Citrus Sinensis ID: 023585

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
ccccccccccccccEEEEEEEcEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEcEEcccccEEEEcccccccccccccccccEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEccccEEEEEEcEEccccccccccccccEEEcEEEEEEEEEcccEEEEEEEcccccEEcEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccccccc
ccHHcccccccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEcccHccEEEccccccEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEccEEEEEEEccccccccccccccccEEEEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEcccccccccccccEEEEEccccccccHHcccccccccccccc
mwrqrtlpftrpnliefmNSRSIIISnvifqnspfwnihpvycsNVVIRYVTIlapadspntdgidpdsssnvciedsyistgddlVAVKSgwdeygiayghpssgitirrvtgsspfsgiavgsetsggVENVLAEHINLynvgvgihvktnigrggfirniTVSDVYMENARKGIKiagdvgdhpddkfnpnalpvvngitikdvwgtkvqqsgliqglknspftgiclsninlqgvagptspplkcsdvsgsayqvkpwpcselsssqqtgacsnhf
mwrqrtlpftrpnlieFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPAdspntdgidpDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKtnigrggfirNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSelsssqqtgacsnhf
MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
*******PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAP****************VCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAG***************************************
MWR****PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPC****************
MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPW******************
MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELS************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.985 0.562 0.473 3e-70
P27644312 Polygalacturonase OS=Rhiz yes no 0.7 0.628 0.333 6e-21
Q9LW07456 Probable polygalacturonas no no 0.907 0.557 0.297 2e-18
Q8RY29433 Polygalacturonase ADPG2 O no no 0.796 0.515 0.309 3e-18
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.828 0.451 0.301 5e-18
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.817 0.521 0.276 2e-16
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.842 0.465 0.300 3e-16
Q02096462 Polygalacturonase OS=Pers N/A no 0.846 0.512 0.261 2e-15
P43212514 Polygalacturonase OS=Cryp N/A no 0.792 0.431 0.310 2e-14
P05117457 Polygalacturonase-2 OS=So N/A no 0.932 0.571 0.273 7e-14
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 134/283 (47%), Positives = 181/283 (63%), Gaps = 7/283 (2%)

Query: 1   MWRQR----TLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAP 56
           +W QR     L +TRP LIE M S  I ISN+   NSP WN+HPVY  N++I+ +TILAP
Sbjct: 184 LWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAP 243

Query: 57  ADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS 116
             SPNTDGI+PDS +N  IED YI +GDD VAVKSGWDEYGIAYG P+  + IRR+T  S
Sbjct: 244 VRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCIS 303

Query: 117 PFSG-IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARK 175
           P+S  IA+GSE SGG+++V AE I   N   GI +KT IGRGG++++I V  + M+  + 
Sbjct: 304 PYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKW 363

Query: 176 GIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNIN 235
              + G+ G H D+ ++P A PV+ GI  +D+    V  +  ++G+ + PFTGIC+SN+ 
Sbjct: 364 AFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVT 423

Query: 236 LQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSS--QQTGAC 276
           +   A     P  C+DV G +  V P PCS L     ++T  C
Sbjct: 424 IHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLC 466

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
224075086 412 predicted protein [Populus trichocarpa] 1.0 0.679 0.853 1e-137
255537765 446 Polygalacturonase precursor, putative [R 0.996 0.625 0.835 1e-134
356554060 446 PREDICTED: probable polygalacturonase-li 0.989 0.621 0.823 1e-133
356524183 474 PREDICTED: probable polygalacturonase-li 0.985 0.582 0.812 1e-131
356567484 442 PREDICTED: probable polygalacturonase-li 0.985 0.624 0.815 1e-130
297742322 447 unnamed protein product [Vitis vinifera] 0.992 0.621 0.816 1e-129
357494037 450 Glycoside hydrolase family 28 protein [M 0.996 0.62 0.776 1e-126
449452247 445 PREDICTED: probable polygalacturonase-li 1.0 0.629 0.75 1e-122
15236625 444 glycoside hydrolase family 28 protein / 0.996 0.628 0.725 1e-117
356499323 445 PREDICTED: LOW QUALITY PROTEIN: probable 0.914 0.575 0.781 1e-116
>gi|224075086|ref|XP_002304552.1| predicted protein [Populus trichocarpa] gi|222841984|gb|EEE79531.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/280 (85%), Positives = 255/280 (91%)

Query: 1   MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSP 60
           MWRQRTL FTRPNL+EF+NSR IIISNVIF+NSPFWNIHPVY  NVVIRYVTILAP DSP
Sbjct: 133 MWRQRTLLFTRPNLVEFVNSRGIIISNVIFRNSPFWNIHPVYSRNVVIRYVTILAPLDSP 192

Query: 61  NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120
           NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYG PSS ITIRR+TGSSPFSG
Sbjct: 193 NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSDITIRRITGSSPFSG 252

Query: 121 IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIA 180
           IAVGSETSGGV+NVL E++NLYN+GVGIH+KTNIGRGGFI+NITV+DVYMEN RKGIKIA
Sbjct: 253 IAVGSETSGGVKNVLVENVNLYNMGVGIHIKTNIGRGGFIKNITVTDVYMENVRKGIKIA 312

Query: 181 GDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVA 240
           GDVGDHPDD FNPNALPVV GIT+K +WG KVQQ G IQGLKNSPFTGICLSNINL GV 
Sbjct: 313 GDVGDHPDDSFNPNALPVVYGITLKSIWGEKVQQPGSIQGLKNSPFTGICLSNINLHGVP 372

Query: 241 GPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF 280
           GP S P KCSDVSGSA  V PWPCSEL+S  QTG+CS+HF
Sbjct: 373 GPRSSPWKCSDVSGSALLVSPWPCSELTSPHQTGSCSDHF 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537765|ref|XP_002509949.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223549848|gb|EEF51336.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356554060|ref|XP_003545367.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356524183|ref|XP_003530711.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356567484|ref|XP_003551949.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|297742322|emb|CBI34471.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357494037|ref|XP_003617307.1| Glycoside hydrolase family 28 protein [Medicago truncatula] gi|355518642|gb|AET00266.1| Glycoside hydrolase family 28 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452247|ref|XP_004143871.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] gi|449501789|ref|XP_004161459.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15236625|ref|NP_194113.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|4454051|emb|CAA23048.1| putative polygalacturonase [Arabidopsis thaliana] gi|7269231|emb|CAB81300.1| putative polygalacturonase [Arabidopsis thaliana] gi|17065242|gb|AAL32775.1| putative polygalacturonase [Arabidopsis thaliana] gi|22136230|gb|AAM91193.1| putative polygalacturonase [Arabidopsis thaliana] gi|332659410|gb|AEE84810.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499323|ref|XP_003518491.1| PREDICTED: LOW QUALITY PROTEIN: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.996 0.628 0.725 3.2e-113
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.985 0.614 0.698 1.7e-107
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.960 0.571 0.503 4e-74
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.982 0.578 0.501 2.3e-71
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.946 0.556 0.469 1.2e-63
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.95 0.584 0.472 3.8e-62
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.95 0.567 0.441 3.8e-62
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.964 0.545 0.472 6.2e-62
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.921 0.540 0.463 1.2e-60
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.967 0.535 0.418 2.5e-56
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 203/280 (72%), Positives = 239/280 (85%)

Query:     1 MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSP 60
             MWR RTL +TRPNLIEF +S+ IIISNVIFQNSPFWNIHPVYCSNVVI +VTILAP DSP
Sbjct:   166 MWRSRTLKYTRPNLIEFKDSKEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAPQDSP 225

Query:    61 NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120
             NTDGIDPDSS NVCIEDSYISTGDDLVA+KSGWD+YGIAYG PSS ITIRR+TGSSPF+G
Sbjct:   226 NTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSNITIRRITGSSPFAG 285

Query:   121 IAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIA 180
             IA+GSETSGG++N++AEHI L N+GVG+++KTNIGRGG+I+NI +SDVY++ A+ GIKIA
Sbjct:   286 IAIGSETSGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIA 345

Query:   181 GDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVA 240
             GD GDHPD+ +NPNALPVV GI IK+VWG  V+ +G IQGLK SPFTGICLS INL G  
Sbjct:   346 GDTGDHPDENYNPNALPVVKGIHIKNVWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSL 405

Query:   241 GPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF 280
               +    KCSDVSG++ +V PWPCSEL ++  +  CS+ F
Sbjct:   406 N-SYKTWKCSDVSGTSLKVSPWPCSELRTTGGSNLCSSTF 444
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-36
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 3e-28
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-22
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 7e-21
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 4e-20
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 2e-18
PLN03010409 PLN03010, PLN03010, polygalacturonase 7e-18
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-17
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  135 bits (342), Expect = 2e-36
 Identities = 68/163 (41%), Positives = 88/163 (53%), Gaps = 1/163 (0%)

Query: 11  RPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSS 70
           RP  +     R++++  +  +NSP W +HPV C N+  R +TI A     NTDG DP S 
Sbjct: 237 RPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSC 295

Query: 71  SNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGG 130
           SNV IE     TGDD +A+KSG    G     PS  I IR    SS   G+ +GSE  GG
Sbjct: 296 SNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGG 355

Query: 131 VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA 173
           V+N+  E   + N   G+ +KTN GRGG +RNI   D  M N 
Sbjct: 356 VQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNV 398

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PLN03010409 polygalacturonase 99.91
PLN03003456 Probable polygalacturonase At3g15720 99.91
PLN02218431 polygalacturonase ADPG 99.91
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.91
PLN02793443 Probable polygalacturonase 99.9
PLN02155394 polygalacturonase 99.9
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.89
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.65
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.58
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.2
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.01
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.74
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.67
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.61
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.54
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.5
smart00656190 Amb_all Amb_all domain. 98.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.22
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.21
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.17
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.16
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.07
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.03
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.91
smart00656190 Amb_all Amb_all domain. 97.63
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.52
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.38
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.64
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 94.75
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 94.01
PLN02773317 pectinesterase 93.85
PLN02480343 Probable pectinesterase 92.44
PLN02480343 Probable pectinesterase 90.77
PLN02773317 pectinesterase 90.75
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 89.5
PLN02682369 pectinesterase family protein 87.65
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 87.1
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 86.85
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 86.49
PRK10531422 acyl-CoA thioesterase; Provisional 85.4
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 85.29
PLN02432293 putative pectinesterase 85.24
PLN02634359 probable pectinesterase 85.24
PRK10531422 acyl-CoA thioesterase; Provisional 85.08
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 84.91
PLN02916502 pectinesterase family protein 84.36
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 83.85
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 83.69
PLN02665366 pectinesterase family protein 83.27
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 83.1
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 83.02
PLN02170529 probable pectinesterase/pectinesterase inhibitor 82.95
PLN02671359 pectinesterase 82.29
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 82.12
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 81.73
PLN02497331 probable pectinesterase 81.01
PLN02301548 pectinesterase/pectinesterase inhibitor 80.94
PLN02176340 putative pectinesterase 80.91
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 80.82
PLN02201520 probable pectinesterase/pectinesterase inhibitor 80.77
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 80.73
PLN02665366 pectinesterase family protein 80.7
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 80.44
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 80.37
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=4.1e-53  Score=396.59  Aligned_cols=254  Identities=30%  Similarity=0.450  Sum_probs=224.6

Q ss_pred             CcccCCCCCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE
Q 023585            1 MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI   80 (280)
Q Consensus         1 ~~~~~~~~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i   80 (280)
                      ||..+   ..||++++|.+|+|++|+||+++|||+|++++..|++|+|++++|.++.+.+|+||||+.+|+||+|+||+|
T Consensus       130 wW~~~---~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I  206 (456)
T PLN03003        130 WWEHK---GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCII  206 (456)
T ss_pred             hhhcc---cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEE
Confidence            77653   479999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             EcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec----CCEEeEEEEeeEEEeeCcEEEEEEEcCC
Q 023585           81 STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNVGVGIHVKTNIGR  156 (280)
Q Consensus        81 ~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~----g~i~nI~~~n~~i~~~~~gi~Iks~~g~  156 (280)
                      .+|||||++|++           ++||+|+||+|.. +|||+|||++.    +.|+||+|+||++.++.+|++||++.|+
T Consensus       207 ~tGDDCIaiksg-----------s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg  274 (456)
T PLN03003        207 ATGDDCIAINSG-----------TSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGG  274 (456)
T ss_pred             ecCCCeEEeCCC-----------CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCC
Confidence            999999999996           7999999999975 89999999974    4599999999999999999999999988


Q ss_pred             CceEEEEEEEeEEEcccCeeEEEEeeeCCCC-CCCC-CCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEe
Q 023585          157 GGFIRNITVSDVYMENARKGIKIAGDVGDHP-DDKF-NPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSN  233 (280)
Q Consensus       157 ~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~N  233 (280)
                      +|.|+||+|+||+|+++.+||.|++.|...+ ...+ .+...+.|+||+|+||+++... .++.|.|.++.||+||+|+|
T Consensus       275 ~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~n  354 (456)
T PLN03003        275 SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRD  354 (456)
T ss_pred             CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEE
Confidence            8999999999999999999999999997432 1111 1222368999999999998654 57889999999999999999


Q ss_pred             EEEEeeC-C-CCCCCeEeeeeecCcccccCc-CCCCCCC
Q 023585          234 INLQGVA-G-PTSPPLKCSDVSGSAYQVKPW-PCSELSS  269 (280)
Q Consensus       234 v~i~~~~-~-~~~~~~~c~~~~~~~~~~~p~-~c~~~~~  269 (280)
                      |.++... + +.+..+.|.||.|....+.|+ +|++...
T Consensus       355 i~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~  393 (456)
T PLN03003        355 MKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELST  393 (456)
T ss_pred             EEEEecCCCCCCccCcEEeccccccCceECCCCccccCC
Confidence            9999873 2 334579999999999877766 7998644

>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 5e-31
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 6e-14
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 4e-08
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 4e-04
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-04
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 6e-04
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 9   FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPD 68
           + RP+ ++F   R++++  V   NSP W IHPV   NV+IR + I   +  PN DGIDP+
Sbjct: 187 YLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPE 244
Query: 69  SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFSGIAVGSE 126
           S   + IE     TGDD V +KSG D  G   G PS  I +R   V   +   G+ +GSE
Sbjct: 245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE 304
Query: 127 TSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD-----VYMENARKGIKIAG 181
            SGGV NV+A +    NV   + +KTN  RGG++ NI   D     V  E  R  ++   
Sbjct: 305 MSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDN 364
Query: 182 DVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQG 238
           + G++         LPVV  + +K++  T  + +  I+GL+N     I +S+  ++G
Sbjct: 365 EEGEY---------LPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEG 412
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-90
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 2e-85
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-80
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-62
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-61
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-58
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 4e-58
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 8e-56
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 6e-52
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-45
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-29
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-20
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-15
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 4e-15
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-05
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 8e-15
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 7e-08
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-13
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-08
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  273 bits (700), Expect = 4e-90
 Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 10/256 (3%)

Query: 2   WRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPN 61
                  + RP+ ++F   R++++  V   NSP W IHPV   NV+IR + I +    PN
Sbjct: 180 RVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPN 237

Query: 62  TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFS 119
            DGIDP+S   + IE     TGDD V +KSG D  G   G PS  I +R   V   +   
Sbjct: 238 NDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG 297

Query: 120 GIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKG-IK 178
           G+ +GSE SGGV NV+A +    NV   + +KTN  RGG++ NI   D    N  +  I+
Sbjct: 298 GLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIR 357

Query: 179 IAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQG 238
           I     +   +      LPVV  + +K++  T  + +  I+GL+N     I +S+  ++G
Sbjct: 358 INLRYDNEEGE-----YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEG 412

Query: 239 VAGPTSPPLKCSDVSG 254
                        +  
Sbjct: 413 AKISVLLEFGQLGMEN 428
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.95
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.93
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.93
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.92
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.92
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.92
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.91
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.91
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.9
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.9
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.9
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.88
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.82
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.82
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.66
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.61
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.54
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.54
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.51
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.49
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.24
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.58
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.56
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.54
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.51
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.41
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.38
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.35
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.26
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.25
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.2
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.1
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.01
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.95
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.77
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.71
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.61
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.25
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.24
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.11
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.05
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.02
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.97
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.84
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.73
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.67
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.5
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.88
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.12
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.03
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.87
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 94.58
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 92.89
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.72
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.47
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.01
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 89.91
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 89.32
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 88.68
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.7
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 83.52
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 82.66
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 81.47
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 80.59
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 80.59
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=7.7e-50  Score=378.02  Aligned_cols=233  Identities=35%  Similarity=0.535  Sum_probs=211.9

Q ss_pred             CCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceE
Q 023585            8 PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV   87 (280)
Q Consensus         8 ~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~i   87 (280)
                      ...||++|.|.+|+|++|+||+++|||+|++++..|+||+|+|++|.++  .+|+||||+.+|+||+|+||+|.++||||
T Consensus       186 ~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~~gDDcI  263 (448)
T 3jur_A          186 HYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTGDDSV  263 (448)
T ss_dssp             CCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEEESSEEE
T ss_pred             ccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEEeCCCcE
Confidence            3579999999999999999999999999999999999999999999996  68999999999999999999999999999


Q ss_pred             EEecCCCccCcccCCCeecEEEEeEEEeC--CCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEE
Q 023585           88 AVKSGWDEYGIAYGHPSSGITIRRVTGSS--PFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITV  165 (280)
Q Consensus        88 aiksg~~~~g~~~~~~~~nI~I~n~~~~~--~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f  165 (280)
                      ++|++++.+|.+...|++||+|+||+|++  +++||+|||++.+.++||+|+||+|.++.+||+||++.+++|.|+||+|
T Consensus       264 aiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~gG~v~nI~f  343 (448)
T 3jur_A          264 VIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFF  343 (448)
T ss_dssp             EEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEECCTTTCSEEEEEEE
T ss_pred             EeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEEEEcCCCceEeeEEE
Confidence            99999999998888899999999999954  3459999999999999999999999999999999999888999999999


Q ss_pred             EeEEEcccCeeE-EEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEecCCCCeecEEEEeEEEEeeCCCCC
Q 023585          166 SDVYMENARKGI-KIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTS  244 (280)
Q Consensus       166 ~ni~~~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g~~~~~i~~i~~~Nv~i~~~~~~~~  244 (280)
                      +||+|+++.+|+ .|++.|....     +...+.|+||+|+||+++....++.|.|.++.||++|+|+||++++...   
T Consensus       344 ~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~~~nv~i~~~~~---  415 (448)
T 3jur_A          344 IDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKI---  415 (448)
T ss_dssp             ESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEEEEEEEEESCSE---
T ss_pred             EEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEEEEEEEEEcccc---
Confidence            999999999988 8998886531     2234689999999999998778999999999999999999999997532   


Q ss_pred             CCeEeee
Q 023585          245 PPLKCSD  251 (280)
Q Consensus       245 ~~~~c~~  251 (280)
                       +..|.+
T Consensus       416 -~~~~~~  421 (448)
T 3jur_A          416 -SVLLEF  421 (448)
T ss_dssp             -EEEEEE
T ss_pred             -ceeEec
Confidence             345555
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-44
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 7e-42
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-40
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-39
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-35
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-31
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-30
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-30
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-11
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

 Score =  150 bits (380), Expect = 4e-44
 Identities = 54/261 (20%), Positives = 100/261 (38%), Gaps = 23/261 (8%)

Query: 2   WRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPA---- 57
                   T+P      +  + +IS +   NSP           + ++ +TI        
Sbjct: 94  GEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDN 153

Query: 58  DSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 117
              NTD  D  +S+ V I  + +   DD VAV SG + Y           +    +G   
Sbjct: 154 GGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIY----------FSGGYCSGGHG 203

Query: 118 FSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMEN-ARKG 176
            S  +VG  +   V+NV      + N   G+ +KTNI   G + ++T  D+ + + A+ G
Sbjct: 204 LSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYG 263

Query: 177 IKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQS-GLIQGLKNSPFTGICLSNIN 235
           I +  + GD       P     +    + +V G+ V     ++    +   +    ++++
Sbjct: 264 IVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVS 320

Query: 236 LQGVAGPTSPPLKCSDVSGSA 256
           + G         KC++V   A
Sbjct: 321 VSG----GKTSSKCTNVPSGA 337
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.9
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.89
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.88
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.84
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.79
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.66
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.78
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.94
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.74
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.69
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.64
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.53
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.4
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.32
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.23
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.21
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.54
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.24
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.64
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.01
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 93.8
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 89.08
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 88.15
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 83.64
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=1.1e-49  Score=362.45  Aligned_cols=235  Identities=22%  Similarity=0.338  Sum_probs=205.1

Q ss_pred             Cccc--CCCCCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCC----CCCCCCeeeCCCCccEE
Q 023585            1 MWRQ--RTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPA----DSPNTDGIDPDSSSNVC   74 (280)
Q Consensus         1 ~~~~--~~~~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~----~~~ntDGid~~~s~nV~   74 (280)
                      ||..  ......||++|.|.+|+|++|+||+|+|||+|++++..|+||+|+|++|.++.    .++|+||||+.+|+||+
T Consensus        91 wW~~~~~~~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~  170 (339)
T d1ia5a_          91 WWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVT  170 (339)
T ss_dssp             TCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEE
T ss_pred             hhhcccCCCCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEE
Confidence            8876  44556899999999999999999999999999999999999999999999863    36899999999999999


Q ss_pred             EEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcc---eecCCEEeEEEEeeEEEeeCcEEEEE
Q 023585           75 IEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS---ETSGGVENVLAEHINLYNVGVGIHVK  151 (280)
Q Consensus        75 I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs---~~~g~i~nI~~~n~~i~~~~~gi~Ik  151 (280)
                      |+||+|.++||||++|+            .+||+|+||+|.. +||++||+   +..+.++||+|+||+|.++.+|++||
T Consensus       171 I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~~-ghG~sigslG~~~~~~v~nV~v~n~~~~~t~~GirIK  237 (339)
T d1ia5a_         171 ISGATVYNQDDCVAVNS------------GENIYFSGGYCSG-GHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIK  237 (339)
T ss_dssp             EESCEEECSSCSEEESS------------EEEEEEESCEEES-SSCEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEE
T ss_pred             EeeeEEEcCCCeEEecC------------ccEEEEEEeEEec-cccceecccccCccccEEEEEEECCcccCCcceeEEe
Confidence            99999999999999997            5899999999987 78887755   45578999999999999999999999


Q ss_pred             EEcCCCceEEEEEEEeEEEccc-CeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecE
Q 023585          152 TNIGRGGFIRNITVSDVYMENA-RKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGI  229 (280)
Q Consensus       152 s~~g~~g~v~nV~f~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i  229 (280)
                      ++++++|.|+||+|+||+|+++ ++||.|++.|......   +...+.|+||+|+||+++... .+..+.|.++.||+||
T Consensus       238 t~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~---~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni  314 (339)
T d1ia5a_         238 TNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSST---PTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDW  314 (339)
T ss_dssp             EETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSC---CCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEE
T ss_pred             eeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCC---CCCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEece
Confidence            9999999999999999999998 5899999999653221   223357999999999998664 4567788899999999


Q ss_pred             EEEeEEEEeeCCCCCCCeEeeeeecC
Q 023585          230 CLSNINLQGVAGPTSPPLKCSDVSGS  255 (280)
Q Consensus       230 ~~~Nv~i~~~~~~~~~~~~c~~~~~~  255 (280)
                      +|+||++++.    +....|.|+++.
T Consensus       315 ~~~nV~itg~----~~~~~C~nv~~~  336 (339)
T d1ia5a_         315 TWTDVSVSGG----KTSSKCTNVPSG  336 (339)
T ss_dssp             EEEEEEEESS----BCCSCCBSCCTT
T ss_pred             EEEeEEEcCC----CcceEeECCCcc
Confidence            9999999853    345678888763
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure