~l~~--n~l~~l~~l~~l~  172 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNT-ISDIS--ALSGLTSLQQLNFSS--NQVTDLKPLANLT  172 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCS--SCCCCCGGGTTCT
T ss_pred             c-cccccccccccccccccc-ccccccchhhhhHHhhhhhhh-hcccc--ccccccccccccccc--ccccCCccccCCC
Confidence            3 467788888888877533 333334567788888887753 44444  467778888888887  35555543  456


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEE
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETL  212 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  212 (281)
                      +|++|+++++ .++.++ ..+.+++|++|
T Consensus       173 ~L~~L~ls~N-~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         173 TLERLDISSN-KVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             TCCEEECCSS-CCCCCG-GGGGCTTCSEE
T ss_pred             CCCEEECCCC-CCCCCc-cccCCCCCCcC
Confidence            8888888884 677776 44666777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.5e-14  Score=115.75  Aligned_cols=175  Identities=13%  Similarity=0.135  Sum_probs=87.8

Q ss_pred             CcCceeeccCCcCcc-cccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc
Q 023528           26 ATLEHLEVTHCSNLA-FLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK  103 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~-~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  103 (281)
                      .+|++|++++|..-. .+.. +..+++ |++|++++|..-...           +..    +..+++|++|++++|..++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~-L~~L~L~~~~l~~~~-----------~~~----l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSK-LQNLSLEGLRLSDPI-----------VNT----LAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCC-CSEEECTTCBCCHHH-----------HHH----HTTCTTCSEEECTTCBSCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCC-cccccccccCCCcHH-----------HHH----HhcCCCCcCcccccccccc
Confidence            467777777664111 1221 455666 777777666411110           011    1124567777777776654


Q ss_pred             cc--cccCcCCCCccEEeecCCcCCcccC--C--CCCCCCcCeEEecCCCC-cccc-chhhhccCCCcceEEeecCCCCC
Q 023528          104 AL--PNCIHNLTSLLHLEIRECRSLVSFP--E--DGFPTNLQSLVVDDLKI-SKPL-FEWGLDRFACLRELRIRGGCPDL  175 (281)
Q Consensus       104 ~l--p~~~~~l~~L~~L~l~~~~~l~~l~--~--~~~~~~L~~L~l~~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~  175 (281)
                      ..  ..-...+++|++|++++|..++.-.  .  ...+++|+.|++++|.. +++. ......++++|++|++++ |..+
T Consensus       110 d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~-~~~i  188 (284)
T d2astb2         110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD-SVML  188 (284)
T ss_dssp             HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT-CTTC
T ss_pred             ccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc-ccCC
Confidence            21  1112456677777777765543211  0  02345677777766532 2221 111234566677777766 5554


Q ss_pred             ccCC--C--CCCCccEEeccCCCCCccccc-cCCCCCCcCEEeccCC
Q 023528          176 VSSP--R--FPASLTQLGISDMPTLKCLSS-VGENLTSLETLDLSNC  217 (281)
Q Consensus       176 ~~~~--~--~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  217 (281)
                      ++-.  .  ..++|++|++++|+.++.-.. ..+.+++|++|++++|
T Consensus       189 td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3211  1  334666666666655543211 1245566666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=3.4e-12  Score=100.14  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=123.0

Q ss_pred             CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528           26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL  105 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l  105 (281)
                      .+|++|++++|. +..++.+..+++ |++|+++++. +.               .++. ...+++|++|++++| .++.+
T Consensus        46 ~~L~~L~l~~~~-i~~l~~l~~l~~-L~~L~L~~n~-i~---------------~l~~-~~~l~~L~~L~l~~n-~i~~l  105 (210)
T d1h6ta2          46 NSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNK-LT---------------DIKP-LANLKNLGWLFLDEN-KVKDL  105 (210)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CC---------------CCGG-GTTCTTCCEEECCSS-CCCCG
T ss_pred             cCccEEECcCCC-CCCchhHhhCCC-CCEEeCCCcc-cc---------------Cccc-cccCccccccccccc-ccccc
Confidence            488999999876 778888888999 9999998864 22               2221 234679999999986 56667


Q ss_pred             cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528          106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA  183 (281)
Q Consensus       106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~  183 (281)
                      | .+..+++|+.+++.++ ....++....+++++.+++.++. ++...  .+..+++|+++++++  +.+.+++.  ..+
T Consensus       106 ~-~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~l~~l~~~~n~-l~~~~--~~~~l~~L~~l~l~~--n~l~~i~~l~~l~  178 (210)
T d1h6ta2         106 S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLED--NQISDIVPLAGLT  178 (210)
T ss_dssp             G-GGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCS--SCCCCCGGGTTCT
T ss_pred             c-cccccccccccccccc-ccccccccccccccccccccccc-ccccc--ccccccccccccccc--ccccccccccCCC
Confidence            5 5788999999999885 34455555677899999998854 44444  467789999999998  45566654  567


Q ss_pred             CccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528          184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSN  216 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  216 (281)
                      +|++|++++ +.++.++ ...++++|++|++++
T Consensus       179 ~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         179 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCEEECCC-CCCCCCh-hhcCCCCCCEEEccC
Confidence            899999999 4788887 568889999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.39  E-value=2.6e-11  Score=101.60  Aligned_cols=220  Identities=24%  Similarity=0.216  Sum_probs=126.4

Q ss_pred             cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCc--chhccccc---eeecCCCC
Q 023528            3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCS--KLESLAER---IWIFGCPN   77 (281)
Q Consensus         3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~--~l~~~p~~---L~l~~~~~   77 (281)
                      ++..|+++++ +++.+ |.  .+++|++|+++++ .++.+|..  +.+ |++|++.++.  .+..+|..   |+++++ .
T Consensus        39 ~l~~LdLs~~-~L~~l-p~--~~~~L~~L~Ls~N-~l~~lp~~--~~~-L~~L~l~~n~l~~l~~lp~~L~~L~L~~n-~  109 (353)
T d1jl5a_          39 QAHELELNNL-GLSSL-PE--LPPHLESLVASCN-SLTELPEL--PQS-LKSLLVDNNNLKALSDLPPLLEYLGVSNN-Q  109 (353)
T ss_dssp             TCSEEECTTS-CCSCC-CS--CCTTCSEEECCSS-CCSSCCCC--CTT-CCEEECCSSCCSCCCSCCTTCCEEECCSS-C
T ss_pred             CCCEEEeCCC-CCCCC-CC--CCCCCCEEECCCC-CCcccccc--hhh-hhhhhhhhcccchhhhhcccccccccccc-c
Confidence            5778999875 58889 53  4569999999966 48888752  445 9999998864  23444443   777775 4


Q ss_pred             CccCCCCCCCCCCccEEEeccCccccccc-------------------ccCcCCCCccEEeecCCcCC------------
Q 023528           78 LESFPEGGLPSTKLTRLTIWKCKNLKALP-------------------NCIHNLTSLLHLEIRECRSL------------  126 (281)
Q Consensus        78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-------------------~~~~~l~~L~~L~l~~~~~l------------  126 (281)
                      +..+|. ...+++|+.|+++++.. ...+                   ..+..++.++.+.+.++...            
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l  187 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI  187 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cccccc-hhhhccceeeccccccc-cccccccccccchhhccccccccccccccccceeccccccccccccccccccccc
Confidence            667775 35578899998887542 2111                   12344556666665542111            


Q ss_pred             -------cccCCCCCCCCcCeEEecCCCCccccchhh--h--------------ccCCCcceEEeecC-C----------
Q 023528          127 -------VSFPEDGFPTNLQSLVVDDLKISKPLFEWG--L--------------DRFACLRELRIRGG-C----------  172 (281)
Q Consensus       127 -------~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~--~--------------~~l~~L~~L~l~~~-~----------  172 (281)
                             ..++....++.|+.+.++++... .++...  +              .....+...++... .          
T Consensus       188 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  266 (353)
T d1jl5a_         188 VAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL  266 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTC
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence                   11222234566777777664322 111000  0              00111222221110 0          


Q ss_pred             -------CCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528          173 -------PDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP  241 (281)
Q Consensus       173 -------~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~  241 (281)
                             ..+..++..+++|++|++++| .++.+|   ..+++|+.|++++| +++.+|.  .+.+|++|++++|+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp---~~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         267 YYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---ALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP  335 (353)
T ss_dssp             CEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred             cccccccCccccccccCCCCCEEECCCC-ccCccc---cccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc
Confidence                   001111113467888888874 677777   34677888888774 5777765  45678888888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.37  E-value=1.4e-10  Score=97.10  Aligned_cols=72  Identities=26%  Similarity=0.384  Sum_probs=59.6

Q ss_pred             cCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecC
Q 023528          159 RFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID  238 (281)
Q Consensus       159 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~  238 (281)
                      .+++|++|++++  +.+..+|..+++|+.|++++ +.++.+|   ..+++|++|++++|+ ++.+|.  .+.+|++|.+.
T Consensus       282 ~~~~L~~L~Ls~--N~l~~lp~~~~~L~~L~L~~-N~L~~l~---~~~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         282 LPPSLEELNVSN--NKLIELPALPPRLERLIASF-NHLAEVP---ELPQNLKQLHVEYNP-LREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEEECCS--SCCSCCCCCCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred             cCCCCCEEECCC--CccCccccccCCCCEEECCC-CcCCccc---cccCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence            357899999998  46778888778999999998 5788888   346789999999974 888887  67789999875


Q ss_pred             C
Q 023528          239 D  239 (281)
Q Consensus       239 ~  239 (281)
                      +
T Consensus       353 ~  353 (353)
T d1jl5a_         353 S  353 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.6e-14  Score=114.92  Aligned_cols=180  Identities=17%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCc
Q 023528           45 NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR  124 (281)
Q Consensus        45 ~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~  124 (281)
                      .....+ |++|++++|....+              .+......+++|++|++++|..-...+..+..+++|++|++++|.
T Consensus        42 ~~~~~~-L~~LdLs~~~i~~~--------------~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          42 HFSPFR-VQHMDLSNSVIEVS--------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             CCCCBC-CCEEECTTCEECHH--------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             hccCCC-CCEEECCCCccCHH--------------HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc
Confidence            344567 99999998752211              111112235699999999986444445667788999999999987


Q ss_pred             CCcccC--C-CCCCCCcCeEEecCCCCccccc-hhhh-ccCCCcceEEeecCCC-CCcc--CCC---CCCCccEEeccCC
Q 023528          125 SLVSFP--E-DGFPTNLQSLVVDDLKISKPLF-EWGL-DRFACLRELRIRGGCP-DLVS--SPR---FPASLTQLGISDM  193 (281)
Q Consensus       125 ~l~~l~--~-~~~~~~L~~L~l~~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~-~~~~--~~~---~~~~L~~L~l~~c  193 (281)
                      .++...  . ...+++|++|++++|..+++.. ...+ ..+++|+.|++++ |. .+++  +..   ..++|++|++++|
T Consensus       107 ~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-CGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc-cccccccccccccccccccccccccccc
Confidence            775321  1 1357899999999998774422 1123 3457899999998 63 2332  111   3568999999999


Q ss_pred             CCCccccc-cCCCCCCcCEEeccCCCCcccccC--CCCCCCCcEEecCCC
Q 023528          194 PTLKCLSS-VGENLTSLETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDC  240 (281)
Q Consensus       194 ~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c  240 (281)
                      ..++.-.. ....+++|++|++++|..+++-..  .+.+++|+.|++.+|
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            88864322 337889999999999988865322  223689999999998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-10  Score=91.62  Aligned_cols=190  Identities=17%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCC-CCCCCCccEEEeccCccccccc-
Q 023528           29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEG-GLPSTKLTRLTIWKCKNLKALP-  106 (281)
Q Consensus        29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~lp-  106 (281)
                      ++++.++. +++.+|.  .+|.++++|+++++.                +..++.. +..+++|++|+++++.....++ 
T Consensus        11 ~~i~c~~~-~l~~iP~--~l~~~l~~L~Ls~n~----------------i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~   71 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPS--DLPRNAIELRFVLTK----------------LRVIQKGAFSGFGDLEKIEISQNDVLEVIEA   71 (242)
T ss_dssp             SEEEEESC-SCSSCCS--CSCSCCSEEEEESCC----------------CCEECTTTTTTCTTCCEEEEESCTTCCEECS
T ss_pred             CEEEEeCC-CCCCcCC--CCCCCCCEEECcCCc----------------CCccChhHhhccchhhhhhhccccccceeec
Confidence            45566543 3667774  344449999998753                3444442 3557899999999987666565 


Q ss_pred             ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec-CCCCCccCCC---
Q 023528          107 NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG-GCPDLVSSPR---  180 (281)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~---  180 (281)
                      ..+..++.++++.+..+..+..++..  ..+++|+.+++.++. +...+  .+..+.+++.+.... .+..+..++.   
T Consensus        72 ~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~--~~~~~~~l~~l~~~~~~n~~l~~i~~~~~  148 (242)
T d1xwdc1          72 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSF  148 (242)
T ss_dssp             SSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCC--CCTTTCBSSCEEEEEESCTTCCEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhh-hcccc--ccccccccccccccccccccccccccccc
Confidence            45678999999998877777766654  467899999999864 43443  233444444443321 0245555543   


Q ss_pred             --CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528          181 --FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP  241 (281)
Q Consensus       181 --~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~  241 (281)
                        ....++.|++.+ +.++.++.......+++++....+++++.++...+  +++|++|++.++.
T Consensus       149 ~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         149 VGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             TTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             ccccccceeeeccc-ccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence              345788899988 68888885555667777777666688999987543  6899999999876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=4.1e-10  Score=80.27  Aligned_cols=98  Identities=18%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccccc
Q 023528           29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNC  108 (281)
Q Consensus        29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~  108 (281)
                      |+|+++++. ++.++.++.+++ |++|+++++.                ++.+|..+..+++|+.|+++++ .++.+| +
T Consensus         1 R~L~Ls~n~-l~~l~~l~~l~~-L~~L~ls~N~----------------l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~   60 (124)
T d1dcea3           1 RVLHLAHKD-LTVLCHLEQLLL-VTHLDLSHNR----------------LRALPPALAALRCLEVLQASDN-ALENVD-G   60 (124)
T ss_dssp             SEEECTTSC-CSSCCCGGGGTT-CCEEECCSSC----------------CCCCCGGGGGCTTCCEEECCSS-CCCCCG-G
T ss_pred             CEEEcCCCC-CCCCcccccCCC-CCEEECCCCc----------------cCcchhhhhhhhcccccccccc-cccccC-c
Confidence            467777665 666666667777 7777776632                3344444445567777777773 455554 4


Q ss_pred             CcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCC
Q 023528          109 IHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLK  147 (281)
Q Consensus       109 ~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~  147 (281)
                      +..+++|+++++++ ..+..++..   ..+++|+.+++++|+
T Consensus        61 ~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          61 VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cccccccCeEECCC-CccCCCCCchhhcCCCCCCEEECCCCc
Confidence            66777777777776 344444432   345666666666643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=1.7e-09  Score=83.12  Aligned_cols=119  Identities=18%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcc-cCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528           91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVS-FPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR  167 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  167 (281)
                      .+.++.++ ..++.+|+++  .+++++|++++. .+.. ++..  ..+++|+.|+++++ .+..++...+..+++|++|+
T Consensus        10 ~~~v~Cs~-~~L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTG-RGLKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeC-CCcCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccccccccccccccceee
Confidence            34566665 4566677655  256777777763 3432 3222  34567777777663 33333344566666677777


Q ss_pred             eecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          168 IRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       168 l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      +++  +.+..++.    ..++|++|++++ +.++.++..+ ..+++|++++++++
T Consensus        85 Ls~--N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          85 LGE--NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCS--CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ecc--ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccc
Confidence            666  45555543    345666666666 4566665444 56666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4e-10  Score=84.30  Aligned_cols=78  Identities=13%  Similarity=0.106  Sum_probs=36.6

Q ss_pred             CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEee
Q 023528           90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR  169 (281)
Q Consensus        90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  169 (281)
                      ++++|++++| .++.++..+..+++|++|+++++ .+..++....+++|++|++++|. ++.++...+..+++|++|+++
T Consensus        19 ~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCccccccccccccceec
Confidence            4555555553 34444433344555555555552 34444433444555555555532 333332233444555555554


Q ss_pred             c
Q 023528          170 G  170 (281)
Q Consensus       170 ~  170 (281)
                      +
T Consensus        96 ~   96 (162)
T d1a9na_          96 N   96 (162)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=5.4e-09  Score=80.15  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             CCCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcccc
Q 023528           76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPL  152 (281)
Q Consensus        76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~  152 (281)
                      ..+..+|..+.  +++++|+++++...+.++ ..+..+++|++|+++++ .+..++..  ..+++|++|++++ +.++.+
T Consensus        18 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l   93 (192)
T d1w8aa_          18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE-NKIKEI   93 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-CCCCEE
T ss_pred             CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeecc-cccccc
Confidence            35667776543  488899998864433343 45678889999999874 45444443  4578889999988 466677


Q ss_pred             chhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCc
Q 023528          153 FEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLK  197 (281)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~  197 (281)
                      +...|.++++|++|++++  +.+..++.    ..++|++|++++ +.+.
T Consensus        94 ~~~~F~~l~~L~~L~L~~--N~l~~i~~~~f~~l~~L~~l~L~~-N~~~  139 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYD--NQISCVMPGSFEHLNSLTSLNLAS-NPFN  139 (192)
T ss_dssp             CSSSSTTCTTCCEEECCS--SCCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred             CHHHHhCCCcccccccCC--ccccccCHHHhcCCcccccccccc-cccc
Confidence            666788888999999988  56776654    456888888888 4444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=3.1e-09  Score=75.61  Aligned_cols=82  Identities=21%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             CCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch-hhhccCCCcc
Q 023528           86 LPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE-WGLDRFACLR  164 (281)
Q Consensus        86 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~  164 (281)
                      ..+++|++|+++++ .++.+|.++..+++|+.|++++ ..++.++....+++|+++++++|. +..++. ..+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCC-ccCcchhhhhhhhccccccccc-ccccccCccccccccCeEECCCCc-cCCCCCchhhcCCCCCC
Confidence            34556777777763 4566666666677777777776 355555544556666666666633 322221 2345556666


Q ss_pred             eEEeec
Q 023528          165 ELRIRG  170 (281)
Q Consensus       165 ~L~l~~  170 (281)
                      .|++++
T Consensus        94 ~L~l~~   99 (124)
T d1dcea3          94 LLNLQG   99 (124)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.5e-09  Score=79.77  Aligned_cols=79  Identities=15%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccch-hhhccCCCcc
Q 023528           88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFE-WGLDRFACLR  164 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~  164 (281)
                      +++|+.|++++| .++.+ +++..+++|++|+++++ .+..++..  ..+++|++|++.+|. +..++. ..+..+++|+
T Consensus        40 l~~L~~L~Ls~N-~i~~l-~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          40 LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLT  115 (162)
T ss_dssp             TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCC
T ss_pred             cccCCEEECCCC-CCCcc-CCcccCcchhhhhcccc-cccCCCccccccccccccceecccc-ccccccccccccccccc
Confidence            334555555553 33344 23444555555555543 33334332  234455555555532 222211 1244445555


Q ss_pred             eEEeec
Q 023528          165 ELRIRG  170 (281)
Q Consensus       165 ~L~l~~  170 (281)
                      +|++++
T Consensus       116 ~L~l~~  121 (162)
T d1a9na_         116 YLCILR  121 (162)
T ss_dssp             EEECCS
T ss_pred             hhhcCC
Confidence            555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.5e-07  Score=67.33  Aligned_cols=78  Identities=12%  Similarity=-0.022  Sum_probs=39.1

Q ss_pred             ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528           91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI  168 (281)
Q Consensus        91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  168 (281)
                      .+.++.++ ..+..+|..+..+++|++|++.+.+.++.++..  ..+++|+.|++++ +.++.++...|..+++|++|++
T Consensus        10 ~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceec
Confidence            34455554 333444555555566666666543445544432  3345555555555 2344444444555555555555


Q ss_pred             ec
Q 023528          169 RG  170 (281)
Q Consensus       169 ~~  170 (281)
                      ++
T Consensus        88 s~   89 (156)
T d2ifga3          88 SF   89 (156)
T ss_dssp             CS
T ss_pred             cC
Confidence            55

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.2e-07  Score=65.27  Aligned_cols=99  Identities=23%  Similarity=0.152  Sum_probs=57.8

Q ss_pred             ccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEe
Q 023528          115 LLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLG  189 (281)
Q Consensus       115 L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~  189 (281)
                      .+.++..+ ......|.. ...++|+.|++.+++.++.++...|.++++|+.|++++  +.+..++.    ..++|++|+
T Consensus        10 ~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~--N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK--SGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS--SCCCEECTTGGGSCSCCCEEE
T ss_pred             CCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec--cccCCccccccccccccccee
Confidence            33455544 233333332 34567788888776667777666677777777777776  44555533    344666666


Q ss_pred             ccCCCCCccccccCCCCCCcCEEeccCC
Q 023528          190 ISDMPTLKCLSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       190 l~~c~~l~~l~~~~~~l~~L~~L~l~~c  217 (281)
                      +++ +.++.+|..+....+|++|+++++
T Consensus        87 Ls~-N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          87 LSF-NALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             ccC-CCCcccChhhhccccccccccCCC
Confidence            666 456666544422334666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.46  E-value=1.4e-09  Score=84.01  Aligned_cols=14  Identities=36%  Similarity=0.361  Sum_probs=7.6

Q ss_pred             CCCCCcCEEeccCC
Q 023528          204 ENLTSLETLDLSNC  217 (281)
Q Consensus       204 ~~l~~L~~L~l~~c  217 (281)
                      ..+++|++|+++++
T Consensus       137 ~~l~~L~~L~L~~N  150 (198)
T d1m9la_         137 AALDKLEDLLLAGN  150 (198)
T ss_dssp             TTTTTCSEEEECSS
T ss_pred             cCCCccceeecCCC
Confidence            45555555555553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.44  E-value=8.2e-10  Score=85.35  Aligned_cols=85  Identities=25%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             hccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC---CCCCC
Q 023528          157 LDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK---QGLPK  230 (281)
Q Consensus       157 ~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~---~~~~~  230 (281)
                      +..+++|+.|++++  +.+++++.   .+++|+.|++++ +.++.++ ....+++|++|++++| +++.++.   ...++
T Consensus        66 l~~l~~L~~L~Ls~--N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~  140 (198)
T d1m9la_          66 LSGMENLRILSLGR--NLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALD  140 (198)
T ss_dssp             HHHHTTCCEEECCE--EEECSCSSHHHHHHHCCEEECSE-EECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTT
T ss_pred             ccCCccccChhhcc--ccccccccccccccccccccccc-ccccccc-cccccccccccccccc-hhccccccccccCCC
Confidence            44555566666655  34444443   234677777777 5677765 3467789999999984 5665543   23468


Q ss_pred             CCcEEecCCCchHHHH
Q 023528          231 SLLRLGIDDCPLMEKR  246 (281)
Q Consensus       231 ~L~~L~l~~c~~l~~~  246 (281)
                      +|++|++.+++.....
T Consensus       141 ~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         141 KLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             TCSEEEECSSHHHHHH
T ss_pred             ccceeecCCCccccCc
Confidence            9999999999854443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=1.4e-07  Score=78.63  Aligned_cols=204  Identities=15%  Similarity=0.111  Sum_probs=111.3

Q ss_pred             CcCceeeccCCcCccc-----c-ccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccC
Q 023528           26 ATLEHLEVTHCSNLAF-----L-SWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKC   99 (281)
Q Consensus        26 ~~L~~L~l~~~~~l~~-----l-~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c   99 (281)
                      ++|++|+++++. +..     + ..+...+. |+.++++++..-.....     .......+......+++|+.|++++|
T Consensus        31 ~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~-L~~l~l~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          31 DSVKEIVLSGNT-IGTEAARWLSENIASKKD-LEIAEFSDIFTGRVKDE-----IPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SCCCEEECTTSE-ECHHHHHHHHHTTTTCTT-CCEEECCSCCTTSCGGG-----SHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             CCCCEEECcCCc-CCHHHHHHHHHHHHhCCC-CCEEECCCCcccccccc-----cchHHHHHHHHHhhCCCccccccccc
Confidence            688999999874 331     1 12556777 99999987641110000     00000111111223567888888886


Q ss_pred             cccc----cccccCcCCCCccEEeecCCcCCcc---------cCC------CCCCCCcCeEEecCCCCccc---cchhhh
Q 023528          100 KNLK----ALPNCIHNLTSLLHLEIRECRSLVS---------FPE------DGFPTNLQSLVVDDLKISKP---LFEWGL  157 (281)
Q Consensus       100 ~~l~----~lp~~~~~l~~L~~L~l~~~~~l~~---------l~~------~~~~~~L~~L~l~~~~~~~~---~~~~~~  157 (281)
                      ..-.    .+...+...++|++|+++++. +..         +..      ....+.|+.+.++++..-..   .....+
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            4211    233344567888888888753 211         000      02345778888877432211   111234


Q ss_pred             ccCCCcceEEeecCCCCCcc------CCC---CCCCccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCcccc
Q 023528          158 DRFACLRELRIRGGCPDLVS------SPR---FPASLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLKYF  223 (281)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~------~~~---~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~i  223 (281)
                      ...+.|+.|++++ |. ++.      +..   ..++|+.|+++++ .++.     +......+++|++|++++|. ++..
T Consensus       183 ~~~~~L~~L~L~~-n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~  258 (344)
T d2ca6a1         183 QSHRLLHTVKMVQ-NG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSAR  258 (344)
T ss_dssp             HHCTTCCEEECCS-SC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHH
T ss_pred             hhhhhhccccccc-cc-ccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCch
Confidence            5667888888887 43 322      111   3457888888874 4542     32122567788888888864 4331


Q ss_pred             cC--------CCCCCCCcEEecCCCc
Q 023528          224 SK--------QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       224 ~~--------~~~~~~L~~L~l~~c~  241 (281)
                      ..        .....+|++|+++++.
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCc
Confidence            11        0113578888888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.37  E-value=6.7e-05  Score=61.84  Aligned_cols=222  Identities=16%  Similarity=0.064  Sum_probs=117.3

Q ss_pred             ccceeecccCCCCCc-----ccCCCCCccCcCceeeccCCcCcc---ccc--------cCCCcCCcCcEEEecCCcchhc
Q 023528            2 KQDISRSSSGSTSRT-----PFSSENELPATLEHLEVTHCSNLA---FLS--------WNGNLPRALKYLYVKDCSKLES   65 (281)
Q Consensus         2 ~~l~~l~~~~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~l~---~l~--------~~~~l~~~L~~L~l~~~~~l~~   65 (281)
                      +.+++|+++++. +.     .+.......++|+.++++++..-.   ..+        .+...++ |++|++++|. +..
T Consensus        31 ~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-L~~L~L~~n~-i~~  107 (344)
T d2ca6a1          31 DSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-LHTVRLSDNA-FGP  107 (344)
T ss_dssp             SCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-CCEEECCSCC-CCT
T ss_pred             CCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCC-cccccccccc-ccc
Confidence            456777777642 32     110011222699999998775211   111        1455677 9999998874 111


Q ss_pred             cccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc----cccc---------cCcCCCCccEEeecCCcCCcc----
Q 023528           66 LAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK----ALPN---------CIHNLTSLLHLEIRECRSLVS----  128 (281)
Q Consensus        66 ~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~----~lp~---------~~~~l~~L~~L~l~~~~~l~~----  128 (281)
                                .....+.......++|+.|++++|..-.    .+..         .....+.|+.+.+.+. .+..    
T Consensus       108 ----------~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~  176 (344)
T d2ca6a1         108 ----------TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK  176 (344)
T ss_dssp             ----------TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred             ----------ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-cccccccc
Confidence                      0111111111124578888888764210    0000         1134567777877663 2221    


Q ss_pred             -cCC-CCCCCCcCeEEecCCCCccc----cchhhhccCCCcceEEeecCCCCCccC-----CC---CCCCccEEeccCCC
Q 023528          129 -FPE-DGFPTNLQSLVVDDLKISKP----LFEWGLDRFACLRELRIRGGCPDLVSS-----PR---FPASLTQLGISDMP  194 (281)
Q Consensus       129 -l~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~---~~~~L~~L~l~~c~  194 (281)
                       +.. ....++|+.+++++|.....    .....+...++|++|++++ + .++..     ..   ..++|++|++++| 
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-  253 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIALKSWPNLRELGLNDC-  253 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHGGGCTTCCEEECTTC-
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc-c-cccccccccccccccccccchhhhhhcC-
Confidence             110 02356788888887653321    1122356677888888887 4 33221     11   3457888888886 


Q ss_pred             CCcc-----ccccC--CCCCCcCEEeccCCCCccccc-----C--CCCCCCCcEEecCCCc
Q 023528          195 TLKC-----LSSVG--ENLTSLETLDLSNCPKLKYFS-----K--QGLPKSLLRLGIDDCP  241 (281)
Q Consensus       195 ~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~~i~-----~--~~~~~~L~~L~l~~c~  241 (281)
                      .++.     +....  .....|++|++++| .++.-.     .  ....++|++|+++++.
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            4443     21111  23467888999885 454311     1  0124678888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.00093  Score=48.57  Aligned_cols=78  Identities=22%  Similarity=0.152  Sum_probs=41.7

Q ss_pred             CCCccEEEeccCcccccc---cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccc------hhh
Q 023528           88 STKLTRLTIWKCKNLKAL---PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLF------EWG  156 (281)
Q Consensus        88 ~~~L~~L~l~~c~~l~~l---p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~------~~~  156 (281)
                      +++|++|++++| .++.+   +..+..+++|+.|++++ ..++.++..  ....+|+.+++.+|+......      ...
T Consensus        64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            457777777774 33333   22345667777777776 355554432  122356777777654432211      123


Q ss_pred             hccCCCcceEE
Q 023528          157 LDRFACLRELR  167 (281)
Q Consensus       157 ~~~l~~L~~L~  167 (281)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0021  Score=46.53  Aligned_cols=33  Identities=27%  Similarity=0.203  Sum_probs=14.0

Q ss_pred             CccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528          184 SLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC  217 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c  217 (281)
                      +|+.|++++ +.++.++.-. .....|+.++++++
T Consensus        92 ~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          92 NLKILNLSG-NELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             TCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             ccccccccc-CccccchhhhhhhccccceeecCCC
Confidence            444444444 3444444211 22234555555553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0085  Score=50.02  Aligned_cols=103  Identities=22%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             CccEEeecCCcCCcccCC---CCCCCCcCeEEecCCCCccccc----hhhhccCCCcceEEeecCCCCCccCC-------
Q 023528          114 SLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLKISKPLF----EWGLDRFACLRELRIRGGCPDLVSSP-------  179 (281)
Q Consensus       114 ~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~-------  179 (281)
                      .|+.|++++ ..++....   ...++++++|++.+|. +++..    ...+..+++|++|++++ + .+++..       
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~-N-~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRS-N-ELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTT-C-CCHHHHHHHHHHT
T ss_pred             CCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcC-C-cCChHHHHHHHHH
Confidence            578888875 44543211   1345788899998875 32211    12356788899999887 4 443211       


Q ss_pred             --CCCCCccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCccc
Q 023528          180 --RFPASLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLKY  222 (281)
Q Consensus       180 --~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~  222 (281)
                        ....+|++|++++| .++.     ++.....+++|++|++++| .++.
T Consensus        79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH
T ss_pred             HhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccc-cchh
Confidence              12346888888886 4543     2322256788888888885 3443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0032  Score=52.80  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             CCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCcc-----cCC-CCCCCCcCeEEecCCCCccccchh----h
Q 023528           89 TKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLVS-----FPE-DGFPTNLQSLVVDDLKISKPLFEW----G  156 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~----~  156 (281)
                      ++|++|++++ ..++..  .+-+..+++++.|++.+|. ++.     +.. ....++|+.|++++|. +++....    .
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHH
Confidence            3799999987 555432  2234578899999999984 432     111 1356799999999864 4332111    1


Q ss_pred             hc-cCCCcceEEeecCCCCCccCC-----C---CCCCccEEeccCCCCCcc
Q 023528          157 LD-RFACLRELRIRGGCPDLVSSP-----R---FPASLTQLGISDMPTLKC  198 (281)
Q Consensus       157 ~~-~l~~L~~L~l~~~~~~~~~~~-----~---~~~~L~~L~l~~c~~l~~  198 (281)
                      +. ...+|++|++++ |. +++..     .   ..++|++|+++++ .++.
T Consensus        79 l~~~~~~L~~L~L~~-n~-it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~  126 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQN-CC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD  126 (460)
T ss_dssp             TCSTTCCCCEEECTT-SC-CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH
T ss_pred             HhcCCCCCCEEECCC-CC-ccccccccccchhhccccccccccccc-cchh
Confidence            22 235799999998 64 44321     1   4568999999994 5554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.26  E-value=0.025  Score=40.72  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=17.0

Q ss_pred             CCccEEEeccCccccc-----ccccCcCCCCccEEeecCC
Q 023528           89 TKLTRLTIWKCKNLKA-----LPNCIHNLTSLLHLEIREC  123 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~~  123 (281)
                      ++|+.|+++++..++.     +-..+...++|++|++++|
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            4566666665433221     1123344555666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.09  E-value=0.068  Score=38.31  Aligned_cols=33  Identities=21%  Similarity=0.091  Sum_probs=16.8

Q ss_pred             CccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCC
Q 023528          184 SLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNC  217 (281)
Q Consensus       184 ~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c  217 (281)
                      +|++|++++| .++.     +.......++|++|+++++
T Consensus        73 ~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          73 SLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            4555555553 3332     2211245566777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.72  E-value=0.025  Score=40.66  Aligned_cols=8  Identities=13%  Similarity=0.144  Sum_probs=3.2

Q ss_pred             CCcceEEe
Q 023528          161 ACLRELRI  168 (281)
Q Consensus       161 ~~L~~L~l  168 (281)
                      ++|++|++
T Consensus       132 ~~L~~L~l  139 (166)
T d1io0a_         132 TTLLKFGY  139 (166)
T ss_dssp             SSCCEEEC
T ss_pred             CCcCEEeC
Confidence            33444433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.80  E-value=0.16  Score=35.99  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             CCccEEEeccCcccc-----cccccCcCCCCccEEeecCC
Q 023528           89 TKLTRLTIWKCKNLK-----ALPNCIHNLTSLLHLEIREC  123 (281)
Q Consensus        89 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~  123 (281)
                      ++|++|+++++..++     .+-..+...++|++|+++++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            466667666643332     12223345566677777664