Citrus Sinensis ID: 023608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCSNPT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHccccccccccccccccccHHHHccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHcHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccHccccccHHHHHHHcccccHHHHHHHHHccccccccccccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsgasaasafpgvggaapnpfdfsamsgllndpsIKELAEQIAKDPAFNSMAEQLQKTLhganaeesipqfdttQYYSTMQQVMQNPQFMTMAERLGnalmqdpsmshmmesltnptkkdQIEERMAKikedpslkpildeiesggpsammKYWNDKDVLQKLGEAMglavggdattsadnagadeaeevgnedesivhhtasvgdaEGLKNALaagadkdeedsegrTALHFAcgygevcsnpt
Flexible Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAkikedpslkpiLDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHfacgygevcsnpt
Low Complexity Region (SEG)
MASPPTKDAPADKKAEGSTPKSEatsgsvrdsssspsgasaasafpgvggaapNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCSNPT
Disordered region (IsUnstruct)
******************************************************************************************************************************************************************************************KYWNDKDVLQKLGEAMGLA***********************************************************ALHFACGYGEVC****
Disordered Region (DISOPRED)
*******************************************************FDFSAMSGLLNDPSIKELAEQIAKDP*************************************MQ**QF**********************************************KPILDEIESGGPSAMMKYWNDKDVLQKLGEA****************************ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS***
Disordered Region (DISEMBL)
********************************************FPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA************RTALHFACGYGEVCSNPT
Disordered Region (DISPRO)
*************************************************GAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGL*********************************SVGDAEGLKNALAAGA*KD**DSEGRTALHFACGYGEVCS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCSNPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.860	0.704	0.615	2e-77

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/247 (61%), Positives = 185/247 (74%), Gaps = 6/247 (2%)

Query: 31  DSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQL 90
           + SS P  AS +S    + G   N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQL
Sbjct: 22  NKSSKPESASGSSTSSAMPGLNFNAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQL 81

Query: 91  QKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTN 150
           Q+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  +++ +N
Sbjct: 82  QRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSN 141

Query: 151 PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG-- 208
           P   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL+KLGEAMG+ V G  
Sbjct: 142 PETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGMPVAGLP 201

Query: 209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF 268
           D T SA+   A+E EE     ESIVH TAS+GD EGLK ALA+G +KDEEDSEGRTALHF
Sbjct: 202 DQTVSAEPEVAEEGEEE----ESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHF 257

Query: 269 ACGYGEV 275
           ACGYGE+
Sbjct: 258 ACGYGEL 264

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
359474945	358	PREDICTED: ankyrin repeat domain-contain	0.971	0.759	0.773	1e-114
37625031	354	putative ankyrin-repeat protein [Vitis a	0.825	0.652	0.829	1e-112
255546638	345	ankyrin repeat domain protein, putative	0.939	0.762	0.745	1e-111
327344119	371	putative PDF1-interacting protein 2, par	0.878	0.663	0.793	1e-110
224132484	308	predicted protein [Populus trichocarpa]	0.821	0.746	0.796	1e-109
449444443	359	PREDICTED: ankyrin repeat domain-contain	0.960	0.749	0.705	1e-109
359806300	352	uncharacterized protein LOC100784610 [Gl	0.978	0.778	0.712	1e-108
359806322	350	uncharacterized protein LOC100797622 [Gl	0.957	0.765	0.706	1e-107
118485011	366	unknown [Populus trichocarpa]	0.796	0.609	0.820	1e-107
255642139	350	unknown [Glycine max]	0.957	0.765	0.706	1e-107

>gi|359474945|ref|XP_002283498.2| PREDICTED: ankyrin repeat domain-containing protein 2-like [Vitis vinifera] gi|297744439|emb|CBI37701.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/283 (77%), Positives = 234/283 (82%), Gaps = 11/283 (3%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSA 60
           MAS   KD PAD+K  GS   S++ S S    S     A+AAS  PG G  A NPFDFSA
Sbjct: 1   MASNSDKDTPADEKT-GSAENSKSDSSSGESHSEQRRAAAAAS-VPGAGLPA-NPFDFSA 57

Query: 61  MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
           M+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESIPQFDT QYYSTMQQVMQ
Sbjct: 58  MTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESIPQFDTQQYYSTMQQVMQ 117

Query: 121 NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG 180
           NPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+IKEDPSLKPILDEIE+G
Sbjct: 118 NPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMARIKEDPSLKPILDEIETG 177

Query: 181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHH----- 235
           GP+AMM+YWNDKDVLQKLGEAMGLAV GDA  SADN+G DEAEE+ NEDESI HH     
Sbjct: 178 GPAAMMRYWNDKDVLQKLGEAMGLAVSGDAAASADNSGLDEAEELANEDESIAHHHSESI 237

Query: 236 ---TASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
              TASVGD EGLKNALA+GADKDEEDSEGRTALHFACGYGEV
Sbjct: 238 VHDTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37625031|gb|AAQ96339.1| putative ankyrin-repeat protein [Vitis aestivalis]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/240 (82%), Positives = 211/240 (87%), Gaps = 9/240 (3%)

Query: 44  AFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESI 103
           + PG  G   NPFDFSAM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESI
Sbjct: 38  SVPG-AGLPTNPFDFSAMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESI 96

Query: 104 PQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAK 163
           PQFDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+
Sbjct: 97  PQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMAR 156

Query: 164 IKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAE 223
           IKEDPSLKPILDEIE+GGP+AMM+YWNDKDVLQKLGEAMGLAV GDA  SADN+G DEAE
Sbjct: 157 IKEDPSLKPILDEIETGGPAAMMRYWNDKDVLQKLGEAMGLAVSGDAAASADNSGLDEAE 216

Query: 224 EVGNEDESIVHH--------TASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           E+ NEDESI HH        TASVGD EGLKNALA+GADKDEEDSEGRTALHFACGYGEV
Sbjct: 217 ELANEDESIAHHHSESIVHDTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEV 276

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546638|ref|XP_002514378.1| ankyrin repeat domain protein, putative [Ricinus communis] gi|223546475|gb|EEF47974.1| ankyrin repeat domain protein, putative [Ricinus communis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/279 (74%), Positives = 228/279 (81%), Gaps = 16/279 (5%)

Query: 1   MASPPTKDAPADKK-AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFS 59
           MAS   KD P+D+K A+  T   E+ SG  R   S   G               NPFDFS
Sbjct: 1   MASNSNKDVPSDEKTAKPETSSGESQSGQRRSPPSPGPGVVP------------NPFDFS 48

Query: 60  AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHG---ANAEESIPQFDTTQYYSTMQ 116
           AM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKTLHG   A AEESIPQFD+ QYYSTMQ
Sbjct: 49  AMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTLHGVGAAAAEESIPQFDSQQYYSTMQ 108

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNPQFMTMAERLGNALMQDPSMS M+ESLTNP+ KDQIEERMA+IKEDPSLKPIL+E
Sbjct: 109 QVMQNPQFMTMAERLGNALMQDPSMSQMLESLTNPSHKDQIEERMAQIKEDPSLKPILEE 168

Query: 177 IESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236
           IESGGP+AMM+YWND+DVL+KLGEAMGLAV  +A +SA+N G +EAEE GNEDESIVH+ 
Sbjct: 169 IESGGPAAMMRYWNDQDVLKKLGEAMGLAVSEEAASSAENPGQEEAEEAGNEDESIVHNC 228

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           ASVGD EGLK ALA+GADKDEEDSEGRTALHFACGYGEV
Sbjct: 229 ASVGDIEGLKAALASGADKDEEDSEGRTALHFACGYGEV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327344119|gb|AEA50964.1| putative PDF1-interacting protein 2, partial [Gossypium barbadense]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 214/247 (86%), Gaps = 1/247 (0%)

Query: 32  SSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQ 91
           S  + +GA   +A PG G   PNPFDFSAMSGLLNDPSIKELAEQIAKDP+FN MAEQ  
Sbjct: 50  SQPAQAGAFPPNAMPGPGFVPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQPT 109

Query: 92  KTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNP 151
           KT  GA AEE+ PQFD  QYYSTMQQVMQNPQFMTMAERLGNALMQDP+MS M++SL NP
Sbjct: 110 KTFQGAAAEETTPQFDPQQYYSTMQQVMQNPQFMTMAERLGNALMQDPAMSTMLDSLANP 169

Query: 152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDAT 211
            +KDQIEERMA+IKEDPSLKPIL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV GDA 
Sbjct: 170 QQKDQIEERMARIKEDPSLKPILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVTGDAA 229

Query: 212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271
           TSA N+ ADE +E GNEDESIVHH ASVGD EGLK AL++GADKDEEDSEGRTALHFACG
Sbjct: 230 TSAGNSAADEEDEAGNEDESIVHHCASVGDVEGLKTALSSGADKDEEDSEGRTALHFACG 289

Query: 272 YGEV-CS 277
           YGEV C+
Sbjct: 290 YGEVKCT 296

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132484|ref|XP_002328292.1| predicted protein [Populus trichocarpa] gi|222837807|gb|EEE76172.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/236 (79%), Positives = 210/236 (88%), Gaps = 6/236 (2%)

Query: 40  SAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANA 99
           SAA+ FP      PNPFDFSAM+GLLNDPSIKELAEQI+KDP+FN MAEQLQKT  GA A
Sbjct: 1   SAAAGFP------PNPFDFSAMTGLLNDPSIKELAEQISKDPSFNQMAEQLQKTFQGAPA 54

Query: 100 EESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEE 159
           E++IP FDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ES +NP++KDQIEE
Sbjct: 55  EDAIPNFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSQMLESFSNPSQKDQIEE 114

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGA 219
           RM +I+EDPSLKPIL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV  +A TS + +G 
Sbjct: 115 RMTRIREDPSLKPILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGH 174

Query: 220 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           +E EE GNEDES+VHH ASVGD EGLKNALA+GADKDEEDSEGRTALHF+CGYGEV
Sbjct: 175 EEVEEAGNEDESVVHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEV 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444443|ref|XP_004139984.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus] gi|449475676|ref|XP_004154520.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/278 (70%), Positives = 225/278 (80%), Gaps = 9/278 (3%)

Query: 6   TKDAPADKK--------AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFD 57
           TKD  AD+K        A+  T KSEA+      +   P       A P  G   PNPFD
Sbjct: 5   TKDVAADEKTALSETQSAKSETSKSEASKSETSSAEQQPDKPKPTPAAPHEGEFPPNPFD 64

Query: 58  FSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQ 117
           FSAM+GLLNDPSI+ELA QIAKDPAFN MA QLQKT  GA+A++S PQFDT QYYSTMQQ
Sbjct: 65  FSAMTGLLNDPSIQELASQIAKDPAFNQMASQLQKTFQGASAQQSTPQFDTQQYYSTMQQ 124

Query: 118 VMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEI 177
           VMQNPQFMTMAERLGNALMQDPSMS M+E+  NP+ K+Q+EERMA+IKEDPSLKPILDEI
Sbjct: 125 VMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEI 184

Query: 178 ESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTA 237
           E+GGP+AMM+YWND+DVL+KLGEAMG AV GDA  +A+++ AD++EEVGN+DES+VH TA
Sbjct: 185 ETGGPAAMMRYWNDRDVLKKLGEAMGFAVYGDA-ANAESSAADDSEEVGNDDESVVHQTA 243

Query: 238 SVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           SVGDAEGLKNALAAGA+KDEEDSEGRTALHFACGYGE 
Sbjct: 244 SVGDAEGLKNALAAGANKDEEDSEGRTALHFACGYGET 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806300|ref|NP_001241477.1| uncharacterized protein LOC100784610 [Glycine max] gi|255646471|gb|ACU23714.1| unknown [Glycine max]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/275 (71%), Positives = 223/275 (81%), Gaps = 1/275 (0%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSA 60
           MAS   KD PAD KA     K+     S +DS +     +     PG  G   NPFD SA
Sbjct: 1   MASDSKKDFPADDKAGTEESKTSKDETSSKDSPAEQRATATFGPRPGPAGHPGNPFDLSA 60

Query: 61  MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
           MSGLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA  +++IP FD  QY+STMQQVMQ
Sbjct: 61  MSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGA-PQDAIPSFDNQQYFSTMQQVMQ 119

Query: 121 NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG 180
           NP FMTMAERLGNALMQDPSMS M+ES +NP+ KDQ+EERMA+IKEDPSLK IL+EIE+G
Sbjct: 120 NPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMARIKEDPSLKHILEEIETG 179

Query: 181 GPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG 240
           GP+AMM+YWN+++VLQKLG+AMGLA  GDA  SA+N+GADE E++GNEDESIVHHTASVG
Sbjct: 180 GPAAMMRYWNNEEVLQKLGQAMGLANSGDAGASAENSGADETEDLGNEDESIVHHTASVG 239

Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           D EGLKNALA+GADKDEEDSEGRTALHFACGYGEV
Sbjct: 240 DVEGLKNALASGADKDEEDSEGRTALHFACGYGEV 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806322|ref|NP_001241225.1| uncharacterized protein LOC100797622 [Glycine max] gi|255639193|gb|ACU19895.1| unknown [Glycine max]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/279 (70%), Positives = 227/279 (81%), Gaps = 11/279 (3%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASA----ASAFPGVGGAAPNPF 56
           MAS   KD PAD KA  +  K+     S +DS ++    +A    A+ FPG      NPF
Sbjct: 1   MASDSKKDFPADDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPG------NPF 54

Query: 57  DFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQ 116
           DFSAMSGLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA  ++++P FD  QY+STMQ
Sbjct: 55  DFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGA-PQDAMPSFDNQQYFSTMQ 113

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNP FMTMAERLGNALMQDPSMS M+ES +NP+ KDQ+EERM +IKEDPSLK IL+E
Sbjct: 114 QVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEE 173

Query: 177 IESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236
           IE+GGP+AMM+YWND++VL+KLG+AMGLA  GD   SA+N+GADE E++GNEDESIVHHT
Sbjct: 174 IETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDLGNEDESIVHHT 233

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           ASVGD EGLKNALAAGADKDEEDSEGRTALHFACGYGEV
Sbjct: 234 ASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485011|gb|ABK94370.1| unknown [Populus trichocarpa]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/223 (82%), Positives = 203/223 (91%)

Query: 53  PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYY 112
           P+PFDFSAM+GLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA AE++IP FDT QYY
Sbjct: 66  PSPFDFSAMTGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGATAEDAIPNFDTQQYY 125

Query: 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP 172
           STMQQVMQNPQFMTMAE LG ALMQDPSMS M+ES TNP++KDQIEERM +I+EDPSLKP
Sbjct: 126 STMQQVMQNPQFMTMAEHLGTALMQDPSMSQMLESFTNPSQKDQIEERMTRIREDPSLKP 185

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESI 232
           IL+EIESGGP+AMM+YWNDKDVLQKLGEAMGLAV  +A TS + +G +EAEE GNEDES+
Sbjct: 186 ILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGHEEAEEAGNEDESV 245

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           VHH ASVGD EGLKNALA+GADKDEEDSEGRTALHF+CGYGEV
Sbjct: 246 VHHCASVGDVEGLKNALASGADKDEEDSEGRTALHFSCGYGEV 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642139|gb|ACU21334.1| unknown [Glycine max]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/279 (70%), Positives = 226/279 (81%), Gaps = 11/279 (3%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASA----ASAFPGVGGAAPNPF 56
           MAS   KD PAD KA  +  K+     S +DS ++    +A    A+ FPG      NPF
Sbjct: 1   MASDSKKDFPADDKAGTAENKASKDETSSKDSPAAQRATTATSGPATGFPG------NPF 54

Query: 57  DFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQ 116
           DFSAMSGLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA  ++++P FD  QY+STMQ
Sbjct: 55  DFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGA-PQDAMPSFDNQQYFSTMQ 113

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNP FMTMAERLGNALMQDPSMS M+ES +NP+ KDQ+EERM +IKEDPSLK IL+E
Sbjct: 114 QVMQNPNFMTMAERLGNALMQDPSMSAMLESFSNPSNKDQLEERMTRIKEDPSLKHILEE 173

Query: 177 IESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236
           IE+GGP+AMM+YWND++VL+KLG+AMGLA  GD   SA+N+GADE E+ GNEDESIVHHT
Sbjct: 174 IETGGPAAMMRYWNDEEVLRKLGQAMGLANSGDVGASAENSGADETEDSGNEDESIVHHT 233

Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
           ASVGD EGLKNALAAGADKDEEDSEGRTALHFACGYGEV
Sbjct: 234 ASVGDVEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.785	0.639	0.693	9.7e-80

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 156/225 (69%), Positives = 184/225 (81%)

Query:    54 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYS 113
             N FDFS M+G+LNDPSIKELAEQIAKDP+FN +AEQLQ+++   + E  +P FD  QY  
Sbjct:    49 NAFDFSGMAGILNDPSIKELAEQIAKDPSFNQLAEQLQRSVPTGSHEGGLPNFDPQQYMQ 108

Query:   114 TMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPI 173
             TMQQVM+NP+F TMAERLGNAL+QDP MS  +E+L NP   +Q  ERMA++KEDP LKPI
Sbjct:   109 TMQQVMENPEFRTMAERLGNALVQDPQMSPFLEALGNPAASEQFAERMAQMKEDPELKPI 168

Query:   174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIV 233
             L EI++GGPSAMMKYWNDKDVL KLGEAMG+AVG D T +A+    +EAEE G E+ESIV
Sbjct:   169 LAEIDAGGPSAMMKYWNDKDVLAKLGEAMGIAVGADQTVAAE---PEEAEE-GEEEESIV 224

Query:   234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV-CS 277
             H TAS+GD EGLK ALA+G +KDEEDSEGRTALHFACGYGEV C+
Sbjct:   225 HQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFACGYGEVRCA 269

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
            +  + +H  AS G  E +K  L  GAD + +D++GRT LH A   G
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG 51

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           + +H  A  G+ E +K  L  GAD + +D +G TALH A   G
Sbjct: 30  TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNG 72

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GAD      N+  + +H  A  G  E +K  L  GAD +  D +G T LH A   G
Sbjct: 28  ENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG 84

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GAD       +  + +H  A  G+ + +K  L  GAD +  D +GRT LH A   G
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 213 SADNAGADEAEEVGNE---DESIVH-------HTASVGDAEGLKNALAAGADKDEEDSEG 262
           + +N  A     +  E   D  + H         A+ GDA G +  L  GAD +  D +G
Sbjct: 56  ATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDG 115

Query: 263 RTALHFACGYGEV 275
           RT LH AC  G V
Sbjct: 116 RTPLHIACANGHV 128

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA 269
             G  +         + +H  A  G  E ++  L  G D +  DS+G TAL  A
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           + +H  A  G  E +K  L  G D +  D +G TALH A   G
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251
           K+ LQ   E   L VG       DN G    E       S +   AS G+A  L+  L A
Sbjct: 495 KNFLQHHKELHDLNVG---DLLGDNGG----EHDDPNMASNLLTVASTGNAALLEELLKA 547

Query: 252 GADKDEEDSEGRTALHFACGYG-EVC 276
             D D  DS+GRT LH A   G E C
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDC 573

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.49
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.43
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.42
PHA02743	166	Viral ankyrin protein; Provisional	99.41
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.34
PHA02791	284	ankyrin-like protein; Provisional	99.34
PHA02743	166	Viral ankyrin protein; Provisional	99.34
PHA02795	437	ankyrin-like protein; Provisional	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
PHA02741	169	hypothetical protein; Provisional	99.3
PHA02791	284	ankyrin-like protein; Provisional	99.29
PHA02874	434	ankyrin repeat protein; Provisional	99.29
PHA02946	446	ankyin-like protein; Provisional	99.29
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.28
PHA02875	413	ankyrin repeat protein; Provisional	99.28
PHA02878	477	ankyrin repeat protein; Provisional	99.28
PHA02741	169	hypothetical protein; Provisional	99.27
PHA03095	471	ankyrin-like protein; Provisional	99.26
PHA02884	300	ankyrin repeat protein; Provisional	99.26
PHA02736	154	Viral ankyrin protein; Provisional	99.26
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.26
KOG0508	615	consensus Ankyrin repeat protein [General function	99.25
PHA02798	489	ankyrin-like protein; Provisional	99.25
PHA02859	209	ankyrin repeat protein; Provisional	99.24
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.24
PHA02884	300	ankyrin repeat protein; Provisional	99.23
PHA02859	209	ankyrin repeat protein; Provisional	99.23
PHA03095	471	ankyrin-like protein; Provisional	99.22
KOG0514	452	consensus Ankyrin repeat protein [General function	99.22
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.21
PHA03100	480	ankyrin repeat protein; Provisional	99.21
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.21
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.2
PHA02875	413	ankyrin repeat protein; Provisional	99.2
PHA02989	494	ankyrin repeat protein; Provisional	99.18
PHA02917	661	ankyrin-like protein; Provisional	99.18
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.18
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.15
PHA02946	446	ankyin-like protein; Provisional	99.15
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.15
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.14
PHA02874	434	ankyrin repeat protein; Provisional	99.14
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.13
PHA03100	480	ankyrin repeat protein; Provisional	99.11
PHA02798	489	ankyrin-like protein; Provisional	99.09
PHA02878	477	ankyrin repeat protein; Provisional	99.08
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.07
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.06
PHA02876	682	ankyrin repeat protein; Provisional	99.06
KOG0508	615	consensus Ankyrin repeat protein [General function	99.06
PHA02989	494	ankyrin repeat protein; Provisional	99.03
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.02
PHA02876	682	ankyrin repeat protein; Provisional	98.98
PHA02917	661	ankyrin-like protein; Provisional	98.97
PHA02792	631	ankyrin-like protein; Provisional	98.94
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.91
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.87
PHA02730	672	ankyrin-like protein; Provisional	98.87
PHA02736	154	Viral ankyrin protein; Provisional	98.86
PHA02730	672	ankyrin-like protein; Provisional	98.86
PHA02795	437	ankyrin-like protein; Provisional	98.85
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.84
KOG0510	929	consensus Ankyrin repeat protein [General function	98.84
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.81
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.79
PHA02792	631	ankyrin-like protein; Provisional	98.78
KOG0510	929	consensus Ankyrin repeat protein [General function	98.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG0514	452	consensus Ankyrin repeat protein [General function	98.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.71
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.61
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.56
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.52
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.44
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.32
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.31
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.3
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.28
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.21
KOG0522	560	consensus Ankyrin repeat protein [General function	98.2
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.95
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.95
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.88
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	97.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.65
KOG0511	516	consensus Ankyrin repeat protein [General function	97.54
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.35
KOG2384	223	consensus Major histocompatibility complex protein	97.35
KOG0511	516	consensus Ankyrin repeat protein [General function	97.18
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	97.16
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.0
smart00727	41	STI1 Heat shock chaperonin-binding motif.	96.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.87
KOG2505	591	consensus Ankyrin repeat protein [General function	96.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.43
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.42
KOG0553	304	consensus TPR repeat-containing protein [General f	96.34
PF13606	30	Ank_3: Ankyrin repeat	96.3
smart00727	41	STI1 Heat shock chaperonin-binding motif.	96.26
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.08
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	95.91
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.84
KOG0522	560	consensus Ankyrin repeat protein [General function	94.96
KOG2384	223	consensus Major histocompatibility complex protein	94.81
PF06757	179	Ins_allergen_rp: Insect allergen related repeat, n	94.01
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	93.43
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	92.75
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	91.84
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	89.94
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	88.97
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	84.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	83.78
PF09280	59	XPC-binding: XPC-binding domain; InterPro: IPR0153	82.26

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=3.9e-15  Score=104.97  Aligned_cols=55  Identities=25%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             HHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          215 DNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       215 Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      |++.| ++++.+|..|.||||+||.+|+.++|++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46666 89999999999999999999999999999999999999999999999997

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=8.8e-14  Score=119.62  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.+|..+     .-+..+++.+|+++|+.|+.+|+.|.||||.|+..|.++++++||..|+.+|.+|+.|+||||+|
T Consensus       105 ~G~T~LHyAa-----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  105 GGQTCLHYAA-----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             CCcceehhhh-----cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            3344556555     66788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      ...||.+
T Consensus       180 l~e~~~d  186 (226)
T KOG4412|consen  180 LAEGHPD  186 (226)
T ss_pred             HhccCch
Confidence            7777765

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.8e-13  Score=116.60  Aligned_cols=83  Identities=22%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAG-ADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH  267 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~-gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH  267 (280)
                      ...+..+|..+     +.|..++|+.|+.+ |+|+|.....|+|+||||+.+|+.+|+++|+++|+.|+.+|+.|.||||
T Consensus        70 daGWtPlhia~-----s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplH  144 (226)
T KOG4412|consen   70 DAGWTPLHIAA-----SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLH  144 (226)
T ss_pred             ccCCchhhhhh-----hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhH
Confidence            33445566666     88899999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCC
Q 023608          268 FACGYGEVC  276 (280)
Q Consensus       268 ~Aa~~G~~e  276 (280)
                      -|+..|.++
T Consensus       145 RAAavGklk  153 (226)
T KOG4412|consen  145 RAAAVGKLK  153 (226)
T ss_pred             HHHhccchh
Confidence            999988765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.42  E-value=5.5e-13  Score=100.92  Aligned_cols=69  Identities=26%  Similarity=0.302  Sum_probs=63.1

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +..++.++++.|++.+.+++.    |+||||+||.+|+.+++++|+++|++++.+|.+|+||||+|+.+|+++
T Consensus         5 ~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    5 AQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             HHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            467888999999999998887    899999999999999999999999999999999999999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.41  E-value=1.2e-12  Score=111.48  Aligned_cols=100  Identities=11%  Similarity=0.009  Sum_probs=76.1

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCC---HHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG---DATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKN  247 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~---~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~  247 (280)
                      .+++.+.+.+.....+.......+|..+     ..+.   ..++++|++.|+++|.+| ..|.||||+|+.+|+.+++++
T Consensus        38 ~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa-----~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~  112 (166)
T PHA02743         38 EVAPFISGDGHLLHRYDHHGRQCTHMVA-----WYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEW  112 (166)
T ss_pred             HHHHHHhhcchhhhccCCCCCcHHHHHH-----HhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Confidence            3444444444333333344445555544     3333   245899999999999998 589999999999999999999


Q ss_pred             HHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          248 ALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       248 LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |+. .|++++.+|..|+||||+|+..++.+
T Consensus       113 Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~  142 (166)
T PHA02743        113 LCRQLGVNLGAINYQHETAYHIAYKMRDRR  142 (166)
T ss_pred             HHhccCCCccCcCCCCCCHHHHHHHcCCHH
Confidence            995 79999999999999999999988754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.34  E-value=2.3e-12  Score=127.39  Aligned_cols=70  Identities=23%  Similarity=0.211  Sum_probs=38.2

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ..|+..+|++|+++|+|++.+|.+|.|+||+|+..|+.-+|-+||.+|+|+|.+|.+|+||||||+.+|+
T Consensus       121 r~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             HcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc
Confidence            4444455555555555555555555555555555555555555555555555555555555555555544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.34  E-value=5.1e-12  Score=116.99  Aligned_cols=72  Identities=8%  Similarity=0.021  Sum_probs=62.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGR-TALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~-TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.++..|+ ||||+|+.+|+.+
T Consensus        70 ~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         70 TLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            56778888999999999998888999999999999999999999999998888888875 7888888888764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.34  E-value=2.5e-12  Score=109.52  Aligned_cols=84  Identities=14%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             hcCchhHHHHhHHhhhhccCCH----HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHH---HHHHHHcCCCCCCCC-
Q 023608          188 YWNDKDVLQKLGEAMGLAVGGD----ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEG---LKNALAAGADKDEED-  259 (280)
Q Consensus       188 ~~~d~~~l~~~~~~~g~~~g~~----~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~ei---vk~LL~~GAdvn~~D-  259 (280)
                      ...+..++++++     ..++.    ++++.|++.|++++.+|..|+||||+||.+|+.++   +++|+++|+++|.+| 
T Consensus        17 ~~~~~~~l~~a~-----~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~   91 (166)
T PHA02743         17 DEDEQNTFLRIC-----RTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL   91 (166)
T ss_pred             ccCCCcHHHHHH-----HcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC
Confidence            344556666666     44554    56667889999999999999999999999988654   899999999999998 


Q ss_pred             CCCCcHHHHHHHcCCCC
Q 023608          260 SEGRTALHFACGYGEVC  276 (280)
Q Consensus       260 ~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+||||+|+.+|+.+
T Consensus        92 ~~g~TpLh~A~~~g~~~  108 (166)
T PHA02743         92 GTGNTLLHIAASTKNYE  108 (166)
T ss_pred             CCCCcHHHHHHHhCCHH
Confidence            58999999999998754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.34  E-value=5.1e-12  Score=122.87  Aligned_cols=71  Identities=15%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..+..++++.|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|++
T Consensus       197 ~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        197 EPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             hcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCc
Confidence            44567999999999999999999999999999999999999999999999999999999999999999863

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=2.6e-12  Score=89.43  Aligned_cols=48  Identities=35%  Similarity=0.549  Sum_probs=40.0

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       229 g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |+||||+||..|+.+++++|+++|++++.+|.+|+||||+||.+|+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~   48 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNID   48 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHH
Confidence            689999999999999999999999999999999999999999999864

...

>PHA02741 hypothetical protein; Provisional

Probab=99.30  E-value=1.9e-11  Score=104.10  Aligned_cols=68  Identities=12%  Similarity=0.091  Sum_probs=63.2

Q ss_pred             HHHHHHHHhCCCCccccCC-CCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          209 DATTSADNAGADEAEEVGN-EDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       209 ~~~v~~Ll~~gadvn~~D~-~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .++++.|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++.+
T Consensus        77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence            4789999999999999985 99999999999999999999998 59999999999999999999988753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.29  E-value=1.4e-11  Score=114.02  Aligned_cols=81  Identities=21%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.+|..+     ..++.++++.|++.|++++..+  ++||||+|+..|+.++|++|+.+|++++.+|..|+||||+
T Consensus        28 ~~G~TpLh~Aa-----~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~  100 (284)
T PHA02791         28 VHGHSALYYAI-----ADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCCCcHHHHHH-----HcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            33445566555     6788899999999999998865  6899999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      ||.+|+.+
T Consensus       101 Aa~~g~~e  108 (284)
T PHA02791        101 AVDSGNMQ  108 (284)
T ss_pred             HHHcCCHH
Confidence            99999865

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.29  E-value=1.4e-11  Score=119.20  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus       133 ~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             HCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            455666777777777777777777777777777777777777777777777777777777777777666543

>PHA02946 ankyin-like protein; Provisional

Probab=99.29  E-value=1e-11  Score=121.42  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=50.6

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 023608          206 VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG  273 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G  273 (280)
                      ..+.++++.|++.|+++|.+|.+|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..+
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            34556777777777777777777777777777777777777777777777777777777777776654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.28  E-value=3.6e-11  Score=125.64  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHh-------------
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTAS-------------  238 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~-------------  238 (280)
                      .+++.+.+.|.+.-.......+.+|.++     ..|+.++++.|+++|+++|.+|.+|+||||+|+.             
T Consensus       539 ~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa-----~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~  613 (823)
T PLN03192        539 ALLEELLKAKLDPDIGDSKGRTPLHIAA-----SKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF  613 (823)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHH-----HcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhc
Confidence            4455556666555555555666777666     6688899999999999999999999999885554             


Q ss_pred             ------------------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          239 ------------------VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       239 ------------------~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                                        .|+.+++++|+++|+++|.+|.+|+||||+|+..||.+
T Consensus       614 ~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~  669 (823)
T PLN03192        614 ASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVD  669 (823)
T ss_pred             CcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence                              45556667788899999999999999999999998865

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.28  E-value=1.5e-11  Score=117.78  Aligned_cols=72  Identities=21%  Similarity=0.191  Sum_probs=49.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|++.|++++.++..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus       111 ~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e  182 (413)
T PHA02875        111 ILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA  182 (413)
T ss_pred             HhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            445666777777777777777777777777777777777777777777777777777777777777666644

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.28  E-value=1.7e-11  Score=120.14  Aligned_cols=95  Identities=22%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             HHHHHHcCChhhhhhhcC-chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          173 ILDEIESGGPSAMMKYWN-DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~-d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      +++.+.+.|...-..... ..+.+|.++     ..++.++++.|++.|++++..|..|+||||+|+..|+.+++++|++.
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~-----~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~  223 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYAT-----ENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN  223 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHH-----hCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            555666666554444444 556666655     66788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHc
Q 023608          252 GADKDEEDSEGRTALHFACGY  272 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~  272 (280)
                      |++++.+|..|+||||+|+.+
T Consensus       224 ga~in~~d~~g~TpLh~A~~~  244 (477)
T PHA02878        224 GASTDARDKCGNTPLHISVGY  244 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHh
Confidence            999999999999999999865

>PHA02741 hypothetical protein; Provisional

Probab=99.27  E-value=1.2e-11  Score=105.41  Aligned_cols=83  Identities=19%  Similarity=0.234  Sum_probs=71.1

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHH------hCCCCccccCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCCC
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADN------AGADEAEEVGNEDESIVHHTASVGD----AEGLKNALAAGADKDEE  258 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll------~~gadvn~~D~~g~TpLh~Aa~~G~----~eivk~LL~~GAdvn~~  258 (280)
                      ....+.+|.++     ..|+.++++.|+      ..|++++.+|..|+||||+||..|+    .+++++|+.+|++++.+
T Consensus        19 ~~g~t~Lh~Aa-----~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         19 SEGENFFHEAA-----RCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             cCCCCHHHHHH-----HcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            44556777666     678888888874      3468899999999999999999999    58999999999999999


Q ss_pred             CC-CCCcHHHHHHHcCCCC
Q 023608          259 DS-EGRTALHFACGYGEVC  276 (280)
Q Consensus       259 D~-~G~TPLH~Aa~~G~~e  276 (280)
                      |. +|+||||+|+..++.+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~  112 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHD  112 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHH
Confidence            85 9999999999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.26  E-value=2.2e-11  Score=118.02  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=78.2

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCC--HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG--DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA  250 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~--~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~  250 (280)
                      +++.+...|.....+.....+.+|.++     ..+.  ...++.|+..|+++|.+|..|+||||+|+..|+.++|++||+
T Consensus       204 i~~~Ll~~g~~~~~~d~~g~tpLh~Aa-----~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~  278 (471)
T PHA03095        204 IVRELIRAGCDPAATDMLGNTPLHSMA-----TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA  278 (471)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHH-----hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            344444444444444444555555554     2232  357888999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          251 AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       251 ~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +|++++.+|..|+||||+|+..|+.+
T Consensus       279 ~gad~n~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        279 LGADINAVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHHhCCHH
Confidence            99999999999999999999998864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.26  E-value=3.5e-11  Score=112.18  Aligned_cols=99  Identities=14%  Similarity=0.056  Sum_probs=78.0

Q ss_pred             HHHHHHHcCChhhhhhh----cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHH
Q 023608          172 PILDEIESGGPSAMMKY----WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLK  246 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~----~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk  246 (280)
                      ++++.+.+.|...-...    ....+.+|.++     ..+..+++++|+++|+|+|.. +..|.||||+|+..++.++++
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa-----~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAI-----DCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            34455555555443321    12334555544     667889999999999999986 468999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          247 NALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       247 ~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      +|+.+|++++.+|..|+||||+|+..++.
T Consensus       122 lLL~~GAdin~kd~~G~TpL~~A~~~~~~  150 (300)
T PHA02884        122 ILLSYGADINIQTNDMVTPIELALMICNN  150 (300)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHhCCh
Confidence            99999999999999999999999986543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.26  E-value=1.3e-11  Score=102.92  Aligned_cols=67  Identities=9%  Similarity=-0.050  Sum_probs=62.2

Q ss_pred             HHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          210 ATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +.++.|++.|++++.+| ..|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..|+.+
T Consensus        72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~  140 (154)
T PHA02736         72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK  140 (154)
T ss_pred             HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHH
Confidence            56889999999999998 599999999999999999999998 59999999999999999999988754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.26  E-value=2.1e-11  Score=104.55  Aligned_cols=94  Identities=19%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             HHHHcCChhhhhhhcCch-hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          175 DEIESGGPSAMMKYWNDK-DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       175 e~i~~~g~~al~~~~~d~-~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      ..|.+..+..+.....|+ +.+|..+     -.++.++|+.|+..|++++.+...|+||||-||.+.+.+|+.+||.+|+
T Consensus        80 ~~lL~e~an~vNtrD~D~YTpLHRAa-----Yn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga  154 (228)
T KOG0512|consen   80 QRLLSEKANHVNTRDEDEYTPLHRAA-----YNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA  154 (228)
T ss_pred             HHHHHhccccccccccccccHHHHHH-----hcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccC
Confidence            344444444443333333 4566666     6688899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcC
Q 023608          254 DKDEEDSEGRTALHFACGYG  273 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G  273 (280)
                      |||+....-+||||.||...
T Consensus       155 DVnA~t~g~ltpLhlaa~~r  174 (228)
T KOG0512|consen  155 DVNAQTKGLLTPLHLAAGNR  174 (228)
T ss_pred             cccccccccchhhHHhhccc
Confidence            99999999999999999654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=6.4e-12  Score=120.94  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=68.9

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      -.|+.++|++|+++|+|++..|..|+|.||+||++|+++|+++|++.|+|+|.++..|+|+||.++..||+|
T Consensus       126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             hcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            557889999999999999999999999999999999999999999999999999999999999999999986

>PHA02798 ankyrin-like protein; Provisional

Probab=99.25  E-value=3.1e-11  Score=118.80  Aligned_cols=106  Identities=14%  Similarity=-0.012  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC---CHHHH
Q 023608          169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG---DAEGL  245 (280)
Q Consensus       169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G---~~eiv  245 (280)
                      .-.++++.+.+.|...-.+.....+.++.+...+....+..++++.|++.|+|+|.+|..|+||||+|+..+   +.+++
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            344566777777776555555555666654432221223468999999999999999999999999999875   78999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          246 KNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       246 k~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ++|+++|++++.+|..|+||||+|+..++
T Consensus       129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798        129 LFMIENGADTTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCC
Confidence            99999999999999999999999999886

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.24  E-value=6.1e-11  Score=104.62  Aligned_cols=98  Identities=12%  Similarity=-0.010  Sum_probs=65.4

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHH-HHhcCCHHHHHHHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHH-TASVGDAEGLKNALA  250 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~-Aa~~G~~eivk~LL~  250 (280)
                      ++++.+.+.|...-.+.....+.+|.....   ..+..+++++|++.|++++.+|..|.||||. ++..++.+++++|++
T Consensus       104 eiv~~Ll~~gadin~~d~~G~TpLh~a~~~---~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~  180 (209)
T PHA02859        104 EILKILIDSGSSITEEDEDGKNLLHMYMCN---FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS  180 (209)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHh---ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence            444444555544433333334444443211   2345678888888888888888888888884 456778888888888


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHc
Q 023608          251 AGADKDEEDSEGRTALHFACGY  272 (280)
Q Consensus       251 ~GAdvn~~D~~G~TPLH~Aa~~  272 (280)
                      +|++++.+|..|+||||+|...
T Consensus       181 ~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        181 LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             cCCCCCCCCCCCCCHHHHHhhh
Confidence            8888888888888888888754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.24  E-value=8.9e-12  Score=114.02  Aligned_cols=70  Identities=23%  Similarity=0.329  Sum_probs=67.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ..|+..+++.|+..|+-||..+.-..||||+|+.+||.++|+.||+..+|||+.+..|+|||||||..|+
T Consensus        43 kegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   43 KEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             hcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence            7788899999999999999999999999999999999999999999999999999999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.23  E-value=2.9e-11  Score=112.79  Aligned_cols=72  Identities=14%  Similarity=0.009  Sum_probs=65.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccC----CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVG----NEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D----~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~-D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|+++|+|+|.++    ..|.||||+|+..++.+++++|+++|+++|.+ +..|+||||+|+.+|+++
T Consensus        42 ~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~e  118 (300)
T PHA02884         42 KFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLK  118 (300)
T ss_pred             HcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHH
Confidence            5577899999999999999974    68999999999999999999999999999996 468999999999998865

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.23  E-value=6.1e-11  Score=104.63  Aligned_cols=103  Identities=12%  Similarity=-0.001  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCChhhhhhh-cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHh--cCCHHHHHH
Q 023608          171 KPILDEIESGGPSAMMKY-WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTAS--VGDAEGLKN  247 (280)
Q Consensus       171 ~~i~e~i~~~g~~al~~~-~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~--~G~~eivk~  247 (280)
                      .++++.+.+.|....... ....+.+|..+..  ...+..++++.|+++|+++|.+|..|+||||+|+.  .++.+++++
T Consensus        66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~--~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~  143 (209)
T PHA02859         66 VEILKFLIENGADVNFKTRDNNLSALHHYLSF--NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKL  143 (209)
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh--CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHH
Confidence            455666666666554443 2344566654421  11245789999999999999999999999999875  468999999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHH-HHHcCCC
Q 023608          248 ALAAGADKDEEDSEGRTALHF-ACGYGEV  275 (280)
Q Consensus       248 LL~~GAdvn~~D~~G~TPLH~-Aa~~G~~  275 (280)
                      |+++|++++.+|..|+||||. |+..++.
T Consensus       144 Li~~gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859        144 LIDSGVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHcCCCcccccCCCCcHHHHHHHhcCCH
Confidence            999999999999999999995 4555553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.22  E-value=5.4e-11  Score=115.36  Aligned_cols=63  Identities=19%  Similarity=0.134  Sum_probs=41.2

Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          208 GDATTSADNAGADEAEEVGNEDESIVHHTASVG-DAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G-~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..++++.|++.|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|+||||+|+
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~  125 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL  125 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            556666666666666666666666666666666 366666666666666666666666666666

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.22  E-value=4e-11  Score=112.45  Aligned_cols=124  Identities=18%  Similarity=0.132  Sum_probs=100.3

Q ss_pred             hhcCcChHHHHHHHHHHhhcCCChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC
Q 023608          147 SLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG  226 (280)
Q Consensus       147 ~l~n~~~~~~~~~~l~~lk~dp~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D  226 (280)
                      ..++-++..-|...|++||.+.....+.+.+.-++-.+.....      ..+++.+.++.|..++|+.||+.|+|||+.|
T Consensus       297 ~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~------gQTALMLAVSHGr~d~vk~LLacgAdVNiQD  370 (452)
T KOG0514|consen  297 QQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH------GQTALMLAVSHGRVDMVKALLACGADVNIQD  370 (452)
T ss_pred             ccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh------cchhhhhhhhcCcHHHHHHHHHccCCCcccc
Confidence            3445566777888999999887766665555544433222111      3355667789999999999999999999999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          227 NEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       227 ~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+|.|+|.+||.+||++||++||.. ++|+...|.+|.|+|.+|-..||-|
T Consensus       371 dDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e  421 (452)
T KOG0514|consen  371 DDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE  421 (452)
T ss_pred             CCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence            9999999999999999999999985 6999999999999999999999865

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.21  E-value=3e-11  Score=127.60  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             hHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608          198 LGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS  277 (280)
Q Consensus       198 ~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~  277 (280)
                      +....++..|+..+|++|+++|+|++.+|+.|+||||.||..|+.+|+.+|+++|+++|+.|.+|.||||+|+.+|+++.
T Consensus       542 TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  542 TPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             chHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccch
Confidence            44445558899999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 023608          278 NP  279 (280)
Q Consensus       278 ~~  279 (280)
                      ..
T Consensus       622 ~k  623 (1143)
T KOG4177|consen  622 VK  623 (1143)
T ss_pred             hh
Confidence            53

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.21  E-value=5.6e-11  Score=115.64  Aligned_cols=72  Identities=15%  Similarity=-0.020  Sum_probs=68.0

Q ss_pred             ccCC--HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGG--DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~--~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+.  .++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+
T Consensus       224 ~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        224 CYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             HhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH
Confidence            5566  89999999999999999999999999999999999999999999999999999999999999888754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.21  E-value=3.5e-11  Score=125.73  Aligned_cols=72  Identities=18%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+.++++.|++.|+|+|.+|..|+||||+||.+|+.++|++|+++|+++|.+|.+|+||||+|+..||.+
T Consensus       534 ~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        534 STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            668889999999999999999999999999999999999999999999999999999999999999999865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.20  E-value=3.9e-11  Score=122.82  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +..|+.+.++.|++.|+++|.+|..|+||||+||.+|+.++|++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        90 a~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            3678899999999999999999999999999999999999999999999999999999999999999998864

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.20  E-value=9.9e-11  Score=112.16  Aligned_cols=100  Identities=15%  Similarity=0.033  Sum_probs=82.3

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.|...........+.+|.++     ..++.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~  190 (413)
T PHA02875        116 DIMKLLIARGADPDIPNTDKFSPLHLAV-----MMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS  190 (413)
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            4455555555554444444556666555     66888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC-cHHHHHHHcCCCC
Q 023608          252 GADKDEEDSEGR-TALHFACGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~~G~-TPLH~Aa~~G~~e  276 (280)
                      |++++..+..|. ||||+|+..|+.+
T Consensus       191 ga~~n~~~~~~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        191 GANIDYFGKNGCVAALCYAIENNKID  216 (413)
T ss_pred             CCCCCcCCCCCCchHHHHHHHcCCHH
Confidence            999999998874 8999999998865

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.18  E-value=8.8e-11  Score=115.75  Aligned_cols=68  Identities=16%  Similarity=0.096  Sum_probs=61.6

Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          208 GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+++++|+. ++++|.+|..|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+
T Consensus       236 ~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        236 EFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             chHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            3456666655 5999999999999999999999999999999999999999999999999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.18  E-value=1.1e-10  Score=119.41  Aligned_cols=103  Identities=12%  Similarity=0.004  Sum_probs=80.4

Q ss_pred             HHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCC---CC-----------CcHHHHH
Q 023608          171 KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGN---ED-----------ESIVHHT  236 (280)
Q Consensus       171 ~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~---~g-----------~TpLh~A  236 (280)
                      .++++.+.+.|...-.+.....+.++....   ...+..+++++|+++|++++.+|.   .|           .||||+|
T Consensus       116 ~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a---~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a  192 (661)
T PHA02917        116 VDLIKVLVEHGFDLSVKCENHRSVIENYVM---TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLY  192 (661)
T ss_pred             HHHHHHHHHcCCCCCccCCCCccHHHHHHH---ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHH
Confidence            345556666666655555555666664331   245788999999999999986653   34           5999999


Q ss_pred             Hh-----------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          237 AS-----------VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       237 a~-----------~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +.           +++.++|++|+++|++||.+|.+|+||||+|+..||++
T Consensus       193 ~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        193 IISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             HhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc
Confidence            86           56899999999999999999999999999999999864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.18  E-value=7.6e-11  Score=116.79  Aligned_cols=72  Identities=21%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             hccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      +..+..+++++|+++|+|||..+ .-+.|||||||++|++.+|.+|+++|||++.+|.+|.||||+|+.+||+
T Consensus        86 AiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~  158 (600)
T KOG0509|consen   86 AINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHT  158 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCch
Confidence            36778899999999999999988 7789999999999999999999999999999999999999999999885

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.15  E-value=3.8e-10  Score=116.46  Aligned_cols=97  Identities=12%  Similarity=0.004  Sum_probs=75.0

Q ss_pred             HHHHHHHcCC-hhhhhh-hcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC--HHHHHH
Q 023608          172 PILDEIESGG-PSAMMK-YWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD--AEGLKN  247 (280)
Q Consensus       172 ~i~e~i~~~g-~~al~~-~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~--~eivk~  247 (280)
                      ++++.+.+.| ...-.+ .....+.+|...   +...++.+++++|++.|+++|.+|..|+||||+|+..|+  .++|++
T Consensus       156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~---~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYL---GNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             HHHHHHHHCCCCCcccccCCCCCcHHHHHH---HhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            4455555555 443322 233445566422   334456789999999999999999999999999999995  599999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          248 ALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       248 LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      ||++||++|.+|..|+||||+|+.
T Consensus       233 LLe~GADVN~kD~~G~TPLh~Ai~  256 (764)
T PHA02716        233 IIELGGDMDMKCVNGMSPIMTYII  256 (764)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999998853

>PHA02946 ankyin-like protein; Provisional

Probab=99.15  E-value=1.8e-10  Score=112.72  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC--CHHHHHHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG--DAEGLKNAL  249 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G--~~eivk~LL  249 (280)
                      .+++.+.+.|...-.+.....+.+|..+     ..++.++|+.|+++|+++|.+|..|+||||+|+..+  ..+++++|+
T Consensus        53 ~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa-----~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         53 RFVEELLHRGYSPNETDDDGNYPLHIAS-----KINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             HHHHHHHHCcCCCCccCCCCCCHHHHHH-----HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            4455666666655444445556666555     567778888888888888888888888888887655  367788888


Q ss_pred             HcCCCCCC-CCCCCCcHHHHHHHcCC
Q 023608          250 AAGADKDE-EDSEGRTALHFACGYGE  274 (280)
Q Consensus       250 ~~GAdvn~-~D~~G~TPLH~Aa~~G~  274 (280)
                      ++|++++. .|..|+|||| ||..|+
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~  152 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPS  152 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCC
Confidence            88888774 5777777776 444444

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=5.7e-11  Score=115.59  Aligned_cols=71  Identities=23%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..|-.++|+..+..-.|+-..+.+|.|+||-|.+.||.+||+|||+.|++||+.|.+||||||.|+.++.+
T Consensus       559 LeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  559 LEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             hcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            55777899999999899999999999999999999999999999999999999999999999999988765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.14  E-value=1.3e-10  Score=99.77  Aligned_cols=72  Identities=21%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             ccCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNA-GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~-~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+....|+.|++ ...-||.+|.+|.||||.|+++|+++||+.|+..||+++++...||||||-||.+...+
T Consensus        72 e~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   72 EKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             hhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            3444455666665 55569999999999999999999999999999999999999999999999999776543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.14  E-value=2.9e-10  Score=110.08  Aligned_cols=96  Identities=18%  Similarity=0.011  Sum_probs=72.2

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.|...-.+.....+.+|..+     ..+..+++++|++.|++++..|..|+||||+|+..|+.++|++|++.|
T Consensus       139 ~v~~Ll~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        139 SIKMLFEYGADVNIEDDNGCYPIHIAI-----KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             HHHHHHhCCCCCCCcCCCCCCHHHHHH-----HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            344444444443333334445565544     567788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcC
Q 023608          253 ADKDEEDSEGRTALHFACGYG  273 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G  273 (280)
                      ++++.++..|+||||+|+.++
T Consensus       214 ~~i~~~~~~g~TpL~~A~~~~  234 (434)
T PHA02874        214 NHIMNKCKNGFTPLHNAIIHN  234 (434)
T ss_pred             CCCcCCCCCCCCHHHHHHHCC
Confidence            888888778888888777654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.13  E-value=7.4e-11  Score=124.72  Aligned_cols=72  Identities=19%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+...+++.++++|++++.++.++.||||+||.+|++++|++||++|++++.+|+.|+||||.||.+||.+
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence            445557889999999999999999999999999999999999999999999999999999999999999754

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.11  E-value=2.9e-10  Score=110.68  Aligned_cols=72  Identities=18%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG--DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G--~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|++.|++++..+..|.||||+|+..|  +.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID  190 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence            456778888888888888888888888888888888  888888888888888888888888888888887654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.09  E-value=3.9e-10  Score=111.06  Aligned_cols=69  Identities=13%  Similarity=-0.036  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          207 GGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ....++.+|++ ++|+|.+|..|+||||+|+.+|+.+++++||++|+|++.+|..|+||||+|+..++.+
T Consensus       237 ~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        237 FKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             chHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHH
Confidence            34566777666 5899999999999999999999999999999999999999999999999999888653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.08  E-value=5.1e-10  Score=109.71  Aligned_cols=62  Identities=18%  Similarity=0.055  Sum_probs=32.5

Q ss_pred             CHHHHHHHHhCCCCccccCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          208 GDATTSADNAGADEAEEVGN-EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       208 ~~~~v~~Ll~~gadvn~~D~-~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      +.++++.|++.|+++|.++. .|.||||+|  .++.+++++|+++|+++|.+|..|+||||+|+.
T Consensus       247 ~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        247 DYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            34455555555555555443 455555555  234455555555555555555555555555554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.07  E-value=7.9e-10  Score=83.50  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED  259 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D  259 (280)
                      .+.++.++     ..++.+++++|++.|++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus        27 ~~~l~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   27 NTALHYAA-----ENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SBHHHHHH-----HTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCHHHHHH-----HcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            34666555     6788999999999999999999999999999999999999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.06  E-value=7.2e-10  Score=114.42  Aligned_cols=65  Identities=15%  Similarity=0.022  Sum_probs=37.2

Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          207 GGDATTSADNAGADEAEEVGNEDESIVHHTAS--VGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~--~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      ++.++++.|++.|++++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.
T Consensus       295 g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        295 IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            44455555666666666666666666665442  345556666666666666666666666665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.06  E-value=6.7e-10  Score=113.53  Aligned_cols=72  Identities=15%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++..+.+|.||||+|+..|+.+
T Consensus       154 ~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~  225 (682)
T PHA02876        154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID  225 (682)
T ss_pred             HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHH
Confidence            567889999999999999999999999999999999999999999999999999999999999999988864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.06  E-value=8.6e-11  Score=113.30  Aligned_cols=79  Identities=19%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             hHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          198 LGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       198 ~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ...+.....|+.++|+.|+..|++||.......|||.-||.-|+.++|++|+++|+|++..|+.|+|.||.||.+||++
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~  164 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD  164 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH
Confidence            3344445678999999999999999999999999999999999999999999999999999999999999999999986

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.03  E-value=8.6e-10  Score=108.73  Aligned_cols=61  Identities=15%  Similarity=0.043  Sum_probs=32.7

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHH
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASV---GDAEGLKNALAAGADK-DEEDSEGRTALHFAC  270 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~---G~~eivk~LL~~GAdv-n~~D~~G~TPLH~Aa  270 (280)
                      ++++.|++.|+|+|.+|..|.||||.|+..   ++.++|++|+++|+++ +.+|..|+||||+|+
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~  153 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYL  153 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHH
Confidence            455555555555555555555555544432   3455555555555555 455555555555554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.02  E-value=3.6e-10  Score=87.90  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             hcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608          188 YWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH  267 (280)
Q Consensus       188 ~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH  267 (280)
                      .......+|..+     ..|...++++|+..|++|+.+|++|.|||.-|.+.||.+||++||..|++-..+--+|.+.+.
T Consensus        31 ~~ggR~plhyAA-----D~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   31 IYGGRTPLHYAA-----DYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HhCCcccchHhh-----hcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            345555566666     667778888888888888888888888888888888888888888888887666666766554

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.98  E-value=2.5e-09  Score=109.30  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASVG-DAEGLKNALAAGADKDEEDSEGRTALHFACGYG  273 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G-~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G  273 (280)
                      .+++.|++.|+++|.+|..|+||||+|+..+ +.+++++|+++|++++.+|..|+||||+|+.++
T Consensus       423 ~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~  487 (682)
T PHA02876        423 MSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH  487 (682)
T ss_pred             HHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence            4577777777777778888888888887765 577788888888888888888888888777654

>PHA02917 ankyrin-like protein; Provisional

Probab=98.97  E-value=2.6e-09  Score=109.45  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH-cCC
Q 023608          208 GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG-YGE  274 (280)
Q Consensus       208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~-~G~  274 (280)
                      ..++++.|++.|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+. .++
T Consensus       431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC
Confidence            4567899999999999999999999999999999999999999999999999999999999996 444

>PHA02792 ankyrin-like protein; Provisional

Probab=98.94  E-value=3.3e-09  Score=107.15  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      .+++.|++.|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+.
T Consensus       391 ~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        391 SILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999975

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.91  E-value=4.1e-09  Score=89.33  Aligned_cols=66  Identities=26%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             HHHHHHHHhCCC---CccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          209 DATTSADNAGAD---EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       209 ~~~v~~Ll~~ga---dvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .++++.|++.|+   +.+.+|..|+||||+|+..|+.+++++|++.|++++.++..|.|+||+|+..++
T Consensus       124 ~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~  192 (235)
T COG0666         124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR  192 (235)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch
Confidence            455555555555   333335555555555555555555555555555555555555555555555444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.88  E-value=7.3e-09  Score=87.78  Aligned_cols=72  Identities=26%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD-----AEGLKNALAAGA---DKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~-----~eivk~LL~~GA---dvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+....+..++..|++++.+|..|.||||+|+..++     .+++++||+.|+   ..+.+|..|+||||+|+..|+.+
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~  161 (235)
T COG0666          82 SKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD  161 (235)
T ss_pred             HcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchH
Confidence            4456677899999999999999999999999999999     999999999999   56667999999999999999864

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.87  E-value=8.4e-10  Score=97.82  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=56.2

Q ss_pred             hhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          202 MGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       202 ~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      +....|..++|++|+.++.|||+.|-+|-|||.||++-+|++||+.||..|++++..|..|++++..|+..|+
T Consensus       199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            3345566677888888888888888888888888888888888888888888888888888888887776654

>PHA02730 ankyrin-like protein; Provisional

Probab=98.87  E-value=8.9e-09  Score=104.88  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHc
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-EGRTALHFACGY  272 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~  272 (280)
                      +++++|++.|+|+|.+|..|+||||+|+..++.+++++|+++|+++|.+|. .|+||||+|+..
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999997 599999999863

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.86  E-value=1.4e-09  Score=90.74  Aligned_cols=55  Identities=27%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             ccccCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608          222 AEEVGNEDESIVHHTASVGDA---EGLKNALAAGADKDEEDS-EGRTALHFACGYGEVC  276 (280)
Q Consensus       222 vn~~D~~g~TpLh~Aa~~G~~---eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e  276 (280)
                      ++.+|.+|+||||+||..|+.   +++++|++.|++++.+|. .|+||||+|+.+|+.+
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~  106 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYE  106 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHH
Confidence            345689999999999999987   468899999999999984 9999999999988764

>PHA02730 ankyrin-like protein; Provisional

Probab=98.86  E-value=1.3e-08  Score=103.72  Aligned_cols=106  Identities=13%  Similarity=0.017  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCC--CccccCCCCCcHHHH---HHhcC---
Q 023608          169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGAD--EAEEVGNEDESIVHH---TASVG---  240 (280)
Q Consensus       169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~ga--dvn~~D~~g~TpLh~---Aa~~G---  240 (280)
                      --.++++.+.+.|...-.+ ....+.+|..+..-. ..-+.+++++|+++|+  +++.+|..|+||||.   +...+   
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nn-n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNN-NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcC-CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            3456677777777765554 455566766552200 0012699999999997  699999999999984   33232   


Q ss_pred             ------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          241 ------DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       241 ------~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                            ..+++++|+.+|+++|.+|..|+||||+|+..++.+
T Consensus       435 ~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~e  476 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQ  476 (672)
T ss_pred             cccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHH
Confidence                  235799999999999999999999999999887653

>PHA02795 ankyrin-like protein; Provisional

Probab=98.85  E-value=9.8e-09  Score=100.07  Aligned_cols=72  Identities=15%  Similarity=-0.109  Sum_probs=61.4

Q ss_pred             ccCCHHHHHHHHhCCCCccccC------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVG------NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D------~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|+++|++.+...      ..+.|++|.|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e  235 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID  235 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence            5577889999999997543322      34778899999999999999999999999999999999999999999865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.84  E-value=1.4e-08  Score=79.09  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +..|..+.|+-....|.+||..= .|++|||||+-+|.+++++||+..|++|+.+|+.|-|||.-|++.||.+
T Consensus        10 vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen   10 VKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            34566666777777778888764 8999999999999999999999999999999999999999999999864

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.84  E-value=6.5e-09  Score=105.70  Aligned_cols=97  Identities=26%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHh--CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNA--GADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~--~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++-+...|.+.-.+-.+.+..+|.++     ..|....|+.|+.  .-...|+.|..|.||||+|+..||.++++.||..
T Consensus       289 vd~Ll~~Ga~I~~kn~d~~spLH~AA-----~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  289 VDNLLGFGASINSKNKDEESPLHFAA-----IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             HHHHHHcCCcccccCCCCCCchHHHH-----HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc
Confidence            33344444444444455556666666     6677788888877  3334688888888888888888888888888888


Q ss_pred             CCCCC---CCCCCCCcHHHHHHHcCCC
Q 023608          252 GADKD---EEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       252 GAdvn---~~D~~G~TPLH~Aa~~G~~  275 (280)
                      |+.+.   ..|.+|.|+||+|+.+|+.
T Consensus       364 GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  364 GALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             ChhhhcccccccCCchhhhHHHHhccH
Confidence            88876   5688888888888888874

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.82  E-value=7.9e-09  Score=91.74  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             HhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          197 KLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       197 ~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+...+....|+..+|++|+..|+|++...++..++|.+||..|..+||++||.++.|||.-|.+|-|||.||+..+|++
T Consensus       161 fTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvk  240 (296)
T KOG0502|consen  161 FTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVK  240 (296)
T ss_pred             chHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHH
Confidence            33444455778899999999999999999999999999999999999999999999999999999999999999999874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.81  E-value=7.4e-09  Score=95.10  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=77.5

Q ss_pred             HHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608          171 KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA  250 (280)
Q Consensus       171 ~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~  250 (280)
                      ..+.+.+.+.|...-...-.|...+|..+     ..|+-++|..|++..+|||..+..|.|||||||.+|...+.+-|+.
T Consensus        47 ~aivemll~rgarvn~tnmgddtplhlaa-----ahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~  121 (448)
T KOG0195|consen   47 VAIVEMLLSRGARVNSTNMGDDTPLHLAA-----AHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLIS  121 (448)
T ss_pred             HHHHHHHHhcccccccccCCCCcchhhhh-----hcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHh
Confidence            44556666666544333344555565555     6788899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHH
Q 023608          251 AGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       251 ~GAdvn~~D~~G~TPLH~A  269 (280)
                      .|+.|+.-++.|.|||..|
T Consensus       122 ~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  122 CGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ccceeeecccCCCCchhhh
Confidence            9999999999999999865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.80  E-value=1.2e-08  Score=70.73  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=37.3

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL  249 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL  249 (280)
                      ..|+.+++++|++.|.|++.+|.+|+||||+||..|+.+++++||
T Consensus        10 ~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   10 RSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678889999999999999999999999999999999999999996

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.79  E-value=6.5e-08  Score=74.79  Aligned_cols=97  Identities=21%  Similarity=0.262  Sum_probs=74.6

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      ++.+...+.............++.+.     ..+..++++.|+..+.+++..+..+.||+|+|+..++.+++++|+..+.
T Consensus        23 i~~li~~~~~~~~~~~~g~~~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~   97 (126)
T cd00204          23 VKLLLENGADVNAKDNDGRTPLHLAA-----KNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA   97 (126)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            33444433332233334445555554     4566789999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCC
Q 023608          254 DKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      +++..|..+.||||+|...++.
T Consensus        98 ~~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          98 DVNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             CCcccCCCCCCHHHHHHhcCCH
Confidence            9999999999999999887654

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.79  E-value=3.5e-08  Score=76.30  Aligned_cols=72  Identities=25%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..+.++.|+..+.+++..+..|.||||+|+..++.+++++|+..+++++..+..+.||+|+|+.+++.+
T Consensus        16 ~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~   87 (126)
T cd00204          16 SNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLD   87 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHH
Confidence            567778999999999999999999999999999999999999999999999999999999999999988643

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=98.78  E-value=2e-08  Score=101.56  Aligned_cols=72  Identities=15%  Similarity=0.034  Sum_probs=63.3

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCC--CcHHHHHHhcCCH---HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNED--ESIVHHTASVGDA---EGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g--~TpLh~Aa~~G~~---eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++|+.|++.|++++.+|..|  .||||+|+.....   +++++|+++|+++|.+|..|+||||+|+..++.+
T Consensus       348 ~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~e  424 (631)
T PHA02792        348 DNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVS  424 (631)
T ss_pred             HcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHH
Confidence            6788899999999999999999875  6999998876654   4688999999999999999999999999887753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.78  E-value=1.9e-08  Score=102.41  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCcHHHHHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AG-ADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~G-Advn~~D~~G~TPLH~Aa  270 (280)
                      +.+|..+     ..|+.+.++.|+..|++++.+++++.||||+||++|+..+|+.||+ .| ..+|..|-.|.||||.|+
T Consensus       275 tpLH~a~-----r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  275 TPLHYAA-----RQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA  349 (929)
T ss_pred             chHHHHH-----HcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence            3455555     7788999999999999999999999999999999999999999999 56 567999999999999999


Q ss_pred             HcCCC
Q 023608          271 GYGEV  275 (280)
Q Consensus       271 ~~G~~  275 (280)
                      ..||-
T Consensus       350 ~~gH~  354 (929)
T KOG0510|consen  350 KSGHD  354 (929)
T ss_pred             hcCHH
Confidence            98884

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.77  E-value=8.7e-09  Score=100.63  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+-|+.|+..|++++..+.+|.|+||-+|.-.+.+||+||+++|++||..|.+||||||.|+.+||+.
T Consensus        49 ~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   49 SRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             ccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            456777888999999999999999999999999999999999999999999999999999999999988863

>PF13606 Ank_3: Ankyrin repeat

Probab=98.75  E-value=1.1e-08  Score=63.28  Aligned_cols=30  Identities=33%  Similarity=0.408  Sum_probs=28.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 023608          228 EDESIVHHTASVGDAEGLKNALAAGADKDE  257 (280)
Q Consensus       228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~  257 (280)
                      +|+||||+||+.|+.++|++||++|+|||+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=2e-08  Score=62.97  Aligned_cols=33  Identities=27%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 023608          228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDS  260 (280)
Q Consensus       228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~  260 (280)
                      +|+||||+||.+|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.71  E-value=2.8e-08  Score=93.56  Aligned_cols=124  Identities=23%  Similarity=0.298  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHHHhhc-CCC-hHHHHHHHHcCChhhhhhh--cCchhHHHHhHHh--------------------hh-h-c
Q 023608          152 TKKDQIEERMAKIKE-DPS-LKPILDEIESGGPSAMMKY--WNDKDVLQKLGEA--------------------MG-L-A  205 (280)
Q Consensus       152 ~~~~~~~~~l~~lk~-dp~-~~~i~e~i~~~g~~al~~~--~~d~~~l~~~~~~--------------------~g-~-~  205 (280)
                      ....+++..+..+.. .|. |..++...+++|..++|..  ..+.+++..+...                    +. + .
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence            455566666666554 333 3344566677787777743  2233444333210                    00 0 1


Q ss_pred             cCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          206 VGGDATTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+.++|+.|..-|. ||.+ ...|+|+|.+|..+|++++|+.||..|||||.+|.+|.|+|..||.+||.|
T Consensus       317 ~~d~~vV~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkE  387 (452)
T KOG0514|consen  317 PADRTVVERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKE  387 (452)
T ss_pred             hhhHHHHHHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHH
Confidence            123356777777765 7765 467999999999999999999999999999999999999999999999986

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.71  E-value=2.1e-08  Score=103.69  Aligned_cols=78  Identities=17%  Similarity=0.032  Sum_probs=68.6

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC--------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG--------------NEDESIVHHTASVGDAEGLKNALAAGADKD  256 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D--------------~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn  256 (280)
                      +.+.+|.++     ..++.++|+.|++.|++++.++              ..|+||||+|+..|+.+++++|+++|+|++
T Consensus       128 G~TpLhlAa-----~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin  202 (743)
T TIGR00870       128 GITALHLAA-----HRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL  202 (743)
T ss_pred             CCcHHHHHH-----HhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence            445555555     6688899999999999999753              368999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcC
Q 023608          257 EEDSEGRTALHFACGYG  273 (280)
Q Consensus       257 ~~D~~G~TPLH~Aa~~G  273 (280)
                      .+|..|+||||+|+..+
T Consensus       203 ~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       203 TADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hHhhhhhHHHHHHHhhh
Confidence            99999999999999875

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.61  E-value=5.8e-08  Score=94.98  Aligned_cols=63  Identities=24%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       214 ~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..|.+.++.+..|.|.||.|+.+|..++.++||.+|.+++.+|.+||||||.|+.+|+.+
T Consensus       183 q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~  245 (527)
T KOG0505|consen  183 QWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQED  245 (527)
T ss_pred             HHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHh
Confidence            335588999999988999999999999999999999999999999999999999999998865

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.56  E-value=3.3e-08  Score=100.03  Aligned_cols=82  Identities=17%  Similarity=0.067  Sum_probs=58.5

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ++-+.+|+++     ..|+..++++|++..+-++..|..|.+|||+|+|.|+.++|+.|+.++..+|+...+|.||||.|
T Consensus        48 ~gfTalhha~-----Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhla  122 (854)
T KOG0507|consen   48 SGFTLLHHAV-----LNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLA  122 (854)
T ss_pred             cchhHHHHHH-----hcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchh
Confidence            4556666666     55666777777777777777777777777777777777777777777766777777777777777


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +++||.|
T Consensus       123 aqhgh~d  129 (854)
T KOG0507|consen  123 AQHGHLE  129 (854)
T ss_pred             hhhcchH
Confidence            7777765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.52  E-value=4e-07  Score=92.87  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc---------C--------------CCCCcHHHHHHhcCCHHHHHHHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEV---------G--------------NEDESIVHHTASVGDAEGLKNAL  249 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~---------D--------------~~g~TpLh~Aa~~G~~eivk~LL  249 (280)
                      +.....++.+++...+.+.|++|++.||||+.+         |              +.|+.||.+||..+..+|+++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            333344444555667779999999999998754         1              24788999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHc
Q 023608          250 AAGADKDEEDSEGRTALHFACGY  272 (280)
Q Consensus       250 ~~GAdvn~~D~~G~TPLH~Aa~~  272 (280)
                      ++|||++++|..|+|.||..+.+
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHH
Confidence            99999999999999999987653

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.46  E-value=3.1e-07  Score=84.46  Aligned_cols=101  Identities=20%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCChhhhhhh-----------cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHh
Q 023608          171 KPILDEIESGGPSAMMKY-----------WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEV-GNEDESIVHHTAS  238 (280)
Q Consensus       171 ~~i~e~i~~~g~~al~~~-----------~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~  238 (280)
                      +++++.|.+++.++....           -+.-.++.+.+     --|..+.|+.|++.|+|||.. +..+.||||+|+.
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAa-----ykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAA-----YKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHH-----hcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            566777777765543321           22223444444     557889999999999999864 5678999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       239 ~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .|+.++.++|++.|+.....+.-|+|+-.+|+.-||.+
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~  126 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE  126 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchH
Confidence            99999999999999999999999999999999988865

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=8.4e-07  Score=81.65  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCCC
Q 023608          207 GGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++.+....|++.--.+|.+|..|.|+|..|++.|+.+.|+.||+.|+|||. ++..++||||+|+..|..+
T Consensus        23 ndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   23 NDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             CcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            455667778888777999999999999999999999999999999999987 6778999999999988653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=3.4e-07  Score=89.70  Aligned_cols=63  Identities=16%  Similarity=0.043  Sum_probs=54.9

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALH  267 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH  267 (280)
                      -.|+.++|++||..|++||..|.+||||||+||.++++-+++.|++.|+-|-+ .-.++.|+..
T Consensus       592 CaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  592 CAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             hcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence            45788999999999999999999999999999999999999999999988755 3445666643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.42  E-value=8.5e-07  Score=91.11  Aligned_cols=92  Identities=11%  Similarity=0.077  Sum_probs=75.4

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc--
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA--  251 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~--  251 (280)
                      ++.+...+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|.||||+|+.+|+.+++++|+.+  
T Consensus        98 vk~LL~~Gadin~~d~~G~TpLh~Aa-----~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~  172 (664)
T PTZ00322         98 ARILLTGGADPNCRDYDGRTPLHIAC-----ANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ  172 (664)
T ss_pred             HHHHHHCCCCCCCcCCCCCcHHHHHH-----HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence            44444455444444445556666665     67889999999999999999999999999999999999999999999  


Q ss_pred             -----CCCCCCCCCCCCcHHHHHH
Q 023608          252 -----GADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       252 -----GAdvn~~D~~G~TPLH~Aa  270 (280)
                           |++++..+..|++|+..++
T Consensus       173 ~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        173 CHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cccccCCCCCccccCCCCccchhh
Confidence                 9999999999998887655

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.32  E-value=5.4e-07  Score=92.14  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             HHHhHHhhhhccCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNE-DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       195 l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~-g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      +...+..+.++.+..+++++|+.+|+|++.+|++ |+||||.|.++|+++|+-.||.+|+.+..+|++|..||.+-|.
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            3333434444777889999999999999999955 9999999999999999999999999999999999999998876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.31  E-value=1.5e-06  Score=84.61  Aligned_cols=73  Identities=21%  Similarity=0.156  Sum_probs=67.3

Q ss_pred             hccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +..++.++.=-||+.|+++|.-+ ..|.||||.|+..|..-.+++|+-+|||+.+.|.+|.||+.||-..||.+
T Consensus       141 vRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  141 VRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             hhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            36778888889999999999877 55999999999999999999999999999999999999999999999865

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.30  E-value=9.5e-07  Score=91.43  Aligned_cols=72  Identities=13%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC---------CHHHHHHHHHcCCCC-------CCCCCCCCcHHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG---------DAEGLKNALAAGADK-------DEEDSEGRTALHF  268 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G---------~~eivk~LL~~GAdv-------n~~D~~G~TPLH~  268 (280)
                      ..++.+++++|++.|+|++.+|..|+||||+|+..+         ...+.++++..++.+       +.+|.+|.||||+
T Consensus       184 ~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~  263 (743)
T TIGR00870       184 CLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL  263 (743)
T ss_pred             HhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh
Confidence            557789999999999999999999999999999886         344667777766554       6679999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+..|+.+
T Consensus       264 A~~~g~~~  271 (743)
T TIGR00870       264 AAKEGRIV  271 (743)
T ss_pred             hhhcCCcc
Confidence            99999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.28  E-value=4.1e-07  Score=88.12  Aligned_cols=72  Identities=25%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+...++-+.-.|.|++.+|++.+|+||+||..|++++++|||.. +.+.+.+|++|+|||.-|..++|.+
T Consensus       515 ~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  515 KNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            56777888888889999999999999999999999999999999995 6899999999999999999988864

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.21  E-value=1.7e-06  Score=87.78  Aligned_cols=72  Identities=22%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      -.|+.++++.|+.+++.+|....+|.||||.|+..||.++|.+||.+|+|.-.++..+.|+|-+||+.|.++
T Consensus        91 w~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   91 WNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             hcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            457789999999999999999999999999999999999999999999999999999999999999999765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=2.2e-06  Score=84.02  Aligned_cols=59  Identities=24%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       217 ~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      +....|+.+|..|+||||+|+..|++++++.|+.+|+++..++.+||+|||-|+.+|.-
T Consensus        43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            35567899999999999999999999999999999999999999999999999998864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.95  E-value=2e-06  Score=88.11  Aligned_cols=56  Identities=29%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608          221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-EGRTALHFACGYGEVC  276 (280)
Q Consensus       221 dvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e  276 (280)
                      -.|.+|..|+|+||+++..+...++++||.+|+||+.+|. .|+||||-|..|||+|
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~id  100 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNID  100 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHH
Confidence            3788999999999999999999999999999999999998 5999999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.95  E-value=1.3e-05  Score=82.12  Aligned_cols=73  Identities=16%  Similarity=0.143  Sum_probs=67.2

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd--vn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +-.++.+++++|+++|+|++.+|..|+|.||....+-..++..+++++|++  ...+++.|-|||-+||.-|..+
T Consensus       248 AC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  248 ACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             HHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHH
Confidence            355777999999999999999999999999999999889999999999999  8899999999999999877654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.88  E-value=1.6e-05  Score=78.86  Aligned_cols=66  Identities=24%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             HHHHHHHHhCCCC--ccc--cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          209 DATTSADNAGADE--AEE--VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       209 ~~~v~~Ll~~gad--vn~--~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ...+-+|+++|-.  +|+  .+.+|+|+||+||..|++.+.++||=+|+|+.++|..|+|+|.||-..|.
T Consensus       637 l~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  637 LQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            3456677887753  333  45678999999999999999999999999999999999999999976553

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=97.81  E-value=2.5e-05  Score=54.68  Aligned_cols=43  Identities=7%  Similarity=0.033  Sum_probs=27.0

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT  236 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~A  236 (280)
                      ....+.+|..+     ..|+.+++++|+..|+|++.+|.+|+||||+|
T Consensus        14 ~~G~T~LH~A~-----~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   14 KYGNTPLHWAA-----RYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TTS--HHHHHH-----HHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCCcHHHHHH-----HcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44446666666     67888999999999999999999999999997

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.71  E-value=1.2e-05  Score=84.66  Aligned_cols=80  Identities=20%  Similarity=0.165  Sum_probs=68.4

Q ss_pred             HhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCC
Q 023608          197 KLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEV  275 (280)
Q Consensus       197 ~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH~Aa~~G~~  275 (280)
                      ++.+-+.+..|+.+.|++|+..|++|+.+|+.|.+||++|+-.||..+|+.|+++.++|++ .|+.+.|+|.+||..|..
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~  837 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT  837 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence            3344444567888999999999999999999999999999999999999999999999988 578899999999987765


Q ss_pred             C
Q 023608          276 C  276 (280)
Q Consensus       276 e  276 (280)
                      +
T Consensus       838 ~  838 (2131)
T KOG4369|consen  838 R  838 (2131)
T ss_pred             h
Confidence            4

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.65  E-value=8.4e-05  Score=73.81  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=76.7

Q ss_pred             HcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 023608          178 ESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADE--AEEVGNEDESIVHHTASVGDAEGLKNALAAGADK  255 (280)
Q Consensus       178 ~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gad--vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdv  255 (280)
                      -.+|-+.++..-..-.++|+.+     ..|.-++|++++.+|..  +|..|..|.|+||.|+..++..+.++|++.|+.+
T Consensus       886 h~~gg~ll~~~~~~~sllh~a~-----~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl  960 (1004)
T KOG0782|consen  886 HLNGGSLLIQGPDHCSLLHYAA-----KTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL  960 (1004)
T ss_pred             HhcCCceEeeCcchhhHHHHHH-----hcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh
Confidence            3344455555555556677766     77888999999999874  5778899999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCC
Q 023608          256 DEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       256 n~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ...|..|.||-.-|-..|..
T Consensus       961 ~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  961 RKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             eecccCCCChHHHHHhcCCc
Confidence            99999999999888766554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.54  E-value=0.00017  Score=68.74  Aligned_cols=61  Identities=16%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTA  265 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TP  265 (280)
                      ..|+.+.|+.|++-|.+||..|....+||.+||.+||..+|++|+++||-...-.-+|...
T Consensus        45 R~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   45 RAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             hcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            5688899999999999999999999999999999999999999999999877655566554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.35  E-value=0.00016  Score=75.59  Aligned_cols=72  Identities=17%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             hhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          203 GLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       203 g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .+..+...++++|+..|+++|.+|..|+||||.+...|+...+..|+++|++.++.|.+|++||++|....+
T Consensus       663 a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  663 AVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             hhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            346677788999999999999999999999999999999999999999999999999999999999976533

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.35  E-value=0.00021  Score=62.42  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=31.6

Q ss_pred             CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCC
Q 023608          220 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       220 advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G-Advn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .+||.+|..|+|+|..|+..|..+.|.+|+.+| ++|-+.|..|.+.+.+|-..|+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~   58 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA   58 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh
Confidence            345555556666666665556666666666555 5555555555555555554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.18  E-value=0.00043  Score=66.11  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       231 TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      --|+.||+.|+++.|++|++.|.+||.+|+....||.+||.+||.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~   83 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHED   83 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHH
Confidence            3478999999999999999999999999999999999999999965

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=97.16  E-value=0.00023  Score=75.43  Aligned_cols=45  Identities=13%  Similarity=0.090  Sum_probs=18.2

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD  254 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd  254 (280)
                      ++|++||.+|++...++-...|||.+|+.-|.++||+.||.+|+.
T Consensus       838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse  882 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE  882 (2131)
T ss_pred             hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccc
Confidence            334444444444433433334444444444444444444444433

>smart00248 ANK ankyrin repeats

Probab=97.00  E-value=0.0014  Score=36.79  Aligned_cols=29  Identities=31%  Similarity=0.401  Sum_probs=26.2

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 023608          228 EDESIVHHTASVGDAEGLKNALAAGADKD  256 (280)
Q Consensus       228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn  256 (280)
                      .+.|+||+++..++.+++++|+..+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=96.97  E-value=0.00093  Score=43.80  Aligned_cols=19  Identities=21%  Similarity=0.560  Sum_probs=14.5

Q ss_pred             HhhCChHHHHHHHHHhcCC
Q 023608           63 GLLNDPSIKELAEQIAKDP   81 (280)
Q Consensus        63 ~~~~~p~~~~~~~~~~~~p   81 (280)
                      ++++||.+.++.++|++||
T Consensus         6 ~~l~~P~~~~~l~~~~~nP   24 (41)
T smart00727        6 LRLQNPQVQSLLQDMQQNP   24 (41)
T ss_pred             HHHcCHHHHHHHHHHHHCH
Confidence            4666888888877788888

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.87  E-value=0.00037  Score=73.28  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             HHHHHHHhC-CCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          210 ATTSADNAG-ADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       210 ~~v~~Ll~~-gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      -+++.+++- +-...+.|.++.-.+|+ |..++.+++-+|+. .|..++.+|..||||||||+.+||.
T Consensus       588 wLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e  654 (975)
T KOG0520|consen  588 WLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGRE  654 (975)
T ss_pred             HHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHH
Confidence            344444442 44444555555555566 33344444444433 4566666666666666666666653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.66  E-value=0.0041  Score=61.25  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             HHHHHHHHhCCCCccc------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          209 DATTSADNAGADEAEE------VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       209 ~~~v~~Ll~~gadvn~------~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ...+++|.+++.+.|.      .+.--.|+||+|+..|..+||.+||+.|+|.-++|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3578888888887653      3445678999999999999999999999999999999999987654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.43  E-value=0.0028  Score=63.34  Aligned_cols=57  Identities=30%  Similarity=0.323  Sum_probs=49.9

Q ss_pred             hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcC
Q 023608          217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYG  273 (280)
Q Consensus       217 ~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd--vn~~D~~G~TPLH~Aa~~G  273 (280)
                      .+|.++-.++.+..+.||+|+..|+-++|+|+|++|..  ++..|..|.|.||-|+..+
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            45666888899999999999999999999999999964  6889999999999887654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.42  E-value=0.002  Score=67.45  Aligned_cols=61  Identities=31%  Similarity=0.324  Sum_probs=52.4

Q ss_pred             hCCCCccc--cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608          217 AGADEAEE--VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS  277 (280)
Q Consensus       217 ~~gadvn~--~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~  277 (280)
                      ..++++|-  .-..|.|+||.||.++...++++|+..|+++|.+|..|+||||.+...||...
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~  704 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSI  704 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccch
Confidence            44555553  23567999999999999999999999999999999999999999999888754

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.34  E-value=0.0063  Score=56.65  Aligned_cols=62  Identities=23%  Similarity=0.393  Sum_probs=45.1

Q ss_pred             hhcHHHH-HHhhCChHHHHHHHHHhcCC---------h--HHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccCh
Q 023608           55 PFDFSAM-SGLLNDPSIKELAEQIAKDP---------A--FNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNP  122 (280)
Q Consensus        55 p~~~~~~-~~~~~~p~~~~~~~~~~~~p---------~--~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np  122 (280)
                      |..+++. .+||+||.+++++++||+|+         .  ...|+.-++.       ++++|....         .+++|
T Consensus       219 Pd~~s~~~~~l~nnp~l~~~~~~m~~~~~~~~~~~~~~~~~~~i~~~~~a-------~~q~~~~~~---------~~n~p  282 (304)
T KOG0553|consen  219 PDSRSMFNGDLMNNPQLMQLASQMMKDGALNGPKNGPDNKTDMIASLIGA-------GGQMPELSD---------GANPP  282 (304)
T ss_pred             ccchhhhccccccCHHHHHHHHHHhhcccccCccCCCcchhhHHHHHHhc-------cCCCCcccc---------ccCCH
Confidence            5555555 48999999999999999842         2  5566666654       677777763         78889


Q ss_pred             HHHHHHHHHH
Q 023608          123 QFMTMAERLG  132 (280)
Q Consensus       123 ~~~~ma~~~~  132 (280)
                      .+.++..+++
T Consensus       283 ~~e~~~~~~~  292 (304)
T KOG0553|consen  283 LIENLRGNFG  292 (304)
T ss_pred             HHHHHHhhcC
Confidence            8888887764

>PF13606 Ank_3: Ankyrin repeat

Probab=96.30  E-value=0.0018  Score=39.69  Aligned_cols=16  Identities=38%  Similarity=0.669  Sum_probs=14.5

Q ss_pred             CCCcHHHHHHHcCCCC
Q 023608          261 EGRTALHFACGYGEVC  276 (280)
Q Consensus       261 ~G~TPLH~Aa~~G~~e  276 (280)
                      +|+||||+||.+|++|
T Consensus         1 ~G~T~Lh~A~~~g~~e   16 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIE   16 (30)
T ss_pred             CCCCHHHHHHHhCCHH
Confidence            5899999999999876

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=96.26  E-value=0.0014  Score=42.92  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=27.2

Q ss_pred             CCCCChhcHHHHHHhhCChHHHHHHHHHhc-CChHHH
Q 023608           50 GAAPNPFDFSAMSGLLNDPSIKELAEQIAK-DPAFNS   85 (280)
Q Consensus        50 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~-~p~~~~   85 (280)
                      ..+.||.+.+.++.|++||   ++.+++++ ||.+++
T Consensus         6 ~~l~~P~~~~~l~~~~~nP---~~~~~~~~~nP~~~~   39 (41)
T smart00727        6 LRLQNPQVQSLLQDMQQNP---DMLAQMLQENPQLLQ   39 (41)
T ss_pred             HHHcCHHHHHHHHHHHHCH---HHHHHHHHhCHHhHh
Confidence            4567999999999999999   55567888 997764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.08  E-value=0.017  Score=57.86  Aligned_cols=51  Identities=10%  Similarity=0.005  Sum_probs=47.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADK  255 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdv  255 (280)
                      ..|++.+.++|+=.|+|+-.+|..|+|+|.||-..|..+|+.+||.+|+.-
T Consensus       670 ~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  670 RKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            667788999999999999999999999999999999999999999999753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=95.91  E-value=0.0048  Score=60.51  Aligned_cols=52  Identities=33%  Similarity=0.371  Sum_probs=47.3

Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608          226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS  277 (280)
Q Consensus       226 D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~  277 (280)
                      +.++...+.+|+..|++..++.+.-.|.|++.+|.+.||.||+|+..||++.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v  554 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEV  554 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeH
Confidence            4556678999999999999999988999999999999999999999999874

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.84  E-value=0.0079  Score=63.62  Aligned_cols=61  Identities=21%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCC
Q 023608          215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE------EDSEGRTALHFACGYGEV  275 (280)
Q Consensus       215 Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~------~D~~G~TPLH~Aa~~G~~  275 (280)
                      ....|..++.+|..|+||||||+.+|+..++..|++.|++-..      ..-.|.|+--.|...||-
T Consensus       627 ~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  627 ISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             EeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            3457788999999999999999999999999999987765432      334578888777776663

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.96  E-value=0.046  Score=54.36  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      +..|+...++.|+.+|+|+-.++.+|+++||.|+.+|+..++..+|.+
T Consensus        63 V~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   63 VRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            367888999999999999999999999999999999999998877765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=94.81  E-value=0.072  Score=46.89  Aligned_cols=69  Identities=6%  Similarity=-0.045  Sum_probs=57.1

Q ss_pred             HhHHhhhhccCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 023608          197 KLGEAMGLAVGGDATTSADNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTA  265 (280)
Q Consensus       197 ~~~~~~g~~~g~~~~v~~Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TP  265 (280)
                      -++..+++..|..+++.+|+.+| ++|...|..+.+.+.+|-..|..++|+.|.+...+....+..-.++
T Consensus        13 WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e   82 (223)
T KOG2384|consen   13 WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDE   82 (223)
T ss_pred             chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCC
Confidence            34445566778889999999999 9999999999999999999999999999999877666655544443

>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats

Probab=94.01  E-value=0.42  Score=41.24  Aligned_cols=128  Identities=13%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             CChhcHHHHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHH
Q 023608           53 PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLG  132 (280)
Q Consensus        53 ~~p~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~  132 (280)
                      .++.+..+ =..|+.+.++++.+++.+.|.|+..-+=|.+..           +|+-.|++....+..=|.+..--   .
T Consensus        30 ~D~efq~~-~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~g-----------ldv~~~i~~i~~~l~~~~~~p~~---~   94 (179)
T PF06757_consen   30 EDAEFQAA-VRYLNSSEFKQLWQQLEALPEVKALLDYLESAG-----------LDVYYYINQINDLLGLPPLNPTP---S   94 (179)
T ss_pred             cCHHHHHH-HHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHcCCcCCCCc---c
Confidence            34443333 345566778888888888888888888887632           67777777777776544441000   0


Q ss_pred             hhhcCCchhhHhHhhhcCcChHHHHHHHH-HHhhcCCChHHHHHHHHcCChhhhh-hhcCchhHH
Q 023608          133 NALMQDPSMSHMMESLTNPTKKDQIEERM-AKIKEDPSLKPILDEIESGGPSAMM-KYWNDKDVL  195 (280)
Q Consensus       133 ~~lm~dP~l~~ml~~l~n~~~~~~~~~~l-~~lk~dp~~~~i~e~i~~~g~~al~-~~~~d~~~l  195 (280)
                      .....-..+..+++.+..--+..++.... .++++++.|+.+.+.+.+.....+. +.|..+++.
T Consensus        95 ~~~~~~~g~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~~~~~~~~  159 (179)
T PF06757_consen   95 LSCSRGGGLNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNALWASPEFQ  159 (179)
T ss_pred             cccccCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHHHcCHHHH
Confidence            00003344667777777777777777554 7888899999999998887655544 457776665

These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=93.43  E-value=0.41  Score=45.27  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=22.6

Q ss_pred             hhCChHHHHHHHHHhcCChHHH-HHHHHHH
Q 023608           64 LLNDPSIKELAEQIAKDPAFNS-MAEQLQK   92 (280)
Q Consensus        64 ~~~~p~~~~~~~~~~~~p~~~~-ma~~~~~   92 (280)
                      |.++|+|.+|-+-|.+||++-+ |-+||++
T Consensus       219 Lr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~  248 (340)
T KOG0011|consen  219 LRNQPQFQQLRQMIQQNPELLHPLLQQLGK  248 (340)
T ss_pred             hhccHHHHHHHHHHhhCHHHHHHHHHHHhh
Confidence            7889999999888999996543 6666654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=92.75  E-value=0.2  Score=30.68  Aligned_cols=23  Identities=9%  Similarity=-0.049  Sum_probs=20.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGN  227 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~  227 (280)
                      ..+..++++.|+++|++++.+|+
T Consensus        11 ~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen   11 QRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             HTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             HHHHHHHHHHHHHCcCCCCCCCC
Confidence            66788999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=91.84  E-value=1  Score=44.81  Aligned_cols=58  Identities=24%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             HHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHH--hhhcC
Q 023608           60 AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLG--NALMQ  137 (280)
Q Consensus        60 ~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~--~~lm~  137 (280)
                      +-++++++|   ++.-+||.||.+.+|-.+.                   .+|.+  -||.||+++++.++--  .-+.+
T Consensus       148 ~q~~~~snp---e~~~~~m~nP~vq~ll~Np-------------------d~mrq--~I~anPqmq~lm~~npei~h~ln  203 (493)
T KOG0010|consen  148 MQNQLLSNP---EALRQMMENPIVQSLLNNP-------------------DLMRQ--LIMANPQMQDLMQRNPEIGHLLN  203 (493)
T ss_pred             chhccccCH---HHHHHhhhChHHHHHhcCh-------------------HHHHH--HHhcCHHHHHHHhhCCcchhhhc
Confidence            445677777   5556777777555544431                   11221  2667777777665532  34455


Q ss_pred             Cchh
Q 023608          138 DPSM  141 (280)
Q Consensus       138 dP~l  141 (280)
                      +|.+
T Consensus       204 ~p~i  207 (493)
T KOG0010|consen  204 NPLI  207 (493)
T ss_pred             ChHH
Confidence            5553

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=89.94  E-value=2  Score=43.00  Aligned_cols=47  Identities=9%  Similarity=-0.034  Sum_probs=42.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ..|...-+++|+--|+|+...|.+|.||+.+|-..||.++.+.|++.
T Consensus       176 k~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  176 KAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             hccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            56666778999999999999999999999999999999998887763

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.97  E-value=0.8  Score=48.09  Aligned_cols=55  Identities=18%  Similarity=0.007  Sum_probs=41.8

Q ss_pred             hccCCHHHHHHHHhCCCCcc----------ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 023608          204 LAVGGDATTSADNAGADEAE----------EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE  258 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn----------~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~  258 (280)
                      +..+...+|+.++.+-.+..          ..=..+.|||.+||..++.+|+++||.+|+.+...
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            34566677888876554431          12245799999999999999999999999998664

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=84.18  E-value=3.9  Score=40.75  Aligned_cols=19  Identities=26%  Similarity=0.609  Sum_probs=9.6

Q ss_pred             HHhhCChHHHHHHHHHhcCC
Q 023608           62 SGLLNDPSIKELAEQIAKDP   81 (280)
Q Consensus        62 ~~~~~~p~~~~~~~~~~~~p   81 (280)
                      ++|++ |.+..|.+.+.++|
T Consensus       348 ~~l~s-~~~~~m~~~~s~~P  366 (493)
T KOG0010|consen  348 QQLLS-PYIRSMFQSASQNP  366 (493)
T ss_pred             hhccc-hhhHHHHhhhccCc
Confidence            34444 45555555555555

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=83.78  E-value=2.2  Score=44.86  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=58.2

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----------CCCC
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKD----------EEDS  260 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn----------~~D~  260 (280)
                      -.+.+...+..+.+...+.+++++|+....++       ..+|.+|...|.+++|++++.+-....          ..=.
T Consensus        57 c~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft  129 (822)
T KOG3609|consen   57 CRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFT  129 (822)
T ss_pred             ccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCC
Confidence            33455555655666677889999999887755       567899999999999999998754431          1223


Q ss_pred             CCCcHHHHHHHcCCCC
Q 023608          261 EGRTALHFACGYGEVC  276 (280)
Q Consensus       261 ~G~TPLH~Aa~~G~~e  276 (280)
                      .+-|||.+||.+++.|
T Consensus       130 ~ditPliLAAh~NnyE  145 (822)
T KOG3609|consen  130 PDITPLMLAAHLNNFE  145 (822)
T ss_pred             CCccHHHHHHHhcchH
Confidence            4579999999988765

>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array

Probab=82.26  E-value=4.5  Score=28.83  Aligned_cols=29  Identities=24%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             HhhCChHHHHHHHHHhcCChH-HHHHHHHH
Q 023608           63 GLLNDPSIKELAEQIAKDPAF-NSMAEQLQ   91 (280)
Q Consensus        63 ~~~~~p~~~~~~~~~~~~p~~-~~ma~~~~   91 (280)
                      .|.++|.|.+|-+-+.+||+. ..+-++++
T Consensus         3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~   32 (59)
T PF09280_consen    3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLG   32 (59)
T ss_dssp             GGTTSHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHHHCHHHHHHHHHHHh
Confidence            578888888888888888853 33555544

They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 32/270 (11%), Positives = 73/270 (27%), Gaps = 73/270 (27%)

Query: 37  SGASAASAFPGVGGA-APN-PFDFSAMSGLLNDPSIKELAEQIAKDPAFNS--------- 85
                   F  V      N  F  S +      PS+        +D  +N          
Sbjct: 74  KQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 86  ----MAEQLQK-----------TLHG-------------ANAEESIPQFDTTQYYSTMQQ 117
                  +L++            + G               + +   + D   ++  ++ 
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 118 VMQNPQFMTMAERLGNALMQDPSMSHMMESLTN-PTKKDQIEERMAKIKEDPSLKP---I 173
                  + M ++L   +  DP+ +   +  +N   +   I+  + ++ +    +    +
Sbjct: 192 CNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLA----VGGDATTSADNAGADEAEEVGNED 229
           L  +            N K        A  L+    +     T+      D         
Sbjct: 250 LLNV-----------QNAKAW-----NAFNLSCKILL-----TTRFKQVTDFLSAATTTH 288

Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEED 259
            S+ HH+ ++   E   + L    D   +D
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLKYLDCRPQD 317

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              AD    V +E E+     A   D + L   L    D D  D  GRTAL F  G G
Sbjct: 35  YIAAD----VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTALLFVAGLG 87

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A     E ++  +  GAD + ED  G TAL  A    
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 216 NAGAD--EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                  +A         ++   A  G+ E ++ A+    D  + + EG TALH A    
Sbjct: 6   RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 7/58 (12%), Positives = 12/58 (20%), Gaps = 2/58 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           +        + N          S    + L             D    T   +A  +G
Sbjct: 144 DVEQSM--GLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG 199

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              AD    V +E E+     A   D + L   L    D D  D  GRTAL F  G G
Sbjct: 36  YIAAD----VVSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTALLFVAGLG 88

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A     E ++  +  GAD + ED  G TAL  A    
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC-GYGEV 275
                   +G   ++ +   A+ G  E ++  L AGAD +  +  GR  +     G  +V
Sbjct: 1   GSPG-IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQV 59

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
             AGA  D  D+ GR  +  A   G
Sbjct: 98  HRAGARLDVCDAWGRLPVDLAEEQG 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                 GD + +K+ +A G D +     GR  LH+A   G
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG 51

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                 +V  +D ++     S GD E +   L  GAD +  + +G TALH AC   
Sbjct: 31  RKKT--KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD 84

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 9/127 (7%)

Query: 150 NPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGD 209
            P     +  R   I      +    +  +   + +             G     A G D
Sbjct: 96  KPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVD 155

Query: 210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTAL 266
            T     A   E       DE+ +H      D   L      +    + D++  +G TAL
Sbjct: 156 LTEKIPLANGHE------PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL 209

Query: 267 HFACGYG 273
           H+ C   
Sbjct: 210 HYCCLTD 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A  G+   L+  L      +  D  G TAL++AC  G
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           LA GA  D  + E + A   A    
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAA 184

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             G+     +G++    +   A  G  + ++  +A GAD   +D  G T LH A   G
Sbjct: 15  PRGSH----MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNA-----LAAGADKDEEDSEGRTALHFAC 270
             G ++ E   +  +S + +     + +  +       +  GAD      EG T      
Sbjct: 27  EKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83

Query: 271 GYG 273
             G
Sbjct: 84  QGG 86

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYG 273
           +  A  A   G   +  +   A  G+ E L   L     +    D    T LH A GY 
Sbjct: 12  DPSAK-AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              A   D   +K  LA      ++     TALH A    
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG--EVC 276
           H+  S G  E  +  L  GA  +  D    T LH A      EVC
Sbjct: 96  HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A  G    L+N ++ G   +   ++  + LH AC  G
Sbjct: 64  HEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 103

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           + G      +  +  S +H     G    +K  L  GA  +   ++  T L  AC  G
Sbjct: 80  SQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 136

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           +A G + D + S   T L+ AC   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQ 201

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  +  GD   ++  L  G+D + +D  G T LH AC +G
Sbjct: 15  HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                 G  E  +  + AG D  + D E  T LH+A    
Sbjct: 14  VKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN 53

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           +  GAD    D EG + +H A  +G
Sbjct: 96  MKYGADPSLIDGEGCSCIHLAAQFG 120

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           +A G D D  D  G T L +A    
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRT 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.2 bits (98), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A+ G+   L   +      +  D EG T L +A  +G
Sbjct: 8   HQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG 47

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L  GAD         +AL  AC  G
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKG 80

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GAD  + +G   ES +    S G  + +K  L  G D +E D  G T L +A    
Sbjct: 57  QNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.5 bits (91), Expect = 7e-04
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L +GAD   E   G  ++  A   G
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALG 146

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              +   ++ LK+   +  D  + D  G +A ++A    
Sbjct: 5   SRINTWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADN 42

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A++ D + +K  L +G D  + D +G TAL++A   G
Sbjct: 67  HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           G+      G++    +   A  G  + ++  +A GAD + ED+ G T LH A   G
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GAD    V +   + +   A  G  E ++  L  GAD +  D EG T LH A  +G
Sbjct: 68  KNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 227 NEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYG 273
             +   +   A+  D + +K  L       DE D+EG T L+ A    
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN 50

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           +  GAD+  +D+ GRTA+ +A   G
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKG 189

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           GA    +     E+ +H  A    ++  K  L A AD + +D+ GRT LH A    
Sbjct: 46  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           N+ AD    V +  +S +H  A+V + +     L  GA+KD +++   T L  A   G
Sbjct: 145 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGY 272
           +D       +   +   +     +    + E            + E+ +G T LH A  +
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 273 G 273
            
Sbjct: 169 K 169

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A +G+A  ++   AAGA     +  G TALH AC   
Sbjct: 50  HLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR 89

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           G       G    + +H  + +G    +KN L  GA  +  + +  T LH A   G
Sbjct: 4   GIS-GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 58

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              A+          + +H  A  G  E +   L   A +     +G T LH A  YG
Sbjct: 101 ENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              A        +D++ +H  A +G    +K  L   A+ +   + G T LH A   G
Sbjct: 68  QNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             G   A     +  + +H  A  G AE +   L+  A+ +  +  G T LH     G
Sbjct: 233 QYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              A     +  +  + +H  A  G     +  L   A  +     G T LH A  + 
Sbjct: 134 EKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GA        + E+ +H  A  G  E  K  L   A  + +  + +T LH A   G
Sbjct: 35  QRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 91

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG-- 273
              A      G    + +H      + + +K  L  G         G T LH A      
Sbjct: 167 ERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225

Query: 274 EVC 276
           EV 
Sbjct: 226 EVA 228

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           +  G   D     G T LH A  YG
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYG 322

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA----LAAGADKDEEDSEGRTALHFAC 270
           D  GAD      N   + + H     D   ++      L  GAD +     G+T L  A 
Sbjct: 169 DEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 271 GYG 273
              
Sbjct: 228 EKK 230

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
              A  G  + LK  L+ GAD +E D  G TA   A  YG
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 8/25 (32%), Positives = 8/25 (32%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L  GAD       G T    A   G
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAG 83

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 212 TSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHF 268
              D        +    +E ++H    V +   L      +  G   D + ++G TALH+
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232

Query: 269 ACGYG 273
           A  Y 
Sbjct: 233 AALYN 237

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC-GYGEV 275
              A+ G  E ++  L AGA+ +  +S GR  +     G   V
Sbjct: 17  ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV 59

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
             AGA  D  D+ GR  +  A   G
Sbjct: 98  HRAGARLDVRDAWGRLPVDLAEELG 122

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           GA    +     E+ +H  A    ++  K  L A AD + +D+ GRT LH A    
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           N+ AD    V +  +S +H  A+V + +     L  GA+KD +++   T L  A   G
Sbjct: 113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AGAD + +D  GRT LH A   G
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNG 46

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AGAD + +D  GRT LH A   G
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNG 79

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
               +G+ E  +  L  GA+ D +D  G   +H A   G
Sbjct: 43  QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           GA+  +       +++H  A  G  + L+  L   AD + ED+EG   LH A   G
Sbjct: 60  GAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AGAD + +D  GRT LH A   G
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNG 46

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AGAD + +D  GRT LH A   G
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNG 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AGAD + +D  GRT LH A   G
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNG 79

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 226 GNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYG 273
           G     ++ + A  G  + LK  + A  +     D + RTALH+AC  G
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG 51

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           G+      G++    +   A  G  + ++  +A GAD + +D  G T L+ A  +G
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             G     +      +++  ++  G+ + ++  +    D    + EG TALH A   G
Sbjct: 26  AHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H+ A  G AE +K  L+ GAD +    +G T LH A   G
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             G +   +      + +   ++ G+ E ++  L  GAD      E  +AL  A   G
Sbjct: 23  RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           LA GAD   E   G T +  A   G
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALG 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG-- 273
             GA     +   D++ +H  AS G  + ++  L   AD +  +  G   LH+AC +G  
Sbjct: 60  MRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 274 EVC 276
           +V 
Sbjct: 119 QVA 121

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 234 HHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFAC-GYGEV 275
              A+ GD + ++  L       D  +  G+TAL     G   +
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GA           S VH  A  G  + LK  +  GAD +  D  G   +H A   G
Sbjct: 56  KQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 14/39 (35%)

Query: 235 HTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                G        L  GA  + +D+ G + +H A   G
Sbjct: 41  QVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           LAA +D    D+ G T L  A   G
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRG 144

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 12/112 (10%)

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMG--------LAVGGDATTSADNAGADEAEE 224
           +     S    ++M   + K+ +                L +              +A +
Sbjct: 29  LFQHFISANELSLMTL-SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 87

Query: 225 VGNEDESIVHHTASVGDAEGL---KNALAAGADKDEEDSEGRTALHFACGYG 273
            G + E I    A  G +  L      L +        +E   A   A   G
Sbjct: 88  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 6/60 (10%), Positives = 10/60 (16%), Gaps = 1/60 (1%)

Query: 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             + G              V   A     E L+       +     + G           
Sbjct: 276 PYHNGTT-VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKA 334

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 7e-04
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           GA    +      S +H  A  G     +  L AG  +D      RT LH A   G
Sbjct: 25  GAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L AG D +  D  G T LH AC  G
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQG 89

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 7e-04
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  A  G  +     + AGA+ D    + RT L  A    
Sbjct: 16  HAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN 55

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           G  +     +   + +         + +K  L+ G+D +  D+E    LH+A   G
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAE--------GLKNALAAGADKDEEDSEGRTALHFA 269
             +  +     + +++H  AS   AE          K  +AAGAD +  D +  T L  A
Sbjct: 116 SVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 270 CGYG 273
               
Sbjct: 174 VLAR 177

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 38.1 bits (90), Expect = 8e-04
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L  GAD   +D  G   LH AC YG
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYG 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.67
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.67
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.65
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.6
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.59
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.58
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.58
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.57
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.55
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.55
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.54
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.54
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.54
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.54
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.54
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.54
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.54
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.53
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.53
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.53
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.53
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.52
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.52
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.52
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.52
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.52
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.52
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.51
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.51
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.5
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.5
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.5
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.5
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.49
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.49
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.49
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.48
2rfa_A	232	Transient receptor potential cation channel subfa	99.47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.47
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.46
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.46
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.45
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.45
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.45
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.45
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.45
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.45
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.45
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.45
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.44
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.44
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.43
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.43
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.43
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.43
2etb_A	256	Transient receptor potential cation channel subfam	99.43
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.43
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.43
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.42
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.42
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.41
2rfa_A	232	Transient receptor potential cation channel subfa	99.41
2etb_A	256	Transient receptor potential cation channel subfam	99.41
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.4
2pnn_A	273	Transient receptor potential cation channel subfa	99.4
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.4
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.4
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.4
2pnn_A	273	Transient receptor potential cation channel subfa	99.4
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.4
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.39
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.38
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.35
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.34
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.33
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.32
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.28
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.26
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.24
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.02
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.99
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.77
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	98.03
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	97.92
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	97.25
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	97.24
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	96.68
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	92.99
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	91.81
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	86.77
1pve_A	72	HHR23B, UV excision repair protein RAD23 homolog B	84.26

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.67  E-value=1.4e-16  Score=119.48  Aligned_cols=72  Identities=26%  Similarity=0.314  Sum_probs=69.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        11 ~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~   82 (93)
T 1n0q_A           11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE   82 (93)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            567889999999999999999999999999999999999999999999999999999999999999999865

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.67  E-value=2.4e-16  Score=132.70  Aligned_cols=98  Identities=22%  Similarity=0.280  Sum_probs=81.6

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      +..+.+.+.....+.....+.++..+     ..++.+++++|++.|+++|.+|.+|+||||+||..|+.++|++|+++|+
T Consensus        53 ~~~ll~~gad~~~~d~~g~TpLh~A~-----~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           53 VKLLISKGADVNAKDSDGRTPLHHAA-----ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHhcccchhhhccCCCCHHHHHH-----HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            33444444444444444455666555     6788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCC
Q 023608          254 DKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++.+|.+|+||||+|+.+|+.+
T Consensus       128 d~~~~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A          128 DVNTSDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.65  E-value=5.5e-16  Score=130.46  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=83.1

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.|.+.-.......+.++..+     ..+..++++.|++.|++++.+|.+|+||||+||..|+.++|++||++
T Consensus        18 ~~v~~Ll~~Gadvn~~d~~g~t~l~~a~-----~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~   92 (169)
T 4gpm_A           18 DRVKDLIENGADVNASDSDGRTPLHHAA-----ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK   92 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3344445555544444444555665555     66788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |+++|.+|.+|+||||+||.+|+++
T Consensus        93 gadvn~~d~~G~TpLh~A~~~g~~~  117 (169)
T 4gpm_A           93 GADVNAKDSDGRTPLHHAAENGHKE  117 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999999865

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.60  E-value=4.3e-15  Score=118.57  Aligned_cols=99  Identities=20%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.......+.+|.++     ..++.+++++|++.|++++.+|..|.||||+||..|+.+++++|+++|
T Consensus        29 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  103 (136)
T 2jab_A           29 EVRILMANGADVNAKDEYGLTPLYLAT-----AHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG  103 (136)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444443333344556666655     567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+.+
T Consensus       104 ~~~~~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A          104 ADVNAQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCcCcCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999998865

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.59  E-value=3.1e-15  Score=115.89  Aligned_cols=72  Identities=25%  Similarity=0.284  Sum_probs=69.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        33 ~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  104 (110)
T 2zgd_A           33 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED  104 (110)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHH
Confidence            667889999999999999999999999999999999999999999999999999999999999999998865

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.58  E-value=4.8e-15  Score=116.13  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        21 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           21 DEVKDYVAKGEDVNRTLEGGRKPLHYAA-----DCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             HHHHHHHHTTCCTTSCCTTSSCHHHHHH-----HTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCccCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4455555555444333344455565555     56777888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCCcHHHHHHH
Q 023608          252 GADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      |++++.+|..|+||||+|+.
T Consensus        96 ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           96 GADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCCCcCCCCCCHHHHhCC
Confidence            88888888888888888853

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.58  E-value=2.8e-15  Score=119.67  Aligned_cols=97  Identities=19%  Similarity=0.097  Sum_probs=78.2

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNE-DESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~-g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      ++.+.+.+...-.......+.+|..+     . ++.+++++|++.|++++.+|.. |+||||+||..|+.+++++|+++|
T Consensus        28 v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  101 (136)
T 1d9s_A           28 VRQLLEAGADPNALNRFGRRPIQVMM-----M-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTCCTTTTTST-----T-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC
T ss_pred             HHHHHHcCCCcCCcCCCCCCHHHHHH-----c-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            33444444333222233334444443     6 8889999999999999999999 999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+.+
T Consensus       102 a~~~~~d~~g~tpl~~A~~~~~~~  125 (136)
T 1d9s_A          102 ARLDVCDAWGRLPVDLAEEQGHRD  125 (136)
T ss_dssp             CCCCCCSSSSSCHHHHHHHHTCHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.57  E-value=1.4e-14  Score=117.52  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        49 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           49 TTEVLLRAGVSRDARTKVDRTPLHMAA-----SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHH-----HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHH-----HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344445454443333344556666655     567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+.+
T Consensus       124 a~~~~~~~~g~t~l~~A~~~~~~~  147 (153)
T 1awc_B          124 ADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999865

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.55  E-value=1.4e-14  Score=117.64  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 023608          169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA  248 (280)
Q Consensus       169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~L  248 (280)
                      +-.++++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus        48 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  122 (162)
T 1ihb_A           48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAA-----RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL  122 (162)
T ss_dssp             SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3344555555555443333334445555554     55677888888888888888888888888888888888888888


Q ss_pred             HHcCCC-CCCCCCCCCcHHHHHHHcCCCC
Q 023608          249 LAAGAD-KDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       249 L~~GAd-vn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++|++ ++.+|..|+||||+|+.+|+.+
T Consensus       123 l~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A          123 VKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             HHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            888877 5888888888888888887754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.55  E-value=1e-14  Score=116.41  Aligned_cols=72  Identities=22%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+||.+|+.+
T Consensus        23 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~   94 (136)
T 2jab_A           23 RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLE   94 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            778899999999999999999999999999999999999999999999999999999999999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.54  E-value=2.3e-14  Score=115.92  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|+||||+|+.+|+.
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH
Confidence            44556666666666666666666666666666666666666666666 66666666666666666666654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.54  E-value=2.8e-14  Score=111.77  Aligned_cols=72  Identities=24%  Similarity=0.176  Sum_probs=69.0

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        16 ~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C           16 KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            678889999999999999999999999999999999999999999999999999999999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.54  E-value=3.1e-14  Score=117.43  Aligned_cols=72  Identities=21%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  160 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED  160 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            557778888888888888888888888888888888888888888888888888888888888888887754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.54  E-value=1.3e-14  Score=115.59  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=36.1

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        52 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           52 NHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             HcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            334445555555555555555555555555555555555555555555555555555555555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.54  E-value=2.7e-14  Score=115.98  Aligned_cols=97  Identities=20%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      ++.+.+.+...-.......+.++...     . ++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus        21 v~~Ll~~~~~~~~~~~~g~t~L~~A~-----~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   94 (162)
T 1ihb_A           21 LTSLLQNNVNVNAQNGFGRTALQVMK-----L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA   94 (162)
T ss_dssp             HHHHTTSCCCTTCCCTTSCCHHHHCC-----S-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCccccCccCccHHHHHH-----c-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34444444443333344445555433     5 88899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCC
Q 023608          254 DKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++.+|..|+||||+|+.+|+.+
T Consensus        95 ~~~~~~~~g~t~L~~A~~~~~~~  117 (162)
T 1ihb_A           95 DVNIEDNEGNLPLHLAAKEGHLR  117 (162)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999998864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.54  E-value=3.7e-14  Score=117.83  Aligned_cols=82  Identities=21%  Similarity=0.254  Sum_probs=66.7

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.++..+     ..++.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|
T Consensus        38 ~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  112 (179)
T 3f6q_A           38 HGFSPLHWAC-----REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA  112 (179)
T ss_dssp             TSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHH-----HcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            3345555554     56777888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus       113 ~~~~~~~  119 (179)
T 3f6q_A          113 CFWGQDQ  119 (179)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            8887754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.54  E-value=3.7e-14  Score=115.92  Aligned_cols=72  Identities=17%  Similarity=0.036  Sum_probs=56.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        51 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  122 (165)
T 3twr_A           51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE  122 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            556777788888888888888888888888888888888888888888888888888888888888777654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.53  E-value=1.5e-14  Score=118.06  Aligned_cols=71  Identities=23%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCc-HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          206 VGGDATTSADNAGADEAEEVGNEDES-IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~D~~g~T-pLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .++.+++++|++.|++++.+|..|+| |||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        54 ~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  125 (156)
T 1bi7_B           54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD  125 (156)
T ss_dssp             TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH
Confidence            57889999999999999999999999 999999999999999999999999999999999999999998864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.53  E-value=3.6e-14  Score=114.73  Aligned_cols=81  Identities=25%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.++. +     ..++.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        35 ~g~t~L~~-~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           35 FGKTALQV-M-----MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TSCCHHHH-S-----CTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCcHHHH-H-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            34455655 5     66888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus       109 ~~~~~~~  115 (156)
T 1bd8_A          109 VQEGHTA  115 (156)
T ss_dssp             HHHTCHH
T ss_pred             HHhChHH
Confidence            9998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.53  E-value=2.7e-14  Score=117.52  Aligned_cols=83  Identities=14%  Similarity=0.060  Sum_probs=74.0

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus        67 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  141 (172)
T 3v30_A           67 KERESALSLAS-----TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL  141 (172)
T ss_dssp             TTCCCHHHHHH-----HTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            34445566555     6688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       142 A~~~~~~~  149 (172)
T 3v30_A          142 AVALGYRK  149 (172)
T ss_dssp             HHHHTCHH
T ss_pred             HHHhCcHH
Confidence            99998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.53  E-value=2.5e-14  Score=115.96  Aligned_cols=83  Identities=25%  Similarity=0.226  Sum_probs=75.2

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      +...+.++..+     ..++.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+
T Consensus        32 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  106 (153)
T 1awc_B           32 WLGTSPLHLAA-----QYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHW  106 (153)
T ss_dssp             TTCCCHHHHHH-----HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            44456666655     5678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       107 A~~~~~~~  114 (153)
T 1awc_B          107 ATEHNHQE  114 (153)
T ss_dssp             HHHTTCHH
T ss_pred             HHHcCCHH
Confidence            99998864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.52  E-value=6.4e-15  Score=117.57  Aligned_cols=82  Identities=16%  Similarity=0.070  Sum_probs=73.7

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC-CCcHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALH  267 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~-G~TPLH  267 (280)
                      ....+.++..+     ..++.++++.|++.|++++.+|..|+||||+||. |+.+++++|+++|++++.+|.. |+||||
T Consensus        10 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A           10 GSSDAGLATAA-----ARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CCCSCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred             CCCccHHHHHH-----HcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence            33445565555     6788899999999999999999999999999999 9999999999999999999999 999999


Q ss_pred             HHHHcCCCC
Q 023608          268 FACGYGEVC  276 (280)
Q Consensus       268 ~Aa~~G~~e  276 (280)
                      +|+.+|+++
T Consensus        84 ~A~~~~~~~   92 (136)
T 1d9s_A           84 DAAREGFLD   92 (136)
T ss_dssp             HHHHHTCHH
T ss_pred             HHHHcCCHH
Confidence            999998864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.52  E-value=4.7e-14  Score=116.10  Aligned_cols=98  Identities=19%  Similarity=0.058  Sum_probs=80.5

Q ss_pred             HHHHHcCChhhhh-hhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          174 LDEIESGGPSAMM-KYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       174 ~e~i~~~g~~al~-~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +..+...+...+. ......+.++..+     ..++.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|
T Consensus        18 v~~ll~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   92 (172)
T 3v30_A           18 LKEHLRKGDNLVNKPDERGFTPLIWAS-----AFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD   92 (172)
T ss_dssp             HHHHHTTCSGGGGCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHcCcccccCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            3444444443222 2234445566555     668889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+++
T Consensus        93 ~~~~~~~~~g~t~L~~A~~~~~~~  116 (172)
T 3v30_A           93 VDINIYDWNGGTPLLYAVRGNHVK  116 (172)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999998865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.52  E-value=7.8e-15  Score=131.57  Aligned_cols=95  Identities=13%  Similarity=0.023  Sum_probs=73.4

Q ss_pred             HHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 023608          175 DEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD  254 (280)
Q Consensus       175 e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd  254 (280)
                      +.+...+...-.+.....+.++..+     ..|+.+++++|++.|+++|.+|..|+||||+||..|+.++|++||++|++
T Consensus       136 ~~Ll~~g~~~n~~d~~g~TpL~~A~-----~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad  210 (269)
T 4b93_B          136 KCLLDSNAKPNKKDLSGNTPLIYAC-----SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS  210 (269)
T ss_dssp             HHHHHTTCCSCCCCTTCCCHHHHHH-----HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHH-----HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3333334333333333445555544     66788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCC
Q 023608          255 KDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       255 vn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ++.+|.+|+||||+|+.+++
T Consensus       211 ~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          211 VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             SCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999987765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.52  E-value=4.7e-14  Score=108.99  Aligned_cols=82  Identities=26%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      .....++...     ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        34 ~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  108 (126)
T 1n0r_A           34 NGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA  108 (126)
T ss_dssp             TSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHH-----HcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            3445555554     56788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus       109 ~~~~~~~  115 (126)
T 1n0r_A          109 ARNGHLE  115 (126)
T ss_dssp             HHTTCHH
T ss_pred             HHcCcHH
Confidence            9998864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.52  E-value=2.2e-14  Score=128.63  Aligned_cols=97  Identities=18%  Similarity=0.071  Sum_probs=79.7

Q ss_pred             HHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 023608          175 DEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD  254 (280)
Q Consensus       175 e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd  254 (280)
                      +.+...+.............++...     ..+..++++.|++.|+++|.+|..|+||||+||..|+.++|++||++|++
T Consensus       103 ~~Ll~~~a~~~~~~~~g~t~l~~a~-----~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad  177 (269)
T 4b93_B          103 PLLLKHGANAGARNADQAVPLHLAC-----QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS  177 (269)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC
T ss_pred             HHHHhcCCCcCccCCCCCCcccccc-----ccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            3444444444333344444554444     56778999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCC
Q 023608          255 KDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       255 vn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +|.+|..|+||||+||.+|+++
T Consensus       178 vn~~~~~g~t~Lh~A~~~g~~~  199 (269)
T 4b93_B          178 INASNNKGNTALHEAVIEKHVF  199 (269)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CCccccCCCcHHHHHHHcCCHH
Confidence            9999999999999999999865

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.52  E-value=2.1e-14  Score=125.53  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=40.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..|+.++++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||.+|++
T Consensus        46 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~  116 (239)
T 1ycs_B           46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV  116 (239)
T ss_dssp             HHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.51  E-value=5.4e-14  Score=115.19  Aligned_cols=72  Identities=15%  Similarity=0.111  Sum_probs=59.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  149 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS  149 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            556778888888888888888888888888888888888888888888888888888888888888877754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.51  E-value=5.1e-14  Score=118.11  Aligned_cols=83  Identities=22%  Similarity=0.120  Sum_probs=74.1

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.+|.++     ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        99 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  173 (192)
T 2rfm_A           99 FSGKTPLMWSI-----IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS  173 (192)
T ss_dssp             TTSCCHHHHHH-----HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            34455666555     5678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       174 A~~~~~~~  181 (192)
T 2rfm_A          174 ARIFGRQE  181 (192)
T ss_dssp             HHHTTCHH
T ss_pred             HHHhCcHH
Confidence            99999865

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.51  E-value=8.5e-14  Score=114.81  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=82.3

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.......+.++.++     ..++.+++++|++.|++++..|..|+||||+||..|+.+++++|+++|
T Consensus        29 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  103 (169)
T 2y1l_E           29 EVRILMANGADVNAEDASGWTPLHLAA-----FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG  103 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444445443333344556666655     668889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+++
T Consensus       104 ~~~~~~~~~g~t~L~~A~~~~~~~  127 (169)
T 2y1l_E          104 ADVNANDMEGHTPLHLAAMFGHLE  127 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999998864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.50  E-value=6.3e-14  Score=114.76  Aligned_cols=83  Identities=24%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.++..+     ..++.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        34 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  108 (167)
T 3v31_A           34 EEGFTPLMWAA-----AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY  108 (167)
T ss_dssp             TTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHH
Confidence            33445666555     6688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       109 A~~~~~~~  116 (167)
T 3v31_A          109 AVHGNHVK  116 (167)
T ss_dssp             HHHTTCHH
T ss_pred             HHHcCCHH
Confidence            99998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.50  E-value=3e-14  Score=128.62  Aligned_cols=84  Identities=15%  Similarity=0.083  Sum_probs=73.1

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..+.+|.++.. + ..+..+++++|++.|+++|.+|..|+||||+||..|+.++|++||++|++++.+|..|+||||+|+
T Consensus       169 g~t~Lh~A~~~-~-~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  246 (278)
T 1dcq_A          169 DETALHLAVRS-V-DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK  246 (278)
T ss_dssp             TCBHHHHHHHH-C-CTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcchHHHHh-c-ccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH
Confidence            34555555511 1 126789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+|+.+
T Consensus       247 ~~~~~~  252 (278)
T 1dcq_A          247 RLKHEH  252 (278)
T ss_dssp             HTTCHH
T ss_pred             HcCCHH
Confidence            999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.50  E-value=1.6e-14  Score=111.59  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ....++.++     ..++.++++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         9 g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            9 GNTPLHNAA-----KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCCHHHHHH-----HHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            345555555     567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+|+.+
T Consensus        84 ~~~~~~   89 (115)
T 2l6b_A           84 KNGHHE   89 (115)
T ss_dssp             TTTCHH
T ss_pred             HCCCHH
Confidence            988754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.50  E-value=6.8e-14  Score=117.23  Aligned_cols=84  Identities=20%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH  267 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH  267 (280)
                      ....+.+|..+     ..++.+++++|++.|++++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        74 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  148 (183)
T 3deo_A           74 ENGRTALLFVA-----GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE  148 (183)
T ss_dssp             TTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHH
Confidence            44455666655     5678899999999999999998 89999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCC
Q 023608          268 FACGYGEVCS  277 (280)
Q Consensus       268 ~Aa~~G~~e~  277 (280)
                      +|+..++.+.
T Consensus       149 ~A~~~~~~~~  158 (183)
T 3deo_A          149 LAREILKTTP  158 (183)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHhccCcc
Confidence            9998766543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.49  E-value=3.9e-14  Score=118.81  Aligned_cols=82  Identities=16%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.++.++     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        67 ~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  141 (192)
T 2rfm_A           67 EGSTALIWAV-----KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA  141 (192)
T ss_dssp             TSCCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred             cCccHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            3445565555     66888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus       142 ~~~~~~~  148 (192)
T 2rfm_A          142 SKYGRSE  148 (192)
T ss_dssp             HHHTCHH
T ss_pred             HHcCCHH
Confidence            9998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.49  E-value=1.5e-14  Score=115.24  Aligned_cols=82  Identities=13%  Similarity=0.094  Sum_probs=74.2

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.+|..+     ..++.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         9 ~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            9 RGETLLHIAS-----IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             TCCCHHHHHH-----HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence            3445566555     56788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus        84 ~~~~~~~   90 (137)
T 3c5r_A           84 AKNGHVD   90 (137)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            9999865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.49  E-value=6.7e-14  Score=125.31  Aligned_cols=81  Identities=20%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~A  269 (280)
                      ..+.+|..+     ..++.+++++|++.|+++|.+|..|+||||+||..|+.++|++|++ .|++++.+|..|+||||+|
T Consensus       183 g~tpLh~A~-----~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          183 GQTALMLAV-----SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA  257 (276)
T ss_dssp             CCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence            445555554     6688899999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+.+
T Consensus       258 ~~~g~~~  264 (276)
T 4hbd_A          258 LDAGQSE  264 (276)
T ss_dssp             HHHTCHH
T ss_pred             HHcCCHH
Confidence            9999865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.48  E-value=1.2e-13  Score=121.00  Aligned_cols=98  Identities=17%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      ++.+.+.+...-.......+.+|.++     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       140 v~~Ll~~g~~~~~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          140 LEDLINSHADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            33444444443333344456666555     5678899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCC
Q 023608          254 DKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++.+|..|+||||+|+.+||.+
T Consensus       215 ~~~~~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          215 NRDITDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CccccccCCCCHHHHHHHcCCHH
Confidence            99999999999999999999865

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.47  E-value=1.6e-13  Score=117.75  Aligned_cols=82  Identities=21%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCC-------------CCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGN-------------EDESIVHHTASVGDAEGLKNALAAGADKD  256 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~-------------~g~TpLh~Aa~~G~~eivk~LL~~GAdvn  256 (280)
                      ...+.++..+     ..++.+++++|++.|++++.++.             .|+||||+|+..|+.++|++|+++|++++
T Consensus        74 ~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           74 EGQTALHIAV-----INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             TTCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCcCHHHHHH-----HcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            3445555555     67888999999999999999876             79999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCCC
Q 023608          257 EEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       257 ~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+|..|+||||+|+.+|+.+
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHH
T ss_pred             CCCCCCCCHHHHHHHcCChH
Confidence            99999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.47  E-value=2.3e-13  Score=116.07  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHF  268 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G-Advn~~D~~G~TPLH~  268 (280)
                      ...+.++..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+
T Consensus       106 ~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~  180 (228)
T 2dzn_A          106 QGVTCLHLAV-----GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  180 (228)
T ss_dssp             TCCCHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             CCCCHHHHHH-----HcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHH
Confidence            3445555444     567788899999999999999999999999999999999999999988 8899999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       181 A~~~~~~~  188 (228)
T 2dzn_A          181 ALAEGHGD  188 (228)
T ss_dssp             HHHTTCHH
T ss_pred             HHHcCCHH
Confidence            99888754

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.46  E-value=9.6e-14  Score=134.74  Aligned_cols=85  Identities=15%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ...+.+|.+...  +..++.+++++|++.|+++|.+|..|+||||+||.+|+.++|++||++|++++.+|..|+||||+|
T Consensus       170 ~g~t~Lh~A~~~--a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  247 (497)
T 3lvq_E          170 PEELVLHLAVKV--ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA  247 (497)
T ss_dssp             SCBCHHHHHHHT--CCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHH
T ss_pred             ccchHHHHHHHh--cccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            344556655320  246888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+||.+
T Consensus       248 ~~~~~~~  254 (497)
T 3lvq_E          248 RKKHHKE  254 (497)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            9999865

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.46  E-value=1.4e-13  Score=115.39  Aligned_cols=72  Identities=25%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D-~~G~TPLH~Aa~~G~~e  276 (280)
                      +..|+.++++.|++ |++++.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+|+.+|+.+
T Consensus        52 ~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~  124 (183)
T 3deo_A           52 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  124 (183)
T ss_dssp             HHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHH
Confidence            37788899999999 99999999999999999999999999999999999999998 89999999999999865

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.46  E-value=9.4e-14  Score=113.51  Aligned_cols=98  Identities=17%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        56 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  130 (165)
T 3twr_A           56 SVVEYLLQHGADVHAKDKGGLVPLHNAC-----SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH  130 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHH-----HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3444444444443333344456666655     66888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      |++++.+|..|+||||+|+. |+.
T Consensus       131 ga~~~~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A          131 GADPTKKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             TCCTTCCCTTSCCTGGGSCT-TCH
T ss_pred             CCCCcccCCCCCChhHhHhc-CCh
Confidence            99999999999999999765 553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.45  E-value=5.9e-14  Score=120.52  Aligned_cols=98  Identities=17%  Similarity=0.036  Sum_probs=76.9

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAG-ADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~-gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      +++.+...+...........+.+|.++     ..++.+++++|++. |++++.+|..|+||||+||..|+.++|++|+++
T Consensus        88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  162 (222)
T 3ehr_A           88 WLRECLDNRVGVNGLDKAGSTALYWAC-----HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK  162 (222)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCccccCCCCCCHHHHHH-----HcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344444444443333344455666555     66788999999998 999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      |++++.+|..|+||||+|+..|+.
T Consensus       163 ga~~~~~~~~g~t~l~~A~~~~~~  186 (222)
T 3ehr_A          163 GARTDLRNIEKKLAFDMATNAACA  186 (222)
T ss_dssp             TCCSCCCCTTSCCHHHHCCSHHHH
T ss_pred             CCCCccccCCCCCHHHHhcchhHH
Confidence            999999999999999999866543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.45  E-value=3.5e-13  Score=114.73  Aligned_cols=100  Identities=17%  Similarity=0.053  Sum_probs=82.0

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+...-.......+.+|.++     ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       106 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          106 GMLEDLINSHADVNAVDDLGKSALHWAA-----AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcCcCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            3444444454443333344556666655     66788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |++++.+|..|+||||+|+.+|+.+
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~  205 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHD  205 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCCCccccccCCCHHHHHHHhcchH
Confidence            9999999999999999999998864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=120.80  Aligned_cols=69  Identities=19%  Similarity=0.257  Sum_probs=36.7

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          206 VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .|+.++++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||.+|+
T Consensus        31 ~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           31 TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            344455555555555555555555555555555555555555555555555555555555555555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.45  E-value=2.6e-13  Score=119.39  Aligned_cols=82  Identities=21%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH  267 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH  267 (280)
                      ....+.+|..+     ..|+.+++++|++.|++++.+| ..|+||||+||.+|+.++|++|+++|++++.+|..|+||||
T Consensus        75 ~~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  149 (244)
T 3ui2_A           75 ENGRTALLFVA-----GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE  149 (244)
T ss_dssp             TTSCBHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            34456666655     6688899999999999999998 88999999999999999999999999999999999999999


Q ss_pred             HHHHcCCC
Q 023608          268 FACGYGEV  275 (280)
Q Consensus       268 ~Aa~~G~~  275 (280)
                      +|+..++.
T Consensus       150 ~A~~~~~~  157 (244)
T 3ui2_A          150 LAREILKT  157 (244)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            99975543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.45  E-value=1e-13  Score=119.00  Aligned_cols=79  Identities=13%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      +.++.++     ..|+.++++.|++.|++++.+|..|+||||+||..|+.++|++|++. |++++.+|..|+||||+||.
T Consensus        75 t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           75 NPLHEAA-----KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             CHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccc-----ccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            4455444     66888999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             cCCCC
Q 023608          272 YGEVC  276 (280)
Q Consensus       272 ~G~~e  276 (280)
                      +|+.+
T Consensus       150 ~~~~~  154 (222)
T 3ehr_A          150 KGYAD  154 (222)
T ss_dssp             HTCHH
T ss_pred             cCCHH
Confidence            99865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.45  E-value=2.6e-13  Score=128.08  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             ChHHHHHHHHcCChhhhhhh--cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 023608          169 SLKPILDEIESGGPSAMMKY--WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLK  246 (280)
Q Consensus       169 ~~~~i~e~i~~~g~~al~~~--~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk  246 (280)
                      +-..++..+...+.......  ....+.+|.++     ..++.+++++|++.|+++|.+|..|+||||+|+..|+.++|+
T Consensus       211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa-----~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~  285 (368)
T 3jue_A          211 PSLPTMADALAHGADVNWVNGGQDNATPLIQAT-----AANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC  285 (368)
T ss_dssp             CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccccccCCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            43445555555555443332  34445666555     668889999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          247 NALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       247 ~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +||++|++++.+|..|+||||+|+..|+.+
T Consensus       286 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~  315 (368)
T 3jue_A          286 LFLKRGADLGARDSEGRDPLTIAMETANAD  315 (368)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHCcCCCCCcCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999999999998864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=124.91  Aligned_cols=70  Identities=16%  Similarity=0.063  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          207 GGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +..+++++|++.|+++|.+|..|+||||+|+.+|+.++|++||++|++++.+|..|+||||+|+.+|+.+
T Consensus       204 ~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~  273 (301)
T 2b0o_E          204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE  273 (301)
T ss_dssp             TTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.45  E-value=1.9e-13  Score=105.54  Aligned_cols=72  Identities=26%  Similarity=0.314  Sum_probs=68.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|.+++..|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus        11 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   82 (126)
T 1n0r_A           11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE   82 (126)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHH
Confidence            567889999999999999999999999999999999999999999999999999999999999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.44  E-value=1.4e-13  Score=122.31  Aligned_cols=71  Identities=17%  Similarity=0.223  Sum_probs=43.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..|+.++++.|++.|+++|..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|++
T Consensus        49 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~  119 (299)
T 1s70_B           49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (299)
T ss_dssp             HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence            44555666666666666666666666666666666666666666666666666666666666666665554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.44  E-value=1.5e-13  Score=126.35  Aligned_cols=100  Identities=14%  Similarity=0.083  Sum_probs=81.0

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCC-----ccccCCCCCcHHHHHHhcCCHHHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADE-----AEEVGNEDESIVHHTASVGDAEGLK  246 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gad-----vn~~D~~g~TpLh~Aa~~G~~eivk  246 (280)
                      ++++.+...+...-.......+.++.++     ..++.+++++|++.|++     +|..|..|+||||+||..|+.++|+
T Consensus       154 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          154 EMIKILVQLGASPTAKDKADETPLMRAM-----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHH-----HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHH
Confidence            3334444334333333334455565555     67888999999999999     9999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          247 NALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       247 ~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +||++|++++.+|..|+||||+|+.+|+.+
T Consensus       229 ~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~  258 (364)
T 3ljn_A          229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVL  258 (364)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHHHHTCCHH
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Confidence            999999999999999999999999999865

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.44  E-value=2.1e-13  Score=119.13  Aligned_cols=99  Identities=12%  Similarity=-0.017  Sum_probs=80.4

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.......+.+|..+     ..++.+++++|++.|+++|.+|..|+||||+||..|+.++|++|+++|
T Consensus        52 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           52 LVQRIIYEVDDPSLPNDEGITALHNAV-----CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             HHHHHTSTTSSCCCCCTTSCCHHHHHH-----HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444433333344456666655     668889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC-cHHHHH--HHcCCCC
Q 023608          253 ADKDEEDSEGR-TALHFA--CGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~-TPLH~A--a~~G~~e  276 (280)
                      ++++.+|..|. ||||+|  +..|+.+
T Consensus       127 a~~~~~~~~~~~t~l~~a~~~~~g~~~  153 (239)
T 1ycs_B          127 AAVFAMTYSDMQTAADKCEEMEEGYTQ  153 (239)
T ss_dssp             CCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             CCcceecCCCCcchHHHHHHhhhccHH
Confidence            99999998887 999999  6677765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.44  E-value=2.7e-13  Score=118.84  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.++.++     ..+..+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+
T Consensus       122 ~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  196 (253)
T 1yyh_A          122 HDGTTPLILAA-----RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  196 (253)
T ss_dssp             TTCCCHHHHHH-----HHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHH-----HcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            33445555555     5577789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       197 A~~~~~~~  204 (253)
T 1yyh_A          197 AAREGSYE  204 (253)
T ss_dssp             HHHHTCHH
T ss_pred             HHHCCCHH
Confidence            99998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.43  E-value=2e-13  Score=120.02  Aligned_cols=72  Identities=25%  Similarity=0.319  Sum_probs=68.3

Q ss_pred             hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED-SEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D-~~G~TPLH~Aa~~G~~e  276 (280)
                      +..|+.++++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+||.+|+++
T Consensus        53 ~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~  125 (244)
T 3ui2_A           53 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  125 (244)
T ss_dssp             HTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            47788999999999 99999999999999999999999999999999999999998 88999999999999865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.43  E-value=1.6e-13  Score=119.93  Aligned_cols=82  Identities=11%  Similarity=0.094  Sum_probs=73.3

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHh---CCCCccccCCCCCcHHHHHHhcCC---------HHHHHHHHHcCCCC--
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNA---GADEAEEVGNEDESIVHHTASVGD---------AEGLKNALAAGADK--  255 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~---~gadvn~~D~~g~TpLh~Aa~~G~---------~eivk~LL~~GAdv--  255 (280)
                      ...+.+|..+     ..++.+++++|++   .|++++.+|..|+||||+||..++         .+++++|+++|+++  
T Consensus       139 ~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~  213 (260)
T 3jxi_A          139 FGELPLSLAA-----CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP  213 (260)
T ss_dssp             SCSSHHHHHH-----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccc
Confidence            3455666555     6788899999999   999999999999999999999888         79999999999998  


Q ss_pred             -----CCCCCCCCcHHHHHHHcCCCC
Q 023608          256 -----DEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       256 -----n~~D~~G~TPLH~Aa~~G~~e  276 (280)
                           +.+|..|+||||+|+.+|+++
T Consensus       214 ~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          214 DTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccchhhcccCCCCCHHHHHHHcCCHH
Confidence                 779999999999999999875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.43  E-value=5.4e-13  Score=114.16  Aligned_cols=66  Identities=20%  Similarity=0.112  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          206 VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      .++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       149 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             cCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            344455555555555555555555555555555555555555555555555555555555555543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.43  E-value=1.2e-13  Score=117.73  Aligned_cols=62  Identities=15%  Similarity=0.043  Sum_probs=33.1

Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHc
Q 023608          211 TTSADNAGADEAEEVGNEDESIVHHTASVGD------AEGLKNALAAGADKDEEDSEGR-TALHFACGY  272 (280)
Q Consensus       211 ~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~------~eivk~LL~~GAdvn~~D~~G~-TPLH~Aa~~  272 (280)
                      ++++|++.|+++|.+|..|+||||+|+.+++      .++|++||++|++||.+|..|+ ||||+|+.+
T Consensus        57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~  125 (186)
T 3t8k_A           57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY  125 (186)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc
Confidence            4555555555555555555555555555544      3445555555555555555555 555555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.43  E-value=4.5e-13  Score=114.03  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.++.++     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        90 ~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           90 HDGTTPLILAA-----RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             TTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCcHHHHHH-----HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            33445565555     5678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       165 A~~~~~~~  172 (223)
T 2f8y_A          165 AAREGSYE  172 (223)
T ss_dssp             HHHHTCHH
T ss_pred             HHHcCCHH
Confidence            99998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.43  E-value=6.4e-14  Score=119.37  Aligned_cols=105  Identities=12%  Similarity=-0.017  Sum_probs=80.1

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhh-ccCCHHHHHHHHhCCCCccccCCCCC-cHHHHHHhcC-----CHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGL-AVGGDATTSADNAGADEAEEVGNEDE-SIVHHTASVG-----DAEG  244 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~-~~g~~~~v~~Ll~~gadvn~~D~~g~-TpLh~Aa~~G-----~~ei  244 (280)
                      .+++.+.+.|...-.+.....+.+|.++..-.. .....+++++|+++|+++|.+|..|+ ||||+|+..+     +.++
T Consensus        56 ~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~i  135 (186)
T 3t8k_A           56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL  135 (186)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHH
Confidence            345556666666555555555666665522100 00124789999999999999999999 9999999954     4579


Q ss_pred             HHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          245 LKNALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       245 vk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++|++ +|++++.+|..|+||||+|+.+|+.+
T Consensus       136 v~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~  168 (186)
T 3t8k_A          136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI  168 (186)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHH
T ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            999999 99999999999999999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.43  E-value=2e-13  Score=119.34  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHh---CCCCccccCCCCCcHHHHHHh--cCCHH-------HHHHHHHcCCCC---
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNA---GADEAEEVGNEDESIVHHTAS--VGDAE-------GLKNALAAGADK---  255 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~---~gadvn~~D~~g~TpLh~Aa~--~G~~e-------ivk~LL~~GAdv---  255 (280)
                      ..+.+|..+     ..++.+++++|++   .|++++.+|..|+||||+||.  .++.+       ++++|+++|+++   
T Consensus       136 g~tpL~~A~-----~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~  210 (256)
T 2etb_A          136 GELPLSLAA-----CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT  210 (256)
T ss_dssp             CSSHHHHHH-----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccc
Confidence            455666555     6688899999999   999999999999999999998  88888       999999999999   


Q ss_pred             ----CCCCCCCCcHHHHHHHcCCCC
Q 023608          256 ----DEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       256 ----n~~D~~G~TPLH~Aa~~G~~e  276 (280)
                          +.+|..|+||||+|+.+|+.+
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          211 VQLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccCCCCCCHHHHHHHhCCHH
Confidence                999999999999999999865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.43  E-value=1.1e-13  Score=114.91  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=79.9

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        53 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  127 (179)
T 3f6q_A           53 AVVEMLIMRGARINVMNRGDDTPLHLAA-----SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN  127 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3344444444443333344456666655     66888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      |++++.+|..|+||||+|+..++
T Consensus       128 ga~~~~~~~~g~tpl~~A~~~~~  150 (179)
T 3f6q_A          128 GALVSICNKYGEMPVDKAKAPLR  150 (179)
T ss_dssp             TCCSSBCCTTSCCGGGGSCHHHH
T ss_pred             CCCcchhccCCCCcHHHHHHHHH
Confidence            99999999999999999986544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.43  E-value=3.9e-13  Score=117.45  Aligned_cols=80  Identities=14%  Similarity=0.046  Sum_probs=72.2

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC--------------CCCCcHHHHHHhcCCHHHHHHHHH---cC
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG--------------NEDESIVHHTASVGDAEGLKNALA---AG  252 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D--------------~~g~TpLh~Aa~~G~~eivk~LL~---~G  252 (280)
                      ...+.+|..+     ..|+.+++++|++.|++++.+|              ..|+||||+||..|+.++|++|++   +|
T Consensus        92 ~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           92 RGQTALHIAI-----ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             ESBCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            4445666555     6788999999999999999999              689999999999999999999999   99


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ++++.+|..|+||||+||.+|+
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CCCcccCCCCCcHHHHHHHhcc
Confidence            9999999999999999998765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.43  E-value=3.9e-13  Score=117.78  Aligned_cols=72  Identities=18%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNE-DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~-g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++..+.. |+||||+||.+|+.++|++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus       167 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH
Confidence            567778888888888888888754 888888888888888888888888888888888888888888877754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.42  E-value=2.6e-13  Score=116.62  Aligned_cols=99  Identities=17%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.........++..+     ..+..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          126 LVKLLLSKGSDINIRDNEENICLHWAA-----FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD  200 (237)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHH-----HCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence            344444444433333334445555554     557788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..|+||||+|+.+|+++
T Consensus       201 ad~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          201 SDVTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             CCTTCCCTTSCCHHHHSCTTCHHH
T ss_pred             CCCCccCCCCCCHHHHHHHHHHHH
Confidence            999999999999999998887653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.42  E-value=4.8e-13  Score=112.06  Aligned_cols=82  Identities=16%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHhcCC-----HHHHHHHHHcCCCCCCCCCCCC
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGA-DEAEEVGNEDESIVHHTASVGD-----AEGLKNALAAGADKDEEDSEGR  263 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~g-advn~~D~~g~TpLh~Aa~~G~-----~eivk~LL~~GAdvn~~D~~G~  263 (280)
                      ...+.++..+     ..++.+++++|++.| ++++.+|..|+||||+|+..++     .+++++|+++|++++.+|..|+
T Consensus       105 ~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~  179 (201)
T 3hra_A          105 YGGNALIPAA-----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR  179 (201)
T ss_dssp             TSCCSHHHHH-----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcHHHHHH-----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCC
Confidence            3445565555     668889999999998 9999999999999999999998     9999999999999999999999


Q ss_pred             cHHHHHHHcCCCC
Q 023608          264 TALHFACGYGEVC  276 (280)
Q Consensus       264 TPLH~Aa~~G~~e  276 (280)
                      ||||+|+.+|+.+
T Consensus       180 t~l~~A~~~~~~~  192 (201)
T 3hra_A          180 TAMDYANQKGYTE  192 (201)
T ss_dssp             CHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHh
Confidence            9999999998865

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.42  E-value=1e-13  Score=113.00  Aligned_cols=79  Identities=19%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRT-ALHFAC  270 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~T-PLH~Aa  270 (280)
                      .+.++..+     ..++.+++++|++.|++++.+|..|+||||+|+ .|+.++|++|+++|++++.+|..|+| |||+|+
T Consensus        13 ~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           13 ADWLATAA-----ARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             TTHHHHHH-----HHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             hHHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            34555555     668889999999999999999999999999986 99999999999999999999999999 999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+|+++
T Consensus        87 ~~~~~~   92 (156)
T 1bi7_B           87 REGFLD   92 (156)
T ss_dssp             HHTCHH
T ss_pred             HCCCHH
Confidence            998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.42  E-value=7.2e-13  Score=119.18  Aligned_cols=81  Identities=17%  Similarity=0.028  Sum_probs=73.9

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..+.+|..+     ..|+.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus        58 g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           58 KSTPLHLAA-----GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             CCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            345566555     678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+|+++
T Consensus       133 ~~~~~~  138 (351)
T 3utm_A          133 SKNRVE  138 (351)
T ss_dssp             HTTCHH
T ss_pred             HcCCHH
Confidence            998865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.41  E-value=1e-13  Score=118.99  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=60.5

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..+.++.++     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus       150 g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  224 (241)
T 1k1a_A          150 GRSPLIHAV-----ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  224 (241)
T ss_dssp             CCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             CCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            334454444     556777888888888888888888888888888888888888888888888888888888888877


Q ss_pred             HcCCC
Q 023608          271 GYGEV  275 (280)
Q Consensus       271 ~~G~~  275 (280)
                      .+|+.
T Consensus       225 ~~~~~  229 (241)
T 1k1a_A          225 SRRVI  229 (241)
T ss_dssp             SHHHH
T ss_pred             hcCcH
Confidence            66554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.41  E-value=6.6e-13  Score=113.87  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=73.3

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHH----HHHHHcCCCC------CCCC
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGL----KNALAAGADK------DEED  259 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eiv----k~LL~~GAdv------n~~D  259 (280)
                      ...+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++    ++|+++|+++      +.+|
T Consensus       120 ~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~  194 (232)
T 2rfa_A          120 YGEHPLSFAA-----CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPN  194 (232)
T ss_dssp             CCSSHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCC
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCC
Confidence            3455566555     56788999999999999999999999999999999999988    9999999988      5899


Q ss_pred             CCCCcHHHHHHHcCCCC
Q 023608          260 SEGRTALHFACGYGEVC  276 (280)
Q Consensus       260 ~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+||||+|+.+|+.+
T Consensus       195 ~~g~tpl~~A~~~g~~~  211 (232)
T 2rfa_A          195 NQGLTPFKLAGVEGNIV  211 (232)
T ss_dssp             TTSCCHHHHHHHHTCHH
T ss_pred             CCCCCHHHHHHHcCCHH
Confidence            99999999999999865

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.41  E-value=6.3e-13  Score=116.10  Aligned_cols=80  Identities=14%  Similarity=-0.013  Sum_probs=71.4

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCC-------------CCcHHHHHHhcCCHHHHHHHHH---cCCC
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNE-------------DESIVHHTASVGDAEGLKNALA---AGAD  254 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~-------------g~TpLh~Aa~~G~~eivk~LL~---~GAd  254 (280)
                      ..+.+|.++     ..++.+++++|++.|++++.+|..             |+||||+||..|+.++|++|++   +|++
T Consensus        90 g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           90 GHSALHIAI-----EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             TCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            345555555     678899999999999999999986             9999999999999999999999   9999


Q ss_pred             CCCCCCCCCcHHHHHHH--cCCC
Q 023608          255 KDEEDSEGRTALHFACG--YGEV  275 (280)
Q Consensus       255 vn~~D~~G~TPLH~Aa~--~G~~  275 (280)
                      ++.+|..|+||||+||.  .++.
T Consensus       165 ~n~~d~~g~TpLh~A~~~~~~~~  187 (256)
T 2etb_A          165 LEATDSLGNTVLHALVMIADNSP  187 (256)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCH
T ss_pred             cCccCCCCCCHHHHHHHcccCCc
Confidence            99999999999999998  5554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=119.94  Aligned_cols=96  Identities=13%  Similarity=-0.026  Sum_probs=77.7

Q ss_pred             HHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 023608          176 EIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADK  255 (280)
Q Consensus       176 ~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdv  255 (280)
                      .+.+.+...-.......+.++.++     ..++.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|+++
T Consensus        39 ~Ll~~g~~~~~~d~~g~tpLh~A~-----~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           39 QAVKEMNDPSQPNEEGITALHNAI-----CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             HHHHHSSCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            333333333333344456666555     668899999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCCcHHHHH--HHcCCCC
Q 023608          256 DEED-SEGRTALHFA--CGYGEVC  276 (280)
Q Consensus       256 n~~D-~~G~TPLH~A--a~~G~~e  276 (280)
                      +.++ ..|+||||+|  +..|+.+
T Consensus       114 ~~~~~~~g~tpL~~A~a~~~~~~~  137 (229)
T 2vge_A          114 FATTLSDGATAFEKCDPYREGYAD  137 (229)
T ss_dssp             TCCCSSTTCCTGGGCCTTSTTHHH
T ss_pred             ccccCCCCCCHHHHHHHHhcChHH
Confidence            9987 6999999999  7766543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.40  E-value=1.2e-12  Score=111.54  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=74.2

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCC--CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGA--DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTAL  266 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~g--advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPL  266 (280)
                      ....+.++.++     ..++.++++.|++.|  ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus        70 ~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  144 (228)
T 2dzn_A           70 DSGWTPFHIAC-----SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL  144 (228)
T ss_dssp             TTSCCHHHHHH-----HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH
Confidence            34445566555     567889999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 023608          267 HFACGYGEVC  276 (280)
Q Consensus       267 H~Aa~~G~~e  276 (280)
                      |+|+.+|+++
T Consensus       145 ~~A~~~~~~~  154 (228)
T 2dzn_A          145 HRAASVGSLK  154 (228)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHcCCHH
Confidence            9999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.40  E-value=3.9e-13  Score=118.72  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHh---CCCCccccCCCCCcHHHHHHhcCC---------HHHHHHHHHcCCCCC-
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNA---GADEAEEVGNEDESIVHHTASVGD---------AEGLKNALAAGADKD-  256 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~---~gadvn~~D~~g~TpLh~Aa~~G~---------~eivk~LL~~GAdvn-  256 (280)
                      ...+.+|..+     ..++.+++++|++   .|++++.+|..|+||||+||..|+         .+++++|+++|++++ 
T Consensus       147 ~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          147 FGELPLSLAA-----CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCBSHHHHHH-----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence            3455666555     6688899999999   999999999999999999999998         899999999999997 


Q ss_pred             ------CCCCCCCcHHHHHHHcCCCC
Q 023608          257 ------EEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       257 ------~~D~~G~TPLH~Aa~~G~~e  276 (280)
                            .+|..|+||||+|+.+|+.+
T Consensus       222 ~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          222 TLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccCCCCCCHHHHHHHhChHH
Confidence                  48999999999999999865

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.40  E-value=8.1e-13  Score=113.34  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ....++..+     ..++.+++++|++.|++++..+ ..|.||||+|+.+|+.+++++|+++|++++.+|..|+||||+|
T Consensus       116 g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  190 (241)
T 1k1a_A          116 GLTALHVAV-----NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA  190 (241)
T ss_dssp             SCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCcHHHHHH-----HcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            345555544     5678899999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+|+++
T Consensus       191 ~~~~~~~  197 (241)
T 1k1a_A          191 SGRGLLP  197 (241)
T ss_dssp             HHHTCHH
T ss_pred             HHcCCHH
Confidence            9998864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.40  E-value=1.3e-12  Score=112.25  Aligned_cols=100  Identities=15%  Similarity=0.050  Sum_probs=80.3

Q ss_pred             HHHHHHHcCChhhh-hhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608          172 PILDEIESGGPSAM-MKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA  250 (280)
Q Consensus       172 ~i~e~i~~~g~~al-~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~  250 (280)
                      ++++.+.+.++... .........++.++     ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        91 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           91 EVVQYLLSNGQMDVNCQDDGGWTPMIWAT-----EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             HHHHHHHTTTCCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCcccCCCCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            34444554442222 22233445555554     6678899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          251 AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       251 ~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +|++++.+|..|+||||+|+.+|+.+
T Consensus       166 ~g~~~~~~~~~g~t~L~~A~~~~~~~  191 (237)
T 3b7b_A          166 AKCDLHAVNIHGDSPLHIAARENRYD  191 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHh
Confidence            99999999999999999999998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.40  E-value=1.3e-12  Score=111.73  Aligned_cols=72  Identities=25%  Similarity=0.235  Sum_probs=56.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            456677788888888888888888888888888888888888888888888888888888888888777654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.40  E-value=8.5e-13  Score=116.53  Aligned_cols=79  Identities=18%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCC--------------CCCcHHHHHHhcCCHHHHHHHHH---cCC
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGN--------------EDESIVHHTASVGDAEGLKNALA---AGA  253 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~--------------~g~TpLh~Aa~~G~~eivk~LL~---~GA  253 (280)
                      ..+.++..+     ..++.+++++|++.|++++.++.              .|+||||+||..|+.++|++|++   +|+
T Consensus       101 g~tpL~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A          101 GQTALHIAI-----ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCHHHHHH-----HcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            345555554     67889999999999999999997              79999999999999999999999   999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCC
Q 023608          254 DKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       254 dvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      +++.+|..|+||||+||.+|+
T Consensus       176 d~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          176 DISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCC
T ss_pred             CceeeCCCCCcHHHHHHHccC
Confidence            999999999999999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.40  E-value=3.5e-13  Score=116.31  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGN-EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~-~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ...+.+|..+     ..++.+++++|++.|++++.++. .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       116 ~g~t~L~~A~-----~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          116 NGHTCLHLAS-----IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL  190 (236)
T ss_dssp             TCCCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             CCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHH
Confidence            3445565555     66888999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+.+
T Consensus       191 A~~~~~~~  198 (236)
T 1ikn_D          191 TWGRPSTR  198 (236)
T ss_dssp             CTTSSCHH
T ss_pred             HHccCchH
Confidence            99988764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.39  E-value=4.7e-13  Score=119.75  Aligned_cols=86  Identities=20%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..+.++..+.......++.++++.|++.|++++..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+||
T Consensus       145 g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~  224 (276)
T 4hbd_A          145 GYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC  224 (276)
T ss_dssp             SCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence            34445444422222445668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+|+.+
T Consensus       225 ~~g~~~  230 (276)
T 4hbd_A          225 EHGHKE  230 (276)
T ss_dssp             HHTCHH
T ss_pred             HCCCHH
Confidence            998864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.39  E-value=1.4e-12  Score=113.71  Aligned_cols=99  Identities=20%  Similarity=0.151  Sum_probs=81.0

Q ss_pred             HHHHHHcCChhhhhh-hcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          173 ILDEIESGGPSAMMK-YWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       173 i~e~i~~~g~~al~~-~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      +++.+.+.+...... .....+.++..+     ..++.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++
T Consensus        20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (285)
T 1wdy_A           20 LVQQLLEGGANVNFQEEEGGWTPLHNAV-----QMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccccCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344444444443322 233345566555     66888999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |++++.+|..|+||||+|+.+|+.+
T Consensus        95 g~~~~~~~~~g~t~L~~A~~~~~~~  119 (285)
T 1wdy_A           95 GADVNECDFYGFTAFMEAAVYGKVK  119 (285)
T ss_dssp             TCCTTCBCTTCCBHHHHHHHTTCHH
T ss_pred             CCCCCccCcccCCHHHHHHHhCCHH
Confidence            9999999999999999999998864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.39  E-value=7.1e-13  Score=124.51  Aligned_cols=71  Identities=21%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..++.++|++|++.|+++|.+|..|+||||+|+.+|+.++|++|+++|++++.+|.+|+||||+|+..|+.
T Consensus       320 ~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          320 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             HcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcH
Confidence            45566677777777777777777777777777777777777777777777777777777777777776664

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.38  E-value=7.8e-13  Score=118.72  Aligned_cols=97  Identities=8%  Similarity=0.060  Sum_probs=77.4

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-..  +..+.+|.++     ..++.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|
T Consensus        46 ~v~~Ll~~g~~~~~~--~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  118 (285)
T 3kea_A           46 LVCTLLNAGALKNLL--ENEFPLHQAA-----TLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  118 (285)
T ss_dssp             HHHHHHHTTGGGSCC--TTCCHHHHHT-----TSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCCCC--CCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            344444444433222  2344555444     678889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-CcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEG-RTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G-~TPLH~Aa~~G~~e  276 (280)
                      ++++.+|..| +||||+|+.+|+.+
T Consensus       119 a~~~~~~~~g~~t~L~~A~~~~~~~  143 (285)
T 3kea_A          119 WRLMFYGKTGWKTSFYHAVMLNDVS  143 (285)
T ss_dssp             GGGGGCSSSGGGSHHHHHHHTTCHH
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHH
Confidence            9999999999 79999999988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.38  E-value=8.6e-13  Score=118.29  Aligned_cols=83  Identities=17%  Similarity=0.111  Sum_probs=56.8

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      +.+.+.++..+     ..|+.++++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+
T Consensus        57 ~~g~t~L~~Aa-----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           57 VSDWSPMHEAA-----IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             CCSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             ccCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            34445555444     5566677777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+.+|+++
T Consensus       132 A~~~~~~~  139 (285)
T 3d9h_A          132 ACVSGSWD  139 (285)
T ss_dssp             HHHHTCHH
T ss_pred             HHHcCHHH
Confidence            77766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.37  E-value=2.7e-12  Score=107.50  Aligned_cols=70  Identities=23%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             ccCCHHHHHHHH-hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCC
Q 023608          205 AVGGDATTSADN-AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       205 ~~g~~~~v~~Ll-~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G-Advn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ..++.+++++|+ ..+.+++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+.++.
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  152 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE  152 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSC
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhcc
Confidence            556777777777 667777888888888888888888888888888877 7788888888888888877665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.37  E-value=4.8e-13  Score=118.81  Aligned_cols=81  Identities=19%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.+|.++     ..|+.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus        71 ~~g~t~L~~A~-----~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  145 (299)
T 1s70_B           71 VDGLTALHQAC-----IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (299)
T ss_dssp             TTCCBHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence            34456666655     6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCC
Q 023608          269 ACGYGE  274 (280)
Q Consensus       269 Aa~~G~  274 (280)
                      |+..++
T Consensus       146 A~~~~~  151 (299)
T 1s70_B          146 AEEEAM  151 (299)
T ss_dssp             CCSHHH
T ss_pred             HHhcch
Confidence            986654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.37  E-value=1.4e-12  Score=122.46  Aligned_cols=103  Identities=14%  Similarity=0.069  Sum_probs=87.0

Q ss_pred             ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 023608          169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNA  248 (280)
Q Consensus       169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~L  248 (280)
                      +..++++.+.+.+...-.......+.++.++     ..++.+++++|++.|++++.+|..|+||||+|+.+|+.++|++|
T Consensus       256 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  330 (437)
T 1n11_A          256 GHAEMVALLLSKQANGNLGNKSGLTPLHLVA-----QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL  330 (437)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            3455666666666554444445556676665     56788999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          249 LAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       249 L~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +++|+++|.+|..|+||||+|+.+|+.+
T Consensus       331 l~~gad~n~~~~~g~t~L~~A~~~g~~~  358 (437)
T 1n11_A          331 LQHQADVNAKTKLGYSPLHQAAQQGHTD  358 (437)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhcCCCCCCCCCCCCCHHHHHHHCChHH
Confidence            9999999999999999999999999864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.37  E-value=2.7e-12  Score=111.83  Aligned_cols=68  Identities=16%  Similarity=0.127  Sum_probs=65.3

Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       209 ~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+++++|++.|++++.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+
T Consensus       199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~  267 (285)
T 1wdy_A          199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH
Confidence            689999999999999999999999999999999999999999 89999999999999999999998864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.36  E-value=1.5e-12  Score=114.00  Aligned_cols=81  Identities=6%  Similarity=-0.081  Sum_probs=58.7

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      ..+.+|.++     ..++.+++++|++.|++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|..|+|||++|.
T Consensus       192 g~tpL~~A~-----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          192 GRTPLHLAV-----EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             CCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             CcCHHHHHH-----HcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            445666555     668889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .....|
T Consensus       267 ~~~~~~  272 (282)
T 1oy3_D          267 SDSDSD  272 (282)
T ss_dssp             ------
T ss_pred             Cccccc
Confidence            765443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.36  E-value=1.4e-12  Score=117.09  Aligned_cols=81  Identities=20%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      ....+.+|.++     ..|+.++++.|++.|++++..|  |+||||+||..|+.++|++|+++|++++.+|..|+||||+
T Consensus        29 ~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           29 VHGHSASYYAI-----ADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTSCCHHHHHH-----HTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHH-----HcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            44445666655     6788999999999999999984  8999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      ||.+|+++
T Consensus       102 A~~~g~~~  109 (285)
T 3kea_A          102 AVDSGNMQ  109 (285)
T ss_dssp             HHHTTCHH
T ss_pred             HHHcCCHH
Confidence            99999865

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.35  E-value=2.1e-12  Score=120.25  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=73.0

Q ss_pred             chhHHHHhHHhhhhccCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTSADNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ..+.+|.++     ..++.++|++|++.+ ++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus       279 g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          279 GRTALHYAA-----QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             CCCTHHHHH-----SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             CCCHHHHHH-----HhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            344555555     778899999999765 99999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCC
Q 023608          270 CGYGEVC  276 (280)
Q Consensus       270 a~~G~~e  276 (280)
                      +.+||.+
T Consensus       354 ~~~g~~~  360 (373)
T 2fo1_E          354 QANNHHN  360 (373)
T ss_dssp             HHTTCHH
T ss_pred             HHcCCHH
Confidence            9999865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.35  E-value=1.5e-12  Score=112.39  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCC------ccccCCCCCcHHHHHHhcCCHHHHHH
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADE------AEEVGNEDESIVHHTASVGDAEGLKN  247 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gad------vn~~D~~g~TpLh~Aa~~G~~eivk~  247 (280)
                      ++.+.+.|...-.........++.++     ..++.+++++|++.+++      ++..|..|.||||+||..|+.++|++
T Consensus        61 v~~Ll~~g~~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  135 (236)
T 1ikn_D           61 AEALLGAGCDPELRDFRGNTPLHLAC-----EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  135 (236)
T ss_dssp             HHCCCSCCCCSCCCCTTCCCHHHHHH-----HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence            33333444333333344455566555     66788999999999876      67889999999999999999999999


Q ss_pred             HHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608          248 ALAAGADKDEEDS-EGRTALHFACGYGEVC  276 (280)
Q Consensus       248 LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e  276 (280)
                      |+++|++++.+|. .|+||||+|+.+|+.+
T Consensus       136 Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D          136 LVSLGADVNAQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999998 9999999999998864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.34  E-value=1.2e-12  Score=119.88  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCCCccc-cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          210 ATTSADNAGADEAEE-VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~-~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      +++++|++.|+++|. +|..|+||||+||.+|+.++|++||++|++++.+|..|+||||+||.+|+
T Consensus       111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence            567777888888888 78888888888888888888888888888888888888888888888776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.34  E-value=4.6e-12  Score=113.93  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA  269 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A  269 (280)
                      ..++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus       256 ~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            44555566666666666666666666666666666666666666666666666666666666654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.34  E-value=2.9e-12  Score=116.47  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=58.1

Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          209 DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       209 ~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++++|++.|+++|.+|..|+||||+||..|+.++|++|+.. |++++.+|.+|+||||+||.+|+.+
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~  287 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  287 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH
Confidence            3577888888998988888889999999999999999888874 7888888888999999998888764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.34  E-value=1.4e-12  Score=119.85  Aligned_cols=81  Identities=14%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             chhHHHHhHHhhhhccC--CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCC
Q 023608          191 DKDVLQKLGEAMGLAVG--GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD-----KDEEDSEGR  263 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g--~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd-----vn~~D~~G~  263 (280)
                      ..+.++.++     ..|  +.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++|++     ++.+|..|+
T Consensus       138 g~t~L~~A~-----~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          138 GQTALHWCV-----GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             CCCHHHHHH-----HSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCHHHHHH-----HcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            345555554     667  78999999999999999999999999999999999999999999999     999999999


Q ss_pred             cHHHHHHHcCCCC
Q 023608          264 TALHFACGYGEVC  276 (280)
Q Consensus       264 TPLH~Aa~~G~~e  276 (280)
                      ||||+||.+|+++
T Consensus       213 t~L~~A~~~g~~~  225 (364)
T 3ljn_A          213 SHLHWAILINWED  225 (364)
T ss_dssp             CTTHHHHTTTCHH
T ss_pred             cHHHHHHHcCCHH
Confidence            9999999999865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.32  E-value=2.8e-12  Score=120.97  Aligned_cols=72  Identities=19%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             cc-CCHHHHHHHHhCCCCccccC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AV-GGDATTSADNAGADEAEEVG--NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~-g~~~~v~~Ll~~gadvn~~D--~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .. ++.++++.|++.|+++|..+  ..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+.+|+++
T Consensus       208 ~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  282 (368)
T 3jue_A          208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTG  282 (368)
T ss_dssp             SSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHH
Confidence            56 88899999999999999998  89999999999999999999999999999999999999999999999865

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.29  E-value=3.9e-12  Score=123.36  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             ccCCHHHHHHHHhCCCCcccc------CCCCCcHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEV------GNEDESIVHHTAS---VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~------D~~g~TpLh~Aa~---~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..|+.+.++.|++.|+++|..      |..|+||||+||.   .|+.++|++||++|+++|.+|..|+||||+||.+||+
T Consensus       141 ~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~  220 (497)
T 3lvq_E          141 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP  220 (497)
T ss_dssp             HHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCH
T ss_pred             hccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCH
Confidence            678899999999999999988      8999999999976   9999999999999999999999999999999999986


Q ss_pred             C
Q 023608          276 C  276 (280)
Q Consensus       276 e  276 (280)
                      +
T Consensus       221 ~  221 (497)
T 3lvq_E          221 D  221 (497)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=111.07  Aligned_cols=71  Identities=20%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..+++++|++.|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  204 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA  204 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred             HcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            4466677777777777776543 3777777777777777777777777777777777777777777777654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.28  E-value=1.7e-12  Score=118.88  Aligned_cols=97  Identities=15%  Similarity=-0.019  Sum_probs=78.2

Q ss_pred             HHHHcCChhhhh-hhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC---HHHHHHHHH
Q 023608          175 DEIESGGPSAMM-KYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD---AEGLKNALA  250 (280)
Q Consensus       175 e~i~~~g~~al~-~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~---~eivk~LL~  250 (280)
                      +.+...+...-. ......+.+|.++     ..|+.++|++|++.|++++.+|..|+||||+||.+|+   .++++.|++
T Consensus       114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa-----~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~  188 (327)
T 1sw6_A          114 DAFPNTQLNLNIPVDEHGNTPLHWLT-----SIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD  188 (327)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCHHHHHH-----HTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred             HHHHhcCCCcccccCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence            333444444333 3345556676666     6788999999999999999999999999999999998   788888888


Q ss_pred             cC-CCCCCCCCCCCcHHHHHHH----cCCCC
Q 023608          251 AG-ADKDEEDSEGRTALHFACG----YGEVC  276 (280)
Q Consensus       251 ~G-Advn~~D~~G~TPLH~Aa~----~G~~e  276 (280)
                      .+ ++++.+|..|+||||+||.    +|+.+
T Consensus       189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~  219 (327)
T 1sw6_A          189 YLYPCLILEDSMNRTILHHIIITSGMTGCSA  219 (327)
T ss_dssp             HHGGGGGEECTTCCCHHHHHHHHHTSTTCHH
T ss_pred             hhhccccCCCCCCCCHHHHHHHHccccccHH
Confidence            87 7899999999999999998    66643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.28  E-value=1.6e-11  Score=111.59  Aligned_cols=94  Identities=10%  Similarity=-0.083  Sum_probs=73.5

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNA-GADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~-~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      +++.+.+.|...-.+.....+.+|..+     ..+..+.++.|+. .|+++|.+|.+|+||||+||.+|+.++|++||++
T Consensus       221 i~~lLl~~gad~n~~d~~g~t~L~~a~-----~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          221 ITHLLLDHGADVNVRGERGKTPLILAV-----EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHHHHHHTTCCTTCCCGGGCCHHHHHH-----HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHH-----HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            344444444443333333445565555     6788899999987 5899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          252 GADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |+++|.+     ||||+|+..|+.+
T Consensus       296 GAd~n~~-----~~L~~A~~~~~~~  315 (337)
T 4g8k_A          296 GASTDCG-----DLVMTARRNYDHS  315 (337)
T ss_dssp             SCSSTTC-----CHHHHHHHTTCHH
T ss_pred             CCCCCCC-----CHHHHHHHcCCHH
Confidence            9999864     6999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.26  E-value=2.5e-11  Score=103.26  Aligned_cols=71  Identities=21%  Similarity=0.173  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..++.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh
Confidence            56788999999999999999999999999999999999999999999999999999999999999977763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.25  E-value=1.6e-11  Score=110.72  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             hccCCHHHHHHHHhCCCCc------cccCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          204 LAVGGDATTSADNAGADEA------EEVGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       204 ~~~g~~~~v~~Ll~~gadv------n~~D~~g~TpLh~Aa~~---G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      +..++.+.+..+++.|.++      +..|..|+||||+||..   |+.++|++|+++|+++|.+|..|+||||+|+.+|+
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            3667888899999999994      45589999999999999   99999999999999999999999999999999998


Q ss_pred             CC
Q 023608          275 VC  276 (280)
Q Consensus       275 ~e  276 (280)
                      .+
T Consensus       218 ~~  219 (278)
T 1dcq_A          218 AE  219 (278)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.24  E-value=3.7e-11  Score=102.15  Aligned_cols=72  Identities=15%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD-AEGLKNALAAGADKDEEDS-EGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~-~eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..|.||||+|+..++ .+++++|++.|++++..+. .|+||||+|+.+|+++
T Consensus       118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  191 (240)
T 3eu9_A          118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT  191 (240)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence            6678899999999999999999999999999997776 8999999999999999987 8999999999998865

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.24  E-value=6.1e-12  Score=117.04  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=44.5

Q ss_pred             HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       215 Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      |++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+++
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~  213 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG  213 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHH
Confidence            34677777777777777777777777777777777777777777777777777777766643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=112.46  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=67.7

Q ss_pred             ccCCHHHHHHHHhCCCCccc------cCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEE------VGNEDESIVHHTASV---GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~------~D~~g~TpLh~Aa~~---G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..++.+.++.|++.|++++.      .|..|+||||+||..   |++++|++||++|+++|.+|..|+||||+|+.+|+.
T Consensus       160 ~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~  239 (301)
T 2b0o_E          160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQP  239 (301)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            67888899999999999998      699999999999997   899999999999999999999999999999999986


Q ss_pred             C
Q 023608          276 C  276 (280)
Q Consensus       276 e  276 (280)
                      +
T Consensus       240 ~  240 (301)
T 2b0o_E          240 D  240 (301)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.17  E-value=2.4e-11  Score=93.54  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608          174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA  253 (280)
Q Consensus       174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA  253 (280)
                      ++.+.+.+...-.........+|.++     ..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus        25 ~~~Ll~~g~~~~~~d~~g~t~L~~A~-----~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga   99 (115)
T 2l6b_A           25 VKKLLSKGADVNARSKDGNTPLHLAA-----KNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA   99 (115)
T ss_dssp             HHHHTTTTCCSSCCCSSSCCTTHHHH-----TTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSS
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHH-----HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            34444444433333334445555555     6788899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHH
Q 023608          254 DKDEEDSEGRTAL  266 (280)
Q Consensus       254 dvn~~D~~G~TPL  266 (280)
                      ++|.++..|+||-
T Consensus       100 ~~n~~~~~~~~~~  112 (115)
T 2l6b_A          100 DVNARSWGSSHHH  112 (115)
T ss_dssp             SHHHHSCCCC---
T ss_pred             CCCcCCccccccc
Confidence            9999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.05  E-value=8.5e-10  Score=81.98  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+...-.......+.+|..+     ..++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        16 ~~v~~Ll~~g~~~n~~d~~g~t~L~~A~-----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           16 EVVKLLLEAGADVNAKDKNGRTPLHLAA-----RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3444455555444333344556666655     66888999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 023608          252 GAD  254 (280)
Q Consensus       252 GAd  254 (280)
                      |++
T Consensus        91 ga~   93 (93)
T 1n0q_A           91 GAY   93 (93)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.02  E-value=1.5e-10  Score=89.19  Aligned_cols=55  Identities=25%  Similarity=0.425  Sum_probs=48.1

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       222 vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      +...|.+|.|+||+||..|+.+++++|+++|++++.+|..|+||||+||.+|+++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~   71 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE   71 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence            4556788999999999999999999999999999999999999999999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.99  E-value=4e-11  Score=113.27  Aligned_cols=75  Identities=15%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             hhhhccCCHHHHHHHHhCCCC---ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HcCC
Q 023608          201 AMGLAVGGDATTSADNAGADE---AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE--EDSEGRTALHFAC-GYGE  274 (280)
Q Consensus       201 ~~g~~~g~~~~v~~Ll~~gad---vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~--~D~~G~TPLH~Aa-~~G~  274 (280)
                      .+.+..|+.++|++|++.|++   ++..+.+ .||||+||..|+.++|++|+++|++++.  +|..|+||||+|| .+||
T Consensus       133 ~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~  211 (376)
T 2aja_A          133 RLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH  211 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence            333478999999999999976   2333333 9999999999999999999999999887  8899999999999 9998


Q ss_pred             CC
Q 023608          275 VC  276 (280)
Q Consensus       275 ~e  276 (280)
                      ++
T Consensus       212 ~e  213 (376)
T 2aja_A          212 HN  213 (376)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.77  E-value=1.1e-09  Score=103.33  Aligned_cols=78  Identities=10%  Similarity=0.022  Sum_probs=59.7

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHHhCCCCc---cccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCcHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADNAGADEA---EEVGNEDESIVHHTASVGDAEGLKNALAAGAD---KDEEDSEGRTAL  266 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadv---n~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd---vn~~D~~G~TPL  266 (280)
                      +.++..+     ..|+.++|++|++.|+..   +..+..+.||||+||.+|+.++|++|+++|++   ++..+.+ +|||
T Consensus        94 T~Lh~Aa-----~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           94 VICFVAA-----ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             HHHHHHH-----HHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CHHHHHH-----HcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            4455554     778999999999999832   34455678999999999999999999999986   2333333 9999


Q ss_pred             HHHHHcCCCC
Q 023608          267 HFACGYGEVC  276 (280)
Q Consensus       267 H~Aa~~G~~e  276 (280)
                      |+||.+||++
T Consensus       168 h~Aa~~G~~e  177 (376)
T 2aja_A          168 RLAAENGHLH  177 (376)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHCCCHH
Confidence            9999999975

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=98.03  E-value=2.8e-06  Score=61.96  Aligned_cols=54  Identities=24%  Similarity=0.422  Sum_probs=38.4

Q ss_pred             HHHHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHHh
Q 023608           58 FSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGN  133 (280)
Q Consensus        58 ~~~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~~  133 (280)
                      .+.+..+|+||.|..    +|+||.|+++.+++.+--                  ..|+++|+||.++.++++|+.
T Consensus        10 ee~~~~~m~dPEi~~----im~DP~~~~~lq~~~~NP------------------~~~~k~~~nP~v~~~i~kl~~   63 (71)
T 2llw_A           10 EETYQRAMKDPEVAA----IMQDPVMQSILQQAQQNP------------------AALQEHMKNPEVFKKIQTLIA   63 (71)
T ss_dssp             HHHHHHHHHSHHHHH----HHTCTHHHHHHHHHHHCH------------------HHHHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHH----HhCCHHHHHHHHHHHHCH------------------HHHHHHHhCHHHHHHHHHHHH
Confidence            444556777775544    667777777777766521                  568889999999999999864

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=97.92  E-value=9.3e-06  Score=57.53  Aligned_cols=52  Identities=8%  Similarity=0.261  Sum_probs=32.6

Q ss_pred             HHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHHhh
Q 023608           61 MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNA  134 (280)
Q Consensus        61 ~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~~~  134 (280)
                      ++.|++||.+..    +++||.|+++.+++++.-                  ..+++.|+||.++++.+.|...
T Consensus         5 ~~kl~~dPe~~~----~m~dP~~~~~lq~i~~NP------------------~~~~~~~~dP~v~~~~~~L~~~   56 (62)
T 2lnm_A            5 ISKIMENPDVAM----AFQNPRVQAALMECSENP------------------MNIMKYQNDKEVMDVFNKISQL   56 (62)
T ss_dssp             HHHHTTSHHHHH----HTTSHHHHHHHHHHTTCG------------------GGHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcChHHHH----HcCCHHHHHHHHHHHHCH------------------HHHHHHHhChHHHHHHHHHHHH
Confidence            445666664433    556666655555554411                  3577789999999988887643

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=97.25  E-value=0.0002  Score=50.58  Aligned_cols=46  Identities=17%  Similarity=0.171  Sum_probs=38.0

Q ss_pred             CCCCCCChhcHHHHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 023608           48 VGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHG   96 (280)
Q Consensus        48 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~   96 (280)
                      +..++.||.++++++.+.+||+   .+++.++||.++++.+.|-+-++|
T Consensus        14 ~~~~m~dP~~~~~lq~i~~NP~---~~~~~~~dP~v~~~~~~L~~~~~g   59 (62)
T 2lnm_A           14 VAMAFQNPRVQAALMECSENPM---NIMKYQNDKEVMDVFNKISQLFPG   59 (62)
T ss_dssp             HHHHTTSHHHHHHHHHHTTCGG---GHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHcCCHHHHHHHHHHHHCHH---HHHHHHhChHHHHHHHHHHHHhCC
Confidence            3456889999999999999995   445799999999999999877654

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=97.24  E-value=4.1e-05  Score=55.74  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             CCCCCCCCChhcHHHHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHh
Q 023608           46 PGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKT   93 (280)
Q Consensus        46 ~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~   93 (280)
                      |.+..++.||.+++++++|++||   ..++..|+||.|+++.++|...
T Consensus        20 PEi~~im~DP~~~~~lq~~~~NP---~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           20 PEVAAIMQDPVMQSILQQAQQNP---AALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHHHTCTHHHHHHHHHHHCH---HHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHCH---HHHHHHHhCHHHHHHHHHHHHc
Confidence            34456788999999999999999   5566899999999999999763

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0007  Score=49.04  Aligned_cols=51  Identities=22%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             HHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHH-hccChHHHHHHHHHH
Q 023608           60 AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQ-VMQNPQFMTMAERLG  132 (280)
Q Consensus        60 ~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~-~m~np~~~~ma~~~~  132 (280)
                      ..+.|++||.++.    +++||.|+++-+++++.-                  ..+++ .++||.+++....|+
T Consensus        15 ~~~kl~~dP~t~~----~~~DP~~~~~lq~i~~NP------------------~~i~~~~~~dPrv~~~l~~L~   66 (71)
T 2llv_A           15 LIENLKKNPKTSE----MMKDPQLVAKLIGYKQNP------------------QAIGQDLFTDPRLMTIMATLM   66 (71)
T ss_dssp             CHHHHHHSSTTHH----HHHSCTHHHHHHHHHHSC------------------TTHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHH----HhcCHHHHHHHHHHHHCH------------------HHHHHHHhhCcHHHHHHHHHH
Confidence            3346777886665    667887777777776632                  34667 888999888777664

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=92.99  E-value=0.03  Score=40.26  Aligned_cols=17  Identities=41%  Similarity=0.768  Sum_probs=11.1

Q ss_pred             hhCChHHHHHHHHHhcCChH
Q 023608           64 LLNDPSIKELAEQIAKDPAF   83 (280)
Q Consensus        64 ~~~~p~~~~~~~~~~~~p~~   83 (280)
                      +.++|   ++.+.|++||..
T Consensus         9 ~f~~p---~~~~kl~~dP~t   25 (71)
T 2llv_A            9 LFADP---NLIENLKKNPKT   25 (71)
T ss_dssp             HHHSS---SCHHHHHHSSTT
T ss_pred             hccCh---HHHHHHHcChHH
Confidence            55577   555568888844

>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1

Probab=84.26  E-value=0.89  Score=32.76  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             HhhCChHHHHHHHHHhcCChH-HHHHHHHHH
Q 023608           63 GLLNDPSIKELAEQIAKDPAF-NSMAEQLQK   92 (280)
Q Consensus        63 ~~~~~p~~~~~~~~~~~~p~~-~~ma~~~~~   92 (280)
                      -|.++|.|.+|-+-+.+||++ ..+-++|+.
T Consensus         8 ~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~   38 (72)
T 1pve_A            8 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGR   38 (72)
T ss_dssp             GGTTCTTTTTHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHcChHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence            477788877777778888843 335555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 232 IVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC 276
           +V + A  G  E LK ++ A  +     D + RTALH+AC  G   
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTE 51

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC-GYGEVC 276
            E  + +H        E  K  ++ GA    E+ E +T L  A  G G + 
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276
             V     + +H+ AS    E     L  GA+ D +D    TA+H A   G + 
Sbjct: 97  NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 150

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           H  + +G    +KN L  GA  +  + +  T LH A   G
Sbjct: 5   HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 44

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
             GA        + E+ +H  A  G  E  K  L   A  + +  + +T LH A   G
Sbjct: 21  QRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG 77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 223 EEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
                   S +H  A  G  + +   L  GA  +E  S+G T L  A   G
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 374

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 225 VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276
           V  +D ++     S GD E +   L  GAD +  + +G TALH AC    V 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVD 87

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
            +  + +H  A  G  E  +  +    D +  +  G+TA   A 
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
            + ++ +   A  G  E +   +  GA  +  D+   TA   A    
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 265

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 234 HHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC 276
           H      +   ++  L +  +   ++D +GR  LH++  +    
Sbjct: 5   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYG 273
           ED  ++       D + ++  L  GA+ + ++ E G T LH A    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS 50

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL-AAGADKDEEDSEGRTALHFACGYG 273
           + GAD     G   ++ +           ++  L     + ++ DS+G+TAL  A    
Sbjct: 207 DHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESI 232
            L  +      A+  +      ++++ + + L                +A + G + E I
Sbjct: 36  ELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY--YAHYNRNAKQLWSDAHKKGIKSEVI 93

Query: 233 VHHTASVGDAEGLKNA---LAAGADKDEEDSEGRTALHFACGYG 273
               A  G +  L      L +        +E   A   A   G
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 137

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           +H  +  G    ++  + +GAD   ++    T L  A    
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 228 ED-ESIVHHTASVGDAEG----LKNALAAGADKDEEDSEGRTALHFACGYGEVC 276
           ED ++ +H     G+       +      G + D  ++  +T LH A       
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 225 VGNEDESIVHHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEVC 276
           V  + ++ +H          L   L   A     D ++  G+TALH A   GE  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
            + +H       A  L+  L AGAD       GRT L  A    
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 242 AEGLKNALAAGADKDE-EDSEGRTALHFACGYG 273
           A+ + + LA GA+ +   D  G T+LH A  + 
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFA 34

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 5/25 (20%), Positives = 8/25 (32%)

Query: 249 LAAGADKDEEDSEGRTALHFACGYG 273
           L   A+++  D   R     A    
Sbjct: 176 LDNFANREITDHMDRLPRDVASERL 200

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 234 HHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271
           +  A +G+   +   L  GAD    +  G   + F  G
Sbjct: 264 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 301

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 10/56 (17%), Positives = 20/56 (35%)

Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
           GAD   +      + +H    + + + +   L  GAD +    +G +      G  
Sbjct: 134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.61
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.6
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.58
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.55
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.53
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.49
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.47
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.41
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.39
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.38
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.37
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.36
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.36
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.35
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.33
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.32
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.3
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.29
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.28
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.25
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.24
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.21
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.21
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.19
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.17
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.14
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.08
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.08
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.08
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.07
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.03
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.02

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=125.53  Aligned_cols=72  Identities=22%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+.++|+.|++.|+|+|.+|.+|+||||+||..|+.+++++|+++|++++.+|.+|+||||+||.+|+++
T Consensus        10 ~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1          10 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            556777888888888888888888888888888888888888888888888888888888888888877754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.4e-15  Score=124.73  Aligned_cols=83  Identities=14%  Similarity=0.065  Sum_probs=72.3

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      .+.+|.++.. + ..+..+++++|++.|+++|.+|.+|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus        46 ~t~Lh~A~~~-~-~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  123 (154)
T d1dcqa1          46 ETALHLAVRS-V-DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR  123 (154)
T ss_dssp             CBHHHHHHHH-C-CTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CchHHHHHHh-c-CCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHH
Confidence            3455544421 1 3456789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 023608          272 YGEVC  276 (280)
Q Consensus       272 ~G~~e  276 (280)
                      +|+.+
T Consensus       124 ~~~~~  128 (154)
T d1dcqa1         124 LKHEH  128 (154)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            99864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=5.3e-16  Score=120.97  Aligned_cols=92  Identities=15%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.|.+.-.......+.+|..+     ..+..+++++|++.|+++|.+|..|+||||+|+.+|+.++|++|+++|
T Consensus        17 ~v~~Ll~~g~d~n~~~~~g~t~lh~A~-----~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G   91 (118)
T d1myoa_          17 EVKDYVAKGEDVNRTLEGGRKPLHYAA-----DCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG   91 (118)
T ss_dssp             HHHHHHTTTCCCCCCSSSSCCTTHHHH-----HHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTC
T ss_pred             HHHHHHHhhhccccccccccccccccc-----cccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhccc
Confidence            344444444433333333334444433     345555666666666666666666666666666666666666666666


Q ss_pred             CCCCCCCCCCCcHHHHH
Q 023608          253 ADKDEEDSEGRTALHFA  269 (280)
Q Consensus       253 Advn~~D~~G~TPLH~A  269 (280)
                      ++++.+|.+|+||||+|
T Consensus        92 ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          92 ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCSSSSSSSTCCCCCTC
T ss_pred             ccceeeCCCCCCHHHHH
Confidence            66666666666666655

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-15  Score=118.51  Aligned_cols=72  Identities=22%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCC-cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~-TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..++.+++++|++.|++++.+|..+. ||||+||.+|+.++|++|+++|++++.+|..|+||||+|+.+||.|
T Consensus        44 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~  116 (125)
T d1bi7b_          44 MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD  116 (125)
T ss_dssp             CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHH
Confidence            35788999999999999999998876 6999999999999999999999999999999999999999999865

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.3e-15  Score=118.67  Aligned_cols=74  Identities=24%  Similarity=0.192  Sum_probs=70.7

Q ss_pred             hhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          203 GLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       203 g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+..|+.++|+.|++.|++++.+|..|+||||+||.+|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus         9 A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             HHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=1.8e-14  Score=119.60  Aligned_cols=80  Identities=19%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      .+.++...     ..+...+++.+++.+.+++..|..|.||||+||..|+.++|++||++|++++.+|..|+||||+|+.
T Consensus       124 ~t~l~~~~-----~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~  198 (209)
T d1ot8a_         124 KTALHWAA-----AVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE  198 (209)
T ss_dssp             CBHHHHHH-----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcchhhc-----ccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            34455544     5678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 023608          272 YGEVC  276 (280)
Q Consensus       272 ~G~~e  276 (280)
                      +||++
T Consensus       199 ~~~~~  203 (209)
T d1ot8a_         199 RLHHD  203 (209)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            99975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=130.03  Aligned_cols=72  Identities=21%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+....++.+++.|+++|.+|.+|+||||+||.+|+.++|++||++||++|.+|.+|+||||+|+..||++
T Consensus       306 ~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            556778999999999999999999999999999999999999999999999999999999999999999865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.3e-14  Score=111.20  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .....+.++.++..+.+++.+|..|+||||+||..|+.++|++|+++|++++.+|.+|+||||+|+.+|+.|
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH
Confidence            445668899999999999999999999999999999999999999999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-13  Score=111.25  Aligned_cols=71  Identities=17%  Similarity=0.094  Sum_probs=66.9

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..++++.+++.|+++|.+|..|+||||+||..|+.+++++|+ .|++++.+|.+|+||||+|+.+|+.+
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             ccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH
Confidence            667788999999999999999999999999999999999999888 68999999999999999999999865

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5e-14  Score=127.42  Aligned_cols=72  Identities=19%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+.++|+.|++.|+++|.+|..|+||||+||.+|+.++|++||++|++++.+|.+|+||||+|+.+|+.+
T Consensus         9 ~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           9 FMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             HCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            678999999999999999999999999999999999999999999999999999999999999999998764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=108.86  Aligned_cols=100  Identities=12%  Similarity=-0.012  Sum_probs=79.6

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.|.+.-.+.....+.+|..+     ..++.+++++|++.|++++.+|.+|+||||+||.+|+.++|++|+++
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~-----~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   89 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPNDEGITALHNAV-----CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES   89 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCHHHHHH-----HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccccccccccccccc-----ccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHc
Confidence            3445555555554444444556666665     56788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCcHHHHH--HHcCCCC
Q 023608          252 GADKDEEDS-EGRTALHFA--CGYGEVC  276 (280)
Q Consensus       252 GAdvn~~D~-~G~TPLH~A--a~~G~~e  276 (280)
                      |++++.++. .++||++++  +..||.|
T Consensus        90 ga~v~~~~~~~~~~~~~~~~a~~~g~~e  117 (130)
T d1ycsb1          90 GAAVFAMTYSDMQTAADKCEEMEEGYTQ  117 (130)
T ss_dssp             TCCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             CCCcccccCCCCCCHHHHHHHHHcChHH
Confidence            999998775 589988765  4567765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.41  E-value=9.3e-14  Score=119.35  Aligned_cols=80  Identities=15%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             chhHHHHhHHhhhhccCCHHHHH--------HHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 023608          191 DKDVLQKLGEAMGLAVGGDATTS--------ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEG  262 (280)
Q Consensus       191 d~~~l~~~~~~~g~~~g~~~~v~--------~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G  262 (280)
                      +.+.+|.++     ..|+.++|+        .+++.|+|||.+|.+|+||||+||.+|+.++|++|+++|++++.+|.+|
T Consensus        33 g~T~Lh~A~-----~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g  107 (277)
T d2fo1e1          33 NRTVLHWIA-----SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE  107 (277)
T ss_dssp             CCCHHHHHH-----CTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             CccHHHHHH-----HcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccc
Confidence            446666655     455555544        4578999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCC
Q 023608          263 RTALHFACGYGEV  275 (280)
Q Consensus       263 ~TPLH~Aa~~G~~  275 (280)
                      +||||+|+..++.
T Consensus       108 ~t~l~~a~~~~~~  120 (277)
T d2fo1e1         108 RSALHQAAANRDF  120 (277)
T ss_dssp             CCHHHHHHHTTCH
T ss_pred             cccccchhhhcch
Confidence            9999999998874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.39  E-value=1.8e-13  Score=118.98  Aligned_cols=67  Identities=16%  Similarity=0.092  Sum_probs=64.1

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG  271 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~  271 (280)
                      ..++.++++.|++.|+++|.+|.+|+||||+||.+|+.++|++||++|++++.+|..|+||||+|+.
T Consensus       208 ~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999964

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2e-13  Score=116.42  Aligned_cols=80  Identities=20%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCC---ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADE---AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gad---vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      .+.+|.++     ..++.+++++|++.|++   ++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+
T Consensus        10 ~t~Lh~A~-----~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_          10 DTALHLAV-----IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CCHHHHHH-----HTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CCHHHHHH-----HcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            45666666     67888999999999988   77889999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCC
Q 023608          269 ACGYGEVC  276 (280)
Q Consensus       269 Aa~~G~~e  276 (280)
                      |+..++.+
T Consensus        85 A~~~~~~~   92 (255)
T d1oy3d_          85 ACRVRAHT   92 (255)
T ss_dssp             HTTTTCHH
T ss_pred             hhccCchH
Confidence            99888654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.2e-13  Score=111.73  Aligned_cols=96  Identities=19%  Similarity=0.118  Sum_probs=75.7

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.|.+.-.........++...     ..+....++.|++.+.+++.+|.+|+||||+|+..|+.++|++|+++|
T Consensus       118 ~~~~Ll~~g~d~~~~~~~~~t~L~~a~-----~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         118 IAVMLLEGGANPDAKDHYEATAMHRAA-----AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHH-----HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCcCCCCCccchhhh-----hcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            344444444443333344445555544     567778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~  274 (280)
                      ++++.+|.+|+||||+|. .||
T Consensus       193 ad~~~~d~~g~tpl~~A~-~~~  213 (223)
T d1uoha_         193 ASIYIENKEEKTPLQVAK-GGL  213 (223)
T ss_dssp             CCSCCCCTTSCCHHHHCC-TTH
T ss_pred             CCCCCCCCCCCCHHHHHH-CCC
Confidence            999999999999999984 344

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-13  Score=107.27  Aligned_cols=78  Identities=18%  Similarity=0.104  Sum_probs=69.4

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGR-TALHFACG  271 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~-TPLH~Aa~  271 (280)
                      +.+|..+     ..|+.++|+.|++.|+++|.+|.+|.||||+|+ .|+.++|++|+++|++++.+|..++ ||||+||.
T Consensus         5 ~~L~~Aa-----~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           5 DWLATAA-----ARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             THHHHHH-----HHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             hHHHHHH-----HCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            4455555     678999999999999999999999999999775 7999999999999999999999876 69999999


Q ss_pred             cCCCC
Q 023608          272 YGEVC  276 (280)
Q Consensus       272 ~G~~e  276 (280)
                      +|+++
T Consensus        79 ~g~~~   83 (125)
T d1bi7b_          79 EGFLD   83 (125)
T ss_dssp             HTCHH
T ss_pred             ccccc
Confidence            99865

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.7e-13  Score=113.30  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          208 GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ...+++.|++.|++++.+|..|.||||+||..|+.++|++||+ .|++++.+|.+|+||||+|+.+||.|
T Consensus       198 ~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            4468999999999999999999999999999999999999998 58999999999999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6.6e-13  Score=113.17  Aligned_cols=80  Identities=18%  Similarity=0.045  Sum_probs=70.8

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      .+.+|.++     ..++.++++.|++.+++++.. +..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       159 ~TpLh~A~-----~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         159 HTPLHVAV-----IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             CCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccccc-----cccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34555544     668889999999999998864 678999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+++.+
T Consensus       234 ~~~~~~  239 (255)
T d1oy3d_         234 LRPNPI  239 (255)
T ss_dssp             TSSCHH
T ss_pred             HCCCHH
Confidence            998864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-13  Score=112.49  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=67.7

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+...+++.+++.|.+++.+|..|.||||+||.+|+.++|++|+++|+|++.+|.+|+||||+|+.+||+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             HhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            556778899999999999999999999999999999999999999999999999999999999999888765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.33  E-value=1.6e-12  Score=111.38  Aligned_cols=72  Identities=14%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             ccCCHHHHHH-HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSA-DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~-Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..+.++. +...+.+++.+|..|+||||+||..|+.++|++|+++|++++.+|.+|+||||+|+.+|+.|
T Consensus       196 ~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             SSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            5666677665 56789999999999999999999999999999999999999999999999999999999865

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.1e-12  Score=108.41  Aligned_cols=99  Identities=19%  Similarity=0.231  Sum_probs=80.3

Q ss_pred             HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608          173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG  252 (280)
Q Consensus       173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G  252 (280)
                      +++.+.+.+...-.....+.+.++.++     ..+..+++++|++.|++++.+|..|.||||+|+..++.+++++|+..+
T Consensus        85 i~~~Ll~~~~d~~~~d~~g~tpL~~A~-----~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~  159 (223)
T d1uoha_          85 IVKALLGKGAQVNAVNQNGCTPLHYAA-----SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK  159 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhHHHhccCceeEeeCCCCCchhhHHH-----HcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccc
Confidence            344444444433333344445566555     567889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          253 ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       253 Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .+++.+|.+|+||||+|+.+|+++
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             ceeeeccCCCCceeccccccCcHH
Confidence            999999999999999999998865

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=1.3e-12  Score=109.53  Aligned_cols=79  Identities=15%  Similarity=0.075  Sum_probs=68.0

Q ss_pred             hcCchhHHHHhHHhhhhccCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcH
Q 023608          188 YWNDKDVLQKLGEAMGLAVGGDATTSADNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTA  265 (280)
Q Consensus       188 ~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TP  265 (280)
                      .......++..+     ..++.++++.|++.+ .+++.+|.+|+||||+||.+|+.++|++||+ .|++++.+|.+|+||
T Consensus       135 ~~~g~t~l~~a~-----~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~  209 (229)
T d1ixva_         135 DKFNQIPLHRAA-----SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA  209 (229)
T ss_dssp             CTTSCCHHHHHH-----HHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCT
T ss_pred             CCCCCCccchhh-----hcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            344556666665     567889999999876 6889999999999999999999999999997 599999999999999


Q ss_pred             HHHHHH
Q 023608          266 LHFACG  271 (280)
Q Consensus       266 LH~Aa~  271 (280)
                      ||+|+.
T Consensus       210 l~~A~~  215 (229)
T d1ixva_         210 EDVALN  215 (229)
T ss_dssp             GGGCSC
T ss_pred             HHHHhh
Confidence            999863

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.7e-12  Score=103.92  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             ccCCHHHHHHHHhCCCCcccc------CCCCCcHHHHHHh---cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEV------GNEDESIVHHTAS---VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~------D~~g~TpLh~Aa~---~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..++...+..++..|.|++..      +..|+||||+|+.   .++.++|++|+++|+++|.+|.+|+||||+||..|++
T Consensus        15 ~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~   94 (154)
T d1dcqa1          15 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA   94 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccc
Confidence            445666677778888887655      7889999999997   4789999999999999999999999999999999986


Q ss_pred             C
Q 023608          276 C  276 (280)
Q Consensus       276 e  276 (280)
                      +
T Consensus        95 ~   95 (154)
T d1dcqa1          95 E   95 (154)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.2e-12  Score=102.43  Aligned_cols=70  Identities=19%  Similarity=0.175  Sum_probs=52.5

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ..|+.++|+.|+++|+|+|.+|.+|+||||+|+ .|+.+++++|+++|++++.++..+.|+||+++.+++.
T Consensus        10 ~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_          10 ARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            556777777777777777777777777777665 5777777777777777777777777777777766654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.25  E-value=3.5e-13  Score=122.85  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             hccCCHHHHHH---HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCCC
Q 023608          204 LAVGGDATTSA---DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED--SEGRTALHFACGYGEVC  276 (280)
Q Consensus       204 ~~~g~~~~v~~---Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D--~~G~TPLH~Aa~~G~~e  276 (280)
                      +..|+.++++.   |++.|+++|.+|.+|+||||+||..|+.++|++|+++|++++..+  .+|+||||+||.+||+|
T Consensus        98 a~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1          98 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             HHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHH
Confidence            36677666554   789999999999999999999999999999999999999998865  45899999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=5.7e-12  Score=109.29  Aligned_cols=72  Identities=17%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..|+.++|+.|++.|+|+|.+|.+|+||||+|+..|+.++|++|+++|++++..+..+.||||+++..++++
T Consensus        49 ~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~  120 (291)
T d1s70b_          49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (291)
T ss_dssp             HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccc
Confidence            668999999999999999999999999999999999999999999999999999999999999999988764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=6.9e-12  Score=111.35  Aligned_cols=61  Identities=16%  Similarity=0.112  Sum_probs=51.2

Q ss_pred             HHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          214 ADNAGADEAEEV-GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       214 ~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .+...+.++|.. |.+|+||||+||..|+.++|++||++|++++.+|..|+||||+||..++
T Consensus        91 ~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          91 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            334467778865 8889999999999999999999999999999999999999999987664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.1e-12  Score=106.96  Aligned_cols=80  Identities=11%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      .+.++..+     ..+..+.+++|+..|.+++..+ ..|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+
T Consensus       112 ~t~l~~a~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~  186 (221)
T d1iknd_         112 HTCLHLAS-----IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW  186 (221)
T ss_dssp             CCHHHHHH-----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred             chhhhHHh-----hcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHH
Confidence            34555544     5677889999999999998766 56999999999999999999999999999999999999999999


Q ss_pred             HcCCCC
Q 023608          271 GYGEVC  276 (280)
Q Consensus       271 ~~G~~e  276 (280)
                      .+++.+
T Consensus       187 ~~~~~~  192 (221)
T d1iknd_         187 GRPSTR  192 (221)
T ss_dssp             TSSCHH
T ss_pred             HCCCHH
Confidence            887654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.3e-11  Score=95.10  Aligned_cols=71  Identities=24%  Similarity=0.266  Sum_probs=67.5

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          206 VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       206 ~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      .++.+.++.|+..+.+++..+..+.+||++++..++.+++++++++|++++.+|..|+||||+||..|+++
T Consensus        45 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~  115 (156)
T d1bd8a_          45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccc
Confidence            46778999999999999999999999999999999999999999999999999999999999999998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.6e-11  Score=94.02  Aligned_cols=100  Identities=18%  Similarity=0.108  Sum_probs=78.6

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA  251 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~  251 (280)
                      ++++.+.+.+.............++...     ..+....++.|+..+.+++..|..+.++||+|+..++.+++++|+++
T Consensus        47 ei~~~Ll~~~a~~~~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  121 (156)
T d1ihba_          47 EIARRLLLRGANPDLKDRTGFAVIHDAA-----RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  121 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH-----HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccccCcccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444443333333334444433     56777889999999999999999999999999999999999999998


Q ss_pred             CC-CCCCCCCCCCcHHHHHHHcCCCC
Q 023608          252 GA-DKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       252 GA-dvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ++ +++.+|.+|+||||+|+.+|+.+
T Consensus       122 ~~~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_         122 TASNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHH
Confidence            86 89999999999999999999865

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.7e-12  Score=107.22  Aligned_cols=66  Identities=23%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608          210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~  275 (280)
                      ++++.++..+++||.+|.+|+||||+||..|+.+++++|++.|++++.+|..|+||||+++.+++.
T Consensus        20 ~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~   85 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL   85 (221)
T ss_dssp             CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456677778888888888888888888888888888888888888888888888888888877654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.3e-11  Score=95.16  Aligned_cols=78  Identities=21%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             hHHHHhHHhhhhccCCHHHHHHHH----hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608          193 DVLQKLGEAMGLAVGGDATTSADN----AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF  268 (280)
Q Consensus       193 ~~l~~~~~~~g~~~g~~~~v~~Ll----~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~  268 (280)
                      +.+|.++     ..|+.++++.|+    +.|+++|.+|.+|+||||+||..|+.++|++|+++|++++..+..+.+++++
T Consensus         5 TpLh~A~-----~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           5 TPLHIAV-----VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CHHHHHH-----HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cHHHHHH-----HcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            4455444     667778777765    5999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 023608          269 ACGYGEV  275 (280)
Q Consensus       269 Aa~~G~~  275 (280)
                      |+..++.
T Consensus        80 a~~~~~~   86 (228)
T d1k1aa_          80 ACEHRSP   86 (228)
T ss_dssp             HHHTTCH
T ss_pred             ccccccc
Confidence            9877653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=1.5e-10  Score=96.59  Aligned_cols=72  Identities=17%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G-Advn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..++++.|+..|.+++.+|..|+||||+|+.+|+.+++++|++.+ .+++.+|.+|+||||+|+.+|+.+
T Consensus       114 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH
Confidence            557788999999999999999999999999999999999999999987 689999999999999999998764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=1.2e-10  Score=91.68  Aligned_cols=72  Identities=26%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608          205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC  276 (280)
Q Consensus       205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e  276 (280)
                      ..+..+.++.++.........+..+.+++|+++...+.+++++|+.++++++.+|.+|+||||+||..|+++
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~  114 (153)
T d1awcb_          43 QYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE  114 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhh
Confidence            345555666666666666666666666666666678888889999999999999999999999999999864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=1.7e-11  Score=101.12  Aligned_cols=66  Identities=30%  Similarity=0.364  Sum_probs=62.1

Q ss_pred             HHHHHHHHhCCCCccc-cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608          209 DATTSADNAGADEAEE-VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE  274 (280)
Q Consensus       209 ~~~v~~Ll~~gadvn~-~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~  274 (280)
                      .++|+.|+++|+|+|. .|.+|.||||+||.+|+.++|++|+..|++++.++..+++++|+++..++
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~   68 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA   68 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccc
Confidence            3789999999999998 58999999999999999999999999999999999999999999987665

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-10  Score=99.17  Aligned_cols=84  Identities=11%  Similarity=-0.049  Sum_probs=66.2

Q ss_pred             HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608          172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNA-GADEAEEVGNEDESIVHHTASVGDAEGLKNALA  250 (280)
Q Consensus       172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~-~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~  250 (280)
                      .++..+.+.+...-.+.....+.+|..+     ..++.+++++|++ .|+++|.+|.+|+||||+|+.+|+.++|++||+
T Consensus       200 ~i~~~Li~~ga~~n~~~~~g~t~L~~a~-----~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         200 AITHLLLDHGADVNVRGERGKTPLILAV-----EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHH-----HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCccCCCCCCccchhh-----hcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3444455455443333344445566655     6678899999997 699999999999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 023608          251 AGADKDEEDS  260 (280)
Q Consensus       251 ~GAdvn~~D~  260 (280)
                      +||++|++|.
T Consensus       275 ~GAd~n~~d~  284 (285)
T d1wdya_         275 RGASTDCGDL  284 (285)
T ss_dssp             HSSCSCCSSC
T ss_pred             CCCCCCcccC
Confidence            9999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.03  E-value=5.1e-12  Score=115.01  Aligned_cols=76  Identities=12%  Similarity=-0.067  Sum_probs=65.2

Q ss_pred             hhhhccCCHHHHHHHHhCCCCccccC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCC
Q 023608          201 AMGLAVGGDATTSADNAGADEAEEVG--NEDESIVHHTASVGDAEGLKNALAAGADK---DEEDSEGRTALHFACGYGEV  275 (280)
Q Consensus       201 ~~g~~~g~~~~v~~Ll~~gadvn~~D--~~g~TpLh~Aa~~G~~eivk~LL~~GAdv---n~~D~~G~TPLH~Aa~~G~~  275 (280)
                      .+.+..|+.++|++|++.|++++..+  .+|+||||+||.+|+.++|++|++.|++.   +..+.+++||||+|+.+||+
T Consensus       131 ~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~  210 (346)
T d2ajaa1         131 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  210 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHH
Confidence            33448899999999999999999876  45999999999999999999999999764   44566778899999999987


Q ss_pred             C
Q 023608          276 C  276 (280)
Q Consensus       276 e  276 (280)
                      +
T Consensus       211 ~  211 (346)
T d2ajaa1         211 N  211 (346)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=4.3e-11  Score=106.05  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608          222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC  270 (280)
Q Consensus       222 vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa  270 (280)
                      +|.+|..|+||||+||..|+.++|++||++||+++.+|..|+||||||+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            7899999999999999999999999999999999999999999999986