Citrus Sinensis ID: 023596

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccEHHHcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MALFASilstpvsasvpigrrlingrshsrlfaslspsesspstpattssnnetavssrtppskpfaessrqhdpsfnyaranpagdsplgffRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGlfisnvppnvapnvdralkgsslfgmfslkerpkwmkissldelKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Flexible Loop (DISEMBL)
malfasilstpvsasvpiGRRLINGRSHSRLFAslspsesspstpattssnnetavssrtpPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISsldelktkvGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Low Complexity Region (SEG)
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLspsesspstpattssnnetaVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFlallavggslagsllCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Disordered region (IsUnstruct)
*****************************************************************************************LGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHL******
Disordered Region (DISOPRED)
*************************************************************************************************SNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNV*******LKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLY***********
Disordered Region (DISEMBL)
MALFASILSTPVSASVPIGRRLINGRSHSRLFA****************************************DPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Disordered Region (DISPRO)
***********VSASVPIGRRLINGRSHSRLFASL*****************************************FNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP***********GSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
255553454	283	conserved hypothetical protein [Ricinus	0.992	0.982	0.770	1e-111
225450017	278	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.741	1e-106
388506628	282	unknown [Lotus japonicus]	0.760	0.755	0.841	6e-99
356557188	266	PREDICTED: uncharacterized protein LOC10	0.75	0.789	0.842	6e-99
449464014	289	PREDICTED: uncharacterized protein LOC10	0.803	0.778	0.766	2e-97
15240692	262	uncharacterized protein [Arabidopsis tha	0.689	0.736	0.850	1e-91
20465418	262	unknown protein [Arabidopsis thaliana]	0.689	0.736	0.850	1e-91
297807395	264	structural constituent of ribosome [Arab	0.935	0.992	0.677	2e-91
147819726	195	hypothetical protein VITISV_007114 [Viti	0.617	0.887	0.936	6e-90
212723806	266	uncharacterized protein 114 precursor [Z	0.8	0.842	0.726	2e-88

>gi|255553454|ref|XP_002517768.1| conserved hypothetical protein [Ricinus communis] gi|223543040|gb|EEF44575.1| conserved hypothetical protein [Ricinus communis]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 236/283 (83%), Gaps = 5/283 (1%)

Query: 1   MALFASILSTPVS-ASVPIGRRLIN-GRSHSRLFASLSPSESSP--STPATTSSNNETAV 56
           MAL ASI ++P+S +S PI  R I   R     FA+LS S  S      A   +   + +
Sbjct: 1   MALSASIFTSPLSISSTPIRYRPITISRRLLCPFATLSSSSPSSSHEPAAPAPATTTSPI 60

Query: 57  SSRTPPSKPFAESSRQHDPSFNYARANPAGDSPL-GFFRSIESNIERLIFDFRFLALLAV 115
            S   PSKPFAESSR H+ SFNYA ANP+G SP+  F RS ESNIER+IFDFRFLALLAV
Sbjct: 61  DSSKNPSKPFAESSRSHNSSFNYAFANPSGSSPVVQFVRSTESNIERIIFDFRFLALLAV 120

Query: 116 GGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGM 175
           GGSLAGSLLCFLNGC+YIVDAYKVYWTSC KGVHTG+MVLRLVEAIDVYLAGTVMLIFGM
Sbjct: 121 GGSLAGSLLCFLNGCVYIVDAYKVYWTSCCKGVHTGQMVLRLVEAIDVYLAGTVMLIFGM 180

Query: 176 GLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMIL 235
           GLYGLFISNVPP+VAP VDRALKGSSLFGMF+LKERPKWMKI SLDELKTKVGHVIVMIL
Sbjct: 181 GLYGLFISNVPPDVAPQVDRALKGSSLFGMFALKERPKWMKICSLDELKTKVGHVIVMIL 240

Query: 236 LVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           LVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILH+LHK +
Sbjct: 241 LVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHNLHKSD 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450017|ref|XP_002274669.1| PREDICTED: uncharacterized protein LOC100267159 [Vitis vinifera] gi|297736322|emb|CBI24960.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/278 (74%), Positives = 227/278 (81%)

Query: 1   MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRT 60
           MALFA++  TP+S S+   R   N R  S   AS+S S    S P    S     + S  
Sbjct: 1   MALFAAMSYTPLSLSLSRLRPPTNHRRFSPCLASVSSSSHESSPPPPPPSPPTETILSSN 60

Query: 61  PPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLA 120
           PPSKP  ESSR  + ++NYA  +P     + F R  ES+IER+IFDFRFLALLAVGGSLA
Sbjct: 61  PPSKPLVESSRPLNSTYNYALPDPKASPIVRFVRYSESSIERVIFDFRFLALLAVGGSLA 120

Query: 121 GSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL 180
           GSLLCFLNGC+YIVDAYKVYWTSCVKG+HTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL
Sbjct: 121 GSLLCFLNGCVYIVDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL 180

Query: 181 FISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMF 240
           FISNVPP+V P+VDRALKGSSLFGMF+LKERPKWMKISSLDELKTKVGHVIVMILLVKMF
Sbjct: 181 FISNVPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMF 240

Query: 241 ERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           ERSKMVTIATGMDLLSYS+CIFLSSASLYIL++LHK E
Sbjct: 241 ERSKMVTIATGMDLLSYSVCIFLSSASLYILNNLHKAE 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506628|gb|AFK41380.1| unknown [Lotus japonicus]

 Score =  366 bits (940), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 180/214 (84%), Positives = 194/214 (90%), Gaps = 1/214 (0%)

Query: 65  PFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLL 124
           PF ES R  DP+FNYA AN  G   +   R+ ES+IER+IFDFRFLALLAVGGSLAGSLL
Sbjct: 70  PFVES-RPPDPAFNYAYANTNGSPIVRMVRATESSIERIIFDFRFLALLAVGGSLAGSLL 128

Query: 125 CFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN 184
           CFLNGCIYI DAYKVYWT CVKGVH+GKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN
Sbjct: 129 CFLNGCIYIFDAYKVYWTCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN 188

Query: 185 VPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSK 244
            PP+V P+VDRALKGSSLFGMF+LKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSK
Sbjct: 189 TPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSK 248

Query: 245 MVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           MV I+TG+DLLSYS+CIFLSSASLYILH+LHK +
Sbjct: 249 MVAISTGLDLLSYSVCIFLSSASLYILHNLHKTD 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557188|ref|XP_003546900.1| PREDICTED: uncharacterized protein LOC100799451 [Glycine max]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 192/210 (91%)

Query: 69  SSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLN 128
            SR  DP+FNYA  NP G+  +   R+ ES+IER+IFDFRFLALLAVGGSLAGSLLCFLN
Sbjct: 57  ESRPPDPAFNYALTNPNGNPIVRIVRATESSIERVIFDFRFLALLAVGGSLAGSLLCFLN 116

Query: 129 GCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPN 188
           GCIYI+DAYKVYW+SCVKGVHTG+MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP+
Sbjct: 117 GCIYIIDAYKVYWSSCVKGVHTGQMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPD 176

Query: 189 VAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTI 248
           V P VDRALKGSSLFGMF++KERPKWMKI SLDELKTKVGHVIVMILLVKMFERSKMVTI
Sbjct: 177 VPPTVDRALKGSSLFGMFAMKERPKWMKICSLDELKTKVGHVIVMILLVKMFERSKMVTI 236

Query: 249 ATGMDLLSYSICIFLSSASLYILHHLHKPE 278
            TG+DLL YSICIFLSSASLYILH+LHK +
Sbjct: 237 VTGLDLLCYSICIFLSSASLYILHNLHKSD 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464014|ref|XP_004149724.1| PREDICTED: uncharacterized protein LOC101217857 [Cucumis sativus] gi|449525644|ref|XP_004169826.1| PREDICTED: uncharacterized LOC101217857 [Cucumis sativus]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/236 (76%), Positives = 200/236 (84%), Gaps = 11/236 (4%)

Query: 49  SSNNETAVSSRTPPSKPFAESSRQHDPSFNYARANPAGDSP------LGFFRSIESNIER 102
           SS+N T     TPPS  F + S     +F YA  NP   +       LGF +S ES+IER
Sbjct: 59  SSSNGT-----TPPSPSFVDPSTPPHSNFTYAFPNPTPPASASLHPILGFMQSAESSIER 113

Query: 103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAID 162
           +IFDFRFLAL AVGGSLAGS LCFLNGC+YI DAYKVYW+SCVKG+HTG+MVLRLVEAID
Sbjct: 114 VIFDFRFLALFAVGGSLAGSFLCFLNGCVYICDAYKVYWSSCVKGIHTGQMVLRLVEAID 173

Query: 163 VYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDE 222
           VYLAGTVMLIFGMGLYGLFISNV P+  P+VDRAL+GSSLFGMF+LKERPKWMKISSLDE
Sbjct: 174 VYLAGTVMLIFGMGLYGLFISNVSPDEPPSVDRALQGSSLFGMFALKERPKWMKISSLDE 233

Query: 223 LKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           LKTKVGHVIVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSSASLYILH+LH+PE
Sbjct: 234 LKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHRPE 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240692|ref|NP_196876.1| uncharacterized protein [Arabidopsis thaliana] gi|9758038|dbj|BAB08699.1| unnamed protein product [Arabidopsis thaliana] gi|23297285|gb|AAN12932.1| unknown protein [Arabidopsis thaliana] gi|332004549|gb|AED91932.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 180/194 (92%), Gaps = 1/194 (0%)

Query: 87  DSPLG-FFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCV 145
           DSP   FFRS ESN+ER+IFDFRFLALLAVGGSLAGSLLCFLNGC+YIV+AYKVYWT+C 
Sbjct: 69  DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query: 146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
           KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct: 129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGM 188

Query: 206 FSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSS 265
           F++KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSS
Sbjct: 189 FAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSS 248

Query: 266 ASLYILHHLHKPEA 279
           ASLYILH+LHK E 
Sbjct: 249 ASLYILHNLHKGET 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20465418|gb|AAM20133.1| unknown protein [Arabidopsis thaliana]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/194 (85%), Positives = 180/194 (92%), Gaps = 1/194 (0%)

Query: 87  DSPLG-FFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCV 145
           DSP   FFRS ESN+ER+IFDFRFLALLAVGGSLAGSLLCFLNGC+YIV+AYKVYWT+C 
Sbjct: 69  DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query: 146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
           KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct: 129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHWPHDVPPESDRALRSSSLFGM 188

Query: 206 FSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSS 265
           F++KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSS
Sbjct: 189 FAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSS 248

Query: 266 ASLYILHHLHKPEA 279
           ASLYILH+LHK E 
Sbjct: 249 ASLYILHNLHKGET 262

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807395|ref|XP_002871581.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata] gi|297317418|gb|EFH47840.1| structural constituent of ribosome [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/279 (67%), Positives = 216/279 (77%), Gaps = 17/279 (6%)

Query: 1   MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRT 60
           MAL + I +TP+S SVP    L   R      A+L  S S  S+ A++S+     V+  T
Sbjct: 1   MALCSLISATPISVSVPRYLVLPTRRRFHLPLATLGSSSSPESS-ASSSTPTSIPVNGNT 59

Query: 61  PPSKPFAESSRQHDPSFNYARANPAGDSPLG-FFRSIESNIERLIFDFRFLALLAVGGSL 119
            PS            S+   R +   +SP   FFRS ESN+ER+IFDFRFLALLAVGGSL
Sbjct: 60  VPS------------SYGTTRKD---NSPFAQFFRSTESNVERIIFDFRFLALLAVGGSL 104

Query: 120 AGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYG 179
           AGSLLCFLNGC+YIV+AYKVYWT+C KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYG
Sbjct: 105 AGSLLCFLNGCVYIVEAYKVYWTNCAKGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYG 164

Query: 180 LFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKM 239
           LFIS+ P +V P  DRAL+ SSLFGMF++KERPKWMKISSLDELKTKVGHVIVMILLVKM
Sbjct: 165 LFISHSPHDVPPESDRALRSSSLFGMFAMKERPKWMKISSLDELKTKVGHVIVMILLVKM 224

Query: 240 FERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           FERSKMVTIATG+DLLSYS+CIFLSSASLYILH+LHK E
Sbjct: 225 FERSKMVTIATGLDLLSYSVCIFLSSASLYILHNLHKGE 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819726|emb|CAN69229.1| hypothetical protein VITISV_007114 [Vitis vinifera]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 162/173 (93%), Positives = 171/173 (98%)

Query: 106 DFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYL 165
           DFRFLALLAVGGSLAGSLLCFLNGC+YI+DAYKVYWTSCVKG+HTGKMVLRLVEAIDVYL
Sbjct: 23  DFRFLALLAVGGSLAGSLLCFLNGCVYIIDAYKVYWTSCVKGIHTGKMVLRLVEAIDVYL 82

Query: 166 AGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKT 225
           AGTVMLIFGMGLYGLFISNVPP+V P+VDRALKGSSLFGMF+LKERPKWMKISSLDELKT
Sbjct: 83  AGTVMLIFGMGLYGLFISNVPPDVPPSVDRALKGSSLFGMFALKERPKWMKISSLDELKT 142

Query: 226 KVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPE 278
           KVGHVIVMILLVKMFERSKMVTIATGMDLLSYS+CIFLSSASLYIL++LHK E
Sbjct: 143 KVGHVIVMILLVKMFERSKMVTIATGMDLLSYSVCIFLSSASLYILNNLHKAE 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212723806|ref|NP_001131494.1| uncharacterized protein 114 precursor [Zea mays] gi|194691688|gb|ACF79928.1| unknown [Zea mays] gi|414887929|tpg|DAA63943.1| TPA: uncharacterized protein 114 [Zea mays]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 189/227 (83%), Gaps = 3/227 (1%)

Query: 57  SSRTP-PSKPFAESSRQHDPSFNYARANPAGDSPLGFFRS--IESNIERLIFDFRFLALL 113
           SS +P PS   A SS+           N    +P    +S  +E+ +ER+IFDFRFLALL
Sbjct: 39  SSASPAPSGEVASSSQDGRGYGTVGGPNGHAIAPATVTKSTAVETTVERVIFDFRFLALL 98

Query: 114 AVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIF 173
           AV GSLAGS+LCFLNGC++I +AY+VYW+SCVKGVHTG+MVL++VEAIDVYLAGTVMLIF
Sbjct: 99  AVAGSLAGSVLCFLNGCVFIKEAYQVYWSSCVKGVHTGQMVLKVVEAIDVYLAGTVMLIF 158

Query: 174 GMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVM 233
           GMGLYGLFISN P +VAP  DRAL GSSLFGMF+LKERPKWM I+SLDELKTKVGHVIVM
Sbjct: 159 GMGLYGLFISNAPASVAPESDRALSGSSLFGMFALKERPKWMNITSLDELKTKVGHVIVM 218

Query: 234 ILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHKPEAE 280
           ILLVKMFE+SKMVTIATG+DLLSYSICIFLSSASLYILH+LHK + E
Sbjct: 219 ILLVKMFEKSKMVTIATGLDLLSYSICIFLSSASLYILHNLHKGDHE 265

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2173239	262	AT5G13720 [Arabidopsis thalian	0.685	0.732	0.777	9.5e-80
TAIR|locus:2140411	273	AT4G19390 "AT4G19390" [Arabido	0.632	0.648	0.469	5.9e-41
UNIPROTKB|Q484I7	164	CPS_1797 "Putative membrane pr	0.235	0.402	0.409	9.9e-14
TIGR_CMR|CPS_1797	164	CPS_1797 "putative membrane pr	0.235	0.402	0.409	9.9e-14
UNIPROTKB|Q5HU78	168	CJE1166 "Membrane protein, put	0.239	0.398	0.343	1.3e-09
TIGR_CMR|CJE_1166	168	CJE_1166 "membrane protein, pu	0.239	0.398	0.343	1.3e-09
UNIPROTKB|Q749U4	155	GSU2648 "Uncharacterized prote	0.142	0.258	0.404	1.5e-06
TIGR_CMR|GSU_2648	155	GSU_2648 "conserved hypothetic	0.142	0.258	0.404	1.5e-06

TAIR|locus:2173239 AT5G13720 [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
 Identities = 150/193 (77%), Positives = 165/193 (85%)

Query:    87 DSPLG-FFRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCV 145
             DSP   FFRS ESN+ER+IFDFRF               CFLNGC+YIV+AYKVYWT+C 
Sbjct:    69 DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query:   146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
             KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct:   129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGM 188

Query:   206 FSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSS 265
             F++KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATG+DLLSYS+CIFLSS
Sbjct:   189 FAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSS 248

Query:   266 ASLYILHHLHKPE 278
             ASLYILH+LHK E
Sbjct:   249 ASLYILHNLHKGE 261

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2140411 AT4G19390 "AT4G19390" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 86/183 (46%), Positives = 122/183 (66%)

Query:    93 FRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCVKGVHTGK 152
             F ++E  IE++I+  RF               CF+ GC+Y+VD++  Y       V+ GK
Sbjct:    94 FEALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGK 147

Query:   153 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERP 212
             ++  LVEAID+YL GTVML+FG+GLY LFISN+  + +   D     SSLFGMF+LKERP
Sbjct:   148 VIFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERP 207

Query:   213 KWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILH 272
             +W+++ S+ ELKTK+GHVIVM+LL+ +F++SK V I +  DLL  S+ IF SSA L++L 
Sbjct:   208 QWLEVKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLS 267

Query:   273 HLH 275
              L+
Sbjct:   268 RLN 270

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q484I7 CPS_1797 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 117 (46.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query:   207 SLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSA 266
             S K + K  +ISS+DELK K+G VIVMIL++K+F     +     +++L  +I + L S 
Sbjct:    96 SNKHQSKAFQISSIDELKAKLGKVIVMILVIKLFSYLVEIKPQNIVEILYMAIIVLLVSV 155

Query:   267 SLYILH 272
             SL++ H
Sbjct:   156 SLWLGH 161

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_1797 CPS_1797 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 117 (46.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query:   207 SLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSSA 266
             S K + K  +ISS+DELK K+G VIVMIL++K+F     +     +++L  +I + L S 
Sbjct:    96 SNKHQSKAFQISSIDELKAKLGKVIVMILVIKLFSYLVEIKPQNIVEILYMAIIVLLVSV 155

Query:   267 SLYILH 272
             SL++ H
Sbjct:   156 SLWLGH 161

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q5HU78 CJE1166 "Membrane protein, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 108 (43.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:   206 FSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSS 265
             F   ++ K +++ SLD+LK K+  VI+M+L+V  F+R   +  AT +D+   +  I    
Sbjct:    98 FKQTKQSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALC 157

Query:   266 ASLYILH 272
               LY LH
Sbjct:   158 VGLYFLH 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1166 CJE_1166 "membrane protein, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 108 (43.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query:   206 FSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSICIFLSS 265
             F   ++ K +++ SLD+LK K+  VI+M+L+V  F+R   +  AT +D+   +  I    
Sbjct:    98 FKQTKQSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALC 157

Query:   266 ASLYILH 272
               LY LH
Sbjct:   158 VGLYFLH 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q749U4 GSU2648 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query:   146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP 187
             KG+ +  +VL  +E +D +L GTV+ I  + LY LFI +  P
Sbjct:    51 KGMKS--LVLSFIEVVDTFLLGTVLYIISLALYELFIDDTVP 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2648 GSU_2648 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query:   146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP 187
             KG+ +  +VL  +E +D +L GTV+ I  + LY LFI +  P
Sbjct:    51 KGMKS--LVLSFIEVVDTFLLGTVLYIISLALYELFIDDTVP 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
pfam03350	124	pfam03350, UPF0114, Uncharacterized protein family	3e-40
COG2862	169	COG2862, COG2862, Predicted membrane protein [Func	4e-13

>gnl|CDD|217507 pfam03350, UPF0114, Uncharacterized protein family, UPF0114

 Score =  135 bits (342), Expect = 3e-40
 Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 18/142 (12%)

Query: 103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAID 162
           LIF  R+L L AV G L GS+L FL GC+ +V  +   + + V  +    ++L ++E ID
Sbjct: 1   LIFASRWLVLPAVIGLLLGSVLLFLKGCVELVHLFIETFRAHVFTIDETDLILAVLELID 60

Query: 163 VYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDE 222
           ++L GT++LI G G Y LF+S +     P                  + P+W+ I SLD+
Sbjct: 61  LFLIGTLLLIVGFGGYELFVSKLDIAEHP------------------DLPEWLGIVSLDD 102

Query: 223 LKTKVGHVIVMILLVKMFERSK 244
           LK K+  VIV+IL V   +   
Sbjct: 103 LKQKLAGVIVVILSVHFLKVFL 124

Length = 124

>gnl|CDD|225417 COG2862, COG2862, Predicted membrane protein [Function unknown]

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 30/152 (19%)

Query: 94  RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTG-- 151
             +E  IERLIF  R+L L  V   L  +L+ F          +K  W   +  +     
Sbjct: 2   SMLEKIIERLIFASRWL-LAPVYLGLIVALVLFAYK------FFKEIW-HLLPNLFDMGE 53

Query: 152 -KMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKE 210
             ++L  +  +D+ L   ++++   G Y LF+S +                     + ++
Sbjct: 54  NDLILAALSLVDLLLVAGLLVMVSFGGYELFVSKLDI-------------------AEED 94

Query: 211 RPKWMKISSLDELKTKVGHVIVMILLVKMFER 242
           +P W+ I  L +LK K+   IV I  V + + 
Sbjct: 95  KPSWLGIVDLSDLKQKLAASIVAISSVHLLKV 126

Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PRK05208	168	hypothetical protein; Provisional	100.0
TIGR00645	167	HI0507 conserved hypothetical transmembrane protei	100.0
PF03350	124	UPF0114: Uncharacterized protein family, UPF0114;	100.0
COG2862	169	Predicted membrane protein [Function unknown]	100.0

>PRK05208 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=309.26  Aligned_cols=163  Identities=19%  Similarity=0.267  Sum_probs=152.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHH
Q 023596           93 FRSIESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVML  171 (280)
Q Consensus        93 ~~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLF-i~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLL  171 (280)
                      .+++|+.+|+++|+|||++ +||++++++++.+| ++++.|++|...+...     .++++++..++++||+||+|++|+
T Consensus         2 ~~~~e~~~E~~l~~sRwl~-~pv~~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lIDl~Lia~lLl   75 (168)
T PRK05208          2 IKRMERIIERLIFASRWLQ-APLYLGLSLALAVLVYKFFQELWHLLPHVFS-----LDESDLILVVLSLIDVVLVANLLV   75 (168)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999997 79999999999999 9999999988888765     778899999999999999999999


Q ss_pred             HHhhhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccch
Q 023596          172 IFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATG  251 (280)
Q Consensus       172 IF~~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~  251 (280)
                      ||++|+|||||||+|.+++                  +++|+||+++|+||||+||++|||||++|+|||++++++..++
T Consensus        76 Iv~~ggYElFISkid~~~~------------------~~~p~wL~~~~l~~LK~KL~~vIV~Is~V~llk~fl~~~~~~~  137 (168)
T PRK05208         76 MVIFSGYENFVSRLDIDGH------------------PDEPEWLGKVDASSLKVKLAASIVAISSIHLLKTFMNADNYSD  137 (168)
T ss_pred             HHHhhhHHHhhccCccccC------------------CCCCccceecCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH
Confidence            9999999999999997655                  5689999999999999999999999999999999999999999


Q ss_pred             hhHHHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596          252 MDLLSYSI---CIFLSSASLYILHHLHKPEA  279 (280)
Q Consensus       252 ~dLL~~~~---aIllsslaL~ll~Kl~~~~~  279 (280)
                      .+++|+.+   +++++++.+++++|+.++.|
T Consensus       138 ~~~~w~~~ihl~fv~s~~~~a~~d~l~~~~h  168 (168)
T PRK05208        138 NKLMWQVIIHLTFVVSALLMAYTDRLTRKSH  168 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999986   99999999999999998765

>TIGR00645 HI0507 conserved hypothetical transmembrane protein

Probab=100.00  E-value=2.8e-41  Score=294.03  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 023596           96 IESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFG  174 (280)
Q Consensus        96 iE~~iEr~L~~sR~l~llaVigsLlgsvlLF-i~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~  174 (280)
                      +|+.+|+++|+|||+ ++||++++++++.++ ++++.++++.+.+.     .+.++++++..++++||+||+|++|+||+
T Consensus         1 ~e~~~E~~l~~SRwl-l~pvy~gLi~a~~l~~~~f~~el~~~~~~~-----~~~~~~~~il~vl~lID~~Lia~lLlIv~   74 (167)
T TIGR00645         1 QENIIEKIIFASRWL-LAPIYLGLSLTLVILSYKFIKELWHLLINV-----NDMDENDLMLGVLNLVDVVMIAGLLVMVT   74 (167)
T ss_pred             ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            588999999999999 668888888777752 22223444433322     34678899999999999999999999999


Q ss_pred             hhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhH
Q 023596          175 MGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDL  254 (280)
Q Consensus       175 ~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~~dL  254 (280)
                      +|+|||||||+|.+++                  +++|+||+++|+||||+||++|||||++|+|||+|++.+..+..++
T Consensus        75 ~ggYElFISkid~~~~------------------~~~p~wL~~~~l~~LK~KL~~vIV~Is~I~lLk~fl~~~~~~~~~~  136 (167)
T TIGR00645        75 IGGYEIFVSKLDTRNH------------------PEQPEWLSHVDATVLKVKVSMSIVAISSIHLLQTFMNASNMPENTM  136 (167)
T ss_pred             hccHhHhhccCccccC------------------CCCCCceeecCHHHHHHHHHHHHHHHhHHHHHHHHHhhhhCCHHHH
Confidence            9999999999998765                  5689999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596          255 LSYSI---CIFLSSASLYILHHLHKPEA  279 (280)
Q Consensus       255 L~~~~---aIllsslaL~ll~Kl~~~~~  279 (280)
                      +|+.+   +++++++++++++|+.++.|
T Consensus       137 ~w~~~ih~~fv~s~~~~a~~d~~~~~~~  164 (167)
T TIGR00645       137 MWQVLIHLGFVVSAIALAYTDKILYSSN  164 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99986   99999999999999998654

This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.

>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes

Probab=100.00  E-value=9.3e-38  Score=259.06  Aligned_cols=124  Identities=41%  Similarity=0.709  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhceeecc
Q 023596          103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFI  182 (280)
Q Consensus       103 ~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~~GLYELFI  182 (280)
                      ++|+|||+++++|+|+++|+++||++|+.++++++.++++....+.++++++..+++++|+||+|++++||++|+|||||
T Consensus         1 ~l~~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFI   80 (124)
T PF03350_consen    1 LLFASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFAFGLYELFI   80 (124)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeE
Confidence            48999999999999999999999999999999999999986666778889999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhh
Q 023596          183 SNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSK  244 (280)
Q Consensus       183 Skid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl  244 (280)
                      |++|.+++                  +++|+||+++|+||||+||++|||||++|+|||+++
T Consensus        81 s~~~~~~~------------------~~~p~wL~i~s~~~LK~KL~~vIV~Il~V~~l~~~~  124 (124)
T PF03350_consen   81 SKLDIAEH------------------DDRPKWLGIRSLDDLKLKLGSVIVMILVVHFLKKFI  124 (124)
T ss_pred             eccccccc------------------CcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99987765                  468999999999999999999999999999999975

>COG2862 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4.3e-35  Score=255.46  Aligned_cols=162  Identities=24%  Similarity=0.348  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 023596           94 RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIF  173 (280)
Q Consensus        94 ~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF  173 (280)
                      +++|+++||+||++||+.+ ||+.+++.++.+|.+++.   +.+.+.+.+.. .+++.++++.++++||++|+|++++|+
T Consensus         2 ~~~e~~~e~~i~~SRwll~-pv~~gLi~al~lf~~~f~---~~i~~~~~~~~-~~~e~~lil~~l~liDl~Lva~lLvmv   76 (169)
T COG2862           2 SMLEKIIERLIFASRWLLA-PVYLGLIVALVLFAYKFF---KEIWHLLPNLF-DMGENDLILAALSLVDLLLVAGLLVMV   76 (169)
T ss_pred             CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHcccc-ccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999997775 888888888888887743   23333333332 245889999999999999999999999


Q ss_pred             hhhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 023596          174 GMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMD  253 (280)
Q Consensus       174 ~~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~~d  253 (280)
                      ++|+|||||||+|.++                   +++|+||++.|++|||+|++++||+|++|+|||+|++.+..++..
T Consensus        77 ~~g~YelFVskLd~~~-------------------~~~~~wL~~~d~~~LK~Kl~~sIV~IssV~~L~~fl~~~~~~~~~  137 (169)
T COG2862          77 SFGGYELFVSKLDIAE-------------------EDKPSWLGIVDLSDLKQKLAASIVAISSVHLLKVFLNAKNLSDNK  137 (169)
T ss_pred             HHhhHHHHHhhccccc-------------------ccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHhchhhCCchh
Confidence            9999999999998764                   257999999999999999999999999999999999999976767


Q ss_pred             HHHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596          254 LLSYSI---CIFLSSASLYILHHLHKPEA  279 (280)
Q Consensus       254 LL~~~~---aIllsslaL~ll~Kl~~~~~  279 (280)
                      ++||.+   ++++++..+.+.+|+++++|
T Consensus       138 ~~~~~~ihl~fv~sa~~~~~~dr~~~~~~  166 (169)
T COG2862         138 LMWFVIIHLTFVLSALYLAYKDRLEKKSH  166 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence            777754   89999999999999998876

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00