Citrus Sinensis ID: 023616

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccHHHHHcccccccHHHHHccccccccccccccccccHHHHHHHHHHHccccccccccEEcccccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEEcccEEEEEcccccccccccccccccccccccccc
cccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccccccccccEEEEEcccccc
MVYSIRSKSRSIISSMAALKTSVEstfasspinrpagsktmkLEKIRDAQqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscggldYFEEMKQRFLSFKKNKYFEELEHFQNLakaqspkngpsetNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQddvdsrqslTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWtldykgrkvdeeevgrhsikdhsfws
mvysirsksrsiISSMAALKTSvestfasspinrpagsktmklekirdaqqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAkaqspkngPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRkvdeeevgrhsikdhsfws
MVYsirsksrsiissMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKrrsfskletsssstaaaltrdrtsYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
*****************************************************************************************KSCGGLDYFEEMKQRFLSFKKNKYFEELEHF******************ALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGR*******************
**************************************************QGF*********************ALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD*DSRQSLTENWVVNAKVAKFRTKAYT**LSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEE**RHSI*D*SFW*
***********IISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRS***************************AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNL************TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
************ISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSS**************QDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
P16016319 Carbonic anhydrase, chlor N/A no 0.785 0.689 0.311 3e-29
P27140347 Carbonic anhydrase, chlor no no 0.814 0.657 0.318 7e-29
P42737259 Carbonic anhydrase 2, chl no no 0.678 0.733 0.327 6e-28
P27141321 Carbonic anhydrase, chlor N/A no 0.803 0.700 0.314 1e-27
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.585 0.496 0.344 1e-26
P17067328 Carbonic anhydrase, chlor N/A no 0.571 0.487 0.351 1e-26
P46510330 Carbonic anhydrase OS=Fla N/A no 0.585 0.496 0.344 2e-26
P46511330 Carbonic anhydrase OS=Fla N/A no 0.585 0.496 0.344 3e-26
P46281329 Carbonic anhydrase OS=Fla N/A no 0.585 0.498 0.344 5e-26
P46513190 Carbonic anhydrase 2 (Fra N/A no 0.446 0.657 0.424 5e-24
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function desciption
 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 128/270 (47%), Gaps = 50/270 (18%)

Query: 28  ASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQD 87
           A +PI  P   + M  E   +A      +L  +   +LE  ++S  A +T +     + D
Sbjct: 53  APAPIITPTLKEDMAYE---EAIAALKKLLSEKG--ELENEAASKVAQITSE-----LAD 102

Query: 88  GAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKN---------------- 131
           G          + +K+ F+ FKK KY +    +  L+K Q+PK                 
Sbjct: 103 GGTPSASYP-VQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVL 161

Query: 132 --GPSE---------------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 168
              P E                       AA+E+AV  L+V+NI+VIGHS CGGI+ LM 
Sbjct: 162 DFQPGEAFMVRNIANMVPVFDKDKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 221

Query: 169 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWI 228
             D   +     E+WV     AK +  A   + +F +QC HCEKE+++ S+ NLLTYP++
Sbjct: 222 FPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYPFV 281

Query: 229 EERVRKELLFIHGGYYDLLNCTFEKWTLDY 258
            + + K+ L + GGYYD +N +FE W L+Y
Sbjct: 282 RDGLVKKTLALQGGYYDFVNGSFELWGLEY 311
Reversible hydration of carbon dioxide.
Spinacia oleracea (taxid: 3562)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
302142053328 unnamed protein product [Vitis vinifera] 0.975 0.832 0.498 3e-73
147776525356 hypothetical protein VITISV_003553 [Viti 0.967 0.761 0.5 7e-73
359475660262 PREDICTED: carbonic anhydrase 2, chlorop 0.742 0.793 0.615 3e-70
225459107351 PREDICTED: carbonic anhydrase, chloropla 0.782 0.623 0.540 6e-69
116268416301 hypothetical protein [Prunus persica] 0.917 0.853 0.475 2e-66
296087414301 unnamed protein product [Vitis vinifera] 0.742 0.691 0.523 1e-64
359475658300 PREDICTED: carbonic anhydrase 2, chlorop 0.742 0.693 0.523 1e-64
224081947238 predicted protein [Populus trichocarpa] 0.714 0.840 0.539 1e-63
255563296313 carbonic anhydrase, putative [Ricinus co 0.935 0.837 0.426 9e-61
357489979309 Carbonic anhydrase [Medicago truncatula] 0.660 0.598 0.524 7e-60
>gi|302142053|emb|CBI19256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 162/325 (49%), Positives = 195/325 (60%), Gaps = 52/325 (16%)

Query: 5   IRSKSRSIISSMAALKTSVESTFAS--SPINR--------PAGSKTMKLEKIRDAQQGFT 54
           IRS  R I S+MAAL+ S  S  +S   P N         P      KL ++ +   G  
Sbjct: 5   IRSGIRWIGSTMAALRPSSVSFDSSVSGPTNSFMGLLHKSPIFDSRKKLVRVGETHLGSL 64

Query: 55  PVLKRRSFSKLETSSSSTAAA--LTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNK 112
           P +KR   S+LE SS S      L  ++   +++   K+  GLD+FEE+K RFL FKK K
Sbjct: 65  PSVKRNLVSRLEASSDSLGCGQHLMSNKMGNEMESLDKTDQGLDFFEELKHRFLCFKKQK 124

Query: 113 YFEELEHFQNLAKAQSPK--------------------------------------NGPS 134
           Y EE EHFQ LAKAQSPK                                      NGPS
Sbjct: 125 YLEEPEHFQALAKAQSPKFMVIACADSRVCPSNILGFQPGEAFMIRNVANLVPPVENGPS 184

Query: 135 ETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRT 194
           ETNAALEFAVNTLEV+NILVIGHS C GI+ L+RM+DDV+S  S  ENWV N KVAK RT
Sbjct: 185 ETNAALEFAVNTLEVENILVIGHSSCAGIETLVRMRDDVNS-SSFVENWVANGKVAKLRT 243

Query: 195 KAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKW 254
           KA   HL F QQC++CEKESI+ S+LNLLTYPWIE+R RK LL IHGGYYD LNCTFEKW
Sbjct: 244 KAAAGHLGFYQQCKYCEKESINHSLLNLLTYPWIEDRERKGLLSIHGGYYDFLNCTFEKW 303

Query: 255 TLDYKGRKVDEEEVGRHSIKDHSFW 279
           T+D+K R   E+E  +  +K+ +FW
Sbjct: 304 TIDFK-RSSIEKEGPKCLVKNRAFW 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147776525|emb|CAN74016.1| hypothetical protein VITISV_003553 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475660|ref|XP_003631728.1| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459107|ref|XP_002283876.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|116268416|gb|ABJ96373.1| hypothetical protein [Prunus persica] Back     alignment and taxonomy information
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081947|ref|XP_002306538.1| predicted protein [Populus trichocarpa] gi|222855987|gb|EEE93534.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357489979|ref|XP_003615277.1| Carbonic anhydrase [Medicago truncatula] gi|355516612|gb|AES98235.1| Carbonic anhydrase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 0.567 0.526 0.571 1.8e-56
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.575 0.555 0.505 3.7e-50
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.496 0.538 0.443 9e-34
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.492 0.416 0.414 4.2e-30
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.432 0.348 0.421 7.6e-29
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.521 0.521 0.437 2.5e-26
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.442 0.587 0.376 5.5e-18
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.353 0.480 0.342 2.1e-13
TIGR_CMR|SPO_3715216 SPO_3715 "carbonic anhydrase, 0.435 0.564 0.310 1.9e-12
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.507 0.672 0.281 1.7e-11
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 481 (174.4 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
 Identities = 92/161 (57%), Positives = 119/161 (73%)

Query:   121 QNLAKAQSP-KNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSL 179
             +N+A    P ++GP+ET AALEF+VNTL V+NILVIGHS CGGIQALM+M+D+ DSR S 
Sbjct:   143 RNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSR-SF 201

Query:   180 TENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 239
               NWVV  K AK  TKA  ++L FD QC+HCEK SI+ S+  LL YPWIEE+VR+  L +
Sbjct:   202 IHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSL 261

Query:   240 HGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 280
             HGGYY+ ++CTFEKWT+DY   +  ++E    ++KD S WS
Sbjct:   262 HGGYYNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 302
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.691
4th Layer4.2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 3e-71
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 5e-60
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 2e-55
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 3e-40
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 9e-33
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 2e-26
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 3e-25
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 8e-25
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 7e-18
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 4e-17
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 7e-09
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 2e-04
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 5e-04
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  221 bits (563), Expect = 3e-71
 Identities = 118/264 (44%), Positives = 157/264 (59%), Gaps = 43/264 (16%)

Query: 55  PVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYF 114
           P   RR  + L+  +S     LT++     +     +    D F++MKQRFL+FKK KY 
Sbjct: 43  PASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNT----DVFDDMKQRFLAFKKLKYM 98

Query: 115 EELEHFQNLAKAQSPK--------------------------------------NGPSET 136
           ++ EH++NLA AQ+PK                                      +GP+ET
Sbjct: 99  DDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTET 158

Query: 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKA 196
            AALEF+VNTL V+NILVIGHS CGGIQALM+M+D+ DSR S   NWVV  K AK  TKA
Sbjct: 159 KAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSR-SFIHNWVVVGKKAKESTKA 217

Query: 197 YTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTL 256
             ++L FD QC+HCEK SI+ S+  LL YPWIEE+VR+  L +HGGYY+ ++CTFEKWT+
Sbjct: 218 VASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTV 277

Query: 257 DYKGRKVDEEEVGRHSIKDHSFWS 280
           DY   +  ++E    ++KD S WS
Sbjct: 278 DYAASRGKKKEGSGIAVKDRSVWS 301

Length = 301
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
PLN03006301 carbonate dehydratase 100.0
PLN03014347 carbonic anhydrase 100.0
PLN03019330 carbonic anhydrase 100.0
PLN00416258 carbonate dehydratase 100.0
PLN02154290 carbonic anhydrase 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 99.97
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.94
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.9
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.83
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=6.9e-53  Score=391.10  Aligned_cols=228  Identities=50%  Similarity=0.866  Sum_probs=198.8

Q ss_pred             hHHHHHhhhhhhhccc-cccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHHHHHhh
Q 023616           46 IRDAQQGFTPVLKRRS-FSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA  124 (280)
Q Consensus        46 ~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~~La  124 (280)
                      ..-++.+|...+|++. +++.+|+  +|+++||+||+....    +..++++++++|++||.+|+..++.+++++|++|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La  108 (301)
T PLN03006         35 LKTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAI----DRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLA  108 (301)
T ss_pred             cceeEecccccccccccchhhhhh--hchHHHHHHHhhccC----CCCCcccHHHHHHHHHHhchhhccccCHHHHHHhc
Confidence            3446788888877665 6779999  999999999986553    22457999999999999999999999999999999


Q ss_pred             ccCCCC---------------------------------CCCC-----chHHHHHHHHHhcCcceEEEeccCCchHHHHH
Q 023616          125 KAQSPK---------------------------------NGPS-----ETNAALEFAVNTLEVQNILVIGHSDCGGIQAL  166 (280)
Q Consensus       125 ~GQ~P~---------------------------------~~p~-----~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa  166 (280)
                      +||+|+                                 +.|.     ++.+||||||.+|||++|||||||+||||+|+
T Consensus       109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa  188 (301)
T PLN03006        109 DAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL  188 (301)
T ss_pred             cCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence            999999                                 0121     37899999999999999999999999999999


Q ss_pred             hhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEc
Q 023616          167 MRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL  246 (280)
Q Consensus       167 l~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi  246 (280)
                      ++..+.+. ..++|..|+..+++++..+.....+..++++++.|+++||+.|++||++||+|++++++|+|.|||||||+
T Consensus       189 l~~~~~g~-~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi  267 (301)
T PLN03006        189 MKMEDEGD-SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNF  267 (301)
T ss_pred             hhccccCC-chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEEC
Confidence            98766543 34799999999998887765433344567788899999999999999999999999999999999999999


Q ss_pred             CCceEEEeeccCCCCcCCcccCcceeeccCCCCC
Q 023616          247 LNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS  280 (280)
Q Consensus       247 ~tG~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
                      .||+|+.|+++|+.++++-|+||+|++|||+|||
T Consensus       268 ~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (301)
T PLN03006        268 VDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS  301 (301)
T ss_pred             CCceEEEecccccccccccccCCceeeecccccC
Confidence            9999999999999999987789999999999998

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 5e-27
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 1e-06
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 2e-06
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 2e-06
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 2e-06
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 2e-06
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 2e-06
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 4e-06
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 6e-04
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 6e-04
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 8e-04
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 95/199 (47%), Gaps = 39/199 (19%)
Query: 99  EEMKQRFLSFKKNKYFEELEHFQNLAKAQSP----------KNGPSE------------- 135
           E +K  FL FKK KY +    +  LAK QSP          +  PS              
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 136 ----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSL 179
                           T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D       
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDF 134
Query: 180 TENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 239
            E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + L +
Sbjct: 135 IEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLAL 194
Query: 240 HGGYYDLLNCTFEKWTLDY 258
            GGYYD +  +FE W L++
Sbjct: 195 KGGYYDFVKGSFELWGLEF 213
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 4e-53
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 2e-39
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 3e-39
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 3e-39
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 1e-37
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 3e-33
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 2e-32
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 7e-32
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 1e-26
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 6e-15
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 2e-14
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 2e-09
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 5e-04
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  171 bits (435), Expect = 4e-53
 Identities = 68/203 (33%), Positives = 94/203 (46%), Gaps = 39/203 (19%)

Query: 96  DYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK------------------------- 130
           +  E +K  FL FKK KY +    +  LAK QSP                          
Sbjct: 12  EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71

Query: 131 --------------NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSR 176
                            + T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D    
Sbjct: 72  VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 131

Query: 177 QSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKEL 236
               E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + 
Sbjct: 132 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 191

Query: 237 LFIHGGYYDLLNCTFEKWTLDYK 259
           L + GGYYD +  +FE W L++ 
Sbjct: 192 LALKGGYYDFVKGSFELWGLEFG 214
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 99.94
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.94
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.93
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 99.87
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=6.8e-41  Score=299.61  Aligned_cols=171  Identities=40%  Similarity=0.665  Sum_probs=147.0

Q ss_pred             CCcHHHHHHHHHHHHHhHhcccccChHHHHHhhccCCCC---------------------------------CCCC----
Q 023616           92 CGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK---------------------------------NGPS----  134 (280)
Q Consensus        92 ~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~~La~GQ~P~---------------------------------~~p~----  134 (280)
                      .+|.+++++|++||++|+.+++.+++++|++|++||+|+                                 +.|.    
T Consensus         8 ~~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~   87 (221)
T 1ekj_A            8 IPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAK   87 (221)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccc
Confidence            467789999999999999999988999999999999999                                 1121    


Q ss_pred             --chHHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHH
Q 023616          135 --ETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEK  212 (280)
Q Consensus       135 --~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~  212 (280)
                        ++++||||||.+|||++|||||||+||||+|++...+.+....++++.|++.+.|+..........++..+.+..+++
T Consensus        88 ~~~~~asleyAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (221)
T 1ekj_A           88 YAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEK  167 (221)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHH
Confidence              367999999999999999999999999999999876544333479999999999988766554445666667788899


Q ss_pred             HHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceEEEeeccCCCCc
Q 023616          213 ESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRK  262 (280)
Q Consensus       213 ~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~~~~  262 (280)
                      +||+.|+++|++||+|++++++|+|.||||+||++||+|+++.+|+..++
T Consensus       168 ~nV~~~v~~L~~~p~v~~~~~~g~l~v~G~~ydi~tG~v~~~~~~~~~~~  217 (221)
T 1ekj_A          168 EAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSS  217 (221)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCCeEEEEecCCCCCc
Confidence            99999999999999999999999999999999999999999999998764
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 6e-29
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 8e-21
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 1e-19
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 3e-17
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 4e-14
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  107 bits (268), Expect = 6e-29
 Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 39/200 (19%)

Query: 98  FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK--------------------------- 130
            E +K  FL FKK KY +    +  LAK QSP                            
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 131 ------------NGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 178
                          + T AA+E+AV  L+V NI+VIGHS CGGI+ L+    D      
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTD 122

Query: 179 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLF 238
             E WV     AK + KA      F + C HCEKE+++ S+ NLLTYP++ E +  + L 
Sbjct: 123 FIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLA 182

Query: 239 IHGGYYDLLNCTFEKWTLDY 258
           + GGYYD +  +FE W L++
Sbjct: 183 LKGGYYDFVKGSFELWGLEF 202
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.93
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=4.4e-41  Score=295.51  Aligned_cols=167  Identities=41%  Similarity=0.692  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHhHhcccccChHHHHHhhccCCCC---------------------------------CCCC------ch
Q 023616           96 DYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK---------------------------------NGPS------ET  136 (280)
Q Consensus        96 ~~l~~L~~Gn~rF~~~~~~~~~~~f~~La~GQ~P~---------------------------------~~p~------~v  136 (280)
                      +++++|++||+||+++++.+++++|++|++||+|+                                 +.+.      ++
T Consensus         1 ~a~e~l~~G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~C~DSRv~~e~if~~~~GdlfvvRnaGn~v~~~~~~~~~~~   80 (210)
T d1ekja_           1 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGT   80 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHH
T ss_pred             ChHHHHHHHHHHHHhCccccCHHHHHHHhcCCCCceEEEeccccCCChhhhccCCCCcEEEEeccCCccCccccccchhh
Confidence            47999999999999999999999999999999999                                 1122      37


Q ss_pred             HHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 023616          137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESIS  216 (280)
Q Consensus       137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~  216 (280)
                      ++||||||.+|+|++|||||||+||||+||++....+....+++..|+..+.++.........+.+.++..+.++++||+
T Consensus        81 ~~sleyav~~l~v~~IVVlGHt~CGav~Aa~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~nV~  160 (210)
T d1ekja_          81 GAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVN  160 (210)
T ss_dssp             HHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCceEEEEEcCcchHHHHHhhhhhhccCccCchHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999998876665555899999999999998877665566677778889999999


Q ss_pred             HHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceEEEeeccCCCCc
Q 023616          217 RSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRK  262 (280)
Q Consensus       217 ~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~~~~  262 (280)
                      .|+++|++||+|++++++|+|.||||+||++||+|++|+.+++.+.
T Consensus       161 ~~v~~L~~~p~I~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~g~~~  206 (210)
T d1ekja_         161 ASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSS  206 (210)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCC
T ss_pred             HHHHHHHcCHHHHHHHHcCCeEEEEEEEECCCcEEEEEeccCCCCC
Confidence            9999999999999999999999999999999999999999998754
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure