Citrus Sinensis ID: 023623

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MNSGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHccccc
MNSGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAheesksvtkaPAMKAIKKRMEKDVDEVGKISRFIKSKIEELdrenltsrqkpgcgkgtgvdrsrtattLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTvtgkradeETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIkpwssnkga
mnsgelglenfFKKVQDIDKEYEKLEKLLKklqgaheesksvtkapamkaikkrmekdvdevgkiSRFIKskieeldrenltsrqkpgcgkgtgvdrsrtattlglkkkfkdkmgefQVLRenihqeyrevverrvytvtgkradeetidqLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKpwssnkga
MNSGELGLENFFKKVQDIDkeyeklekllkklQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQeyrevverrvytvtGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCiaiiilliivaiivvaviKPWSSNKGA
**********FFK************************************************************************************************FKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIE******IFQKAI******QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI***************************SRKWMCIAIIILLIIVAIIVVAVIKPW******
****ELG**NFFKKVQDIDKEYEKLEKLLKKLQ***************************EVGKISRFIKSKI***************************ATTLGLKKKFKDKMGEFQVLR*******************************************************TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIK*WS*****
MNSGELGLENFFKKVQDIDKEYEKLEKLLKK**************PAMKAIKKRMEKDVDEVGKISRFIKSKIEELDR******************RSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQV***********************SRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
*****LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQ******GTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSS****
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MNSGELGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAExxxxxxxxxxxxxxxxxxxxxFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
Q9SRV7306 Putative syntaxin-131 OS= yes no 0.996 0.908 0.798 1e-123
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.985 0.904 0.851 1e-114
O64791303 Syntaxin-124 OS=Arabidops no no 0.949 0.874 0.475 5e-71
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.903 0.826 0.515 3e-70
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.892 0.835 0.514 8e-70
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.985 0.794 0.505 1e-69
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.978 0.800 0.498 4e-65
Q42374310 Syntaxin-related protein no no 0.867 0.780 0.417 6e-51
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.928 0.849 0.330 1e-38
P32856288 Syntaxin-2 OS=Homo sapien yes no 0.888 0.861 0.279 2e-19
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function desciption
 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/278 (79%), Positives = 255/278 (91%)

Query: 2   NSGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDE 61
           NSG+LGL  FFKKVQ+I+K+YEKL+K L KLQGAHEE+K+VTKAPAMK+IK+RME+DVDE
Sbjct: 29  NSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDE 88

Query: 62  VGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLR 121
           VG+ISRFIK KIEELDRENL +R KPGCGKGTGVDR+RTATT+ +KKKFKDK+ EFQ LR
Sbjct: 89  VGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLR 148

Query: 122 ENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEI 181
           +NI QEYREVVERRV+TVTG+RADEE ID+LIETGDSEQIFQKAI+EQGRGQIMDTLAEI
Sbjct: 149 QNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEI 208

Query: 182 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241
           QERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN  L KA 
Sbjct: 209 QERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAV 268

Query: 242 KLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA 279
           K QK+SRKWMCIAI+ILLII+ I V++V+KPW+   GA
Sbjct: 269 KSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
255569518304 syntaxin, putative [Ricinus communis] gi 1.0 0.917 0.856 1e-127
224146010304 predicted protein [Populus trichocarpa] 1.0 0.917 0.870 1e-124
297828858306 SYP131 [Arabidopsis lyrata subsp. lyrata 0.996 0.908 0.798 1e-122
15228637306 syntaxin 1B/2/3 [Arabidopsis thaliana] g 0.996 0.908 0.798 1e-122
388519397305 unknown [Medicago truncatula] 0.996 0.911 0.794 1e-120
225439283307 PREDICTED: putative syntaxin-131 [Vitis 0.985 0.895 0.876 1e-120
115315688276 syntaxin [Nicotiana benthamiana] 0.874 0.884 0.860 1e-117
449446742308 PREDICTED: putative syntaxin-131-like [C 0.996 0.902 0.805 1e-114
18415701304 syntaxin-132 [Arabidopsis thaliana] gi|2 0.985 0.904 0.851 1e-112
297806847304 SYP132 [Arabidopsis lyrata subsp. lyrata 0.985 0.904 0.840 1e-111
>gi|255569518|ref|XP_002525726.1| syntaxin, putative [Ricinus communis] gi|223535026|gb|EEF36709.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/279 (85%), Positives = 267/279 (95%)

Query: 1   MNSGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVD 60
           MNSG+LGLENFFK VQ I+KE EKL++LLKKLQ AHEE+K+VT+APAM+AI++RM+KDVD
Sbjct: 26  MNSGDLGLENFFKNVQGIEKENEKLDRLLKKLQDAHEETKAVTRAPAMRAIRQRMDKDVD 85

Query: 61  EVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVL 120
           EVGKI+R +KSKIEELDREN+++RQKPGCGKGTGVDRSRT+TT+ LKKK KDKM EFQ L
Sbjct: 86  EVGKIARTVKSKIEELDRENISNRQKPGCGKGTGVDRSRTSTTMALKKKLKDKMAEFQNL 145

Query: 121 RENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAE 180
           RE IHQEYR+VV+RRV+TVTG RADEETID+LIETGDSEQIFQKAIQEQGRGQIMDTLAE
Sbjct: 146 RETIHQEYRDVVDRRVFTVTGARADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAE 205

Query: 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 240
           IQERHDAVRDLERKLL+LQQ+FLDMAVLVDAQG+MLDNIESQVSSAVDHVQSGNTALQKA
Sbjct: 206 IQERHDAVRDLERKLLDLQQVFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQKA 265

Query: 241 KKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNKGA 279
           KKLQ+NSRKWMCIAIIILLIIV IIVVAVIKPW++NKGA
Sbjct: 266 KKLQRNSRKWMCIAIIILLIIVVIIVVAVIKPWNNNKGA 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146010|ref|XP_002325846.1| predicted protein [Populus trichocarpa] gi|222862721|gb|EEF00228.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297828858|ref|XP_002882311.1| SYP131 [Arabidopsis lyrata subsp. lyrata] gi|297328151|gb|EFH58570.1| SYP131 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228637|ref|NP_187030.1| syntaxin 1B/2/3 [Arabidopsis thaliana] gi|28380139|sp|Q9SRV7.1|SY131_ARATH RecName: Full=Putative syntaxin-131; Short=AtSYP131 gi|6006872|gb|AAF00648.1|AC009540_25 s-syntaxin-like protein [Arabidopsis thaliana] gi|332640474|gb|AEE73995.1| syntaxin 1B/2/3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388519397|gb|AFK47760.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225439283|ref|XP_002266162.1| PREDICTED: putative syntaxin-131 [Vitis vinifera] gi|296089302|emb|CBI39074.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115315688|gb|ABI93942.1| syntaxin [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|449446742|ref|XP_004141130.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18415701|ref|NP_568187.1| syntaxin-132 [Arabidopsis thaliana] gi|28380129|sp|Q8VZU2.1|SY132_ARATH RecName: Full=Syntaxin-132; Short=AtSYP132 gi|17380724|gb|AAL36192.1| putative syntaxin [Arabidopsis thaliana] gi|21436145|gb|AAM51319.1| putative syntaxin [Arabidopsis thaliana] gi|332003859|gb|AED91242.1| syntaxin-132 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806847|ref|XP_002871307.1| SYP132 [Arabidopsis lyrata subsp. lyrata] gi|297317144|gb|EFH47566.1| SYP132 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.996 0.908 0.679 9.7e-96
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.992 0.800 0.415 2.3e-55
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.896 0.819 0.464 6.1e-55
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.885 0.828 0.457 1.3e-54
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.903 0.831 0.440 1.5e-53
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.985 0.806 0.421 1.5e-51
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.863 0.777 0.369 1.4e-41
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.860 0.786 0.307 3e-30
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.720 0.601 0.326 5.7e-20
FB|FBgn0013343291 Syx1A "Syntaxin 1A" [Drosophil 0.835 0.800 0.246 2.2e-18
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 189/278 (67%), Positives = 214/278 (76%)

Query:     2 NSGELGLENFFKKVQDIDXXXXXXXXXXXXXQGAHEESKSVTKAPAMKAIKKRMEKDVDE 61
             NSG+LGL  FFKKVQ+I+             QGAHEE+K+VTKAPAMK+IK+RME+DVDE
Sbjct:    29 NSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDE 88

Query:    62 VGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLR 121
             VG+ISRFIK KIEELDRENL +R KPGCGKGTGVDR+RTATT+ +KKKFKDK+ EFQ LR
Sbjct:    89 VGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLR 148

Query:   122 ENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEI 181
             +NI Q              G+RADEE ID+LIETGDSEQIFQKAI+EQGRGQIMDTLAEI
Sbjct:   149 QNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEI 208

Query:   182 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241
             QERHDAVRDLE+KLL+LQQ+FLDMAVLVDAQG+MLDNIE+ VSSAVDHVQSGN  L KA 
Sbjct:   209 QERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAV 268

Query:   242 KLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 279
             K QK+SRKWMC                  KPW+   GA
Sbjct:   269 KSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0013343 Syx1A "Syntaxin 1A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRV7SY131_ARATHNo assigned EC number0.79850.99640.9084yesno
Q8VZU2SY132_ARATHNo assigned EC number0.85140.98560.9046nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 3e-33
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 5e-20
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 3e-18
pfam0573962 pfam05739, SNARE, SNARE domain 3e-14
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 1e-13
pfam00804103 pfam00804, Syntaxin, Syntaxin 7e-13
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 9e-12
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 2e-11
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  118 bits (298), Expect = 3e-33
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 8   LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISR 67
           LE FF++V++I    +K+ + +++LQ  H +  +   A     +K+ +E  V E+ K+++
Sbjct: 1   LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDA--DPELKQELESLVQEIKKLAK 58

Query: 68  FIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQE 127
            IK K++EL+  N  +    G      VDR R     GL KKF + M EF   +    + 
Sbjct: 59  EIKGKLKELEESNEQNEALNGSS----VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRER 114

Query: 128 YREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA 165
           Y+E ++R++    G+  DEE  D L     SE    + 
Sbjct: 115 YKERIQRQLEITGGEATDEELEDMLESGN-SEIFTSQI 151

Length = 151
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 100.0
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.94
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.9
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.86
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.66
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.59
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.54
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.47
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.34
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.99
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.64
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.45
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.92
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.32
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.22
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 97.13
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.07
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.9
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 94.57
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 92.6
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 91.91
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 91.61
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 91.17
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 89.96
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 89.5
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 86.63
PF0450582 Dispanin: Interferon-induced transmembrane protein 85.33
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 85.05
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 84.52
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 83.7
PF1291156 OppC_N: N-terminal TM domain of oligopeptide trans 83.68
PF1071785 ODV-E18: Occlusion-derived virus envelope protein 81.97
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 81.0
KOG2678244 consensus Predicted membrane protein [Function unk 80.46
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-57  Score=395.87  Aligned_cols=264  Identities=43%  Similarity=0.673  Sum_probs=244.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023623            6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQ   85 (279)
Q Consensus         6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~   85 (279)
                      .+|+.||..|++|+..|..+...+.+|.++|...+.  .|...++++++|+.+..++.+.++.|+.+|+.+++.+...+.
T Consensus        33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~  110 (297)
T KOG0810|consen   33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET  110 (297)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            679999999999999999999999999999976554  566778999999999999999999999999999999876544


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH
Q 023623           86 KPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA  165 (279)
Q Consensus        86 ~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~  165 (279)
                      .+   +.++..|+|++++..++++|.++|.+|+.+|.+|+.+|+.++.|+|.++.+..++|++++.++++|+++.|++.+
T Consensus       111 ~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~  187 (297)
T KOG0810|consen  111 QN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKA  187 (297)
T ss_pred             cC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHH
Confidence            33   334568999999999999999999999999999999999999998877765599999999999999999999988


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623          166 IQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK  245 (279)
Q Consensus       166 l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~  245 (279)
                      +.  ++++++.+|.++++||.+|++||++|.|||+||.|||+||+.||+|||+||+||++|.+||++|..++++|++||+
T Consensus       188 i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qk  265 (297)
T KOG0810|consen  188 IQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQK  265 (297)
T ss_pred             HH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87  5667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhccccCC
Q 023623          246 NSRKWMCIAIIILLIIVAIIVVAVIKPWSSN  276 (279)
Q Consensus       246 ~~rk~~~~~i~i~~ii~~~i~~~i~~~~~~~  276 (279)
                      ++|||+||||++++|+++++++++++||...
T Consensus       266 kaRK~k~i~ii~~iii~~v~v~~i~~~~~~~  296 (297)
T KOG0810|consen  266 KARKWKIIIIIILIIIIVVLVVVIVVPLVLF  296 (297)
T ss_pred             HhhhceeeeehHHHHHHHHHhhhhccccccC
Confidence            9999999999999999999999999999764

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [] Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C Back     alignment and domain information
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 7e-14
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 7e-12
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 2e-11
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 4e-11
1jth_B77 Crystal Structure And Biophysical Properties Of A C 4e-11
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 4e-11
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 3e-10
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 1e-09
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 2e-09
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 4e-09
3rk2_B65 Truncated Snare Complex Length = 65 7e-09
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 1e-07
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 5e-07
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 18/197 (9%)
Query: 59  VDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQ 118
           + ++ K +  ++SK++ +++   +  Q+ G  + +   R R      L +KF + M E+ 
Sbjct: 91  MSDIKKTANKVRSKLKSIEQ---SIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYN 147
Query: 119 VLRENIHQXXXXXXXXXXXXXXGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDT- 177
             + + ++              G+    E ++ ++E+G+   IF         G IMD+ 
Sbjct: 148 ATQSD-YRERCKGRIQRQLEITGRTTTSEELEDMLESGNP-AIF-------ASGIIMDSS 198
Query: 178 -----LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232
                L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+ 
Sbjct: 199 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 258
Query: 233 GNTALQKAKKLQKNSRK 249
             +  +KA K Q  +R+
Sbjct: 259 AVSDTKKAVKYQSKARR 275
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 5e-45
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 6e-43
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 5e-39
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 4e-30
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 6e-26
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 9e-24
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 3e-22
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 6e-22
1s94_A180 S-syntaxin; three helix bundle, structural plastic 6e-22
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 5e-21
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 2e-20
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 1e-11
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  152 bits (384), Expect = 5e-45
 Identities = 59/249 (23%), Positives = 131/249 (52%), Gaps = 8/249 (3%)

Query: 5   ELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGK 64
           +  ++ FF++V++I    +K+ + +++++  H  S  +      +  K+ +E+ + ++ K
Sbjct: 27  DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH--SAILASPNPDEKTKEELEELMSDIKK 84

Query: 65  ISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENI 124
            +  ++SK++ +++      Q+ G  + +   R R      L +KF + M E+   + + 
Sbjct: 85  TANKVRSKLKSIEQSI---EQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDY 141

Query: 125 HQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQER 184
            +  +  ++R+   +TG+    E ++ ++E+G+        I +    +    L+EI+ R
Sbjct: 142 RERCKGRIQRQ-LEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETR 198

Query: 185 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQ 244
           H  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q
Sbjct: 199 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 258

Query: 245 KNSRKWMCI 253
             +R+   +
Sbjct: 259 SKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.97
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.94
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.94
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.92
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.91
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.9
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.9
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.87
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.86
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.82
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 98.92
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.51
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.42
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.28
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.83
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.8
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.55
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.49
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.87
3b5n_D64 Protein transport protein SEC9; snare complex, syn 95.61
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.29
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.04
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.44
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 91.54
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 88.34
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=4.1e-48  Score=339.91  Aligned_cols=243  Identities=23%  Similarity=0.430  Sum_probs=194.8

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623            3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT   82 (279)
Q Consensus         3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~   82 (279)
                      +++++|+.||+.|++|+..|..|+.++.+|+++|+.+++.+++  ++.++.+|+.++.+|+++++.|+..|+.|+.....
T Consensus        25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~  102 (267)
T 1dn1_B           25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ  102 (267)
T ss_dssp             --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4677999999999999999999999999999999987765443  34789999999999999999999999999987542


Q ss_pred             hccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHH
Q 023623           83 SRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIF  162 (279)
Q Consensus        83 ~~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~  162 (279)
                      .   +++++++++.|+|++|+..|+++|+++|.+|+.+|..|+..++.++.|+| .+.||++|+++++.++++|++..|.
T Consensus       103 ~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~  178 (267)
T 1dn1_B          103 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFA  178 (267)
T ss_dssp             H---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTT
T ss_pred             c---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCcHHHHH
Confidence            1   12234467789999999999999999999999999999999999998865 6778999999999999998876443


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623          163 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK  242 (279)
Q Consensus       163 q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~  242 (279)
                      +..+..  ...++.++.++++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|.+||+.|..+|.+|.+
T Consensus       179 q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~  256 (267)
T 1dn1_B          179 SGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK  256 (267)
T ss_dssp             TTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332322  235667899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccchhHHH
Q 023623          243 LQKNSRKWMCI  253 (279)
Q Consensus       243 ~~~~~rk~~~~  253 (279)
                      |++++|||+||
T Consensus       257 ~q~~~rkk~~~  267 (267)
T 1dn1_B          257 YQSKARRKKIM  267 (267)
T ss_dssp             -----------
T ss_pred             HHHHhcCcccC
Confidence            99999999886
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 1e-28
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 6e-21
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 38/205 (18%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 8   LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISR 67
              F  K+  I+++ +K +  + ++   H+   +         ++  ++  V +   +  
Sbjct: 4   FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQF 63

Query: 68  FIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQE 127
            +K++I+   R+                D ++ A     +++F   + +++++  N  +E
Sbjct: 64  KLKNEIKSAQRDG-------------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEE 110

Query: 128 YREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDA 187
            +E  +R+   +  +  ++E    + + G  +   Q  +    RG+    LAE+Q RH  
Sbjct: 111 NKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQE 170

Query: 188 VRDLERKLLELQQIFLDMAVLVDAQ 212
           +  LE+ + EL Q+F DM  LV  Q
Sbjct: 171 LLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.95
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.83
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 94.12
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 84.76
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-27  Score=195.92  Aligned_cols=194  Identities=22%  Similarity=0.404  Sum_probs=164.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023623            6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQ   85 (279)
Q Consensus         6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~   85 (279)
                      +.+..||+.|++|+..|..|+..+..|..++...+..+++.....++.+++.++.+++.+++.|+..++.+...      
T Consensus         2 ~d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~------   75 (196)
T d1fioa_           2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------
Confidence            45899999999999999999999999999999887777788888899999999999999999999999888754      


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH
Q 023623           86 KPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA  165 (279)
Q Consensus        86 ~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~  165 (279)
                             .+..+++++++..|+.+|.+++..|+.+|..|...++.++.|++ .+.+|++++++++..+..++....+.+.
T Consensus        76 -------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (196)
T d1fioa_          76 -------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY-MIIQPEATEDEVEAAISDVGGQQIFSQA  147 (196)
T ss_dssp             -------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCCHHHHHHHTSHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCccchhhhHhhccccchHHHHHH
Confidence                   13468999999999999999999999999999999999998776 4567899999998887665444444433


Q ss_pred             -HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623          166 -IQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQG  213 (279)
Q Consensus       166 -l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qg  213 (279)
                       +......++...+.++++|+++|.+||++|.|||+||.|||+||.+|.
T Consensus       148 ~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         148 LLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             TC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence             233333455678899999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure