Citrus Sinensis ID: 023625
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.996 | 0.778 | 0.543 | 3e-86 | |
| Q8GSN1 | 348 | Myricetin O-methyltransfe | N/A | no | 0.992 | 0.795 | 0.508 | 3e-76 | |
| B0EXJ8 | 355 | Tabersonine 16-O-methyltr | N/A | no | 0.989 | 0.777 | 0.498 | 4e-72 | |
| Q93WU3 | 356 | Chavicol O-methyltransfer | N/A | no | 0.985 | 0.772 | 0.485 | 4e-72 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.989 | 0.773 | 0.461 | 7e-72 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.989 | 0.784 | 0.466 | 7e-71 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.989 | 0.784 | 0.466 | 8e-71 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.989 | 0.784 | 0.466 | 1e-70 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.982 | 0.761 | 0.481 | 5e-70 | |
| Q93WU2 | 357 | Eugenol O-methyltransfera | N/A | no | 0.985 | 0.770 | 0.487 | 2e-69 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
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Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 201/285 (70%), Gaps = 7/285 (2%)
Query: 1 MRILVHSGFFAQQK------DDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MRILVHSGF A Q+ ++ Y LT ASRLLL D L P V + DP+ T +H L
Sbjct: 74 MRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILTKPWHYL 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W QNDDP+ F TA+ + WD EP+ + F + M +D+ L+ +++K+ + VF GL
Sbjct: 134 SAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQGVFAGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SLVDV GGTG +A+AIA AFP + CTV DL HVV LQG+ NL++ G+MFEAIP A+
Sbjct: 194 NSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSK-NLNYFAGDMFEAIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD 234
A+LLKWILH+W++EE VK+LK+C+EAIPSK+ GGKVIIIDM + D +S ETQL FD
Sbjct: 253 AILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTETQLFFD 312
Query: 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+ M+ G+ER ++W+KLFL AGFSHYKITP+LG+RSLIE YP
Sbjct: 313 MTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1 | Back alignment and function description |
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Score = 285 bits (728), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 198/281 (70%), Gaps = 4/281 (1%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
MRILV +G+F++++ + Y LTP +RLLLK+ PL + V V A++ + W QN
Sbjct: 70 MRILVAAGYFSEEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAMSEWFQN 129
Query: 61 DDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDV 120
+D + FETAHGK WD A E K+ F +M DS L++ ++I + +FEGL SLVDV
Sbjct: 130 EDLTAFETAHGKNFWDFGA-EDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDV 188
Query: 121 AGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKW 180
GGTG +A+AIA +FPD+KCTVFDLPHVV NL+ T +NL+F+GG+MFE IP ANA+LLKW
Sbjct: 189 GGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSANAILLKW 247
Query: 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI--ENQSQDKESMETQLCFDILMV 238
ILH+W DEE VK+LK C++AIP K++GGKVI+I+ + + +++E+++ Q+ DI M+
Sbjct: 248 ILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISSDIDMM 307
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
F KER+ ++W LF AGFS YKI PM+ RS IE YP
Sbjct: 308 VFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
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Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 9 |
| >sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1 | Back alignment and function description |
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Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 143/287 (49%), Positives = 191/287 (66%), Gaps = 11/287 (3%)
Query: 1 MRILVHSGFFAQQKDDE-----YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLG 55
MR+L +GF ++++ D Y LTP+SR+LLK PL V +ADP+ A+ L
Sbjct: 72 MRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESLS 131
Query: 56 TWLQNDDPS--LFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
W QN+D S FETAHGK W ++ + F + M +DS+LI+ ++I + K +FEG
Sbjct: 132 DWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEG 191
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L SLVD+ GGTG +A+AIA FP +KCTVFDLPHVV NL+ + +N++F+ G+MFE IP A
Sbjct: 192 LASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLE-SKENVEFVAGDMFEKIPSA 250
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
NA+ LKWILH+WNDE+ VK+LK CK+AIP+K GGKVIIIDM + + +D ++TQ
Sbjct: 251 NAIFLKWILHDWNDEDCVKILKSCKKAIPAK--GGKVIIIDMVMYSDKKDDHLVKTQTSM 308
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG-VRSLIEAYP 279
D+ M+ F KER +W LF AGFS YKI P L RSLIE YP
Sbjct: 309 DMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
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16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1 | Back alignment and function description |
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Score = 271 bits (692), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 197/284 (69%), Gaps = 9/284 (3%)
Query: 1 MRILVHSGFFAQQKDDE----YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGT 56
MR LV+S FF ++ + Y+LTPASRLLLK PL AP V +V DP +T +H +
Sbjct: 77 MRALVNSNFFIEENSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMSE 136
Query: 57 WLQNDD-PSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLK 115
W ++++ + FE A+G W+++A++P F + M DS L+A ++ KD K V +G++
Sbjct: 137 WFKHENHATQFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKDYKHVIDGIR 196
Query: 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANA 175
+LVDV GG G MA+AI A P +KCTV DLPHVV L+ T D L ++GG+MF++IP A+A
Sbjct: 197 TLVDVGGGNGTMAKAIVEAVPTMKCTVLDLPHVVAGLEST-DKLSYIGGDMFQSIPSADA 255
Query: 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI 235
+LLK+I+H+W+DEE +K+LK+CK+A+ GGKVIIID+ + E +E QL FD+
Sbjct: 256 ILLKFIIHDWDDEEGLKILKRCKDAV---GIGGKVIIIDVVVGVNHDVDEVLEDQLHFDM 312
Query: 236 LMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
M+S F KER++++W+KL AAGF+ YK+TP GVRSLIEAYP
Sbjct: 313 AMMSYFNAKERTMNEWEKLISAAGFTSYKLTPAFGVRSLIEAYP 356
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Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
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Score = 270 bits (690), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 188/286 (65%), Gaps = 10/286 (3%)
Query: 1 MRILVHSGFFA-------QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR + H+GFF Q++++ Y LT AS LL+K + L AP V+ V DP + ++H
Sbjct: 75 MRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQ 134
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
L W+ +D +LF + G W+ + + P++ F D M +DS++I + ++DC FEG
Sbjct: 135 LKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMI-NLALRDCNSGFEG 193
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
++S+VDV GG G A+ I FP++KC VFD P VV+NL GTN NL ++GG+MF+++P+A
Sbjct: 194 VESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTN-NLSYVGGDMFQSVPKA 252
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
+AVLLKWILHNW D + ++L+KCKEA+ S E GKVIII+M I + E T+L
Sbjct: 253 DAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKLLM 312
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+ M L GKERS ++WKKLF+ AGF YKI+P+ G SLIE YP
Sbjct: 313 DVNMACL-NGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
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Score = 267 bits (682), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 189/281 (67%), Gaps = 5/281 (1%)
Query: 1 MRILVHSGFFA--QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWL 58
MR L H+GFF ++++ Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLV 118
+D +LF G WD + P++ + F D M +DS+LI + ++DC VF+GL+S+V
Sbjct: 135 YEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI-NLALRDCDFVFDGLESIV 193
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLL 178
DV GGTG A+ I FP +KC VFD P VV+NL G+N NL ++GG+MF +IP A+AVLL
Sbjct: 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN-NLTYVGGDMFTSIPNADAVLL 252
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238
K+ILHNW D++ +++LKKCKEA+ + + GKV IIDM I+ + + + + +L D+ M
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA 312
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
L GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 313 CL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
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Score = 267 bits (682), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 189/281 (67%), Gaps = 5/281 (1%)
Query: 1 MRILVHSGFFA--QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWL 58
MR L H+GFF ++++ Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLV 118
+D +LF G WD + P++ + F D M +DS+LI + ++DC VF+GL+S+V
Sbjct: 135 YEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI-NLALRDCDFVFDGLESIV 193
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLL 178
DV GGTG A+ I FP +KC VFD P VV+NL G+N NL ++GG+MF +IP A+AVLL
Sbjct: 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN-NLTYVGGDMFTSIPNADAVLL 252
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238
K+ILHNW D++ +++LKKCKEA+ + + GKV IIDM I+ + + + + +L D+ M
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLLMDVNMA 312
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
L GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 313 CL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
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Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 188/281 (66%), Gaps = 5/281 (1%)
Query: 1 MRILVHSGFFA--QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWL 58
MR L H+GFF ++++ Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLV 118
+D +LF G WD + P++ + F D M +DS+LI + ++DC VF+GL+S+V
Sbjct: 135 YEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI-NLALRDCDFVFDGLESIV 193
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLL 178
DV GGTG A+ I FP +KC VFD P VV+NL G+N NL ++GG+MF +IP A+AVLL
Sbjct: 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN-NLTYVGGDMFTSIPNADAVLL 252
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238
K+ILHNW D++ +++LKKCKEA+ + + GKV IIDM I + + + + +L D+ M
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIKLLMDVNMA 312
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
L GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 313 CL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/291 (48%), Positives = 194/291 (66%), Gaps = 17/291 (5%)
Query: 1 MRILVHSGFFAQ--------QKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFH 52
+R+L H+GFFA+ +++ Y LTP+S+LL+ K+ LV L+ ++
Sbjct: 75 LRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSG---KSTCLSSLVKGALHPSSLD 131
Query: 53 CLGT---WLQND-DPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCK 108
G W D + +LFE A G+ WD + + S+F D M DS L + I++ K
Sbjct: 132 MWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLFK-LAIQENK 190
Query: 109 EVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE 168
VFEGL+SLVDVAGGTG +A+ I AFP IKCTVFD P VV NL G N+NL+F+GG+MF+
Sbjct: 191 HVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTG-NENLNFVGGDMFK 249
Query: 169 AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228
++P A+AVLLKW+LH+WNDE S+K+LK KEAI K + GKVIIID++I+ S D+ E
Sbjct: 250 SVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTE 309
Query: 229 TQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
QL +D++M+++F GKER+ +W+KL AGFS YKITP+ G +SLIE YP
Sbjct: 310 LQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1 | Back alignment and function description |
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Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 189/285 (66%), Gaps = 10/285 (3%)
Query: 1 MRILVHSGFFAQQKDDE-----YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLG 55
MR LV+S FF ++ + Y+LTPAS LLLK+ PL P V +V DP +T +H +
Sbjct: 77 MRALVNSNFFIEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHMS 136
Query: 56 TWLQND-DPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W ++ + FE A+G W+++A+EP F + M DS LIA + KD K V EG+
Sbjct: 137 EWFTHEKHATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTKDYKHVIEGI 196
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
++LVDV GG G MA+AI A P IKCTV DLPHVV L+ T DNL+++GG+MF++IP A+
Sbjct: 197 RTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLEST-DNLNYIGGDMFQSIPSAD 255
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD 234
A+LLK I+H+W+D E +K+LKKCK+A+ GGKVIIID+ + E +E QL FD
Sbjct: 256 AILLKSIIHDWDDVEGLKILKKCKDAVVM---GGKVIIIDVVVGVNHDIDEVLEDQLHFD 312
Query: 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+ M+ F KER++ +W+KL AGF YK+TP GVRSLIEAYP
Sbjct: 313 MAMMCYFNAKERTMSEWEKLIYDAGFKSYKLTPAFGVRSLIEAYP 357
|
Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | ||||||
| 225446491 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.996 | 0.778 | 0.603 | 2e-96 | |
| 147816431 | 357 | hypothetical protein VITISV_020020 [Viti | 0.996 | 0.778 | 0.603 | 1e-95 | |
| 330375623 | 367 | orcinol O-methyltransferase-like protein | 0.996 | 0.757 | 0.605 | 2e-93 | |
| 20514369 | 366 | orcinol O-methyltransferase [Rosa hybrid | 0.996 | 0.759 | 0.602 | 2e-93 | |
| 225446489 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.996 | 0.778 | 0.578 | 2e-93 | |
| 225446485 | 356 | PREDICTED: tabersonine 16-O-methyltransf | 0.989 | 0.775 | 0.587 | 7e-93 | |
| 359485251 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.989 | 0.773 | 0.587 | 9e-93 | |
| 225454044 | 358 | PREDICTED: tabersonine 16-O-methyltransf | 0.996 | 0.776 | 0.573 | 9e-92 | |
| 225446487 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.992 | 0.775 | 0.597 | 3e-91 | |
| 147826879 | 357 | hypothetical protein VITISV_021917 [Viti | 0.992 | 0.775 | 0.594 | 4e-90 |
| >gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 218/285 (76%), Gaps = 7/285 (2%)
Query: 1 MRILVHSGFFAQQKDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MRILV SGFFA+QK +E Y LT ASRLLL+D PL PF+ + DP+ T +H +
Sbjct: 74 MRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTKPWHYV 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W QNDDP+ F+TAHG+ WD EPK + F + M +D+ L+ ++IKDCK VFEGL
Sbjct: 134 SAWFQNDDPTPFDTAHGRTFWDYGGHEPKINNFFNEAMASDARLVTSVLIKDCKGVFEGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SLVDV GGTG +A+AIA AFP + CTVFDLPHVV L+G+ NL++LGG+MF+ IP A+
Sbjct: 194 NSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGSK-NLNYLGGDMFKGIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD 234
A+LLKWILH+WNDEE VK+L++C++AIPSK++GGKVIIIDM +ENQ D ESMETQL FD
Sbjct: 253 AILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESMETQLFFD 312
Query: 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+LM+ L G+ER+ +W+KLFL AGFS YKITP+LG+RSLIE YP
Sbjct: 313 MLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 216/285 (75%), Gaps = 7/285 (2%)
Query: 1 MRILVHSGFFAQQKDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MRILV SGFFA+QK +E Y LT ASRLLL+D PL PF+ + DP+ T +H +
Sbjct: 74 MRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTKPWHYV 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W QNDDP+ F+TAHG WD EPK + F + M +D+ L+ +IKDCK VFEGL
Sbjct: 134 SAWFQNDDPTPFDTAHGXTFWDYGGHEPKJNNFFNEAMASDARLVTSXLIKDCKGVFEGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SLVDV GGTG +A+AIA AFP + CTVFDLPHVV L+G+ NL++LGG+MF+ IP A+
Sbjct: 194 NSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGSK-NLNYLGGDMFKGIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD 234
A+LLKWILH+WNDEE VK+L++C++AIPSK++GGKVIIIDM +ENQ D ESMETQL FD
Sbjct: 253 AILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESMETQLFFD 312
Query: 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+LM+ L G+ER+ +W+KLFL AGFS YKITP+LG+RSLIE YP
Sbjct: 313 MLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330375623|gb|AEC13057.1| orcinol O-methyltransferase-like protein [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/284 (60%), Positives = 214/284 (75%), Gaps = 6/284 (2%)
Query: 1 MRILVHSGFFAQQK----DDE-YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLG 55
MRILVHSGFFA++K D+E Y LT AS+LLLKD PL PF+ + DP+ T ++ L
Sbjct: 85 MRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLS 144
Query: 56 TWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLK 115
TW QNDDP+ F+TAHG WD +P F D M +D+ L+ ++I DCK VFEGL+
Sbjct: 145 TWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLE 204
Query: 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANA 175
SLVDV GGTG +A+AIA AFP I+CTV DLPHVV +LQG+ NL + GG+MFEA+P A+
Sbjct: 205 SLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGSK-NLKYTGGDMFEAVPPADT 263
Query: 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI 235
VLLKWILH+WNDEE VK+LK+ +EAI SKD+ GKVIIIDM +ENQ D+ES+ETQL FD+
Sbjct: 264 VLLKWILHDWNDEECVKILKRSREAITSKDKNGKVIIIDMMMENQKGDEESIETQLFFDM 323
Query: 236 LMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
LM++L GKER+ +W KLF AGFS YKITP+LG+RSLIE YP
Sbjct: 324 LMMALVTGKERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 367
|
Source: Rosa chinensis Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20514369|gb|AAM23005.1|AF502434_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527924|emb|CAD29459.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748112|emb|CAH05078.1| orcinol O-methyltransferase 2 [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 216/284 (76%), Gaps = 6/284 (2%)
Query: 1 MRILVHSGFFAQQK----DDE-YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLG 55
MRILVHSGFFA++K D+E Y LT AS+LLLKD PL PF+ + DP+ TT ++ L
Sbjct: 84 MRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTTPWNYLS 143
Query: 56 TWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLK 115
TW QN+DP+ F+TAHG WD +P LF D M +D+ L+ ++I DCK VFEGL+
Sbjct: 144 TWFQNEDPTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASDARLVTSVIIDDCKGVFEGLE 203
Query: 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANA 175
SLVDV GGTG +A+AIA AFP I+CTV DLPHVV +LQG+ NL + GG+MFEA+P A+
Sbjct: 204 SLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGSK-NLKYTGGDMFEAVPPADT 262
Query: 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI 235
VLLKWILH+WNDEE +K+LK+ + AI SKD+ GKVIIIDM +ENQ D+ES+ETQL FD+
Sbjct: 263 VLLKWILHDWNDEECIKILKRSRVAITSKDKKGKVIIIDMMMENQKGDEESIETQLFFDM 322
Query: 236 LMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
LM++L RG+ER+ +W KLF AGFS YKITP+LG+RSLIE YP
Sbjct: 323 LMMALVRGQERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 366
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 213/285 (74%), Gaps = 7/285 (2%)
Query: 1 MRILVHSGFFAQQKDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MR+LV SGFF +++ E Y LT ASRLLLKD PL A PF+ + DP+ T + +
Sbjct: 74 MRLLVQSGFFTRKRVQESGQEEGYVLTHASRLLLKDDPLSARPFLLAMLDPVLITPWQYV 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W QNDDP+ F+TAHG+ WD EPK + F + M +D+ L+ ++IKDCK +F GL
Sbjct: 134 SAWFQNDDPTPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDARLVTSVLIKDCKGIFVGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SLVDV GGTG +ARAIA AFP + CTV DLPHVV L+G+ NL++L G+MFEAIP A+
Sbjct: 194 NSLVDVGGGTGTVARAIANAFPHLNCTVLDLPHVVAGLEGSK-NLNYLAGDMFEAIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD 234
A+LLKWILH+WN +E VK+LK+C++AIPSK++GGKVIIIDM +ENQ D ES+ETQL +D
Sbjct: 253 AILLKWILHDWNHDECVKILKRCRDAIPSKEKGGKVIIIDMMMENQKADDESIETQLFWD 312
Query: 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+LM+ + G+ER++ DW+KLF AGFS YKITPMLG+RSLIE YP
Sbjct: 313 MLMMIVLTGQERNIKDWEKLFFDAGFSGYKITPMLGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446485|ref|XP_002278106.1| PREDICTED: tabersonine 16-O-methyltransferase-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 346 bits (887), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 212/286 (74%), Gaps = 10/286 (3%)
Query: 1 MRILVHSGFFAQQK-------DDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR+LVHSGFFAQQK ++ Y LT AS+ LLKD P+ PF+ L DP+ T +H
Sbjct: 74 MRVLVHSGFFAQQKLLHNSEEEEGYSLTFASQFLLKDEPVSGVPFLLLQLDPILTAPWHF 133
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
LG W QN+DP+ F TAH K WD EPK +F + M++DS LIA ++++ KEVFEG
Sbjct: 134 LGDWFQNEDPTPFHTAHRKSFWDYAVHEPKLNDIFNETMVSDSRLIANMIVRQYKEVFEG 193
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L SLVDV GGTG M +AIA AFP +KC VFD PHVV NL+ +NL+ +GGN+FEAIP A
Sbjct: 194 LASLVDVGGGTGTMVKAIAKAFPQLKCIVFDQPHVVANLE-VGENLEIVGGNIFEAIPPA 252
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
+A+LLKWILH+W+DEE VK+LKKCK AIP+K GGKVIIIDM +E+ D +++ETQL
Sbjct: 253 DAILLKWILHDWSDEECVKILKKCKGAIPNK--GGKVIIIDMVVESNKGDNKAVETQLFI 310
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+LM+ + GKER+ +W+KLFLAAGF+HYKITP LG+RSLIE YP
Sbjct: 311 DMLMMVVVAGKERNEKEWEKLFLAAGFTHYKITPALGLRSLIEVYP 356
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485251|ref|XP_003633245.1| PREDICTED: tabersonine 16-O-methyltransferase-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 212/286 (74%), Gaps = 10/286 (3%)
Query: 1 MRILVHSGFFAQQK-------DDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR+LVHSGFFAQQK ++ Y LT AS+ LLKD P+ PF+ L DP+ T +H
Sbjct: 75 MRVLVHSGFFAQQKLLHNSEEEEGYSLTFASQFLLKDEPVSGVPFLLLQLDPILTAPWHF 134
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
LG W QN+DP+ F TAH K WD EPK +F + M++DS LIA ++++ KEVFEG
Sbjct: 135 LGDWFQNEDPTPFHTAHRKSFWDYAVHEPKLNDIFNETMVSDSRLIANMIVRQYKEVFEG 194
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L SLVDV GGTG M +AIA AFP +KC VFD PHVV NL+ +NL+ +GGN+FEAIP A
Sbjct: 195 LASLVDVGGGTGTMVKAIAKAFPQLKCIVFDQPHVVANLE-VGENLEIVGGNIFEAIPPA 253
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
+A+LLKWILH+W+DEE VK+LKKCK AIP+K GGKVIIIDM +E+ D +++ETQL
Sbjct: 254 DAILLKWILHDWSDEECVKILKKCKGAIPNK--GGKVIIIDMVVESNKGDNKAVETQLFI 311
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+LM+ + GKER+ +W+KLFLAAGF+HYKITP LG+RSLIE YP
Sbjct: 312 DMLMMVVVAGKERNEKEWEKLFLAAGFTHYKITPALGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454044|ref|XP_002262833.1| PREDICTED: tabersonine 16-O-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/286 (57%), Positives = 210/286 (73%), Gaps = 8/286 (2%)
Query: 1 MRILVHSGFFAQQK-------DDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR+LVHSGFF+QQ+ ++ Y LT ASR LLKD PL P L +P+ T +H
Sbjct: 74 MRLLVHSGFFSQQQVIHNNEQEEGYSLTSASRFLLKDEPLTGLPLSLLHLNPVLTAPWHF 133
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
L W +N DP+ F TAHGK WD A EP F LF + M +DS +IA ++I CKE F+G
Sbjct: 134 LSGWFRNGDPTPFYTAHGKPYWDYTAQEPDFNDLFNEAMASDSRIIASVLITKCKEQFKG 193
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L SLVDV GTG M +AIA AFP +KC VFD PHVV +LQG NL+ +GG+MFE IP A
Sbjct: 194 LFSLVDVGAGTGTMTKAIAKAFPHLKCIVFDQPHVVADLQG-GGNLEVVGGDMFETIPSA 252
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
NAV+LKWILHNW+DEE VK+LKKCKEAIP+KD+GGK++IIDM +EN D +++ETQL +
Sbjct: 253 NAVILKWILHNWSDEECVKILKKCKEAIPTKDKGGKLMIIDMVMENNKGDDQAVETQLFW 312
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+LM+++ GK+R+ ++WKKLF+ AGF+HYKI+ +LG RSLIE YP
Sbjct: 313 DMLMMTVLTGKQRNENEWKKLFVTAGFTHYKISAVLGFRSLIEVYP 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446487|ref|XP_002278149.1| PREDICTED: tabersonine 16-O-methyltransferase isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 209/286 (73%), Gaps = 9/286 (3%)
Query: 1 MRILVHSGFFAQQKDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MR+LVHSGFFAQQ+ D Y LT ASR LLKD P AP + + DP T H L
Sbjct: 74 MRVLVHSGFFAQQQADHNEQEQLYSLTYASRFLLKDEPTSGAPLLLVQVDPHLTNPCHFL 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W +N DP+ F TA+GK WD A EPKF + F + M +DS+LIA +V+ +CKEVF GL
Sbjct: 134 SDWFRNSDPTPFVTAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SL+DV GGTG MA+ IA AFP +KCTVFD PHVV NLQG +NL+F+GG++FEAIP A+
Sbjct: 194 SSLIDVGGGTGTMAKVIAKAFPHLKCTVFDQPHVVANLQG-GENLEFVGGDIFEAIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAI-PSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
A+LLK ILHNW+D E VK+LKKCKEAI P KD+GGKVIIID+ +EN D E++E QL +
Sbjct: 253 AILLKSILHNWSDGECVKILKKCKEAIHPRKDKGGKVIIIDIVMENNKGD-EAVEAQLFY 311
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
DILM+ + GKER+ +W+ LFLAAGF+HYKIT LG RSLIE YP
Sbjct: 312 DILMMVVVAGKERNEREWENLFLAAGFAHYKITSTLGPRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826879|emb|CAN73269.1| hypothetical protein VITISV_021917 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/286 (59%), Positives = 208/286 (72%), Gaps = 9/286 (3%)
Query: 1 MRILVHSGFFAQQKDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCL 54
MR+LV SGFFAQQ+ D Y LT ASR LLKD P AP + + DP T H L
Sbjct: 74 MRVLVXSGFFAQQQADHNEQEQLYSLTYASRFLLKDEPTSGAPLLLVQVDPHLTNPCHFL 133
Query: 55 GTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL 114
W +N DP+ F TA+GK WD A EPKF + F + M +DS+LIA +V+ +CKEVF GL
Sbjct: 134 SDWFRNSDPTPFVTAYGKPFWDYAAHEPKFNNFFNEAMASDSQLIASVVVGECKEVFRGL 193
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQAN 174
SL+DV GGTG MA+ IA AFP +KCTVFD PHVV NLQG +NL+F+GG++FEAIP A+
Sbjct: 194 SSLIDVGGGTGTMAKVIAKAFPHLKCTVFDQPHVVANLQG-GENLEFVGGDIFEAIPPAD 252
Query: 175 AVLLKWILHNWNDEESVKLLKKCKEAI-PSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
A+LLK ILHNW+D E VK+LKKCKEAI P KD+GGKVIIID+ +EN D E++E QL +
Sbjct: 253 AILLKSILHNWSDGECVKILKKCKEAIHPRKDKGGKVIIIDVVMENNKGD-EAVEAQLFY 311
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
DILM+ + GKER+ +W+ LFLAAGF+HYKIT LG RSLIE YP
Sbjct: 312 DILMMVVVAGKERNEREWENLFLAAGFAHYKITSTLGPRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 279 | ||||||
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.992 | 0.795 | 0.505 | 2.9e-71 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.996 | 0.759 | 0.460 | 1e-68 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.989 | 0.777 | 0.501 | 1.3e-68 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.985 | 0.770 | 0.466 | 2.4e-67 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.992 | 0.758 | 0.458 | 1.8e-64 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.992 | 0.754 | 0.471 | 9.7e-64 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.949 | 0.708 | 0.436 | 4.6e-57 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.964 | 0.704 | 0.339 | 2.6e-38 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.734 | 0.630 | 0.357 | 3.9e-35 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.913 | 0.702 | 0.310 | 7.9e-30 |
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 142/281 (50%), Positives = 199/281 (70%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
MRILV +G+F++++ + Y LTP +RLLLK+ PL + V V A++ + W QN
Sbjct: 70 MRILVAAGYFSEEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAMSEWFQN 129
Query: 61 DDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDV 120
+D + FETAHGK WD A++ K+ F +M DS L++ ++I + +FEGL SLVDV
Sbjct: 130 EDLTAFETAHGKNFWDFGAED-KYGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDV 188
Query: 121 AGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKW 180
GGTG +A+AIA +FPD+KCTVFDLPHVV NL+ T +NL+F+GG+MFE IP ANA+LLKW
Sbjct: 189 GGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSANAILLKW 247
Query: 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI--ENQSQDKESMETQLCFDILMV 238
ILH+W DEE VK+LK C++AIP K++GGKVI+I+ + + +++E+++ Q+ DI M+
Sbjct: 248 ILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISSDIDMM 307
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
F KER+ ++W LF AGFS YKI PM+ RS IE YP
Sbjct: 308 VFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 135/293 (46%), Positives = 200/293 (68%)
Query: 1 MRILVHSGFF-------------AQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLY 47
MRILVHSGFF ++++D Y LTPASRLLL+ PL APF ++DP+Y
Sbjct: 75 MRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSDPVY 134
Query: 48 TTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDC 107
T +H L W +ND + F+T +G + + + LF + M D+ + I+ +C
Sbjct: 135 TETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILTTEC 194
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
+E+F+GL+S+VDV GGTG A+ IA AFP ++CTV DLP+VV L+G+ +NL F+ G+MF
Sbjct: 195 REIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSGDMF 253
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIP-SKDEGGKVIIIDMAIENQSQDKES 226
+ IP A+A+ +K+ILH+WNDEE VK+LKKCKEAI S + K+I++++ +E++ + E+
Sbjct: 254 DFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKETHEA 313
Query: 227 METQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
ET+L FD+ M+++ GKERS +W KLF AGF++YKIT +LG+RS+IE +P
Sbjct: 314 TETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 144/287 (50%), Positives = 192/287 (66%)
Query: 1 MRILVHSGFFAQQK-DDE----YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLG 55
MR+L +GF ++++ D E Y LTP+SR+LLK PL V +ADP+ A+ L
Sbjct: 72 MRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESLS 131
Query: 56 TWLQNDDPS--LFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
W QN+D S FETAHGK W ++ + F + M +DS+LI+ ++I + K +FEG
Sbjct: 132 DWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEG 191
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L SLVD+ GGTG +A+AIA FP +KCTVFDLPHVV NL+ + +N++F+ G+MFE IP A
Sbjct: 192 LASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLE-SKENVEFVAGDMFEKIPSA 250
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
NA+ LKWILH+WNDE+ VK+LK CK+AIP+K GGKVIIIDM + + +D ++TQ
Sbjct: 251 NAIFLKWILHDWNDEDCVKILKSCKKAIPAK--GGKVIIIDMVMYSDKKDDHLVKTQTSM 308
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG-VRSLIEAYP 279
D+ M+ F KER +W LF AGFS YKI P L RSLIE YP
Sbjct: 309 DMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 134/287 (46%), Positives = 193/287 (67%)
Query: 1 MRILVHSGFFA-------QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR + H+GFF Q++++ Y LT AS LL+K + L AP V+ V DP + ++H
Sbjct: 75 MRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQ 134
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
L W+ +D +LF + G W+ + + P++ F D M +DS++I + ++DC FEG
Sbjct: 135 LKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMI-NLALRDCNSGFEG 193
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
++S+VDV GG G A+ I FP++KC VFD P VV+NL GTN NL ++GG+MF+++P+A
Sbjct: 194 VESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTN-NLSYVGGDMFQSVPKA 252
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME-TQLC 232
+AVLLKWILHNW D + ++L+KCKEA+ S E GKVIII+M I N++QD+ + T+L
Sbjct: 253 DAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVI-NENQDEHEITGTKLL 311
Query: 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+ M L GKERS ++WKKLF+ AGF YKI+P+ G SLIE YP
Sbjct: 312 MDVNMACL-NGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 134/292 (45%), Positives = 192/292 (65%)
Query: 1 MRILVHSGFFAQ---------QKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAF 51
+R+L H+GFFA+ +++ Y LTP S+LL+K AP V P +
Sbjct: 76 LRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSLDMW 135
Query: 52 HCLGTWL--QNDDPSLFETAHGKKVWDRVADEPKFK--SLFYDLMITDSELIAGIVIKDC 107
W N++ +LFE+A G+ W+ + E + S+F + M DS + + +K+C
Sbjct: 136 RSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMFK-LALKEC 194
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
K VFEGL SLVDVAGG G + + I AFP +KCTVFD P VV NL G ++NL+F+GG+MF
Sbjct: 195 KHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTG-DENLNFVGGDMF 253
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
+++P A+AVLLKW+LH+WNDE S+K+LK CKEAI + + GKVIIID++I+ S D+E
Sbjct: 254 KSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELT 313
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E +L +D++M+++F GKER +W+KL AGFS YKITP+ G +SLIE +P
Sbjct: 314 ELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 139/295 (47%), Positives = 190/295 (64%)
Query: 1 MRILVHSGFFAQQ-------KDDE------YFLTPASRLLLKDTPLKAAPFVDLVADPLY 47
+R+L H+GFFA+ KD E Y LTP S+LL+K P A V P
Sbjct: 75 LRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALHPSS 134
Query: 48 TTAFHCLGTWLQND-DPSLFETAHGKKVWDRVA--DEPKFKSLFYDLMITDSELIAGIVI 104
+ W + D + +LFE+A G+ WD + E S+F + M DS++ + +
Sbjct: 135 LDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFK-LAL 193
Query: 105 KDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGG 164
K+C+ VFEGL+SLVDV GGTG + + I FP +KCTVFD P VV NL G N+NL F+GG
Sbjct: 194 KECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSG-NENLKFVGG 252
Query: 165 NMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK 224
+MF++IP A+AVLLKW+LH+WNDE S+K+LK KEAI K + GKVIIID++I+ S D+
Sbjct: 253 DMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASGDR 312
Query: 225 ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E E QL +D++M+++F GKER +W+KL AGFS YKITP+ G +SLIE +P
Sbjct: 313 ELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 121/277 (43%), Positives = 174/277 (62%)
Query: 14 KDDEYFLTPASRLLLKDTPLKAA---PFVDLVADPLYTTAFHC-LGTWLQNDD----PSL 65
++ Y LT AS LL+ A P ++ V P + L W ++D+ P +
Sbjct: 99 REPVYKLTTASSLLVSSESSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDEDEQAPGM 158
Query: 66 --FETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGG 123
F +G +W+ + +LF + M DS + I++K+ EVF G+ SLVDVAGG
Sbjct: 159 CPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGG 218
Query: 124 TGIMARAIATAFPDIKCTVFDLPHVVDNLQGTN-DNLDFLGGNMFEAIPQANAVLLKWIL 182
G AIA AFP +KCTV DLPHVV ++ N+ F+GG+MFE+IP AN VLLKWIL
Sbjct: 219 VGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWIL 278
Query: 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR 242
H+W+++E +K+LK CK+AIPS+D GGK+IIID+ + + S D + +ETQ+ +D+ ++ +
Sbjct: 279 HDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLMKI-G 337
Query: 243 GKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
G ER +WKK+FL AGF YKI P+LG+RS+IE YP
Sbjct: 338 GVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 103/303 (33%), Positives = 159/303 (52%)
Query: 1 MRILVHSGFFAQ--QKDD---EYFLTPASRLLL--KDTPLKAAPFVDLVADPLYTTAFHC 53
MR LVH G F + KD Y TP SR L+ + APFV L+ T
Sbjct: 87 MRFLVHQGIFKEIPTKDGLATGYVNTPLSRRLMITRRDGKSLAPFV------LFETTPEM 140
Query: 54 LGTWLQ----------NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIV 103
L WL+ P F+ HGK VW D P + + M D+ + V
Sbjct: 141 LAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRV 200
Query: 104 IKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLG 163
C +F+G+ ++VDV GGTG + FP IK FDLPHV++ + D ++ +
Sbjct: 201 AGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAE-VLDGVENVE 259
Query: 164 GNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI-ENQS- 221
G+MF++IP +A+ +KW+LH+W D++ +K+LK CKEA+P GKV+I++ I EN+
Sbjct: 260 GDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNI--GKVLIVESVIGENKKT 317
Query: 222 -----QDKESMETQLCFDILMVS-LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLI 275
+D++ +L D++M++ GKER++ +W + AGF+ Y++ + V+SLI
Sbjct: 318 MIVDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLI 377
Query: 276 EAY 278
AY
Sbjct: 378 IAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 78/218 (35%), Positives = 127/218 (58%)
Query: 70 HGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMAR 129
HGK +W D L + M D+ + V C+ +F+G+ ++VDV GGTG
Sbjct: 110 HGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMG 169
Query: 130 AIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEE 189
+ FP IK FDLPHV++ Q D ++ + G+MF++IP ++AV++KW+LH+W D++
Sbjct: 170 ILVKEFPWIKGFNFDLPHVIEVAQ-VLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKD 228
Query: 190 SVKLLKKCKEAI-PSKDEGGKVIIIDMAI---EN----QSQDKESMETQLCFD-ILMVSL 240
+K+LK CKEA+ P+ GKV+I++ I +N + +D + +L D ++MV
Sbjct: 229 CIKILKNCKEAVLPNI---GKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHT 285
Query: 241 FRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278
GKER++ +W + AGF+ Y++ V+SLI AY
Sbjct: 286 STGKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 83/267 (31%), Positives = 140/267 (52%)
Query: 18 YFLTPASRLLLKDTP-LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWD 76
Y L + L+KD AP+V + L +Q S +E A+ +++
Sbjct: 103 YGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALIFE 162
Query: 77 RVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP 136
+ K +F + M + ++ ++++ FEG+ VDV G G I + +P
Sbjct: 163 YMKKNENLKKIFNESMTNHTSIVMKKILENYIG-FEGVSDFVDVGGSLGSNLAQILSKYP 221
Query: 137 DIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKK 196
IK FDLPH+V + ++ +GG+MF+ IP+ +L+KWILH+WNDE+ V++LK
Sbjct: 222 HIKGINFDLPHIVKEAPQIH-GVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKN 280
Query: 197 CKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDILMVSLFRG-KERSVDDWKKL 254
CK+A+P E G++I+I+M + + + + + + L D+ M+SL G KER+ +++ L
Sbjct: 281 CKKALP---ETGRIIVIEMIVPREVSETDLATKNSLSADLTMMSLTSGGKERTKKEFEDL 337
Query: 255 FLAAGFSHYKITPMLGVRS--LIEAYP 279
AGF KI + G S +IE YP
Sbjct: 338 AKEAGFKLPKI--IYGAYSYWIIELYP 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 279 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-78 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-16 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.002 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.004 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 1e-78
Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 8/244 (3%)
Query: 14 KDDEYFLTPASRLLLKDTPL-KAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGK 72
++Y LTPAS+LL+K AP + + ADP ++ L ++ P FE A G
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFGM 61
Query: 73 KVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIA 132
++ + +P+F +F M S L+ I + F GL SLVDV GGTG +A AI
Sbjct: 62 PFFEYLGADPEFNRVFNRAMAAHSRLV-MKKILETAFDFSGLSSLVDVGGGTGALAAAIV 120
Query: 133 TAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192
A+P IK VFDLPHV+ + D ++F+GG+ FE++P+A+A+LLKW+LH+W+DE+ VK
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSA-DRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVK 179
Query: 193 LLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252
+LK+C EA+P GGKVI+++M + D E L D+ M+ L GKER+ +W+
Sbjct: 180 ILKRCYEALP---PGGKVIVVEMVLPEDPDDDLETEVLL-LDLNMLVLNGGKERTEKEWR 235
Query: 253 KLFL 256
KL
Sbjct: 236 KLLS 239
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 2e-16
Identities = 55/265 (20%), Positives = 128/265 (48%), Gaps = 35/265 (13%)
Query: 13 QKDDEYFLTPASRLLLKDTP----LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFET 68
+D ++ LT + + TP L P +A + L +
Sbjct: 55 LEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF------------LADDFYMGLSQA 102
Query: 69 AHGKKVWDRVADEP---KFKSLFYD-LMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGT 124
G+K + P + +L+++ + ++++ +++++ K +G+K ++DV GG
Sbjct: 103 VRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGI 160
Query: 125 GIMARAIATAFPDIKCTVFDLPHVVDNL------QGTNDNLDFLGGNMF-EAIPQANAVL 177
G ++ A+ FP++ T+ +LP +D + +G D + + +++ E+ P+A+AVL
Sbjct: 161 GDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVL 220
Query: 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ-DKESMETQLCFDIL 236
IL++ N++ S + KK +A+ S GG+++I+DM I++ + + + + +
Sbjct: 221 FCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPNFDYLSHYILGAGM 277
Query: 237 MVSLFRGKERSVDDWKKLFLAAGFS 261
S+ KE++ +K++ + G+
Sbjct: 278 PFSVLGFKEQAR--YKEILESLGYK 300
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ-----GTNDNLDFLGGNM-- 166
++D+ GTG +A +A FP + T DL P +++ + + F+ G+
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 167 -FEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212
+ + +AV + + ++LL + GG++++
Sbjct: 63 ALDLLEGFDAVFIGGGGGDL-----LELLDALASLLKP---GGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIK------DCKEVFEGLKSLVDVAGGTG 125
+KV+D+VA YDLM + + G+ + G K L DVA GTG
Sbjct: 14 QKVFDKVAK-------KYDLM--NDLMSFGLHRLWRRALISLLGIKPGDKVL-DVACGTG 63
Query: 126 IMARAIATAFPDIKCTVFD 144
MA +A + + D
Sbjct: 64 DMALLLAKSVGTGEVVGLD 82
|
Length = 238 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.77 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.76 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.72 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.71 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.68 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.67 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.67 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.66 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.66 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.63 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.62 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.6 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.58 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.57 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.56 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.55 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.52 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.52 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.51 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.48 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.47 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.47 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.47 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.46 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.46 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.45 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.43 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.43 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.42 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.41 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.4 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.38 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.37 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.34 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.34 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.34 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.33 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.33 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.3 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.3 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.3 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.3 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.25 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.21 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.21 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.21 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.21 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.2 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.17 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.16 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.16 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.15 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.14 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.13 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.13 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.13 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.13 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.12 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.12 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.11 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.1 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.1 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.1 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.07 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.06 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.06 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.06 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.04 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.03 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.02 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.98 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.98 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.98 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.96 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.95 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.91 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.88 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.86 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.85 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.85 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.83 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.81 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.8 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.78 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.76 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.76 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.76 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.74 | |
| PLN02366 | 308 | spermidine synthase | 98.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.73 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.73 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.72 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.69 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.69 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.67 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.67 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.66 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.65 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.65 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.61 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.61 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.57 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.55 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.53 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.52 | |
| PLN02476 | 278 | O-methyltransferase | 98.48 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.46 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.46 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.44 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.43 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.43 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.41 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.4 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.39 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.38 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.37 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.37 | |
| PLN02823 | 336 | spermine synthase | 98.32 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.32 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.3 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.3 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.3 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.29 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.28 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.24 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.2 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.19 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.17 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.14 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.13 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.12 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.1 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.08 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.07 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.06 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.06 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.04 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.04 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.02 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.98 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.97 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.95 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.9 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.88 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.87 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.79 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.7 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.67 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.66 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.65 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.57 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.51 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.49 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.48 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.47 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.44 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.42 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.41 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.4 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.39 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.38 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.36 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.34 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.32 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.31 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.3 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.29 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.27 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.26 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.2 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.2 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.16 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.16 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.13 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.09 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.08 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.01 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.0 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.95 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.93 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.87 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.84 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.82 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.71 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.62 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.57 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.56 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.55 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.53 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.53 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.31 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.21 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.12 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.01 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.0 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.84 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.71 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.64 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.58 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.54 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.51 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.35 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.29 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.22 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.2 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.9 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.78 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.7 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.59 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.08 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 93.86 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.65 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.36 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.3 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 93.25 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.91 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.89 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.88 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.81 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 92.77 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.43 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.36 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 92.32 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.19 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 90.71 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 90.56 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 90.48 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 90.47 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.39 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.15 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.93 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.37 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 89.07 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 88.86 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.74 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.16 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 88.15 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 87.99 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.5 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 86.79 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 86.77 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.67 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 85.84 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.74 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.63 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 83.33 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 80.83 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 80.46 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 80.35 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=306.84 Aligned_cols=234 Identities=35% Similarity=0.660 Sum_probs=203.3
Q ss_pred CeEecChhcchhhcCCC-CChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhh
Q 023625 16 DEYFLTPASRLLLKDTP-LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMIT 94 (279)
Q Consensus 16 ~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 94 (279)
++|+||++|+.|+.+++ .++..++.+...+..+.+|.+|.+++++|+ ++|+..+|.++|+++.++|+....|..+|..
T Consensus 4 ~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 4 DRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp EEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 49999999995555444 678888877677889999999999999998 8999999999999999999999999999999
Q ss_pred cchhhH-HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCcc
Q 023625 95 DSELIA-GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~ 173 (279)
.+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++|+|++++.+++ .+||++++||+++++|.+
T Consensus 83 ~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSSE
T ss_pred hhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhccc
Confidence 888777 66777777 77889999999999999999999999999999999999999988 699999999999888889
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCC--cEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEG--GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
|+|+++++||+|+|+++.+||++++++|+ || |+|+|+|.++++....+........+|++|++.++|++||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~---pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALK---PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSE---ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhC---CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999999999999999999999999 78 99999999999987774322222589999999999999999999
Q ss_pred HHHHH
Q 023625 252 KKLFL 256 (279)
Q Consensus 252 ~~ll~ 256 (279)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=274.89 Aligned_cols=274 Identities=27% Similarity=0.487 Sum_probs=241.3
Q ss_pred CccccccCceeecCCC--eEecChhcchhh-cCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhh
Q 023625 1 MRILVHSGFFAQQKDD--EYFLTPASRLLL-KDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDR 77 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~--~y~~t~~s~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~ 77 (279)
||.|++++++++...+ .|+++|.++++. .++..|+..++....+...++.|..+.++++.++ .+|..++|...++|
T Consensus 64 lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~ 142 (342)
T KOG3178|consen 64 LRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGY 142 (342)
T ss_pred HHHHHHhhhceeeeecceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhh
Confidence 6889999999998864 699999998554 4445789999888888899999999999999988 68888899888999
Q ss_pred hhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCC
Q 023625 78 VADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTND 157 (279)
Q Consensus 78 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 157 (279)
...++.....|+++|...+....+.+++.+.. |++....||||||.|..+..++.+||+++++.+|+|.+++.+....+
T Consensus 143 ~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~ 221 (342)
T KOG3178|consen 143 GGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAP 221 (342)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcC
Confidence 99998888999999999998888888888874 88899999999999999999999999999999999999999887646
Q ss_pred CeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hhhhhhhcchh
Q 023625 158 NLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDIL 236 (279)
Q Consensus 158 ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~~ 236 (279)
.|+.+.||+|.+.|..|+||+.++||||+|++|+++|+||+++|+ |||+|++.|.+.++...... ........|+.
T Consensus 222 gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~---~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l 298 (342)
T KOG3178|consen 222 GVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLP---PGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL 298 (342)
T ss_pred CcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCC---CCCEEEEEeccCCCCCCccccccceeehhHHH
Confidence 699999999999999999999999999999999999999999999 79999999999886222111 11122367888
Q ss_pred hhhhcC-CeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 237 MVSLFR-GKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 237 ~~~~~~-~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
|+.... |++|+.+||+.++.++||.+.++.-.+...++|+++|
T Consensus 299 m~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 299 MLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 888764 9999999999999999999999999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=237.14 Aligned_cols=249 Identities=18% Similarity=0.344 Sum_probs=175.9
Q ss_pred CccccccCceeecCCCeEecChhcc-hhhcCCCC---ChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASR-LLLKDTPL---KAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWD 76 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~-~L~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~ 76 (279)
||+|+++|+|++.+ ++|+||+.++ +|.++++. ++..+..+.. ......|.+|.+++|++. +|... ++
T Consensus 44 L~~L~~lgll~~~~-~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~~--~~~~~-----~~ 114 (306)
T TIGR02716 44 LETLRQMRVINLED-GKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQK--NFKGQ-----VP 114 (306)
T ss_pred HHHHHhCCCeEecC-CcEecchhHHhhccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcCCc--ccccc-----cC
Confidence 68999999999987 5999999998 55444432 1123333321 223467899999998542 33321 12
Q ss_pred hhhcCchHHHHHHHHhh-hcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-
Q 023625 77 RVADEPKFKSLFYDLMI-TDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG- 154 (279)
Q Consensus 77 ~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~- 154 (279)
+....+.. ..|...|. .......+.+++.++ +.+..+|||||||+|.+++.+++++|+++++++|+|.+++.+++
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~ 191 (306)
T TIGR02716 115 YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNEN 191 (306)
T ss_pred CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHH
Confidence 21222222 23444444 333444555666665 67788999999999999999999999999999999999887763
Q ss_pred -----CCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-
Q 023625 155 -----TNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM- 227 (279)
Q Consensus 155 -----~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~- 227 (279)
..+|++++.+|+++ +.|++|+|++++++|+|+++++.++|++++++|+ |||+++|.|.+.++.... ...
T Consensus 192 ~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~---pgG~l~i~d~~~~~~~~~-~~~~ 267 (306)
T TIGR02716 192 AAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVIDDPENP-NFDY 267 (306)
T ss_pred HHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCCc-hhhH
Confidence 35799999999997 6777999999999999999999999999999999 799999999988765422 110
Q ss_pred hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 228 ~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
.........|.... ...++.+||.++|+++||+.+++.
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 268 LSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 00111111111111 123357999999999999988654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-19 Score=146.02 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=115.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 467799999999999999999974 7899999999 999988864 13579999999987 6667999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh------------------cCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL------------------FRG 243 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~------------------~~~ 243 (279)
+|++++++..++|++++++|+ |||.+++.|.+.++.....+ ....+.+... ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lk---pgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLN---PNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcC---CCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 999998888999999999999 79999999987655432211 0111111000 012
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...+.+++.+++++|||+.+++...
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3459999999999999997765433
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=135.94 Aligned_cols=159 Identities=20% Similarity=0.360 Sum_probs=120.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
.++.+|||||||||..+..+++..+..+++++|. +.+++.+++. ...++|+.+|..+ |+| .||+|.++..|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3688999999999999999999999999999999 9999998852 1239999999999 887 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh-hhhhcC-----------------Ce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL-MVSLFR-----------------GK 244 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~-----------------~~ 244 (279)
|+++|.+ +.|++++|+|| |||+++++|...+........ ...+... .+-..+ -.
T Consensus 130 rnv~d~~--~aL~E~~RVlK---pgG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~ 201 (238)
T COG2226 130 RNVTDID--KALKEMYRVLK---PGGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIGKLVAKDAEAYEYLAESIRR 201 (238)
T ss_pred hcCCCHH--HHHHHHHHhhc---CCeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhceeeecChHHHHHHHHHHHh
Confidence 9999764 88999999999 799999999887765332110 0001111 110111 12
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
.-+.+++.++++++||+.+...+.. |...+...+
T Consensus 202 ~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 202 FPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred CCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 2388999999999999988865554 444444443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=138.75 Aligned_cols=156 Identities=12% Similarity=0.236 Sum_probs=118.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~ 173 (279)
..+++.+. +.+..+|||||||+|..+..+++.+ .++++++|+ +.+++.+++. .++++++.+|+.+ +.+ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 34555554 6778899999999999999998875 679999999 8888877742 3589999999987 555 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|+|++..++++++.++..++|++++++|+ |||++++.+.......... . .... ..........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~Lk---PGG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLK---PNGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcC---CCcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHHH
Confidence 99999998888887778899999999999 7999999988665432111 0 0000 00001122348899999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
+++++||+.++..+..
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887764
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=137.69 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=118.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC--------CCCeEEeeCCCCC-CCC--ccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT--------NDNLDFLGGNMFE-AIP--QANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------~~ri~~~~~d~~~-~~~--~~D~v~ 177 (279)
..+..+|||||||+|.++..++++. |..+++++|+ +.+++.|++. .++++++.+|..+ |.+ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 6779999999 8999887631 2479999999987 665 499999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--h-hhcC------------
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--V-SLFR------------ 242 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~-~~~~------------ 242 (279)
+..++|++++. .++|++++++|+ |||+++++|...+......+. ...+....+ . ...+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLk---pGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLK---PGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcC---cCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999998865 578999999999 799999999875543211110 000111000 0 0000
Q ss_pred CeeCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 243 GKERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 243 ~~~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
....+.+|+.++++++||+.++..... +...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 224599999999999999999888775 455665554
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=137.67 Aligned_cols=150 Identities=19% Similarity=0.291 Sum_probs=113.2
Q ss_pred CCCCEEEEecCCccHHHHHHHH--HCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIAT--AFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~v 181 (279)
.+..+|||||||+|..+..+++ .+|+.+++++|. +.+++.|++ ...+++++.+|+.+ +.+.+|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4678999999999999999988 468999999999 999998874 23589999999987 6667999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch------hh------hhhc-C-CeeCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI------LM------VSLF-R-GKERS 247 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~------~~------~~~~-~-~~~r~ 247 (279)
+|++++++...++++++++|+ |||.+++.|.+..+.....+.. ...+.+. .. .... + -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lk---pGG~l~l~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLN---PGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcC---CCCEEEEEEecCCCcchhHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 999998888899999999999 7999999997765543221110 0001000 00 0000 0 11238
Q ss_pred HHHHHHHHHHCCCceeEE
Q 023625 248 VDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~ 265 (279)
+++..++|++|||+.++.
T Consensus 211 ~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 211 VETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHcCchhHHH
Confidence 899999999999987654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=142.73 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=81.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..++.+|||||||||.++..++++. |+.+++++|+ +.+++.|++ ...+|+++.+|..+ |++ .||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999875 6789999999 999999874 13589999999988 776 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh--h--hcC------------Ce
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV--S--LFR------------GK 244 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~--~~~------------~~ 244 (279)
.+|+++|. .+.|++++++|| |||+++|+|...+....... ....++...+- . ..+ ..
T Consensus 125 glrn~~d~--~~~l~E~~RVLk---PGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLK---PGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEE---EEEEEEEEEEEB-SSHHHHH--HHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcC---CCeEEEEeeccCCCCchhhc--eeeeeeccccccccccccccccccccccccccc
Confidence 99999885 478999999999 79999999998776421100 00011110000 0 000 11
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
..+.+++.++++++||+.++..++. |..++..++
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccC
Confidence 2278999999999999998887764 555665554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-17 Score=134.17 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=118.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++ ..++++++.+|..+ +.+ .+|+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 4567899999999999999999986 6789999999 888877763 12589999999877 544 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch----------------hhhhhcCCe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI----------------LMVSLFRGK 244 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~----------------~~~~~~~~~ 244 (279)
++|++++. .++|+++.++|+ |||++++.+...+....... ....++.. ..+......
T Consensus 123 ~l~~~~~~--~~~l~~~~~~Lk---~gG~l~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVVK---PGGKVVCLETSQPTIPGFKQ--LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred ccccCCCH--HHHHHHHHHHcC---cCeEEEEEECCCCCChHHHH--HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 99988765 578999999999 79999988865433211000 00000000 000000112
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
..+.++++++++++||+++++.... +..+++.++|
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 3478999999999999999998886 7778888875
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=131.16 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=108.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++. +++++.+|+.+. .+.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhhCCCCCCceEEE
Confidence 34555554 45678999999999999999999999999999999 8999988763 688999998762 23699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh----hhhcch-h-hhhhcCCeeCCHHHH
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET----QLCFDI-L-MVSLFRGKERSVDDW 251 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~----~~~~d~-~-~~~~~~~~~r~~~e~ 251 (279)
+..++|++++. .++|++++++|+ |||++++....... ......... ..+... . +....+....+.+++
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELA---PGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCC---CCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999988765 578999999999 79998886321101 000000000 001000 0 000011234589999
Q ss_pred HHHHHHCCCceeEE
Q 023625 252 KKLFLAAGFSHYKI 265 (279)
Q Consensus 252 ~~ll~~aGf~~~~~ 265 (279)
.++|+++||++...
T Consensus 169 ~~~l~~aGf~v~~~ 182 (255)
T PRK14103 169 AELLTDAGCKVDAW 182 (255)
T ss_pred HHHHHhCCCeEEEE
Confidence 99999999985433
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=135.05 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999999 888876653 24689999999987 554 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc-hhh-hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK-ESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
+|++++. .+++++++++|+ |||++++.+.......... ... .....++........-...+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLk---pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAA---PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcC---CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999875 588999999999 7999999886543321110 000 00000110000000112247899999999999
Q ss_pred CceeEEEecC
Q 023625 260 FSHYKITPML 269 (279)
Q Consensus 260 f~~~~~~~~~ 269 (279)
|..+++.+..
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=134.56 Aligned_cols=141 Identities=21% Similarity=0.330 Sum_probs=110.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC--ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 185 (279)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 8888888753 3578999999887 544 49999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++.+ .+|++++++|+ |||++++++...++.. ......+..+ ...+.+|+.++++++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLk---PGG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLK---IGGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcC---CCcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8865 68999999999 7999998876543210 0011112111 1247899999999999999998
Q ss_pred EecC
Q 023625 266 TPML 269 (279)
Q Consensus 266 ~~~~ 269 (279)
.++.
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=138.80 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=114.7
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D 174 (279)
+++.+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.|+. ...+++|+.+|+.+ +.+ .||
T Consensus 258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 455444 4567899999999999999999876 779999999 888887753 34589999999987 554 499
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..+++++++. .++|++++++|+ |||++++.+.......... . .... ....+....+.+++.++
T Consensus 335 ~I~s~~~l~h~~d~--~~~l~~~~r~Lk---pgG~l~i~~~~~~~~~~~~---~---~~~~--~~~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 335 VIYSRDTILHIQDK--PALFRSFFKWLK---PGGKVLISDYCRSPGTPSP---E---FAEY--IKQRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEECCcccccCCH--HHHHHHHHHHcC---CCeEEEEEEeccCCCCCcH---H---HHHH--HHhcCCCCCCHHHHHHH
Confidence 99999999988875 488999999999 7999999987665432221 1 1011 11123456689999999
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
++++||+++++.+.
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=114.13 Aligned_cols=99 Identities=22% Similarity=0.443 Sum_probs=84.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCC-CC-C-CCccceeeehh-h
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNM-FE-A-IPQANAVLLKW-I 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~-~~-~-~~~~D~v~~~~-v 181 (279)
+..+|||||||+|.++..+++.+|..+++++|+ |.+++.+++ ..++++++.+|+ .. + .+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999999 889988774 358999999999 33 2 33699999999 6
Q ss_pred hccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWND-EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+|++.+ ++..++|+++++.|+ |||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~---pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLK---PGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcC---CCcEEEEEE
Confidence 664443 678899999999999 799998865
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=124.98 Aligned_cols=137 Identities=14% Similarity=0.228 Sum_probs=107.4
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
++|||||||+|..+..+++.+|+++++++|+ +.+++.++. ..++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777663 35689999999976 444 59999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++. ..+|++++++|+ |||.+++.+...+..... . .... .....+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~----~-~~~~--------~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLK---DGGHLVLADFIANLLSAI----E-HEET--------TSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcC---CCCEEEEEEcccccCccc----c-cccc--------ccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 589999999999 799999988753321100 0 0000 011347899999999999999988
Q ss_pred EecC
Q 023625 266 TPML 269 (279)
Q Consensus 266 ~~~~ 269 (279)
.+..
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=123.02 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=118.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++.+| ..+++++|+ +.+++.+++. ..++.+..+|+.+ +.+ .+|+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 3568999999999999999999998 789999999 7787777642 3578999999987 433 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh-----hhcC------------C
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV-----SLFR------------G 243 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~------------~ 243 (279)
++|++++. ..+|+++.++|+ |||.+++++...+...... .........++ ...+ .
T Consensus 130 ~l~~~~~~--~~~l~~~~~~L~---~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (239)
T PRK00216 130 GLRNVPDI--DKALREMYRVLK---PGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSYLAESIR 201 (239)
T ss_pred ccccCCCH--HHHHHHHHHhcc---CCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHH
Confidence 99988764 578999999999 7999999987665432110 00000000000 0000 1
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
..++.++|.++++++||+.+++.... +..+++.+++
T Consensus 202 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 202 AFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred hCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 23478899999999999999998864 7778887764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-15 Score=129.06 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC-CCC-ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE-AIP-QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh 183 (279)
.+++|||||||+|.++..+++..+. +++++|. +.++..++ ....++.++.+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998766 5999998 55554322 123589999999876 544 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+..+. ..+|++++++|+ |||.+++.+.+.+........ ....+.. |. ..-..++.+++.++++++||+.+
T Consensus 201 H~~dp--~~~L~~l~~~Lk---pGG~lvl~~~~i~~~~~~~l~-p~~~y~~--~~--~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLV---PGGELVLETLVIDGDENTVLV-PGDRYAK--MR--NVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCH--HHHHHHHHHhcC---CCcEEEEEEEEecCCCccccC-chhHHhc--Cc--cceeCCCHHHHHHHHHHcCCceE
Confidence 88765 578999999999 799998876665543322000 0000100 00 00123488999999999999999
Q ss_pred EEEecC
Q 023625 264 KITPML 269 (279)
Q Consensus 264 ~~~~~~ 269 (279)
++....
T Consensus 271 ~~~~~~ 276 (322)
T PRK15068 271 RIVDVS 276 (322)
T ss_pred EEEeCC
Confidence 887653
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=122.10 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=117.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .+|+|++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 46789999999999999999999987 79999999 777777664 23579999999987 443 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC-----------------CeeC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-----------------GKER 246 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~r 246 (279)
+.++ ...+|+++.+.|+ |||++++++...+...... .........++...+ ....
T Consensus 118 ~~~~--~~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLK---PGGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred Cccc--HHHHHHHHHHHcC---CCcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 8776 4588999999999 7999999887644321110 000000000000000 1123
Q ss_pred CHHHHHHHHHHCCCceeEEEecCC-ceeEEEEeC
Q 023625 247 SVDDWKKLFLAAGFSHYKITPMLG-VRSLIEAYP 279 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 279 (279)
+.++|.++|+++||+++++.+..+ ...++++||
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 788999999999999999998864 467888875
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=118.88 Aligned_cols=147 Identities=20% Similarity=0.299 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC------CeEEEeeC-hhHHhhccc------C--CCCeEEeeCCCCC-CCC--cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD------IKCTVFDL-PHVVDNLQG------T--NDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~d~~~-~~~--~~ 173 (279)
....++|||+||||..+..++++-+. .++++.|+ |+++..+++ + ..++.++++|..+ |++ .+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999998877 78999999 999987763 1 3469999999998 887 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch---------------hhh
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI---------------LMV 238 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~---------------~~~ 238 (279)
|.|.+..-+.+|++.+ +.|++++|+|| |||++.+.|..--++..-..+. ...+++. ..+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLK---pGGrf~cLeFskv~~~~l~~fy-~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLK---PGGRFSCLEFSKVENEPLKWFY-DQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcC---CCcEEEEEEccccccHHHHHHH-HhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999965 88999999999 8999999987544421110100 0111111 111
Q ss_pred hhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 239 SLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 239 ~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+..=.+.-+.+|+..+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11111223889999999999999886
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=127.04 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=104.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc---c---CCCCeEEeeCCCCC-CC-Cccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ---G---TNDNLDFLGGNMFE-AI-PQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~ri~~~~~d~~~-~~-~~~D~v~~~~vl 182 (279)
..+++|||||||+|.++..++...+. .++++|. +.++..++ . ...++.+..+++.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34689999999999999999988664 7999998 66654432 1 23578888888765 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
|++.+. ...|++++++|+ |||.+++.+.+.+...... |........+. -...+.+++..+++++||
T Consensus 199 ~H~~dp--~~~L~el~r~Lk---pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-------~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 199 YHRKSP--LEHLKQLKHQLV---IKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-------YFIPSVSALKNWLEKVGF 266 (314)
T ss_pred hccCCH--HHHHHHHHHhcC---CCCEEEEEEEEecCccccccCchHHHHhcccc-------ccCCCHHHHHHHHHHCCC
Confidence 998775 578999999999 7999999877665432110 00000000011 112388999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
+.+++....
T Consensus 267 ~~V~i~~~~ 275 (314)
T TIGR00452 267 ENFRILDVL 275 (314)
T ss_pred eEEEEEecc
Confidence 999887653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=126.46 Aligned_cols=146 Identities=16% Similarity=0.313 Sum_probs=111.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+..+|||||||+|..+..+++.. +..+++++|. +.+++.|++. .+++++..+|+.+ +.+ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4678899999999999988777764 5678999999 8889888741 2589999999877 554 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|++++. .++++++.++|+ |||++++.+......... ....+..++....+...+..++.++++++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lk---pGG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLK---PGGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcC---CCcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99987764 478999999999 799999998775442111 1122233332233455688999999999999
Q ss_pred ceeEEEe
Q 023625 261 SHYKITP 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887744
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=118.42 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-Q 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~ 172 (279)
+.+++.++ ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...++++...|+.+ +.+ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34555554 345689999999999999999986 568999999 888887763 12458888899876 444 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
||+|++..++|++++++...++++++++|+ |||.+++++.+..+....+ . .. ....+.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk---pgG~~~~~~~~~~~~~~~~---~-----~~-------~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTK---PGGYNLIVAAMDTADYPCT---V-----GF-------PFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcC---CCcEEEEEEEecCCCCCCC---C-----CC-------CCccCHHHHH
Confidence 999999999999998888999999999999 7999887775544322110 0 00 0123788898
Q ss_pred HHHHHCCCceeEEE
Q 023625 253 KLFLAAGFSHYKIT 266 (279)
Q Consensus 253 ~ll~~aGf~~~~~~ 266 (279)
++++ ||+++...
T Consensus 158 ~~~~--~~~~~~~~ 169 (197)
T PRK11207 158 RYYE--GWEMVKYN 169 (197)
T ss_pred HHhC--CCeEEEee
Confidence 8887 89877663
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=134.87 Aligned_cols=144 Identities=20% Similarity=0.266 Sum_probs=110.5
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcchh--hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSEL--IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV 148 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 148 (279)
..+|+++..+++...+|...|...... ........++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 467899988888888887666542221 1111122233 44678999999999999999999999999999999 788
Q ss_pred HhhcccC----CCCeEEeeCCCCC-C--CC--ccceeeehhhhccC-----------ChhHHHHHHHHHHHhCCCCCCCc
Q 023625 149 VDNLQGT----NDNLDFLGGNMFE-A--IP--QANAVLLKWILHNW-----------NDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 149 ~~~a~~~----~~ri~~~~~d~~~-~--~~--~~D~v~~~~vlh~~-----------~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
++.+++. ..+++++.+|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|+ |||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK---PGG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK---PGG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC---CCc
Confidence 8887642 3467888899865 3 33 49999999999976 34678899999999999 799
Q ss_pred EEEEEeeecCCC
Q 023625 209 KVIIIDMAIENQ 220 (279)
Q Consensus 209 ~lli~e~~~~~~ 220 (279)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999766543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=119.90 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=107.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ...++++..+|+.. +.+ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5667899999999999999999998 7889999999 777777654 24679999999876 443 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+|++++. ..+++++.++|+ |||.+++.+............. ....... .+........+..+|.++++++||
T Consensus 97 ~~~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 97 LQHLEDP--ARALAEIARVLR---PGGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred hhccCCH--HHHHHHHHHHhc---CCcEEEEEecCCCceeecCCChHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHcCC
Confidence 9998875 578999999999 7999999885432211110000 0000111 111112233456789999999999
Q ss_pred ceeEEEe
Q 023625 261 SHYKITP 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
+.+++..
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9876644
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=122.75 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=105.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--CCC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--AIP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~~--~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 34679999999999999999987 468999999 899988774 23678999999865 222 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh--hhhhhcchh---hhhhcCCeeCCHHHHHHHH
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM--ETQLCFDIL---MVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~--~~~~~~d~~---~~~~~~~~~r~~~e~~~ll 255 (279)
++|++++.. .+|+++.++|+ |||.+++............... .......+. -.........+++++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lk---pgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLR---PGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcC---CCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999887764 78999999999 7999988654322100000000 000000000 0000112235789999999
Q ss_pred HHCCCceeEEEecCCce
Q 023625 256 LAAGFSHYKITPMLGVR 272 (279)
Q Consensus 256 ~~aGf~~~~~~~~~~~~ 272 (279)
+++||+++++.-+..+.
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998776554443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=127.29 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=104.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
+..+|||||||+|.++..+++ ++.+++++|. +.+++.|+. ...+++++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 4679999999 888888873 12479999999866 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh--hhcC----CeeCCHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV--SLFR----GKERSVDDWKKLFL 256 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~----~~~r~~~e~~~ll~ 256 (279)
|++.+.+ .+|++++++|+ |||.+++......... . ........... ...+ .+..+++|+.++++
T Consensus 209 eHv~d~~--~~L~~l~r~Lk---PGG~liist~nr~~~~----~-~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~ 278 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTI---PNGATVLSTINRTMRA----Y-ASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ 278 (322)
T ss_pred HhcCCHH--HHHHHHHHHcC---CCcEEEEEECCcCHHH----H-HHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH
Confidence 9998864 78999999999 7999998764321100 0 00000000000 1111 23569999999999
Q ss_pred HCCCceeEEEe
Q 023625 257 AAGFSHYKITP 267 (279)
Q Consensus 257 ~aGf~~~~~~~ 267 (279)
++||++.++.-
T Consensus 279 ~aGf~i~~~~G 289 (322)
T PLN02396 279 RASVDVKEMAG 289 (322)
T ss_pred HcCCeEEEEee
Confidence 99999988843
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=119.10 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=90.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..++..++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++...+++++.+|+.+. ...||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 45666554 56678999999999999999999999999999999 899998887657899999998762 23699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+..++|..++. .++|++++++|+ |||.+++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lk---pgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLA---PGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcC---CCcEEEEE
Confidence 99999988764 588999999999 79998875
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-15 Score=113.58 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=96.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~~ 186 (279)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +...||+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 45678999999999999999976633 9999999 777766 122222222112 233699999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh--cCCeeCCHHHHHHHHHHCCCceeE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--FRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+ ...+|+++++.|+ |||.+++.+....... + .......+... .....++.++|+++++++||++++
T Consensus 93 d--~~~~l~~l~~~Lk---pgG~l~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 D--PEEFLKELSRLLK---PGGYLVISDPNRDDPS---P----RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHHCEE---EEEEEEEEEEBTTSHH---H----HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--HHHHHHHHHHhcC---CCCEEEEEEcCCcchh---h----hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6 5689999999999 7999999887653310 0 01111111111 234667999999999999999875
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=116.12 Aligned_cols=136 Identities=23% Similarity=0.421 Sum_probs=100.5
Q ss_pred CCCEEEEecCCccHHHHHHH-HHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--C-Cccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIA-TAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--I-PQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~-~~~D~v~~~~v 181 (279)
...+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|+. ..++++|..+|+.+ + . ..||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5688999999999 999998875 23589999999998 5 3 36999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh--c-CCeeCCHHHHHHHHHHC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--F-RGKERSVDDWKKLFLAA 258 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~-~~~~r~~~e~~~ll~~a 258 (279)
+|++++.. .+|+++.++|+ ++|.+++.+......... .... ...+.+... . .+. +.++|..+|++|
T Consensus 83 l~~~~~~~--~~l~~~~~~lk---~~G~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLK---PGGILIISDPNHNDELPE-QLEE---LMNLYSEVWSMIYIGN--DKEEWKYILEEA 151 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEE---EEEEEEEEEEEHSHHHHH-HHHH---HHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred hhhccCHH--HHHHHHHHHcC---CCcEEEEEECChHHHHHH-HHHH---HHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence 99888864 78999999999 799999988773221100 0000 001111111 0 122 778999999999
Q ss_pred C
Q 023625 259 G 259 (279)
Q Consensus 259 G 259 (279)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=116.15 Aligned_cols=181 Identities=11% Similarity=0.074 Sum_probs=115.3
Q ss_pred hhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc
Q 023625 76 DRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 76 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 154 (279)
+.+..++.....+...|..........+++.++....+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~ 95 (219)
T TIGR02021 18 ARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARN 95 (219)
T ss_pred HHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 33333333334444444332233333344433311235789999999999999999886 458999999 888888764
Q ss_pred C------CCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh
Q 023625 155 T------NDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228 (279)
Q Consensus 155 ~------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~ 228 (279)
. .+++++..+|+.+....||+|++..+++++++++..++++++.+.++ +++ ++.+. +... . . .
T Consensus 96 ~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~---~~~-~i~~~---~~~~-~--~-~ 164 (219)
T TIGR02021 96 RAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTK---ERV-IFTFA---PKTA-W--L-A 164 (219)
T ss_pred HHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC---CCE-EEEEC---CCch-H--H-H
Confidence 1 24899999998774367999999999998988888899999999888 343 33321 1110 0 0 0
Q ss_pred hhhhcchhhhh---hcCCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 229 TQLCFDILMVS---LFRGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 229 ~~~~~d~~~~~---~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
........+.. ...-..++.+++.++++++||+++......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 00000000000 011233589999999999999999887554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-15 Score=122.63 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=109.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
..+++.+. +.++.+|||||||-|.++..+++++ +++++++.+ ++..+.+++ +.+++++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 34566665 7889999999999999999999998 899999999 666666542 4679999999987633479
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh-hcCCeeCCHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS-LFRGKERSVDDWK 252 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~r~~~e~~ 252 (279)
|.|++..++.+..++....+++++.+.|+ |||++++......+..... ......+...-. ..+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk---pgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLK---PGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSE---TTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcC---CCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 99999999999998888999999999999 7999998777765532110 000001111111 2356667899999
Q ss_pred HHHHHCCCceeEEEecC
Q 023625 253 KLFLAAGFSHYKITPML 269 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~ 269 (279)
..++++||++.++...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999998887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=113.49 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=102.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
.+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..-++.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 3444444 334579999999999999999986 568999999 888887653 11246777778755 333 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..++|++++++...++++++++|+ |||++++++....+....++ .. ....+++|+.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lli~~~~~~~~~~~~~--------~~-------~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTR---PGGYNLIVAAMDTADYPCHM--------PF-------SFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhC---CCcEEEEEEecccCCCCCCC--------Cc-------CccCCHHHHHHH
Confidence 9999999999988888899999999999 79998887755433211100 00 112378899988
Q ss_pred HHHCCCceeEEE
Q 023625 255 FLAAGFSHYKIT 266 (279)
Q Consensus 255 l~~aGf~~~~~~ 266 (279)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 47777665
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=116.22 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=125.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
..+++.+. +.++.+|||||||-|.+++..+++| +.+++++++ ++..+.+++ ..+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 44666665 8899999999999999999999999 899999999 777776653 4568999999988754559
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|-|++..+++++..+.-...++++++.|+ |||++++.....++.... ....+..-+ ...+|...+..++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~---~~G~~llh~I~~~~~~~~----~~~~~i~~y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLK---PGGRMLLHSITGPDQEFR----RFPDFIDKY--IFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcC---CCceEEEEEecCCCcccc----cchHHHHHh--CCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999 799999988877664431 001111111 123577778999999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
..+++||.+.+....+
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999988776554
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=109.87 Aligned_cols=164 Identities=15% Similarity=0.216 Sum_probs=119.5
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..++..++ .....+|+|+|||+|..+..|++++|..+++++|. +.|++.|++...+++|..+|+.+- -+..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45666676 67788999999999999999999999999999999 999999987668999999999873 34699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh----hhhhc------CCeeCC
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL----MVSLF------RGKERS 247 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~----~~~~~------~~~~r~ 247 (279)
...+||-++|. .++|.++...|. |||.|.+. .+++-..+.+ ..+.+.. .-... ....-+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~---Pgg~LAVQ---mPdN~depsH---~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLA---PGGVLAVQ---MPDNLDEPSH---RLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhC---CCceEEEE---CCCccCchhH---HHHHHHHhcCchhhhhCccccccCCCCC
Confidence 99999977775 688999999999 79987764 3333333211 1111110 00011 123348
Q ss_pred HHHHHHHHHHCCCceeEEE------ecCCceeEEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKIT------PMLGVRSLIEAY 278 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~------~~~~~~~~i~~~ 278 (279)
...|-++|...+-++ +++ ++++..+||+..
T Consensus 167 ~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 167 PAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred HHHHHHHhCccccee-eeeeeeccccCCCccchhhhe
Confidence 899999999887553 343 335566776643
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=113.35 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=89.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC--ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~~ 187 (279)
.++..+|||||||+|..+..+++..|..+++++|+ +.+++.|++...++++..+|+.++.+ .||+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667999999999999999999889999999999 89999998744678899999887654 5999999999999998
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888999999999976 688888875443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-14 Score=115.59 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=101.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHH----CCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CC--Cccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATA----FPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AI--PQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~--~~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.|++. ..++++...+... +. ..||+|++..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999988764 45679999999 9999888753 2356666554432 22 25999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh------hhcC-----CeeCCHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV------SLFR-----GKERSVDD 250 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~------~~~~-----~~~r~~~e 250 (279)
+|++++++..++|++++++++ |.+++.+...+... .......... .... .+.++.+|
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~e 206 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA-------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAE 206 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH-------HHHHHHHHHHhccCceeeccchHHHHhhcCHHH
Confidence 999999888899999999988 56666655443210 0000000000 0000 23459999
Q ss_pred HHHHHHHCCCceeEEEecC
Q 023625 251 WKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~ 269 (279)
+.+++++ ||++....+..
T Consensus 207 l~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 207 LAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHHHhhC-CCeEEecccee
Confidence 9999999 99987766543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=106.73 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=121.0
Q ss_pred hCCCC-EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----c-CCCCe-EEeeCCCCCC---CC--------
Q 023625 111 FEGLK-SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----G-TNDNL-DFLGGNMFEA---IP-------- 171 (279)
Q Consensus 111 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~-~~~ri-~~~~~d~~~~---~~-------- 171 (279)
++... +|||||+|||..+..+++++|+++..-.|. +......+ + ..+++ .-+..|+.++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 44555 499999999999999999999999888887 33322222 1 01222 1233444432 11
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc-CCeeCCHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGKERSVDD 250 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~r~~~e 250 (279)
.+|+|++.+++|-.+.+.+..+++.+.++|+ |||.+++..+..-+..... .....+|..+.... ....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~---~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLK---PGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCC---CCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 4999999999999999999999999999999 7999999988766543321 22335666665544 366789999
Q ss_pred HHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 251 WKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+.++.+++||+..+++.+|..+-++++|+
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998776666664
|
The function of this family is unknown. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=111.38 Aligned_cols=154 Identities=13% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
.+..+|||||||+|.++..+++.+ +.+++++|. +++++.|+.. ..++.+|+.+ |.+ .||+|++..++|+++|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCC
Confidence 346799999999999999999987 578999999 9999998753 3467788877 655 4999999999998877
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh--hh-hhcCC-------------eeCCHHHH
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL--MV-SLFRG-------------KERSVDDW 251 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~-~~~~~-------------~~r~~~e~ 251 (279)
. .+.|++++++|+ | .+.++|...++....... ...++... .+ ...++ .-.+.+++
T Consensus 126 ~--~~~l~e~~RvLk---p--~~~ile~~~p~~~~~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~ 196 (226)
T PRK05785 126 I--EKVIAEFTRVSR---K--QVGFIAMGKPDNVIKRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFH 196 (226)
T ss_pred H--HHHHHHHHHHhc---C--ceEEEEeCCCCcHHHHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHH
Confidence 5 578999999999 6 344556544332111000 00111100 00 01111 12278999
Q ss_pred HHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 252 KKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
.++++++| ..++...+. |..++..++|
T Consensus 197 ~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 197 REIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 99999984 667777764 5566666653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=100.49 Aligned_cols=89 Identities=24% Similarity=0.457 Sum_probs=75.8
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHH
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~ 191 (279)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ...++.+..+|+.+ |++ .||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999998 8889999999 888888875 23567799999988 665 49999999999999 4467
Q ss_pred HHHHHHHHhCCCCCCCcEEEE
Q 023625 192 KLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli 212 (279)
+++++++++|| |||+++|
T Consensus 78 ~~l~e~~rvLk---~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLK---PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEE---EEEEEEE
T ss_pred HHHHHHHHHcC---cCeEEeC
Confidence 99999999999 7998875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=113.34 Aligned_cols=99 Identities=19% Similarity=0.351 Sum_probs=83.0
Q ss_pred CCCEEEEecCCccH----HHHHHHHHCC-----CCeEEEeeC-hhHHhhcccC---------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAFP-----DIKCTVFDL-PHVVDNLQGT--------------------------- 155 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 155 (279)
+..+|+|+|||+|. +++.+++..+ +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5667777665 478999999 9999988752
Q ss_pred -----CCCeEEeeCCCCCC-CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 156 -----NDNLDFLGGNMFEA-IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 156 -----~~ri~~~~~d~~~~-~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+|+|..+|+.++ .+ .||+|+++++||++++++..+++++++++|+ |||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~---pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK---PGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 13789999999983 32 5999999999999999888999999999999 799988743
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=110.80 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=101.9
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDE 188 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~ 188 (279)
..+|||+|||+|.++..+++.+|..+++++|+ +.++..++. ..++++++.+|+.+ +.+ .||+|++.+++|+..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 47899999999999999999999999999999 788777764 23588999999887 433 59999999999987664
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
.++|+++.++|+ |||.+++.+....... . .... ....+....+.++|.++++++ |+...+.
T Consensus 115 --~~~l~~~~~~L~---~~G~l~~~~~~~~~~~------~---~~~~--~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 --SQALSELARVLK---PGGLLAFSTFGPGTLH------E---LRQS--FGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHcC---CCcEEEEEeCCccCHH------H---HHHH--HHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 578999999999 7999988754322110 0 0000 000123345788999999988 8766553
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-15 Score=105.09 Aligned_cols=88 Identities=26% Similarity=0.474 Sum_probs=59.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CC---CeEEeeCCCCCC-CC-ccceeeehhhhccCC
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----ND---NLDFLGGNMFEA-IP-QANAVLLKWILHNWN 186 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~---ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~ 186 (279)
||||||+|.++..+++++|..+++++|+ +.+++.+++. .. ++++...|.... .+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 8999777751 12 345555555543 23 699999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~l 210 (279)
+...+|+++++.|+ |||+|
T Consensus 81 --~~~~~l~~~~~~L~---pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLK---PGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-T---SS-EE
T ss_pred --hHHHHHHHHHHHcC---CCCCC
Confidence 45699999999999 79975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=109.84 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=101.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ ..+++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999875 45999999 888888764 125899999995434446999999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh-h-hhcCCeeCCHHHHHHHHHHCCCce
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM-V-SLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
+++++...+++++.+.++ ++.++... +..... . .......... . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~----~~~~i~~~---~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTR----GSLIFTFA---PYTPLL-A--LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcC----CeEEEEEC---CccHHH-H--HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 999999999999998766 44333321 111000 0 0000000000 0 001123458899999999999999
Q ss_pred eEEEecC
Q 023625 263 YKITPML 269 (279)
Q Consensus 263 ~~~~~~~ 269 (279)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=106.40 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=93.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC-ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP-QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh 183 (279)
..+..+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ...+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45678999999999999999999999999999999 888887764 12578999998865444 599999876544
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
. ...+++.+.+.|+ |||++++.....+ +.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk---~gG~lv~~~~~~~----------------------------~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLH---PGGRLVLTFILLE----------------------------NLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcC---CCeEEEEEEecHh----------------------------hHHHHHHHHHHCCCCcc
Confidence 2 3467899999999 7998877432110 34577889999999876
Q ss_pred EEE
Q 023625 264 KIT 266 (279)
Q Consensus 264 ~~~ 266 (279)
++.
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=122.30 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=109.6
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC---CCC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE---AIP-- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~---~~~-- 171 (279)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++. ..++++++.+|+.. +.+
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34455444 3456799999999999999999875 47999999 888877653 23579999999863 333
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++..++|++++++..++|++++++|+ |||.+++.|.......... . . ......|+..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk---~gG~l~~~d~~~~~~~~~~----~--~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLK---VGGYIFFRESCFHQSGDSK----R--K-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcC---CCeEEEEEeccCCCCCccc----c--c-------CCCCeecChHHH
Confidence 5999999999999999888999999999999 7999999987654332110 0 0 112334578899
Q ss_pred HHHHHHCCCceeE
Q 023625 252 KKLFLAAGFSHYK 264 (279)
Q Consensus 252 ~~ll~~aGf~~~~ 264 (279)
.++|.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999988653
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=113.77 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=100.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
+..+|||+|||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999985 578999999 888877653 22378888888876 334 59999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++++...+++++.++|+ |||.++++...-.+....++ .. ....+++|++++++. |+++..
T Consensus 198 ~~~~~~~~l~~~~~~Lk---pgG~~l~v~~~~~~~~~~~~--------p~-------~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTN---PGGYNLIVCAMDTEDYPCPM--------PF-------SFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcC---CCcEEEEEEecccccCCCCC--------CC-------CcccCHHHHHHHhCC--CEEEEE
Confidence 98888999999999999 79998877654433221100 00 112378899998865 887766
Q ss_pred E
Q 023625 266 T 266 (279)
Q Consensus 266 ~ 266 (279)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 3
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=110.97 Aligned_cols=147 Identities=13% Similarity=0.165 Sum_probs=102.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--cccee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAV 176 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v 176 (279)
..+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.++.....+.++.+|+.+ +.+ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44455444 235679999999999999988774 578999999 99999888654456788999877 554 49999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHH
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~ 256 (279)
++..++|..++. ..+|+++.++|+ |||.+++......... . ....+..+.. ........+.+++.++++
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk---~gG~l~~~~~~~~~~~---e--l~~~~~~~~~-~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVR---PGGVVAFTTLVQGSLP---E--LHQAWQAVDE-RPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcC---CCeEEEEEeCCCCchH---H--HHHHHHHhcc-CCccccCCCHHHHHHHHH
Confidence 999999866553 588999999999 7999988765432110 0 0011100000 001123348899999999
Q ss_pred HCCCce
Q 023625 257 AAGFSH 262 (279)
Q Consensus 257 ~aGf~~ 262 (279)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=103.16 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=103.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-CCccceeeehhhhccCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-IPQANAVLLKWILHNWN 186 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~~~D~v~~~~vlh~~~ 186 (279)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|..+. .+.||+|++.-.+|..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999999 888887764 224688899998773 34699999988777654
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 187 DE-------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 187 ~~-------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
++ ...++|+++.+.|+ |||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---~gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK---EGGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC---CCCEEEEEEeccC----------------------------C
Confidence 32 13578999999999 7999998763221 2
Q ss_pred HHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
..++.+++++.||....+...+-+.--++++
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 4678899999999998888777665555554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-12 Score=104.62 Aligned_cols=140 Identities=6% Similarity=0.113 Sum_probs=96.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh----cccCCCCeEEeeCCCCCC-----CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN----LQGTNDNLDFLGGNMFEA-----IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~ri~~~~~d~~~~-----~~-~~D~v~~~ 179 (279)
..+..+|||+|||+|.++..+++..+..+++++|+ +.+++. ++.. .++.++.+|...+ .+ .+|+|+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~~~~D~i~~- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVVEKVDVIYQ- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhccccCCEEEE-
Confidence 56788999999999999999999987668999999 766653 3333 6789999998653 12 4898874
Q ss_pred hhhccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 180 WILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 180 ~vlh~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
+.+++ +...+|++++++|+ |||+++|.=...+-+....+ .+..++..++++++
T Consensus 148 ----d~~~p~~~~~~L~~~~r~LK---pGG~lvI~v~~~~~d~~~~~-------------------~~~~~~~~~~l~~a 201 (226)
T PRK04266 148 ----DVAQPNQAEIAIDNAEFFLK---DGGYLLLAIKARSIDVTKDP-------------------KEIFKEEIRKLEEG 201 (226)
T ss_pred ----CCCChhHHHHHHHHHHHhcC---CCcEEEEEEecccccCcCCH-------------------HHHHHHHHHHHHHc
Confidence 33333 33457899999999 79999984211110000000 01224456999999
Q ss_pred CCceeEEEecCCc---eeEEEEe
Q 023625 259 GFSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 259 Gf~~~~~~~~~~~---~~~i~~~ 278 (279)
||+.++...+... +.++.++
T Consensus 202 GF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 202 GFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999887644 4444443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=104.99 Aligned_cols=132 Identities=12% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-C---
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-A--- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~--- 169 (279)
++..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ...++++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 678999999 777776421 12479999999998 3
Q ss_pred CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
.+.||.|+-+.++|+++++.....++++.++|+ |||+++++....+......| -...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk---pgG~~ll~~~~~~~~~~~gp-----------------p~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP---PGARQLLITLDYDQSEMAGP-----------------PFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEcCCCCCCCc-----------------CCCCCHH
Confidence 235999999999999999999999999999999 79988877665533211101 0113888
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
|++++|+. +|.+..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99998874 45555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=99.12 Aligned_cols=89 Identities=24% Similarity=0.443 Sum_probs=74.2
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCC-CC--Cccceeeeh-hhhcc
Q 023625 117 LVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFE-AI--PQANAVLLK-WILHN 184 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~-~~--~~~D~v~~~-~vlh~ 184 (279)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++. ..+++++.+|+.+ +. +.||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 9999888752 2589999999987 43 369999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCc
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
+++++..++|+++.+.++ |||
T Consensus 81 ~~~~~~~~ll~~~~~~l~---pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLR---PGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEE---EEE
T ss_pred CCHHHHHHHHHHHHHHhC---CCC
Confidence 999999999999999999 676
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=107.12 Aligned_cols=142 Identities=18% Similarity=0.336 Sum_probs=100.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-C---CCCe-EEeeCCCCC--CCC-ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-T---NDNL-DFLGGNMFE--AIP-QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---~~ri-~~~~~d~~~--~~~-~~D~v~~~~vlh 183 (279)
+..+.||.|+|.|..+..++...- -++-++|. +..++.|++ . ..++ ++.+.-+.+ |.+ .||+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998876542 36788888 888888884 1 1343 455444443 443 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+++|++.+++|++|+++|+ |+|.|+|=|.+...... .+|- ..++-.|+.+.|+++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~---~~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALK---PNGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEE---EEEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCc---CCcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999 79999998988764310 1111 234567899999999999999999
Q ss_pred EEEecCCc
Q 023625 264 KITPMLGV 271 (279)
Q Consensus 264 ~~~~~~~~ 271 (279)
.....+++
T Consensus 198 ~~~~Q~~f 205 (218)
T PF05891_consen 198 KEEKQKGF 205 (218)
T ss_dssp EEEE-TT-
T ss_pred EeccccCC
Confidence 87665443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=107.54 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=98.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhc---cc---CCCCeEEeeCCCCC-C-CCccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNL---QG---TNDNLDFLGGNMFE-A-IPQANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~---~~~ri~~~~~d~~~-~-~~~~D~v~~~~vlh 183 (279)
.+++|||||||+|.++..++++.+. .++++|. +....+. +. ...++.+.+.-+.. + ...||+|++..||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 4689999999999999999999765 6999996 4333322 22 22334444333333 2 23599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
|..++ ...|+.+++.|+ |||.+++-..+++...... |...++.+.+. --.-+...+..|++++||+
T Consensus 194 Hrr~P--l~~L~~Lk~~L~---~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv-------~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 194 HRRSP--LDHLKQLKDSLR---PGGELVLETLVIDGDENTVLVPEDRYAKMRNV-------WFIPSVAALKNWLERAGFK 261 (315)
T ss_pred ccCCH--HHHHHHHHHhhC---CCCEEEEEEeeecCCCceEEccCCcccCCCce-------EEeCCHHHHHHHHHHcCCc
Confidence 98876 578999999999 7998887777766544321 11111111111 1123889999999999999
Q ss_pred eeEEEecC
Q 023625 262 HYKITPML 269 (279)
Q Consensus 262 ~~~~~~~~ 269 (279)
.+++.++.
T Consensus 262 ~v~~v~~~ 269 (315)
T PF08003_consen 262 DVRCVDVS 269 (315)
T ss_pred eEEEecCc
Confidence 99997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=113.49 Aligned_cols=147 Identities=9% Similarity=0.058 Sum_probs=108.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCCCCCccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFEAIPQANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~ 187 (279)
..+..+|||||||+|.++..+++.+ +++++++|+ +.+++.+++. ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 5677899999999999999999876 679999999 8888887752 23578888887653346999999999999888
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
.....+++++.++|+ |||++++.+...+..... ...+.+-+. ..+|...+.+++...++ .||.+.++..
T Consensus 244 ~~~~~~l~~i~r~Lk---pGG~lvl~~i~~~~~~~~-----~~~~i~~yi--fp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 244 KNYRTYFEVVRRCLK---PDGLFLLHTIGSNKTDTN-----VDPWINKYI--FPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred HHHHHHHHHHHHHcC---CCcEEEEEEccCCCCCCC-----CCCCceeee--cCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 777899999999999 799999987654432211 011221111 12345557788877755 5898887766
Q ss_pred cC
Q 023625 268 ML 269 (279)
Q Consensus 268 ~~ 269 (279)
.+
T Consensus 313 ~~ 314 (383)
T PRK11705 313 FG 314 (383)
T ss_pred Ch
Confidence 54
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=108.97 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCC----CeEEeeCCCCCCCCccceeeehhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TND----NLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+.+|||||||+|.++..|++. +.+++++|. +.+++.|++ ... |+++...|.....+.||+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 477999999999999999997 478999999 899988874 112 578888888776666999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcc-hhhh-hh----cCCeeCCHHHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD-ILMV-SL----FRGKERSVDDWKKLF 255 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~-~~----~~~~~r~~~e~~~ll 255 (279)
++|..|. ..+++.+.+.|+ |||+++|......-.... ...+++ .... +- +..+.-+++|...++
T Consensus 168 leHV~dp--~~~l~~l~~~lk---P~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLK---PNGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhC---CCCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 9998775 488999999999 799999987544322111 011111 1111 11 113445899999999
Q ss_pred HHCCCceeEEEe
Q 023625 256 LAAGFSHYKITP 267 (279)
Q Consensus 256 ~~aGf~~~~~~~ 267 (279)
..+++++..+.-
T Consensus 238 ~~~~~~v~~v~G 249 (282)
T KOG1270|consen 238 NANGAQVNDVVG 249 (282)
T ss_pred HhcCcchhhhhc
Confidence 999998877653
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=108.81 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=103.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C--CCccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A--IPQANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~~~~D~v~~~~vlh~ 184 (279)
...+|||||||-|.++..+++.. .++++.|. ++.++.|+. ..-.+++.+....+ . ...||+|++..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 57899999999999999999985 88999999 899998884 22234566665554 2 246999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--hhhcC----CeeCCHHHHHHHHHHC
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--VSLFR----GKERSVDDWKKLFLAA 258 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~----~~~r~~~e~~~ll~~a 258 (279)
.++++ .++++|.+.+| |||.+++......-.. . .......-+. ++--+ .+...++|+..++.++
T Consensus 137 v~dp~--~~~~~c~~lvk---P~G~lf~STinrt~ka----~-~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 VPDPE--SFLRACAKLVK---PGGILFLSTINRTLKA----Y-LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred cCCHH--HHHHHHHHHcC---CCcEEEEeccccCHHH----H-HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 99986 58999999999 7998888776532210 0 0000000011 11111 3455889999999999
Q ss_pred CCceeEEEec
Q 023625 259 GFSHYKITPM 268 (279)
Q Consensus 259 Gf~~~~~~~~ 268 (279)
|+.+.+...+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998877544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=111.02 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=95.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCCCCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 578999999 8888877642 13578888887543346999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc----CCeeCCHHHHHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF----RGKERSVDDWKKLFLA 257 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~r~~~e~~~ll~~ 257 (279)
+|+++++....+++.+.+. . + |+++|.. .+..... ........ .+... .....+++++++++++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~---~-g~liIs~--~p~~~~~---~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-A---E-KRLIISF--APKTLYY---DILKRIGE--LFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-c---C-CEEEEEe--CCcchHH---HHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHH
Confidence 9989988877888888754 4 2 4444422 1111000 00000000 00000 0112379999999999
Q ss_pred CCCceeEEEec
Q 023625 258 AGFSHYKITPM 268 (279)
Q Consensus 258 aGf~~~~~~~~ 268 (279)
+||++.+....
T Consensus 290 AGf~v~~~~~~ 300 (315)
T PLN02585 290 AGWKVARREMT 300 (315)
T ss_pred CCCEEEEEEEe
Confidence 99998765433
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-12 Score=107.84 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=79.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCC--CC-cc-----ce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEA--IP-QA-----NA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~--~~-~~-----D~ 175 (279)
++..+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+++. ..++.++.+|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3557899999999999999999987 589999999 8888776531 23567789999763 22 22 35
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+++...+++++++++..+|++++++|+ |||.+++
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~---pgG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLG---PGGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 566688999999999999999999999 7998876
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=109.18 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCCCEEEEecCCccHHHH--HHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCCCC---Cccceeee
Q 023625 112 EGLKSLVDVAGGTGIMAR--AIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFEAI---PQANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~---~~~D~v~~ 178 (279)
.+.++|+|||||.|-++. .+++.+|+.+++++|. +.+++.|++ ..+|++|..+|..+.. ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 367899999999885433 3445689999999999 888888774 2468999999998732 36999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
. ++|+|..++-.++|+++++.|+ |||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~Lk---PGG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMA---PGALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcC---CCcEEEEe
Confidence 9 9999987777899999999999 79988763
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=96.50 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=90.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh 183 (279)
++..+|||+|||+|..+..++++.|..+++++|. +.+++.+++ ..++++++.+|+.+ +.. .||+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 4478999999999999999999999999999999 888877763 12459999999877 323 5999998652
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
.....+++.+++.|+ |||++++++... ...++.++.+.-|+.+.
T Consensus 122 ----~~~~~~l~~~~~~Lk---pGG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ----ASLSDLVELCLPLLK---PGGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cCHHHHHHHHHHhcC---CCeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 124578999999999 799999874211 23456666777798877
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
+++.
T Consensus 166 ~~~~ 169 (187)
T PRK00107 166 EVIE 169 (187)
T ss_pred eeEE
Confidence 7654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=99.66 Aligned_cols=150 Identities=18% Similarity=0.151 Sum_probs=104.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeE-EeeCCCCC-C-CC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLD-FLGGNMFE-A-IP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~-~-~~--~~D~v~~~~ 180 (279)
.....||+||||||..-... .--|.++++++|. +.+.+.+.. ....++ |+.++..+ + .+ ++|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 34556899999999975422 2226789999999 777665542 235676 88888776 4 33 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+|- +.++.++.|+++.++|+ |||+++++|++..+....... -....+-.....+.|...|.+.| +.|++|-|
T Consensus 154 vLC--Sve~~~k~L~e~~rlLR---pgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLC--SVEDPVKQLNEVRRLLR---PGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEe--ccCCHHHHHHHHHHhcC---CCcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 886 55567899999999999 799999999987765433110 01122222222344667777666 56789999
Q ss_pred ceeEEEecCC
Q 023625 261 SHYKITPMLG 270 (279)
Q Consensus 261 ~~~~~~~~~~ 270 (279)
+..+....+.
T Consensus 226 ~~~~~kr~~~ 235 (252)
T KOG4300|consen 226 SIDSCKRFNF 235 (252)
T ss_pred ccchhhcccC
Confidence 9887766653
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=100.61 Aligned_cols=132 Identities=11% Similarity=0.166 Sum_probs=100.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCCC----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFEA---- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~~---- 169 (279)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999985 788999999 777776421 136799999999973
Q ss_pred CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
.+.||+|+-+.++|+++++...+.++.+.++|+ |||+++++....++.....|. ...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~---pgG~~~l~~~~~~~~~~~gPp-----------------~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLP---AGCRGLLVTLDYPQEELAGPP-----------------FSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEeCCccCCCCC-----------------CCCCHH
Confidence 235899999999999999999999999999999 799866665555432211110 123889
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
|++++++. +|.+..+.
T Consensus 174 el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 174 EVEALYAG-CFEIELLE 189 (218)
T ss_pred HHHHHhcC-CceEEEee
Confidence 99999964 26655554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=98.29 Aligned_cols=124 Identities=20% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C-CCccceeeehhhhccC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A-IPQANAVLLKWILHNW 185 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~-~~~~D~v~~~~vlh~~ 185 (279)
..+|||||||+|..+..++...|..+++++|. +.+++.+++ . .++++++.+|+.+ + ...||+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999999999999999999 777765542 1 2579999999976 3 23699998866 543
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH---CCCce
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA---AGFSH 262 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~---aGf~~ 262 (279)
...+++.+.+.|+ |||.+++... . . ...++..+.++ .||..
T Consensus 121 ----~~~~~~~~~~~Lk---pgG~lvi~~~---~---~-----------------------~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 121 ----LNVLLELTLNLLK---VGGYFLAYKG---K---K-----------------------YLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred ----HHHHHHHHHHhcC---CCCEEEEEcC---C---C-----------------------cHHHHHHHHHhhhhcCceE
Confidence 2356888899999 7999887531 0 0 23455555555 69998
Q ss_pred eEEEecCCc-eeEE
Q 023625 263 YKITPMLGV-RSLI 275 (279)
Q Consensus 263 ~~~~~~~~~-~~~i 275 (279)
++..+..++ ..++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (181)
T TIGR00138 165 LEVPPLTGPDRHLV 178 (181)
T ss_pred eeccccCCCceEEE
Confidence 888766543 3444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=102.53 Aligned_cols=145 Identities=15% Similarity=0.277 Sum_probs=109.8
Q ss_pred EEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-----CC--ccceeeehhh
Q 023625 116 SLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-----IP--QANAVLLKWI 181 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-----~~--~~D~v~~~~v 181 (279)
+|++||||.|....-+++.+|+ +++...|. |.+++..++ ...++.....|+..+ .+ ..|++.+..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 99999999 888888775 235666666666542 11 4899999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCe---eCCHHHHHHHHHHC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK---ERSVDDWKKLFLAA 258 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~r~~~e~~~ll~~a 258 (279)
|..++++.....+++++++|| |||.|++-|....+-... .+. ....++-+..+...|. -.+.+++.+||.+|
T Consensus 154 LSAi~pek~~~a~~nl~~llK---PGG~llfrDYg~~Dlaql-RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLK---PGGSLLFRDYGRYDLAQL-RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhC---CCcEEEEeecccchHHHH-hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 999999999999999999999 899999988765543211 000 1113333333333232 24999999999999
Q ss_pred CCceeEE
Q 023625 259 GFSHYKI 265 (279)
Q Consensus 259 Gf~~~~~ 265 (279)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987765
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-12 Score=108.68 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=85.9
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C----CCCeEEeeCCCCCCC-C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T----NDNLDFLGGNMFEAI-P 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~d~~~~~-~ 171 (279)
-+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ . ..++++..+|.++.. +
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 3455554 22346999999999999999999999999999999 788887763 1 137899999998754 3
Q ss_pred -ccceeeehhhhc---cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILH---NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh---~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++.-.+| .++++.+.++++.+++.|+ |||.++++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk---pGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK---INGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc---cCCEEEEEE
Confidence 599999965554 3566677899999999999 799999874
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=100.07 Aligned_cols=132 Identities=13% Similarity=0.259 Sum_probs=94.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
-.+..+++|+|||.|.++..|+.++ -+++++|. +..++.|++ ..++|+++..|+.+..| .||+|+++.++|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 3556899999999999999999986 36999999 999999884 24789999999987544 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 185 WND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 185 ~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+++ ++...++.++.++|+ |||.+++.... +. .... -|.....+.+.++|.+. |+.+
T Consensus 119 L~~~~~L~~~l~~l~~~L~---pgG~LV~g~~r-d~-----------~c~~-------wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALA---PGGHLVFGHAR-DA-----------NCRR-------WGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEE---EEEEEEEEEE--HH-----------HHHH-------TT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhC---CCCEEEEEEec-CC-----------cccc-------cCcccchHHHHHHHHHH-hhhe
Confidence 986 678899999999999 79999886542 11 0110 13344667788888886 5555
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
+...
T Consensus 176 ~~~~ 179 (201)
T PF05401_consen 176 ERVE 179 (201)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=97.93 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=83.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
.++++++ ..+..++||+|||.|..+..|+++ +..|+++|. +..++.++. ..-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3555555 445789999999999999999998 678999999 767766542 23458999999987 454 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
+|++..++++++.+...++++++.+.++ |||.++++..+-
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~---pGG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATK---PGGYNLIVTFME 136 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEE---EEEEEEEEEEB-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcC---CcEEEEEEEecc
Confidence 9999899999999999999999999999 799888866543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=97.65 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh~~ 185 (279)
++..+|||||||+|.++..+++. ...+++++|+ +.+++.++. .+++++.+|+.+ +.+ .||+|++.+++|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 45679999999999999988876 3567899999 788887764 357888888764 233 49999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-----hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-----ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++. ..+|+++.++++ .+++.-+............ .....+........+.+..+.+++.++++++||
T Consensus 89 ~d~--~~~l~e~~r~~~------~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNP--EEILDEMLRVGR------HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCH--HHHHHHHHHhCC------eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 774 467888877665 2222211100000000000 000000000000112345689999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 998876553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-11 Score=98.56 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=93.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
.+..+|||+|||+|.+++.+++..+ .+++++|+ +.+++.|++. .+++.+..+|. .||+|++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4678999999999999998777544 36999999 8888877742 23444444332 5899987532
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
.+....+++++.++|+ |||.+++.+.... ..+++.+.+++.||++.+
T Consensus 189 --~~~~~~l~~~~~~~Lk---pgG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLK---PGGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcC---CCcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 2334678999999999 7999988643211 345788999999999999
Q ss_pred EEecCCceeEEEEeC
Q 023625 265 ITPMLGVRSLIEAYP 279 (279)
Q Consensus 265 ~~~~~~~~~~i~~~~ 279 (279)
+.....+.+++..+|
T Consensus 236 ~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 236 VLERGEWVALVGKKK 250 (250)
T ss_pred EEEeCCEEEEEEEeC
Confidence 998888888875543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=99.89 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C--C-Cccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A--I-PQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-~~~D~v~~~~vl 182 (279)
.+..+|||||||+|.++..+++. ..+++++|. +..++.+++ ...++++...|+.+ + . ..||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988875 467999999 777776663 23467788777754 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcc---hhhhhhc---CCeeCCHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD---ILMVSLF---RGKERSVDDWKKLFL 256 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d---~~~~~~~---~~~~r~~~e~~~ll~ 256 (279)
++.++. ..+|+++.+.|+ |||.+++..... . . .......... ....... .....+.++|.++++
T Consensus 125 ~~~~~~--~~~l~~~~~~L~---~gG~l~v~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVK---PGGLVFFSTLNR--N--L-KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred hccCCH--HHHHHHHHHHcC---CCcEEEEEecCC--C--h-HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 988765 478999999999 799988765321 1 1 0000000000 0000000 123448899999999
Q ss_pred HCCCceeEEEe
Q 023625 257 AAGFSHYKITP 267 (279)
Q Consensus 257 ~aGf~~~~~~~ 267 (279)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999887753
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-11 Score=98.08 Aligned_cols=133 Identities=8% Similarity=0.064 Sum_probs=91.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hh----HHhhcccCCCCeEEeeCCCCCC------CCccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PH----VVDNLQGTNDNLDFLGGNMFEA------IPQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~------~~~~D~v~~ 178 (279)
+.+..+|||+|||+|.++..+++... .-+++.+|+ +. +++.++.. .+|.++.+|...+ .+.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 56778999999999999999999863 458999998 54 44555443 6889999998653 235899988
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
... .+++...++.++.+.|+ |||.++|.....+-....++ .++-.+|. ++|+++
T Consensus 209 Dva----~pdq~~il~~na~r~LK---pGG~~vI~ika~~id~g~~p------------------e~~f~~ev-~~L~~~ 262 (293)
T PTZ00146 209 DVA----QPDQARIVALNAQYFLK---NGGHFIISIKANCIDSTAKP------------------EVVFASEV-QKLKKE 262 (293)
T ss_pred eCC----CcchHHHHHHHHHHhcc---CCCEEEEEEeccccccCCCH------------------HHHHHHHH-HHHHHc
Confidence 653 23345567778999999 79999984222111111100 00011344 788999
Q ss_pred CCceeEEEecCC
Q 023625 259 GFSHYKITPMLG 270 (279)
Q Consensus 259 Gf~~~~~~~~~~ 270 (279)
||+.++...+..
T Consensus 263 GF~~~e~v~L~P 274 (293)
T PTZ00146 263 GLKPKEQLTLEP 274 (293)
T ss_pred CCceEEEEecCC
Confidence 999999988753
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=95.88 Aligned_cols=99 Identities=20% Similarity=0.431 Sum_probs=80.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
...+|||+|||+|.++..+++++|..+++++|+ +.+++.++. . .+.+++...|.+++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888888764 1 1239999999998654 5999999877775
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WND---EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~---~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.+ +-..++++.+.+.|+ |||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk---~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLK---PGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhcc---CCCEEEEEe
Confidence 544 346789999999999 799997644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-11 Score=98.17 Aligned_cols=124 Identities=23% Similarity=0.373 Sum_probs=93.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--ccceeeehhh---
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--QANAVLLKWI--- 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~v~~~~v--- 181 (279)
...+|||+|||+|.++..+++.+|..+++++|+ +.+++.++. ..++++++.+|+.++.+ .||+|++.-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999999 888887763 12479999999987543 5999987322
Q ss_pred ---hccCChh------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 182 ---LHNWNDE------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 182 ---lh~~~~~------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
+|.+..+ ....+++++.+.|+ |||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~---~gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK---PGGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc---cCCEEEEEEC-------------------------
Confidence 2222221 12478999999999 7998876210
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
....+++.++++++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998877553
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.1e-11 Score=87.98 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=75.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--C-C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--A-I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~-~~~D~v~~~~ 180 (279)
..+..+|+|+|||+|.++..+++++|..+++++|+ +.+++.++. ...+++++.+|... + . +.+|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34567999999999999999999999999999999 888877653 12578999888763 1 2 3699999866
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..+ ...++++++++.|+ |||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk---~gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLR---PGGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcC---CCCEEEEE
Confidence 443 34588999999999 79988764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=104.35 Aligned_cols=100 Identities=17% Similarity=0.332 Sum_probs=82.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC-ccceeeehhhhccC-
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP-QANAVLLKWILHNW- 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~- 185 (279)
...+|||+|||+|.++..+++++|..+++++|+ +.+++.++. ..-..++...|.++..+ .||+|++.-.+|..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCc
Confidence 346899999999999999999999999999999 788887764 22245678888877544 59999999888863
Q ss_pred --ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 --NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 --~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..+...++++++.+.|+ |||.++|+..
T Consensus 276 ~~~~~~~~~~i~~a~~~Lk---pgG~L~iVan 304 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLN---SGGELRIVAN 304 (342)
T ss_pred cccHHHHHHHHHHHHHhcC---cCCEEEEEEe
Confidence 34556799999999999 7999988654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=98.99 Aligned_cols=135 Identities=19% Similarity=0.382 Sum_probs=98.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--ccceeeehhh--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--QANAVLLKWI-- 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~v~~~~v-- 181 (279)
.+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ...++.++.+|++++.+ .||+|++.-.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 888877764 23589999999987644 5999987421
Q ss_pred ----hccCCh------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 182 ----LHNWND------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 182 ----lh~~~~------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
++...+ +...++++++.+.|+ |||.+++ +. + .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk---~gG~l~~-e~-----g-~---------------- 240 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK---PGGWLLL-EI-----G-Y---------------- 240 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc---cCCEEEE-EE-----C-c----------------
Confidence 111111 223578899999999 7998876 21 0 0
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~ 278 (279)
...+++.+++++.||+.+++. +..+..-++.++
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 023568899999999877664 445555555554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-11 Score=97.27 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=98.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCC-CeEEeeCCCCC-C--C-Cccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TND-NLDFLGGNMFE-A--I-PQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-ri~~~~~d~~~-~--~-~~~D~v~~~~vl 182 (279)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++. ... ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36799999999999999998864 45999999 777777664 122 58888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch--hhhhhc---CCeeCCHHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI--LMVSLF---RGKERSVDDWKKLFLA 257 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--~~~~~~---~~~~r~~~e~~~ll~~ 257 (279)
|+..+. ..+|+++.++|+ |||.+++.....+.. . .. ......+. ...... .....+..++.+++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~---~gG~l~i~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLK---PGGILFFSTINRTPK--S-YL-LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HhCCCH--HHHHHHHHHhcC---CCcEEEEEecCCCch--H-HH-HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence 988775 478999999999 799988765421110 0 00 00000000 000000 1223478899999999
Q ss_pred CCCceeEEEe
Q 023625 258 AGFSHYKITP 267 (279)
Q Consensus 258 aGf~~~~~~~ 267 (279)
+||+++++..
T Consensus 194 ~G~~i~~~~~ 203 (224)
T TIGR01983 194 AGLRVKDVKG 203 (224)
T ss_pred cCCeeeeeee
Confidence 9999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=93.21 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-CC--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-AI-- 170 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~~-- 170 (279)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...++++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34679999999999999999997 667999999 777776421 14589999999998 32
Q ss_pred ---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 171 ---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 171 ---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
..||+|+-+.+|+.++++...+..+.+.++|+ |||.++++....+.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~---pgg~llll~~~~~~ 168 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS---NNTQILLLVMEHDK 168 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC---CCcEEEEEEEecCC
Confidence 25999999999999999999999999999999 79999988765543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=87.55 Aligned_cols=124 Identities=17% Similarity=0.307 Sum_probs=91.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCC-eEEeeCCCCCCCC--ccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDN-LDFLGGNMFEAIP--QANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~~~~--~~D~v~~~~v 181 (279)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..++ +.++.+|+.++.+ .+|+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 578999999 888887753 1223 8899999887544 5999997654
Q ss_pred hccCC-------------------hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC
Q 023625 182 LHNWN-------------------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR 242 (279)
Q Consensus 182 lh~~~-------------------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 242 (279)
+.... ......+++++.++|+ |||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk---~gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK---PGGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC---CCeEEEEEEccc-------------------------
Confidence 32211 1224568999999999 799887753210
Q ss_pred CeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 243 GKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 243 ~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 13457889999999998876544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=94.29 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=92.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-CC-ccceeeehhhhccCChhH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-IP-QANAVLLKWILHNWNDEE 189 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~~~~ 189 (279)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++...+++++.+|+.+. .. .||+|++.-.++..+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999999887789999999 999998887556899999999873 23 599999987777654432
Q ss_pred H------------------HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 190 S------------------VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 190 ~------------------~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
. .+.++.....|+ |+|.+.++ +... | ++ ....+.+||
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~---p~G~~~~~---yss~----~------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIV---PTGSAGFA---YSGR----P------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheec---CCceEEEE---Eecc----c------cc---------cccCCHHHH
Confidence 2 345666677788 67766554 1111 1 10 112278899
Q ss_pred HHHHHHCCCce
Q 023625 252 KKLFLAAGFSH 262 (279)
Q Consensus 252 ~~ll~~aGf~~ 262 (279)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999863
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-10 Score=92.00 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=87.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC-cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP-QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~-~~ 173 (279)
+-+++.++ .....+|+|+|||.|.+++.+++.+|..+++.+|. ...++.++.. ..+.++...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 34566665 33445999999999999999999999999999999 7778887741 2333678888888765 59
Q ss_pred ceeeehhhhccC---ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 174 NAVLLKWILHNW---NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 174 D~v~~~~vlh~~---~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+|++.=.+|.- .+.-+.++++.+.+.|+ +||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~---~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLK---PGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhc---cCCEEEEEEc
Confidence 999998888752 23344589999999999 7999998765
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=95.83 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCC-CC-C--CC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNM-FE-A--IP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~-~~-~--~~--~~D~v~~~~ 180 (279)
+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+ .. + .+ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 888887763 126799999998 33 3 32 499999865
Q ss_pred hhccCC------hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWN------DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~------~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+... ......+|++++++|+ |||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lk---pgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLK---PGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcC---CCCEEEEEc
Confidence 432111 1123578999999999 799998854
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-10 Score=85.84 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=79.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC---CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA---IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~~~D~v~~~~v 181 (279)
..++.+++|||||+|..+++++...|..+++.+|. ++.++..+. ..++++++.||..+- .+.+|.|++.--
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67788999999999999999999999999999998 777766553 258999999998762 346999999765
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
- ....+|+.+...|+ |||+|++.-
T Consensus 112 ~------~i~~ile~~~~~l~---~ggrlV~na 135 (187)
T COG2242 112 G------NIEEILEAAWERLK---PGGRLVANA 135 (187)
T ss_pred C------CHHHHHHHHHHHcC---cCCeEEEEe
Confidence 2 34578999999999 799998743
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=91.26 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=112.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC------CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA------IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~------~~~~D~v 176 (279)
...-+||||.||+|.+....++.+|. .++...|. +..++..++ +.+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999999999999997 78999999 777777653 455669999999983 2458999
Q ss_pred eehhhhccCChhHHH-HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC-----eeCCHHH
Q 023625 177 LLKWILHNWNDEESV-KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG-----KERSVDD 250 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~-~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~r~~~e 250 (279)
+.+.+...++|++.+ ..|+-+++++. |||.++....-+..+-. +........-+| +.|+..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~---pgG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALE---PGGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhC---CCcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence 999999999998755 47999999999 79987764422221110 111111111112 4579999
Q ss_pred HHHHHHHCCCceeEE-EecCCceeEEEEe
Q 023625 251 WKKLFLAAGFSHYKI-TPMLGVRSLIEAY 278 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~-~~~~~~~~~i~~~ 278 (279)
+.+|+++|||..+.. .+.-|..+|-.++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeec
Confidence 999999999985543 4445666666655
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=91.89 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--- 171 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--- 171 (279)
+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ ...+++++.+|..+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 444443 45678999999999999999998864 568999999 888877663 23468999999987332
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++...+++++ +++.+.|+ |||++++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~---~gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLK---DGGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcC---cCcEEEEE
Confidence 599999988876554 35667899 79998774
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.1e-10 Score=91.10 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=100.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-AI- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~~- 170 (279)
..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...+|++.++|+|+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456779999999999999999997 578999999 888877520 13578999999998 32
Q ss_pred C--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCC-CchhhhhhhhcchhhhhhcCCeeCC
Q 023625 171 P--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ-DKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 171 ~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
. .||+|+=+.+|+.++++...+..+.+.+.|+ |||+++++....+.... ++|+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~---p~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK---PGGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE---EEEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhC---CCCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 2 4999999999999999999999999999999 79996666555443322 2221 127
Q ss_pred HHHHHHHHHHCCCceeEEE
Q 023625 248 VDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~ 266 (279)
.+|++++|. .+|++..+.
T Consensus 172 ~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEe
Confidence 889999999 788877664
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-09 Score=94.37 Aligned_cols=135 Identities=16% Similarity=0.286 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-CC---ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-IP---QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~---~~D~v~~~~vl 182 (279)
.+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ ...+++++.+|++++ .+ .||+|++.=.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 899988774 345899999999763 22 49999984321
Q ss_pred ccCC---------------------h--hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 183 HNWN---------------------D--EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 183 h~~~---------------------~--~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
..-+ + +-..++++.+.+.|+ |||.++ +|.-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk---pgG~li-lEiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA---EGGFLL-LEHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC---CCcEEE-EEECcc---------------------
Confidence 0000 0 113467777778899 688765 332110
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~ 278 (279)
..+++.+++++.||+.+++. +..+..-++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 24578889999999877664 456655555443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=88.40 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=74.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----C--CCCeEEeeCCCCC--C-C-Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----T--NDNLDFLGGNMFE--A-I-PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~--~-~-~~~D~v~~ 178 (279)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ . .++++++.+|..+ + . +.+|+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5677899999999999999998864 5679999999 888887653 1 4689999999865 2 2 35999998
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.. ...+...+++.+.+.|+ |||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lk---pgG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIK---KGGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcC---CCcEEEE
Confidence 43 22345678999999999 7998875
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=94.40 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred HHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeE
Q 023625 88 FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLD 160 (279)
Q Consensus 88 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~ 160 (279)
|....+..+++... +++.+ ..++.+|||||||||.++++.++... .+++++|+ |..++.|++ ..+++.
T Consensus 140 FGTG~H~TT~lcl~-~l~~~---~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 140 FGTGHHPTTRLCLE-LLEKY---VKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp S-SSHCHHHHHHHH-HHHHH---SSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred ccCCCCHHHHHHHH-HHHHh---ccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 55444455555544 33333 34568999999999999998888643 37999999 888888774 345666
Q ss_pred EeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 161 FLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 161 ~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
+. ...+ ....||+|+..-. .+-...+...+.+.|+ |||.+++.-....
T Consensus 215 v~--~~~~~~~~~~dlvvANI~-----~~vL~~l~~~~~~~l~---~~G~lIlSGIl~~--------------------- 263 (295)
T PF06325_consen 215 VS--LSEDLVEGKFDLVVANIL-----ADVLLELAPDIASLLK---PGGYLILSGILEE--------------------- 263 (295)
T ss_dssp ES--CTSCTCCS-EEEEEEES------HHHHHHHHHHCHHHEE---EEEEEEEEEEEGG---------------------
T ss_pred EE--EecccccccCCEEEECCC-----HHHHHHHHHHHHHhhC---CCCEEEEccccHH---------------------
Confidence 53 1111 2246999987432 2345678888899999 6888877554321
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
..+++.+.+++ ||++.+......+.+++--|
T Consensus 264 -------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 264 -------QEDEVIEAYKQ-GFELVEEREEGEWVALVFKK 294 (295)
T ss_dssp -------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE
T ss_pred -------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEEe
Confidence 24567788877 99999999999998876444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=97.50 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=73.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC---CeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD---IKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 185 (279)
...+|||+|||+|.++..+++..|. .+++++|+ +.+++.|++...++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999998874 37899999 88998887655789999999887 654 4999987542
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ ..+++++++|+ |||+++++.
T Consensus 161 -~----~~~~e~~rvLk---pgG~li~~~ 181 (272)
T PRK11088 161 -P----CKAEELARVVK---PGGIVITVT 181 (272)
T ss_pred -C----CCHHHHHhhcc---CCCEEEEEe
Confidence 1 23678899999 799999875
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=92.92 Aligned_cols=95 Identities=20% Similarity=0.421 Sum_probs=75.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh-----
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW----- 180 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~----- 180 (279)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|++.=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888764 23689999999987544 599999741
Q ss_pred --------hhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 --------ILHNWND----------EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 --------vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.+++.+. +....+++++.+.|+ |||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~---pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT---EDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 1121111 234688999999999 7998775
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=85.68 Aligned_cols=144 Identities=12% Similarity=0.129 Sum_probs=95.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC---CC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA---IP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~---~~--~~D~v~~~~vlh~ 184 (279)
.+++++|||+|||.|.++..|.+. .++++.++++ +..+..+.+ ..+.++.+|+.+. ++ .||.|+++++|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~--rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA--RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH--cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 357899999999999999888875 6899999999 665555543 3688999998763 44 4999999999988
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC---------CCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHH
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN---------QSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll 255 (279)
...++ ++|+++.++-+ +.+|.=+.... .+.. |.. ..+.....-..+-...|..+++++.
T Consensus 88 ~~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~Grm-Pvt---~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRM-PVT---KALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred HhHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCC-CCC---CCCCCcccCCCCcccccHHHHHHHH
Confidence 76654 67888876644 33332211100 0000 000 0000000011123345999999999
Q ss_pred HHCCCceeEEEecC
Q 023625 256 LAAGFSHYKITPML 269 (279)
Q Consensus 256 ~~aGf~~~~~~~~~ 269 (279)
++.|+++.+...+.
T Consensus 156 ~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 156 RELGIRIEERVFLD 169 (193)
T ss_pred HHCCCEEEEEEEEc
Confidence 99999999887664
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-09 Score=89.95 Aligned_cols=131 Identities=14% Similarity=0.278 Sum_probs=93.0
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeeh------
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLK------ 179 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~------ 179 (279)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|++++.+ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887774 23569999999988654 59999884
Q ss_pred -------hhhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC
Q 023625 180 -------WILHNWND----------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR 242 (279)
Q Consensus 180 -------~vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 242 (279)
.++++-+. +...++++++.+.|+ |||.+++ |....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~---~gG~l~~-e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK---PNGFLVC-EIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc---CCCEEEE-EECcc------------------------
Confidence 12222111 145678999999999 6886654 43211
Q ss_pred CeeCCHHHHHHHHH-HCCCceeEEE-ecCCceeEEEE
Q 023625 243 GKERSVDDWKKLFL-AAGFSHYKIT-PMLGVRSLIEA 277 (279)
Q Consensus 243 ~~~r~~~e~~~ll~-~aGf~~~~~~-~~~~~~~~i~~ 277 (279)
..+++.+++. +.||..+++. ++.+..-++.+
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 2335667777 4688766554 45555444433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-10 Score=94.12 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC-Cccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI-PQANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~~~D~v~~~~vlh 183 (279)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++.+..++..... ..||+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35689999999999999988865 4458999999 888887764 2356777776643322 369999985433
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+....++.++.++|+ |||.+++...... ..+++.+.+++. |+.+
T Consensus 236 ----~~l~~ll~~~~~~Lk---pgG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVK---PGGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ----HHHHHHHHHHHHHcC---CCcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence 234678999999999 7999888653211 235667777766 8877
Q ss_pred EEEecCC
Q 023625 264 KITPMLG 270 (279)
Q Consensus 264 ~~~~~~~ 270 (279)
++.....
T Consensus 280 ~~~~~~~ 286 (288)
T TIGR00406 280 EIRQREE 286 (288)
T ss_pred eEeccCC
Confidence 7665443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=88.71 Aligned_cols=125 Identities=11% Similarity=0.220 Sum_probs=97.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC--ccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP--QANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~v~~~ 179 (279)
....+|||+|||+|..+..++++.+.++++++++ +.+.+.|++ ..+|++++..|+.. ..+ .||+|++.
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4488999999999999999999999999999999 888888874 47899999999976 122 48999985
Q ss_pred hhhccCChh----------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC
Q 023625 180 WILHNWNDE----------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG 243 (279)
Q Consensus 180 ~vlh~~~~~----------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 243 (279)
=..+..++. ....+++.+.+.|+ |||++.++-.. +
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk---~~G~l~~V~r~-----------e--------------- 173 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK---PGGRLAFVHRP-----------E--------------- 173 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc---CCCEEEEEecH-----------H---------------
Confidence 444433322 34678889999999 79998875421 0
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...|+.+++++.+|...++..+
T Consensus 174 ---rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ---RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ---HHHHHHHHHHhcCCCceEEEEe
Confidence 3458889999999887777554
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-10 Score=90.36 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=75.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C---CC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A---IP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~---~~--~~D~v~~~~ 180 (279)
...+|||||||+|.++..+++++|+..++++|+ +.+++.++. .-.+++++.+|+.+ + .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 12589999999864 1 23 488888754
Q ss_pred hhccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+ |+... ...++++++++|+ |||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lk---pgG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLK---KGGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhC---CCCEEEEEe
Confidence 332 22211 1468999999999 799988755
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=94.16 Aligned_cols=97 Identities=21% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh---
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW--- 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~--- 180 (279)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+. ..++++++.+|++++.+ .||+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 888888774 23689999999987554 599999741
Q ss_pred ----------hhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 ----------ILHNWND----------EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 ----------vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.+++.+. +....+++++.+.|+ |||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~---~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN---ENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 1111111 123678999999999 7997764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=84.87 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=93.5
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC--C-ccceeeehhhhc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI--P-QANAVLLKWILH 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~-~~D~v~~~~vlh 183 (279)
..+|||+|||+|+++..|++.--..+.+++|. +..++.|+. ..+.|+|+..|+.+|. + +||+|+-...+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 44999999999999999999875566899999 888887763 3456999999999852 2 588887654432
Q ss_pred c------CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH
Q 023625 184 N------WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA 257 (279)
Q Consensus 184 ~------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~ 257 (279)
. -.+......+..+.+.|+ |||.++|... .+|.+|+.+.++.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~---~~gifvItSC-----------------------------N~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLS---PGGIFVITSC-----------------------------NFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccC---CCcEEEEEec-----------------------------CccHHHHHHHHhc
Confidence 2 222233456788888888 7888877432 1288899999999
Q ss_pred CCCceeEEEecC
Q 023625 258 AGFSHYKITPML 269 (279)
Q Consensus 258 aGf~~~~~~~~~ 269 (279)
-||.....++.|
T Consensus 196 ~~f~~~~tvp~p 207 (227)
T KOG1271|consen 196 FNFEYLSTVPTP 207 (227)
T ss_pred CCeEEEEeeccc
Confidence 999988877765
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=87.23 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=73.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~v~~ 178 (279)
+.+..+|||+|||+|.++..+++.. +..+++++|+.++. .. .+++++.+|+.++ .+ .+|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PI-VGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CC-CCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4667899999999999999999986 45799999995432 22 4689999999873 22 4999998
Q ss_pred hhhhccCChh---------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWNDE---------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~~---------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+.|..... ....+|+++.++|+ |||.+++..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk---pGG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA---PGGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC---CCCEEEEEE
Confidence 7665543321 12468999999999 799988854
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=90.42 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=101.0
Q ss_pred HHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeE----
Q 023625 88 FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLD---- 160 (279)
Q Consensus 88 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~---- 160 (279)
|....+..+++... +++.+ ..++.+|+|+|||||.++++.++... .+++++|+ |..++.++.. ...+.
T Consensus 141 FGTG~HpTT~lcL~-~Le~~---~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 141 FGTGTHPTTSLCLE-ALEKL---LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred cCCCCChhHHHHHH-HHHHh---hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 54444444444443 34444 35789999999999999999888643 37999999 8888887742 12232
Q ss_pred EeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh
Q 023625 161 FLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238 (279)
Q Consensus 161 ~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 238 (279)
....+..+ +.. .||+|+.+= |- +-.+++...+.+.++ |||++++.... .+
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lk---pgg~lIlSGIl-~~------------------- 267 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLK---PGGRLILSGIL-ED------------------- 267 (300)
T ss_pred cccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcC---CCceEEEEeeh-Hh-------------------
Confidence 33333333 232 599998743 31 224688899999999 79988775532 11
Q ss_pred hhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEE
Q 023625 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIE 276 (279)
Q Consensus 239 ~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 276 (279)
..+.+.+.++++||.++++.....+.+++-
T Consensus 268 --------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~ 297 (300)
T COG2264 268 --------QAESVAEAYEQAGFEVVEVLEREEWVAIVG 297 (300)
T ss_pred --------HHHHHHHHHHhCCCeEeEEEecCCEEEEEE
Confidence 245678889999999999998888887764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=88.76 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=76.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI--- 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~--- 170 (279)
..+++.++ ..+..+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ ...+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 33555554 5678899999999999999998875 4578999999 888887764 1257999999987632
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..||+|++....+..+ +.+.+.|+ |||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lk---pgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLK---DGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhC---CCcEEEEE
Confidence 2599999987665433 34566799 79998875
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-10 Score=87.08 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=84.8
Q ss_pred EEeeC-hhHHhhcccC--------CCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCc
Q 023625 141 TVFDL-PHVVDNLQGT--------NDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 141 ~~~D~-~~~~~~a~~~--------~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
+++|. +++++.|++. ..+++++.+|..+ |.+ .||+|++..++|+++|. .+.|++++++|+ |||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLk---pGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLK---PGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcC---cCe
Confidence 47898 8999887531 2479999999987 655 49999999999998764 588999999999 799
Q ss_pred EEEEEeeecCCCCCCchhhhhhhhcchhhh-----hhc----------CCeeCCHHHHHHHHHHCCCceeEEEecCC
Q 023625 209 KVIIIDMAIENQSQDKESMETQLCFDILMV-----SLF----------RGKERSVDDWKKLFLAAGFSHYKITPMLG 270 (279)
Q Consensus 209 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~----------~~~~r~~~e~~~ll~~aGf~~~~~~~~~~ 270 (279)
++++.|...++....... .......... ... -....+.+|+.++|+++||+.++......
T Consensus 76 ~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 999999865443111000 0000000000 000 01234889999999999999888877653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=88.29 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=75.6
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---P 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 171 (279)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++ ..++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444444 56778999999999999999999865 467999998 888887764 1257999999997632 2
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++....+. +.+.+.+.|+ |||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~---~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLK---EGGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcC---cCcEEEEE
Confidence 5999998765543 3445678899 79998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=96.70 Aligned_cols=132 Identities=14% Similarity=0.330 Sum_probs=94.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh----
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW---- 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~---- 180 (279)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+. ..++++++.+|+++..+ .||+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888888774 24689999999987543 599999831
Q ss_pred ----------hhccCC------h----hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 181 ----------ILHNWN------D----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 181 ----------vlh~~~------~----~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
++.+.+ . +...++++++.+.|+ |||.+++ |.- . .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~---~gG~l~l-Eig--~---~----------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK---PNGKIIL-EIG--F---K----------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc---CCCEEEE-EEC--C---c-----------------
Confidence 111111 0 123467888899999 7998765 321 1 0
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEE
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEA 277 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~ 277 (279)
..+++.+++++.||..+++. +..+..-++.+
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 34567888899999877664 45555444433
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-09 Score=85.57 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=74.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC--ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP--QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh 183 (279)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++. ...+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 345689999999999999998876 3348999999 788876654 22368899999877433 599999863222
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 184 NWND-------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 184 ~~~~-------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.-++ .....+++++.+.|+ |||+++++..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk---~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA---PGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC---CCcEEEEEEecc
Confidence 1111 113568889999999 799998865433
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.7e-10 Score=92.25 Aligned_cols=98 Identities=16% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC-ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP-QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~-~~D~v~~~~ 180 (279)
++.++|||||||+|.++..+++.+|..+++++|+ |.+++.|++ ..+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999998874 13789999999854 233 599998742
Q ss_pred hhcc--CChh-HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHN--WNDE-ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~--~~~~-~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+. .+.. ....+++++++.|+ |||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~---pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALS---SDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcC---CCcEEEEE
Confidence 221 1111 12689999999999 79988774
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=85.42 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=74.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC---C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA---I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~-~~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..++++++.+|..+. . +.+|.+++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 45678999999999999999998889899999999 888887764 125799999988641 2 2356665421
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
......+++++.+.|+ |||++++...
T Consensus 118 ------~~~~~~~l~~~~~~Lk---pgG~li~~~~ 143 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLK---PGGRLVATAS 143 (196)
T ss_pred ------CcCHHHHHHHHHHhcC---CCeEEEEEee
Confidence 2235688999999999 7999888754
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=75.53 Aligned_cols=93 Identities=24% Similarity=0.396 Sum_probs=76.3
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc-----cCCCCeEEeeCCCCCCC----CccceeeehhhhccC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ-----GTNDNLDFLGGNMFEAI----PQANAVLLKWILHNW 185 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~ri~~~~~d~~~~~----~~~D~v~~~~vlh~~ 185 (279)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ....++++..+|+.+.. +++|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999999 66666655 12467899999998732 259999999999865
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+....+++++.+.++ |||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~---~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLK---PGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcC---CCCEEEEE
Confidence 5567899999999999 79988765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=79.82 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=103.4
Q ss_pred HHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhh----cchhhHHHHHHhchhhhCCCCEEEEecCCc
Q 023625 49 TAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMIT----DSELIAGIVIKDCKEVFEGLKSLVDVAGGT 124 (279)
Q Consensus 49 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~ 124 (279)
.-++.|.|.|-+.. + ..-++.+.++|+....|+...+. +-......+++.+. ..++...|.|+|||.
T Consensus 13 srFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT
T ss_pred CchHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCch
Confidence 34455666665442 1 12345566777766665554443 32233455565554 134457899999999
Q ss_pred cHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhC
Q 023625 125 GIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAI 201 (279)
Q Consensus 125 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L 201 (279)
+.++..+.+ ..++.-+|+-.. +-.++..|+.. |.+ ..|+++++..|..- +....|+++.|+|
T Consensus 84 A~la~~~~~---~~~V~SfDLva~---------n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvL 148 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP---------NPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVL 148 (219)
T ss_dssp -HHHHH--S------EEEEESS-S---------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHE
T ss_pred HHHHHhccc---CceEEEeeccCC---------CCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHhee
Confidence 999976542 357889997321 12356688866 765 49999998887642 3578999999999
Q ss_pred CCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 202 PSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 202 ~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
+ |||.+.|.|.... .-..+++.+.+++.||+.......+....+++++
T Consensus 149 K---~~G~L~IAEV~SR--------------------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 149 K---PGGILKIAEVKSR--------------------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp E---EEEEEEEEEEGGG---------------------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred c---cCcEEEEEEeccc--------------------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 9 7999999885321 0156788999999999998876666666666665
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-08 Score=83.37 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCCCC-----Cccceeeehhhh---
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFEAI-----PQANAVLLKWIL--- 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~~-----~~~D~v~~~~vl--- 182 (279)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++. ..++++..+|+++.. ..||+|++.=..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 8888887752 123688999987632 259999874211
Q ss_pred ---ccCChh------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc
Q 023625 183 ---HNWNDE------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF 241 (279)
Q Consensus 183 ---h~~~~~------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 241 (279)
+..+++ -...+++.+.+.|+ |||++++.-. . +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~---~gG~l~l~~~-~-~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA---PGGHLLVETS-E-R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC---CCCEEEEEEC-c-c----------------------
Confidence 111111 12478888889999 7998875321 0 0
Q ss_pred CCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 242 RGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 242 ~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
..+++.+++++.||+..-+.
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeE
Confidence 23467788899998755433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=80.06 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=75.7
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C--C--Cccceeeehhhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A--I--PQANAVLLKWIL 182 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~--~~~D~v~~~~vl 182 (279)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..++++++.+|+.+ . . ..||+|++.-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888887763 34789999999976 2 3 359999997666
Q ss_pred ccCCh------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWND------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.... +....+++++.+.|+ |||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~---~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLK---PGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcC---CCeEEEEEe
Confidence 54321 234688999999999 799888764
|
... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=84.06 Aligned_cols=107 Identities=19% Similarity=0.405 Sum_probs=79.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--------------------------
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-------------------------- 155 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------------------- 155 (279)
.+..++..+-....+|||||.+|.++..+++.+....++++|+ +..+..|++.
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 4444444456778999999999999999999998888999999 7777777620
Q ss_pred ---------------------CCCeEEeeCCCCC-CCCccceeeeh----hhhccCChhHHHHHHHHHHHhCCCCCCCcE
Q 023625 156 ---------------------NDNLDFLGGNMFE-AIPQANAVLLK----WILHNWNDEESVKLLKKCKEAIPSKDEGGK 209 (279)
Q Consensus 156 ---------------------~~ri~~~~~d~~~-~~~~~D~v~~~----~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ 209 (279)
..+..+...||.. ..+.||+|++- ||=-+|.|+-.+.+++++++.|. |||.
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~---pgGi 204 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH---PGGI 204 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC---cCcE
Confidence 1122333334443 24569999763 44446899999999999999999 6886
Q ss_pred EEE
Q 023625 210 VII 212 (279)
Q Consensus 210 lli 212 (279)
+++
T Consensus 205 Lvv 207 (288)
T KOG2899|consen 205 LVV 207 (288)
T ss_pred EEE
Confidence 654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.9e-09 Score=90.24 Aligned_cols=99 Identities=14% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC---CCC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE---AIP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~v~~~~v 181 (279)
....+||||||+|.++..+++++|+..++++|+ +.+++.+.. .-.++.++.+|... ..+ .+|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 456899999999999999999999999999999 777776642 12579999999743 333 4899987543
Q ss_pred hccCChhH-----HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEE-----SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~-----~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
. -|+... ...+|+.++++|+ |||.+.+...
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLk---pGG~l~l~TD 236 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLK---PGGTLELRTD 236 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcC---CCcEEEEEEE
Confidence 2 132221 1478999999999 7999888653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.6e-09 Score=82.13 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=70.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~v~~ 178 (279)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. .. .+++++.+|+.++ .+ .+|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PI-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cC-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4678899999999999999999887 56789999994432 22 5688888888652 22 4999998
Q ss_pred hhhhc---cCCh------hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILH---NWND------EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh---~~~~------~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
....| .|.. +...++|+++.++|+ |||++++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lvi~ 145 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK---PKGNFVVK 145 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc---CCCEEEEE
Confidence 53322 1111 223678999999999 79998875
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-08 Score=87.10 Aligned_cols=121 Identities=13% Similarity=0.019 Sum_probs=87.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..++.+|||+|||+|.++.+.+.. ..+++++|+ +.++..++.. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 466789999999999999887654 678999999 8888766631 1348899999987 543 5999998422
Q ss_pred hc-------cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 182 LH-------NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 182 lh-------~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
.. +...+...++|+++++.|+ |||+++++-. . ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk---~gG~lv~~~~---~----------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLK---SEGWIVYAVP---T----------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHcc---CCcEEEEEEc---C----------------------------CCCHHHH
Confidence 11 1122334689999999999 7999887542 1 1145577
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
++++|| +......
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 899999 7777654
|
This family is found exclusively in the Archaea. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=80.90 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=69.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---Cccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---PQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~~D~v~~~~v 181 (279)
..+..+|||||||+|..+..+++... +++++|. +.+++.+++ ...++++..+|..+.. ..||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7999998 788777764 1246999999987643 25999999876
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.+ .+++.+.|+ |||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~---~gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLK---EGGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcC---CCcEEEEEE
Confidence 6543 445678899 799988754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-09 Score=81.97 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC--CCeEEe-eCCCCCC--CCccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN--DNLDFL-GGNMFEA--IPQANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--~ri~~~-~~d~~~~--~~~~D~v~~~~vlh~~ 185 (279)
.+.+++||+|||||..+.+|...- -+.+++|+ ..|+++|.+.+ +....- ..+|... ...+|+|....||-.+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 457899999999999998887763 35789999 88999887531 111111 1124432 3359999999999888
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
.. ...++--+...|+ |||.+.+.-.-.++.... . ..... --..++.-++++++..||.++++
T Consensus 202 G~--Le~~~~~aa~~L~---~gGlfaFSvE~l~~~~~f------~-l~ps~------RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 202 GA--LEGLFAGAAGLLA---PGGLFAFSVETLPDDGGF------V-LGPSQ------RYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred cc--hhhHHHHHHHhcC---CCceEEEEecccCCCCCe------e-cchhh------hhccchHHHHHHHHhcCceEEEe
Confidence 77 3477888999999 799877755444433211 0 00000 01125566789999999999999
Q ss_pred Eec
Q 023625 266 TPM 268 (279)
Q Consensus 266 ~~~ 268 (279)
.++
T Consensus 264 ~~t 266 (287)
T COG4976 264 EDT 266 (287)
T ss_pred ecc
Confidence 765
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=80.49 Aligned_cols=130 Identities=19% Similarity=0.351 Sum_probs=89.9
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CC-CCeEEeeCCCCCCCC-ccceeeehh--hhcc--
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TN-DNLDFLGGNMFEAIP-QANAVLLKW--ILHN-- 184 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~~~~-~~D~v~~~~--vlh~-- 184 (279)
+|+|+|||||..++.++++.|++++++.|+ +.+++.|+. .. .++.++.+|.+++.. .||+|+++= +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 989988874 22 667777779998765 699998731 1111
Q ss_pred -CCh------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCee
Q 023625 185 -WND------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE 245 (279)
Q Consensus 185 -~~~------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 245 (279)
..+ +-..+++.++.+.|+ |||.++ +|.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~---~~g~l~-le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK---PGGVLI-LEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC---CCcEEE-EEECCC---------------------------
Confidence 000 134567777888888 555444 443211
Q ss_pred CCHHHHHHHHHHCC-CceeEEEe-cCCceeEEEE
Q 023625 246 RSVDDWKKLFLAAG-FSHYKITP-MLGVRSLIEA 277 (279)
Q Consensus 246 r~~~e~~~ll~~aG-f~~~~~~~-~~~~~~~i~~ 277 (279)
..+++.+++.+.| |..+.+.+ ..+..-++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3567889999999 66555544 3444444433
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=85.61 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------CCCCeEEeeCCCCC--C--CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------TNDNLDFLGGNMFE--A--IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~--~--~~~~D~v 176 (279)
+..++||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|... . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4567999999999999999998655668999999 899988874 14689999999865 2 2359999
Q ss_pred eehhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 177 LLKWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 177 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++...-+.-+... ...+++.+++.|+ |||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~---~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALK---EDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcC---CCcEEEE
Confidence 9854322212211 2577899999999 7997775
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-08 Score=78.63 Aligned_cols=118 Identities=18% Similarity=0.337 Sum_probs=90.5
Q ss_pred HHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHH-HCCCCeEEEeeC-hhHHhhccc------C
Q 023625 88 FYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIAT-AFPDIKCTVFDL-PHVVDNLQG------T 155 (279)
Q Consensus 88 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~ 155 (279)
|...|...++.. +..|+.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. +...+.|++ .
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence 333455444432 223444443 78899999999999999999997 567789999999 888888874 4
Q ss_pred CCCeEEeeCCCCCC-CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 156 NDNLDFLGGNMFEA-IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 156 ~~ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.+++++..+|+.+. .+ .+|++++ +++++. ..|.++.++|+ |||.+++..+..
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lk---pgg~~~~y~P~v 198 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALK---PGGVVVVYSPTV 198 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhC---CCcEEEEEcCCH
Confidence 57799999999884 33 6999998 667764 78999999999 799998876544
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-08 Score=86.30 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCC--C-C-Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFE--A-I-PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~--~-~-~~~D 174 (279)
....+||+||||.|..+.++++..+..+++++|+ +.+++.|+. ..+|++++.+|..+ . . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999999998666678999999 889998884 14799999999875 2 2 2599
Q ss_pred eeeehhhhc---cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 175 AVLLKWILH---NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 175 ~v~~~~vlh---~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+|++-..-. ....--...+++.+++.|+ |||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk---PgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLT---EDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcC---CCcEEEEe
Confidence 999853100 0111123568999999999 79987764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=79.53 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCEEEEecCCccH----HHHHHHHHCC----CCeEEEeeC-hhHHhhccc------------------------------
Q 023625 114 LKSLVDVAGGTGI----MARAIATAFP----DIKCTVFDL-PHVVDNLQG------------------------------ 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 154 (279)
.-+|...||+||. +++.+.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 3444444432 467999999 888888762
Q ss_pred ------CCCCeEEeeCCCCC-CCC---ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 155 ------TNDNLDFLGGNMFE-AIP---QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~-~~~---~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
...+|+|..+|+.+ +.+ .||+|+++++|.+++++...+++++++++|+ |||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~---pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK---PDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC---CCcEEEE
Confidence 02567899999988 433 5999999999999999999999999999999 7997765
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=77.39 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=76.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---------CCcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---------IPQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~ 173 (279)
..+.++|||||||+|.-+..+++..| +.+++.+|. ++.++.|++ ..++++++.+|..+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998865 679999999 888887774 357899999998752 1359
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+|++- -..+.-..++..+.+.|+ |||.|++-+..+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~---~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVK---VGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC---CCeEEEEEcCCc
Confidence 999883 233455688999999999 788666544433
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=76.22 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=69.0
Q ss_pred CCEEEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceeeehhhhccCCh
Q 023625 114 LKSLVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWND 187 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~ 187 (279)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|++.=..+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 3568999999 89999998765789999999986 333 5999998544442221
Q ss_pred ----------hHHHHHHHHHHHhCC
Q 023625 188 ----------EESVKLLKKCKEAIP 202 (279)
Q Consensus 188 ----------~~~~~~L~~~~~~L~ 202 (279)
.-...++.++.+.++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~ 154 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIAR 154 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcC
Confidence 113458888888666
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=79.72 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEE-eeC-CCCC----CC---C-ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDF-LGG-NMFE----AI---P-QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~-~~~-d~~~----~~---~-~~D~v~~~~v 181 (279)
+.+.++|||||+|..++.+++.+. ++++.|. +.+++.+++. .+++. ... .+.+ ++ + +.|+|++..+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 445899999999988888888765 4899999 9999998864 22221 111 2221 11 2 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|-+.- .++.+.++++||+ +||.+++...
T Consensus 110 ~HWFdl---e~fy~~~~rvLRk--~Gg~iavW~Y 138 (261)
T KOG3010|consen 110 VHWFDL---ERFYKEAYRVLRK--DGGLIAVWNY 138 (261)
T ss_pred HHhhch---HHHHHHHHHHcCC--CCCEEEEEEc
Confidence 996544 4789999999996 6777766553
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-08 Score=94.00 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=55.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------------------CCCeEEeeCCCCCCCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------------------NDNLDFLGGNMFEAIP 171 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~ri~~~~~d~~~~~~ 171 (279)
..+|+|+|||+|..++.+++++|..+++++|+ +.+++.|+.. .+|++|+.+|++++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999999999999 8888777421 1489999999988542
Q ss_pred ----ccceeeeh
Q 023625 172 ----QANAVLLK 179 (279)
Q Consensus 172 ----~~D~v~~~ 179 (279)
.+|+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 48998873
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=81.68 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=70.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~~D~v~~~~ 180 (279)
..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++ ..+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 456789999999999999999998764 47999999 888877763 1357999999986632 3599999876
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+++. ...+.+.|+ |||++++..
T Consensus 158 g~~~i--------p~~~~~~Lk---pgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLK---EGGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcC---CCCEEEEEe
Confidence 55433 234567899 799988754
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.2e-08 Score=81.86 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC--Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI--PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D~v 176 (279)
++.++||+||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|... .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987633468999999 778888775 14699999999753 23 259999
Q ss_pred eehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 177 LLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 177 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++-..-+.-+.. -...+++.+++.|+ |||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~---pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALR---PGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcC---CCcEEEE
Confidence 984332211111 13478999999999 7998765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=86.83 Aligned_cols=98 Identities=15% Similarity=0.334 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccC------------CCCeEEeeCCCCCC---C-Ccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGT------------NDNLDFLGGNMFEA---I-PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------------~~ri~~~~~d~~~~---~-~~~ 173 (279)
++.++|||||||+|..+.++++ +|. .+++++|+ +++++.+++. .+|++++.+|..+- . ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999997 455 79999999 9999988751 36899999998761 2 369
Q ss_pred ceeeehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 174 NAVLLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 174 D~v~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|+|++...-...+.. -..++++++++.|+ |||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~---pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA---PDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcC---CCeEEEEe
Confidence 999986432211110 12357899999999 79987764
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=72.62 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=106.9
Q ss_pred hhhhhcCchHHHHHHHHhhhc----chhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHh
Q 023625 75 WDRVADEPKFKSLFYDLMITD----SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVD 150 (279)
Q Consensus 75 ~~~~~~~~~~~~~f~~~m~~~----~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 150 (279)
++.+.++|.....|+...+.. -.-....+++.+. .-+....|.|+|||.+.++. .-..++..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh-----ccccceeeeeeec---
Confidence 455667777666666555432 1122345665554 13456789999999999876 1224688888632
Q ss_pred hcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh
Q 023625 151 NLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227 (279)
Q Consensus 151 ~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~ 227 (279)
.+-.++..|+.. |.+ +.|+++++..|.. .+...++++++++|+ |||.++|.|.-..
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk---~gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILK---PGGLLYIAEVKSR--------- 268 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhc---cCceEEEEehhhh---------
Confidence 234456778877 655 5899988877753 235678999999999 7999999884211
Q ss_pred hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 228 ~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+. +...+.+.+...||.+......+....++++++
T Consensus 269 ----f~-------------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 ----FS-------------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----cc-------------cHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11 445688889999999887777777777777653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.2e-08 Score=75.09 Aligned_cols=89 Identities=18% Similarity=0.382 Sum_probs=64.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~D 174 (279)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++. .++++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 3555554 556789999999999999999998 468999999 7788777642 3589999999987 544 388
Q ss_pred eeeehhhhccCChhHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLK 195 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~ 195 (279)
.|++.-.. +.+.+...++++
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLE 99 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHh
Confidence 88775444 344444334443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-07 Score=75.24 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=90.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~ 190 (279)
...++||||.|.|..+..++..+.+ +.+.+. +.|....++. .++++..|-....+ .||+|.+.++|-.-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k--g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK--GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC--CCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 4578999999999999999988766 677777 6666555542 34444443333223 59999999999655554
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCC------C--CCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQ------S--QDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~~~~~~------~--~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
..+|++++++|+ |+|++++.= ++|-. . ...|. + ..++ ....-+-....+.+.|+.+||++
T Consensus 168 ~~LL~~i~~~l~---p~G~lilAv-VlP~~pyVE~~~g~~~~P~-e---~l~~----~g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 168 LTLLRDIRRALK---PNGRLILAV-VLPFRPYVEFGGGKSNRPS-E---LLPV----KGATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred HHHHHHHHHHhC---CCCEEEEEE-EecccccEEcCCCCCCCch-h---hcCC----CCCcHHHHHHHHHHHHHhcCCEE
Confidence 589999999999 788776543 33321 1 00010 0 1111 00111113344558899999999
Q ss_pred eEEEecCC
Q 023625 263 YKITPMLG 270 (279)
Q Consensus 263 ~~~~~~~~ 270 (279)
.+....|.
T Consensus 236 ~~~tr~PY 243 (265)
T PF05219_consen 236 ERWTRLPY 243 (265)
T ss_pred EEEeccCc
Confidence 99988764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=80.51 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC---C-CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE---A-IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~---~-~~~~D~v~~ 178 (279)
..++||+||||+|..+..+++..+..+++++|+ +.+++.+++. .++++++.+|..+ . ...||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999998766678999999 8888877641 3688888888765 1 235999998
Q ss_pred hhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...-+.-+... ...+++++++.|+ |||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~---pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALN---EDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhC---CCcEEEEc
Confidence 65432222222 3578899999999 79988875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-08 Score=77.87 Aligned_cols=98 Identities=14% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCEEEEecCCccH----HHHHHHHHC----C-CCeEEEeeC-hhHHhhccc----------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAF----P-DIKCTVFDL-PHVVDNLQG---------------------------- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 154 (279)
+.-+|..+||++|. +++.+.+.. + ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997 333344411 2 468999999 888988862
Q ss_pred -----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 155 -----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 155 -----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...+|+|..+|+.+ +.+ .+|+|++++||-.++++...+++++++++|+ |||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~---pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK---PGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE---EEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC---CCCEEEEe
Confidence 13689999999998 322 5999999999999999999999999999999 79988773
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.9e-08 Score=77.66 Aligned_cols=101 Identities=14% Similarity=0.265 Sum_probs=72.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP-- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-- 171 (279)
..+++.++ +.+..+|||||||+|..+..+++.. +.-+++.+|. +...+.|++ ...++.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34566665 6788999999999999999999875 3446899998 888888774 23589999999876443
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||.|++.......+. .+.+.|+ +||++++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~---~gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLK---PGGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEE---EEEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcC---CCcEEEEEE
Confidence 4999999887754443 3455678 799988743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=76.25 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=76.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-C---
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-I--- 170 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-~--- 170 (279)
|+..++ ..++.+|||.|.|+|.++..|++. .|.-++.-+|. ++..+.|++ ..+++++...|+.+. +
T Consensus 32 I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 444444 788999999999999999999974 58889999999 888888774 457899999999642 2
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhC-CCCCCCcEEEEEeeec
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAI-PSKDEGGKVIIIDMAI 217 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L-~~~~pgG~lli~e~~~ 217 (279)
..+|.|++ |++++. ..+..+.++| + |||++.+.-+++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~---~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKK---PGGRICCFSPCI 149 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-E---EEEEEEEEESSH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhc---CCceEEEECCCH
Confidence 24899988 667664 5689999999 7 799998876544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-07 Score=75.06 Aligned_cols=97 Identities=15% Similarity=0.306 Sum_probs=80.8
Q ss_pred CCCEEEEecCCccH----HHHHHHHHCC-----CCeEEEeeC-hhHHhhccc----------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAFP-----DIKCTVFDL-PHVVDNLQG---------------------------- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 154 (279)
+.-+|.-+||+||. +++.+.+..| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36689999999996 6666777776 478999999 888888762
Q ss_pred ------CCCCeEEeeCCCCCC--CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 155 ------TNDNLDFLGGNMFEA--IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~~--~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
....|.|..+|+.++ .+ .+|+|++++||=.++.+.-.+++++.+..|+ |||.|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~---~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK---PGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC---CCCEEEE
Confidence 134689999999984 33 4999999999999999999999999999999 7998877
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-07 Score=72.81 Aligned_cols=99 Identities=10% Similarity=0.202 Sum_probs=76.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC---c
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP---Q 172 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~---~ 172 (279)
.+++.+. ..+..+|||||||+|..+.-|++.-. +++.+++ ++..+.|++ . -.+|.+..+|-..-++ .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3555554 67889999999999999999998754 7889998 777787874 1 2469999999988443 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
||.|+.....-..|+. +.+.|+ +||++++...
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~---~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLK---PGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhcc---cCCEEEEEEc
Confidence 9999998777655552 345578 7999998665
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=82.22 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=77.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC---C-C-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA---I-P-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~-~-~~D~v~~~~ 180 (279)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ...+++++.+|..+. . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 888877764 233578999998762 1 2 499998522
Q ss_pred ------hhc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ------ILH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 ------vlh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++. ...+++ ..++|+++.+.|+ |||++++....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk---pGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK---PGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 111 112222 2478999999999 799998877433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-07 Score=82.15 Aligned_cols=106 Identities=13% Similarity=0.217 Sum_probs=77.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC----Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI----PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~----~~~D~v~~ 178 (279)
..++.+|||+|||+|..+..+++..+..+++++|. +..++.+++ ...++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34678999999999999999999988789999999 888877653 11234447777654 21 24999986
Q ss_pred h------hhhccCCh-------hH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 179 K------WILHNWND-------EE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 179 ~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
- .+++..++ ++ ..++|+++.+.|+ |||++++....+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk---pgG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK---TGGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEeCCCCh
Confidence 2 35554443 11 3689999999999 79999988765543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-07 Score=66.66 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred CCCEEEEecCCccH-HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC----ccceeeehhhhccCC
Q 023625 113 GLKSLVDVAGGTGI-MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP----QANAVLLKWILHNWN 186 (279)
Q Consensus 113 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~v~~~~vlh~~~ 186 (279)
...+|+|||||+|. ++..|.+. +..++++|+ +..++.+++. .++++.+|+++|-+ ++|+|++.+ +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~~a~liysir-----p 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYKNAKLIYSIR-----P 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHhcCCEEEEeC-----C
Confidence 35789999999996 77777765 578999999 8888888764 57999999999643 599999865 5
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.+...-+.++++... .-++|.-
T Consensus 87 p~el~~~~~~la~~~~-----~~~~i~~ 109 (134)
T PRK04148 87 PRDLQPFILELAKKIN-----VPLIIKP 109 (134)
T ss_pred CHHHHHHHHHHHHHcC-----CCEEEEc
Confidence 6666777777777765 4455543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.3e-07 Score=81.17 Aligned_cols=103 Identities=15% Similarity=0.238 Sum_probs=75.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC---CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA---IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~---~~-~~D~v~~~ 179 (279)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ . ..+++++.+|+.+. .+ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 3566899999999999999999986 6779999999 888877653 1 14589999998762 33 59999873
Q ss_pred hh------hc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WI------LH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~v------lh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
-. +. .+++++ ...+|+++.+.|+ |||+++.....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk---pGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK---KGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC---CCCEEEEEcCC
Confidence 21 11 112222 2468999999999 79998865543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-07 Score=67.27 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=93.5
Q ss_pred chhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-C---
Q 023625 96 SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A--- 169 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~--- 169 (279)
+.++++.+++.++ +..+.-|+++|.|+|.++.+++++. +....+.++. ++......+.-+.+.++.||.+. .
T Consensus 33 Ss~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 4556666777776 5677899999999999999999875 4456778877 77777666655778899999876 2
Q ss_pred --C--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 170 --I--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 170 --~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
. +.+|.|++.-.+-.++....+++|+.+..-|+ +||.++.+..-
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~---~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP---AGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC---CCCeEEEEEec
Confidence 1 24999999999999999999999999999999 78988876654
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=75.75 Aligned_cols=141 Identities=18% Similarity=0.328 Sum_probs=80.4
Q ss_pred CCCEEEEecCCccH--HHHHHH-HHCCCCeEEEeeC-hhHHhhccc---CCCC--eEEeeCCCCCCC-----C---c-cc
Q 023625 113 GLKSLVDVAGGTGI--MARAIA-TAFPDIKCTVFDL-PHVVDNLQG---TNDN--LDFLGGNMFEAI-----P---Q-AN 174 (279)
Q Consensus 113 ~~~~vlDvG~G~G~--~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~---~~~r--i~~~~~d~~~~~-----~---~-~D 174 (279)
+...+||+|||-=. ..-+++ +..|+++++.+|. |-++..++. ..++ ..++.+|+.+|- | + .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999542 333444 4579999999999 888887774 2234 899999998741 1 1 23
Q ss_pred -----eeeehhhhccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCH
Q 023625 175 -----AVLLKWILHNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSV 248 (279)
Q Consensus 175 -----~v~~~~vlh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~ 248 (279)
.+++..+||+++| ++...+++.++++|. ||+.|+|.....+.. +. ......+.+-........|+.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la---pGS~L~ish~t~d~~----p~-~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA---PGSYLAISHATDDGA----PE-RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS----TT-EEEEEEEB-TTS----HH-HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC---CCceEEEEecCCCCC----HH-HHHHHHHHHHcCCCCceecCH
Confidence 6788999999988 788999999999999 688877776654321 11 111122222222334778899
Q ss_pred HHHHHHHHHCCCcee
Q 023625 249 DDWKKLFLAAGFSHY 263 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~ 263 (279)
+|+.++|. ||..+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999987 67654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8e-07 Score=80.48 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=76.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC--ccceeeeh--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP--QANAVLLK-- 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~--~~D~v~~~-- 179 (279)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ . ..+++++.+|..+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34568999999999999999988764 458999999 888877763 1 2468999999876222 59999862
Q ss_pred ----hhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 180 ----WIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 180 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.++ ..+++++ -.++|.++.+.|+ |||++++....+.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk---pgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK---PGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEeCCCC
Confidence 111 1233332 2468999999999 7999998775443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=69.89 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=67.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCC------C-ccce
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAI------P-QANA 175 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~-~~D~ 175 (279)
.....+|||+|||+|..++.+++..+..+++..|.+++++..+. ...++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999999877789999999667765542 2467888888876522 2 4999
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+.+.++++ ++....+++-+.+.++ |+|.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~---~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLK---PNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBT---T-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhC---CCCEEEEEeCEe
Confidence 999999984 5677889999999999 577777665544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-07 Score=72.45 Aligned_cols=93 Identities=18% Similarity=0.335 Sum_probs=68.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC----CC--ccceeeehhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA----IP--QANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~v~~~~v 181 (279)
...+||||||.|.++..+++.+|+..++++|+ ...+..+.. .-.++.++.+|...- ++ ..|-|++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 34899999999999999999999999999999 666665542 247999999998761 22 36666553
Q ss_pred hccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+||+ -...+|+.+++.|+ |||.|.+..
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~---~gG~l~~~T 133 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLK---PGGELYFAT 133 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcC---CCCEEEEEe
Confidence 2333 12478999999999 799988765
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=78.79 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------------CCCeEEeeCCCCCC-----C-
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------------NDNLDFLGGNMFEA-----I- 170 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~ri~~~~~d~~~~-----~- 170 (279)
+..+|||+|||.|.-+....+... ..++++|+ +..++.|++. .-...|+.+|.+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999998888877643 37999999 7778777630 12346788888752 1
Q ss_pred -C--ccceeeehhhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 171 -P--QANAVLLKWILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 171 -~--~~D~v~~~~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ .||+|-+...||.. +.+.+..+|+++.+.|+ |||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk---~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK---PGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC---CCCEEEEEe
Confidence 2 59999999999983 56677789999999999 799887654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=73.71 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=77.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C------Ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I------PQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 173 (279)
..+.++|||||+++|..+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+- . ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999999876 568999999 877887764 457999999998651 1 259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+|++- -+..+-...++.+.+.|+ |||.|++-+..+
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~---~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVR---VGGVIVMDNVLW 231 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC---CCcEEEEecCcc
Confidence 999984 345667889999999999 688665544433
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=78.13 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=77.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C----C--Ccccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A----I--PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~----~--~~~D~v 176 (279)
..++.+|||+|||+|..+..+++... ..+++++|+ +..++.+++ . ..+++++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 34678999999999999999999864 468999999 888877663 1 2468999999875 2 1 249999
Q ss_pred eeh------hhhccCCh-------hH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 177 LLK------WILHNWND-------EE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 177 ~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++- .+++..++ ++ -.++|+++.+.|+ |||+++.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk---pgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK---PGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 972 24443332 22 3688999999999 799998866443
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=75.43 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=75.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-------CCcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-------IPQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-------~~~~ 173 (279)
..+.++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ ..+||+++.+|..+ + ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34678999999999999999999987 589999999 888888874 35799999999864 1 1259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+|++-. ...+-...+..+.+.|+ |||.|++-+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~---~ggvii~DN~ 156 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLR---PGGVIIADNV 156 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEE---EEEEEEEETT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhcc---CCeEEEEccc
Confidence 9999843 45667788999999999 5665554443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=73.64 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCccce
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQANA 175 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~~D~ 175 (279)
..+++... ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .++++++.+|+.+ +.+.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555443 4567899999999999999999983 57999999 7888777642 3689999999988 6677898
Q ss_pred eeehhhhccCChh
Q 023625 176 VLLKWILHNWNDE 188 (279)
Q Consensus 176 v~~~~vlh~~~~~ 188 (279)
|++.-.. +++.+
T Consensus 95 Vv~NlPy-~i~s~ 106 (258)
T PRK14896 95 VVSNLPY-QISSP 106 (258)
T ss_pred EEEcCCc-ccCcH
Confidence 8775443 44433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-06 Score=77.08 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=76.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~~-~~D~v~~~ 179 (279)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++. ..+++++.+|... + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999986 4578999999 8888777631 2458899999865 2 12 49999862
Q ss_pred ------hhhc-------cCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 180 ------WILH-------NWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 180 ------~vlh-------~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.++. .++.+ .-.++|.++.+.|+ |||.++.....+.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk---pGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE---KGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEECCCC
Confidence 1222 12221 22678999999999 7998877665443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-07 Score=75.04 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCCcc--c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIPQA--N 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~~~--D 174 (279)
..+++.+. ..+..+|||||||+|.++..++++.+ +++++|+ +.+++.+++. .++++++.+|+.+ +.+.. |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 33444443 45678999999999999999999975 7999999 8888887752 2689999999987 44443 5
Q ss_pred eeeehhhhccCCh
Q 023625 175 AVLLKWILHNWND 187 (279)
Q Consensus 175 ~v~~~~vlh~~~~ 187 (279)
.|+. +.-++.+.
T Consensus 108 ~vv~-NlPY~iss 119 (272)
T PRK00274 108 KVVA-NLPYNITT 119 (272)
T ss_pred eEEE-eCCccchH
Confidence 5544 33343433
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.4e-06 Score=71.94 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=75.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C--CCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A--IPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~--~~~~D~v~~~~ 180 (279)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++ . ..+++++..|... + .+.||+|++--
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35678999999999999999999875 358999999 888776653 1 2468888888654 2 23599998621
Q ss_pred ------hhc-------cCChhHH-------HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ------ILH-------NWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 ------vlh-------~~~~~~~-------~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++. .|++++. .++|+++.+.|+ |||+|+.....+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk---pgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK---PGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 221 2333322 569999999999 799988765443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=72.56 Aligned_cols=90 Identities=13% Similarity=0.279 Sum_probs=63.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCccc-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQAN- 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~~D- 174 (279)
..+++..+ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++.. .++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34555444 45678999999999999999999986 4889998 7777776642 3689999999987 555566
Q ss_pred -eeeehhhhccCChhHHHHHHHHHH
Q 023625 175 -AVLLKWILHNWNDEESVKLLKKCK 198 (279)
Q Consensus 175 -~v~~~~vlh~~~~~~~~~~L~~~~ 198 (279)
.+++++.-++++. .++.++.
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll 115 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLL 115 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHh
Confidence 3334444444444 4444444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-06 Score=63.55 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=54.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~v~~~ 179 (279)
.+++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++ ...+++|+..|..+....+|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 4678999999999999988877654 8999999 999988875 3468999999987655567777764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-06 Score=72.96 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEee----CCCCCCC----Ccccee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLG----GNMFEAI----PQANAV 176 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~d~~~~~----~~~D~v 176 (279)
...++||||||+|.....++.+.+++++++.|+ +.+++.|+. ..++|++.. .+++... ..||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888889999999999 888888773 346787754 2334321 249999
Q ss_pred eehhhhccCChhH---HHHHHHHHH----------------HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch-h
Q 023625 177 LLKWILHNWNDEE---SVKLLKKCK----------------EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI-L 236 (279)
Q Consensus 177 ~~~~vlh~~~~~~---~~~~L~~~~----------------~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~ 236 (279)
++.=.+|.-..+. ...-.++.+ +.+. +||.+-++..+..+.. .+..- .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~---~GGe~~fi~~mi~eS~---------~~~~~~g 261 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWC---EGGEVAFIKRMIEESK---------AFAKQVL 261 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheee---CCcEeeeehHhhHHHH---------HHHhhCc
Confidence 9977776433331 112222222 2222 3555555554443321 01010 1
Q ss_pred hhhhcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 237 MVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 237 ~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.....-|+.-+.+.+.+.|++.|.+.+.+..+
T Consensus 262 wftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 262 WFTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11111255568999999999999987777665
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.4e-06 Score=65.76 Aligned_cols=122 Identities=14% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCC-----ccceeeehhhhccCCh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIP-----QANAVLLKWILHNWND 187 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~-----~~D~v~~~~vlh~~~~ 187 (279)
.-++|||||=+....+. .++-..++-+|+.+. .-.+...||++ |.| .||+|.++.||...|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 36999999976665433 345567888998431 22345678887 665 3999999999999885
Q ss_pred -hHHHHHHHHHHHhCCCCCCCcE-----EEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 188 -EESVKLLKKCKEAIPSKDEGGK-----VIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 188 -~~~~~~L~~~~~~L~~~~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
.+.-++|+++++.|+ |+|. ++|+- |.+. ..+++..+.+.|.++++.-||.
T Consensus 120 p~~RG~Ml~r~~~fL~---~~g~~~~~~LFlVl---P~~C------------------v~NSRy~~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLK---PPGLSLFPSLFLVL---PLPC------------------VTNSRYMTEERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHHHHHHHhC---CCCccCcceEEEEe---CchH------------------hhcccccCHHHHHHHHHhCCcE
Confidence 566799999999999 6787 66653 2211 1345556889999999999999
Q ss_pred eeEEEecCCc
Q 023625 262 HYKITPMLGV 271 (279)
Q Consensus 262 ~~~~~~~~~~ 271 (279)
.++....+..
T Consensus 176 ~~~~~~~~Kl 185 (219)
T PF11968_consen 176 RVKYKKSKKL 185 (219)
T ss_pred EEEEEecCeE
Confidence 9888766543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=69.16 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=79.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEee-CCCCC---C--CCcccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLG-GNMFE---A--IPQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~d~~~---~--~~~~D~v 176 (279)
..+.++||+||.+.|.-++.++...| +.+.+.+|. ++..+.|++ ..++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999999 789999999 889988884 467888888 57665 2 2369999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|+- -...+-...|..+.+.|+ ||| ++++|.+...
T Consensus 137 FID-----adK~~yp~~le~~~~lLr---~GG-liv~DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLR---PGG-LIVADNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhC---CCc-EEEEeecccC
Confidence 983 345566789999999999 577 4555555544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.6e-07 Score=70.38 Aligned_cols=94 Identities=11% Similarity=0.228 Sum_probs=68.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CC--ccceeeehhhhc-----
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IP--QANAVLLKWILH----- 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~--~~D~v~~~~vlh----- 183 (279)
..-|||||||+|..+..+.+. +...+++|+ |.|++.|.+..-.-.++.+|+-+. ++ .||.+|+...+.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 678999999999998877764 578999999 999999885211245777888774 32 499988765542
Q ss_pred ----cCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 184 ----NWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 184 ----~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+.+......++..++.+|+ +|++.++
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~---rg~raV~ 158 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLK---RGARAVL 158 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhc---cCceeEE
Confidence 1233455667888999999 6887665
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=71.12 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
.+.|||||||+|.++.-.+++.. -++..++..++.+.|+. ..+||.++.|.+.+ ..| .+|++++--.=..+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 57899999999999987777643 37888888888888874 47999999999988 778 59999874332333
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
-.+...+-.-.+++-|+ |.|+++
T Consensus 257 ~NERMLEsYl~Ark~l~---P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLK---PNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcC---CCCccc
Confidence 34444455556779999 688765
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-06 Score=73.12 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCCC---C-Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFEA---I-PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~---~-~~~D~v~ 177 (279)
+..++||.||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|...- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3467999999999999999998766778999999 999998874 147999999998762 2 2599999
Q ss_pred ehhhhccCC--hh---HHHHHHH-HHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWN--DE---ESVKLLK-KCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~--~~---~~~~~L~-~~~~~L~~~~pgG~lli 212 (279)
+-. ...+. +. -...+++ .+++.|+ |||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~---p~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLN---PGGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcC---CCcEEEE
Confidence 852 11110 00 0235677 7899999 7887655
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=68.11 Aligned_cols=109 Identities=12% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------------CCCCeEEeeCCCC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------------TNDNLDFLGGNMF 167 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d~~ 167 (279)
+++.+. +.+...++|+|||.|......+...+--+++++++ +...+.|+. ...++++..+||.
T Consensus 34 il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 34 ILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 444444 66788999999999999998887776555999998 655544431 1467899999998
Q ss_pred C-CC-----CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 168 E-AI-----PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 168 ~-~~-----~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+ +. ..+|+|++.+.+ ++++ ...-|.+....|| +|.+|+-.....+.
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk---~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELK---PGARIISTKPFCPR 163 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS----TT-EEEESS-SS-T
T ss_pred ccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCC---CCCEEEECCCcCCC
Confidence 7 32 369999998875 4554 4555677778888 68777765555544
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=76.73 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=64.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCC-----C--Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEA-----I--PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~-----~--~~~D~v~ 177 (279)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++. .++++++.+|+.+. . ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3456799999999999999999875 58999999 8888887741 25799999998642 2 2489998
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+. -|-.....+++.+.+ ++ |++.+++
T Consensus 373 ~d-----PPr~g~~~~~~~l~~-~~---~~~ivyv 398 (443)
T PRK13168 373 LD-----PPRAGAAEVMQALAK-LG---PKRIVYV 398 (443)
T ss_pred EC-----cCCcChHHHHHHHHh-cC---CCeEEEE
Confidence 72 222223345555555 46 5665555
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=76.24 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=79.5
Q ss_pred ChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhh--CCCCEEEEecCCccHHHHHHHHHC----CCCeEEEeeC-
Q 023625 73 KVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF--EGLKSLVDVAGGTGIMARAIATAF----PDIKCTVFDL- 145 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 145 (279)
..|+.+++|+..-..|.+|+.. .+.+...... .....|+|||||+|-++...+++. -..++..++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3478888888877777777543 1222111000 125689999999999988776654 3468999997
Q ss_pred hhHHhhcc------cCCCCeEEeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 146 PHVVDNLQ------GTNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 146 ~~~~~~a~------~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+.++...+ ...++|+++.+|+.+ ..| .+|+|++-..=.....+-....|....+.|+ |||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk---p~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLK---PDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEE---EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcC---CCCEEe
Confidence 54443321 236899999999998 556 6999987543221222344566888888999 677543
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.2e-06 Score=69.55 Aligned_cols=97 Identities=14% Similarity=0.284 Sum_probs=75.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CCC-ccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AIP-QANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~v~~ 178 (279)
..++||-||||.|..+.++++..+-.+++.+|+ +.+++.+++ ..+|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999998889999999 999998884 14899999999876 233 5999998
Q ss_pred hhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
-..=. ..+. -...+++.++++|+ ++|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~---~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALK---EDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcC---CCcEEEEe
Confidence 43211 0110 12578999999999 68876665
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=71.43 Aligned_cols=89 Identities=15% Similarity=0.319 Sum_probs=65.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQ 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~ 172 (279)
..+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555443 5567899999999999999999874 46899999 788877663 13689999999987 5667
Q ss_pred cceeeehhhhccCChhHHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L 194 (279)
+|+++. +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 887765 444556665555555
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=69.08 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C-------Cc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I-------PQ 172 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 172 (279)
..+.++||+||.++|.-+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999999874 679999999 777777763 46899999999865 2 1 35
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
||+|++-. ....-...++.+.+.|+ |||.| ++|.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~---~GGvi-v~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVK---VGGVI-GYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcC---CCeEE-EEcCCC
Confidence 99999843 45566788889999999 67764 445443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=63.59 Aligned_cols=125 Identities=13% Similarity=0.237 Sum_probs=86.7
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--c-cceeeehhhhccCC
Q 023625 117 LVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--Q-ANAVLLKWILHNWN 186 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~-~D~v~~~~vlh~~~ 186 (279)
|.||||-+|.+.+.|+++..--+++..|+ +.-++.|++ +.+++++..+|-+++++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988888999999 888888774 46899999999888644 3 788887653 4
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
-....++|.+....++ ...++++ .++. ....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~---~~~~lIL-qP~~-----------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLS---SAKRLIL-QPNT-----------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGT---T--EEEE-EESS------------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhc---cCCeEEE-eCCC-----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 4567788888877776 2334433 2211 45678999999999987654
Q ss_pred ec---CCceeEEEEe
Q 023625 267 PM---LGVRSLIEAY 278 (279)
Q Consensus 267 ~~---~~~~~~i~~~ 278 (279)
-+ ..++.||.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 33 3455666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=64.96 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCC---C-ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAI---P-QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~---~-~~D~v~~~~vl 182 (279)
...+|||+|||+|.++.+++.+.. .+++++|. +..++.+++ . ..+++++.+|+.+.. . .||+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 58999999 888776663 1 257999999987622 2 49999985432
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
+. .....++..+.+ .++ |++ ++++++.
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~---~~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLA---DEA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcC---CCc-EEEEEec
Confidence 21 112234444443 366 555 5555543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=67.94 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=74.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------C----CCCeEEeeCCCCCC---------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------T----NDNLDFLGGNMFEA--------- 169 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~ri~~~~~d~~~~--------- 169 (279)
.++...++|+|||-|.-++..-++.- -.+++.|+ .-.++.|+. . .=...|+++|.+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 36778899999999999887776532 26999999 555777763 1 11367888987641
Q ss_pred CCccceeeehhhhcc-C-ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 170 IPQANAVLLKWILHN-W-NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~-~-~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.|.||+|-+..++|. | +.+.+..+|+|+++.|+ |||.++-
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk---pGG~FIg 235 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK---PGGVFIG 235 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC---CCcEEEE
Confidence 235999999999987 3 55678899999999999 7996653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=68.56 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
..+.|||||||+|.+++-.+++. ..++.++|-..+++.|++ ..+.|+++.|.+.+ .+| ..|+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 57899999999999999888886 458999998888777764 46789999998887 444 699998866443
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 184 NWN-DEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 184 ~~~-~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+- +.-.-.+|-.=-+-|+ |||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~---~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLK---EGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccC---CCceEc
Confidence 322 2222233333335678 688654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.1e-06 Score=66.40 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=68.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCC-CeEEeeCCCCC--C-C-C--ccceeeehhhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTND-NLDFLGGNMFE--A-I-P--QANAVLLKWIL 182 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~-ri~~~~~d~~~--~-~-~--~~D~v~~~~vl 182 (279)
..+||||||.|.+...+|+++|+..++++++ ...+..+. +..- ++.++++|... + . + +.|-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999998 66655543 2333 89999999764 1 1 2 35655552
Q ss_pred ccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+||+ -....|+.+.+.|+ |||.|.+..
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk---~gG~l~~aT 164 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLK---PGGVLHFAT 164 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHcc---CCCEEEEEe
Confidence 2332 12468999999999 799988755
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.6e-06 Score=77.77 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCC---CC-ccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEA---IP-QANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~v~~~ 179 (279)
..+++|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ .. ++++++.+|.++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 34689999999999999999986 3346999999 888888874 22 5899999998762 23 59999983
Q ss_pred hhh--c------cC-ChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 180 WIL--H------NW-NDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 180 ~vl--h------~~-~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
=.- . .+ ...+-..+++.+.+.|+ |||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~---~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR---PGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcC---CCCEEEEE
Confidence 110 0 00 11234578888999999 79977654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.6e-05 Score=67.28 Aligned_cols=100 Identities=13% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccC---CC--CeEEeeCCCCC---CCCccceeeehhhhc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGT---ND--NLDFLGGNMFE---AIPQANAVLLKWILH 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~---~~--ri~~~~~d~~~---~~~~~D~v~~~~vlh 183 (279)
..+|||+|+|+|..+-+..+.++.. +++++|. +.+++.++.+ .. +......++.. +.+..|+|+++++|-
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 4699999999999999999988854 5889998 7887766631 01 11101112221 234569999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+++++...+++++.+.+. +.|+|+|.-.+
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~ 143 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTP 143 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCCh
Confidence 9999888899999988877 48999986443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=65.77 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCCCC-Cccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFEAI-PQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~~-~~~D~v~~~~ 180 (279)
+..++||=||||.|..++++++. |. +++.+|+ +.+++.+++ ..+|++++.. +.+.. ..||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56789999999999999999996 54 9999999 889988875 2578888762 32222 4699999854
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
. .+ ....+.++++|+ |||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~---~~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLK---EDGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcC---CCcEEEE
Confidence 2 22 356788999999 7887665
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=69.68 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCCC------C-cccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEAI------P-QANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~~------~-~~D~v 176 (279)
.+..+|||+|||+|.++.+.+.. ...+++.+|+ +.+++.+++ .. ++++++.+|.++.. . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998876643 3448999999 888887764 22 47999999998621 2 59999
Q ss_pred eehhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.=.-..-+. ..-..+++.+.+.|+ |||.++.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk---~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLN---PGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC---CCeEEEEEe
Confidence 97522110111 123455667889999 799887654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.8e-06 Score=67.07 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=76.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 186 (279)
.+....++|+|||.|-+.. .+|.+..++.|+ ...+..++.. +.......|+.. |.+ .+|..+...++|+++
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-~~~~~~~ad~l~~p~~~~s~d~~lsiavihhls 117 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-GGDNVCRADALKLPFREESFDAALSIAVIHHLS 117 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-CCceeehhhhhcCCCCCCccccchhhhhhhhhh
Confidence 3457889999999999863 358889999999 6777777754 332566778877 544 599999999999987
Q ss_pred hh-HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 187 DE-ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 187 ~~-~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-. ...++++++.+.++ |||..+|.-.
T Consensus 118 T~~RR~~~l~e~~r~lr---pgg~~lvyvw 144 (293)
T KOG1331|consen 118 TRERRERALEELLRVLR---PGGNALVYVW 144 (293)
T ss_pred hHHHHHHHHHHHHHHhc---CCCceEEEEe
Confidence 64 55689999999999 7998776543
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=62.83 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=72.1
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc---------------CCCCeEEeeC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQG---------------TNDNLDFLGG 164 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~ 164 (279)
+.+.++..+.++.+.||||+|+|.++..++.-- +....+++|. |+.++.+++ ...++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 455555457788999999999999998887543 3333488898 888877653 1467889999
Q ss_pred CCCCC---CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 165 NMFEA---IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 165 d~~~~---~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|...- ...||.|.....- .++.++..+-|+ |||+++|-
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~---~gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLK---PGGRLLIP 192 (237)
T ss_pred CccccCCccCCcceEEEccCc--------cccHHHHHHhhc---cCCeEEEe
Confidence 98762 3359999987432 345666677788 69998873
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=68.03 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--C-Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--I-PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~-~~~D~v~~~ 179 (279)
+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++. .++++|+.+|+.+ . . ..+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4579999999999999999984 468999999 8888877641 2579999999865 2 2 248999874
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.2e-05 Score=65.21 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC----CCeEEEeeC-hhHHhhccc-C----CCCeEE--eeCCCCCC---C-----C
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP----DIKCTVFDL-PHVVDNLQG-T----NDNLDF--LGGNMFEA---I-----P 171 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~-~----~~ri~~--~~~d~~~~---~-----~ 171 (279)
++...|+|+|||+|.=...|+++.. ..+++.+|+ .+.++.+.. + -+.+++ +.+|+.+. . +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 4566899999999998887777663 467999999 667766542 1 144555 78888652 1 1
Q ss_pred -cccee-eehhhhccCChhHHHHHHHHHHH-hCCCCCCCcEEEE-Eee
Q 023625 172 -QANAV-LLKWILHNWNDEESVKLLKKCKE-AIPSKDEGGKVII-IDM 215 (279)
Q Consensus 172 -~~D~v-~~~~vlh~~~~~~~~~~L~~~~~-~L~~~~pgG~lli-~e~ 215 (279)
...++ ++...+.+++++++..+|+++++ .|+ ||+.++| +|.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~---~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS---PSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC---CCCEEEEecCC
Confidence 24444 55679999999999999999999 999 6887776 443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=62.87 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=91.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CC--CeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-ND--NLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~--ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
+....++|||||-|++...+..+. --+.+..|. ..+++.++.- .+ .+....+|-.. ++. ++|+++.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 456789999999999999999886 337889998 7788877742 12 34456666544 443 599999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCee------CCHHHHHHHHHHC
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE------RSVDDWKKLFLAA 258 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------r~~~e~~~ll~~a 258 (279)
|..+ ...-+.+|+.+|| |+|.++ ..++... ..++......+.-+-..||.. -...++-.||..|
T Consensus 149 W~Nd-LPg~m~~ck~~lK---PDg~Fi--asmlggd----TLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTND-LPGSMIQCKLALK---PDGLFI--ASMLGGD----TLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhcc-CchHHHHHHHhcC---CCccch--hHHhccc----cHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 4432 4567888999999 688443 2222221 111222222222222223221 1346788999999
Q ss_pred CCceeEE
Q 023625 259 GFSHYKI 265 (279)
Q Consensus 259 Gf~~~~~ 265 (279)
||+...+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9997665
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=64.56 Aligned_cols=76 Identities=17% Similarity=0.421 Sum_probs=60.4
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI 170 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~ 170 (279)
+...+++.-+ .++...||+||.|||.++..++++ ..+++.+++ |.++....+ .+.+.+++.||+++ +.
T Consensus 46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 3345665554 778899999999999999999998 456888887 777765542 24789999999999 78
Q ss_pred Cccceeee
Q 023625 171 PQANAVLL 178 (279)
Q Consensus 171 ~~~D~v~~ 178 (279)
|-+|.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 88998887
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=67.26 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---C-CC-cccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---A-IP-QANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~-~~D~v 176 (279)
+..++||=||+|.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4678999999999999999998766778999999 889988874 14799999999864 2 33 69999
Q ss_pred eehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++-..--.-+.. -....++.+++.|+ |||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~---~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLK---PDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEE---EEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcC---CCcEEEEEc
Confidence 873321111111 12578999999999 688776644
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=63.37 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh-cccCCCCeE-EeeCCCCC--------CCCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN-LQGTNDNLD-FLGGNMFE--------AIPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~d~~~--------~~~~~D~v~~~~v 181 (279)
...++||+|||+|.++..++++ +..+++++|. +.++.. .++. +++. +...|+.. +...+|+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 5679999999999999999987 3457999999 546554 4443 4543 33334331 1224787777654
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEE-EEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC-------CHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVI-IIDMAIENQSQDKESMETQLCFDILMVSLFRGKER-------SVDDWKK 253 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r-------~~~e~~~ 253 (279)
+ +|..+.++|+ | |.++ ++.+-..-.... . .-+|-.+ -.+++..
T Consensus 153 ~----------~l~~i~~~l~---~-~~~~~L~KPqFE~~~~~---------~------~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 153 S----------ILPELDLLLN---P-NDLTLLFKPQFEAGREK---------K------NKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred h----------HHHHHHHHhC---c-CeEEEEcChHhhhcHhh---------c------CcCCeecCHHHHHHHHHHHHH
Confidence 3 4888899999 6 5443 443322211100 0 0012222 3456677
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
.+.+.||++..+.+.|
T Consensus 204 ~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 204 KGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHcCCCeEeeEEECC
Confidence 7788899988776543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-05 Score=69.06 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=63.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCC-----C-C-ccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEA-----I-P-QANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~-----~-~-~~D~v~ 177 (279)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+.. ..+++|+.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999999874 47999999 8888887741 25899999998641 1 1 489988
Q ss_pred ehhhhccCChhH-HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWNDEE-SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~~~~-~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+.- +... ...+++.+.+ ++ |++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~---~~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LK---PERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cC---CCEEEEE
Confidence 621 1111 2355555543 67 5665544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=62.90 Aligned_cols=67 Identities=12% Similarity=0.311 Sum_probs=51.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCC----CCCCC----ccceee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNM----FEAIP----QANAVL 177 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~----~~~~~----~~D~v~ 177 (279)
....|+|+|||+|..+..++...|.++++.+|. +.++..|.+ +.+++.++..++ +.+.+ ..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345799999999999999999999999999999 666665553 368888885544 43322 377777
Q ss_pred eh
Q 023625 178 LK 179 (279)
Q Consensus 178 ~~ 179 (279)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 63
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.001 Score=51.65 Aligned_cols=67 Identities=10% Similarity=0.322 Sum_probs=51.3
Q ss_pred CCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCC--Cccceeeehh
Q 023625 114 LKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAI--PQANAVLLKW 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~--~~~D~v~~~~ 180 (279)
..-++|||||+|..+..|++.. |+..+...|+ |.+++... ....+++.+..|+.+.. .+.|+++++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 5789999999999999988865 6778999999 88877644 23456788888887732 3578777643
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.8e-05 Score=60.20 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=67.4
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh---cc---cCCCCeEEeeCCCCC-CC-CccceeeehhhhccCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN---LQ---GTNDNLDFLGGNMFE-AI-PQANAVLLKWILHNWN 186 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~---~~~~ri~~~~~d~~~-~~-~~~D~v~~~~vlh~~~ 186 (279)
+++|||.|.|.-++-++=.+|+.+++.+|. ..-+.. +. .+ ++++++.+...+ .. ..||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999999997 433322 22 24 579999998887 23 3699999988742
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
...+++-+.+.++ +||+++..-
T Consensus 127 ---l~~l~~~~~~~l~---~~G~~l~~K 148 (184)
T PF02527_consen 127 ---LDKLLELARPLLK---PGGRLLAYK 148 (184)
T ss_dssp ---HHHHHHHHGGGEE---EEEEEEEEE
T ss_pred ---HHHHHHHHHHhcC---CCCEEEEEc
Confidence 3477888888899 799888754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.1e-05 Score=65.74 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=59.9
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-C--C-
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-A--I- 170 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~--~- 170 (279)
..++++.+. ..+...+||.+||.|..+..+++..| +.+++++|. +.+++.+++. .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666664 35667999999999999999999996 789999999 9999888742 3589999999864 1 1
Q ss_pred ---Cccceeee
Q 023625 171 ---PQANAVLL 178 (279)
Q Consensus 171 ---~~~D~v~~ 178 (279)
+.+|.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 14677665
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.3e-05 Score=60.48 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C--C-c-cceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I--P-Q-ANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~--~-~-~D~v~~ 178 (279)
...++||++||+|.++.+++.+... +++.+|. +.+++.+++ ..++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999999998653 7999998 777766653 235789999998551 1 1 2 677666
Q ss_pred hhhhccCChhHHHHHHHHHH--HhCCCCCCCcEEEEEeeec
Q 023625 179 KWILHNWNDEESVKLLKKCK--EAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~--~~L~~~~pgG~lli~e~~~ 217 (279)
-=.... .....++..+. ..++ ++ .++|+|+..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~---~~-~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILE---DT-VLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCC---CC-eEEEEEecC
Confidence 322211 11233344333 3466 34 467777543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.5e-05 Score=66.54 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC---C-Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA---I-PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~---~-~~~D~v~~~ 179 (279)
+..+|||++||+|.++..++.. ..+++++|. +.+++.|+. . .++++|..+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 4579999999999999999864 468999999 888887764 1 24799999998652 1 348998873
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=67.42 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC---CCC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE---AIP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~v~~~~v 181 (279)
....+||||||.|.++..+++.+|+..++++|. ...+..+.. .-.++.++.+|+.. .++ +.|-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 456899999999999999999999999999998 544443321 12577788877632 233 3677766321
Q ss_pred hccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
= -|+.. -...+|+.+++.|+ |||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk---~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLK---DNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcC---CCCEEEEEc
Confidence 1 12211 12478999999999 799888754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.6e-05 Score=62.35 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcc----------------------c-----------CCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQ----------------------G-----------TND 157 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~----------------------~-----------~~~ 157 (279)
++.++||||+|+-.+- ++.+.+.. ..+..|. +...+..+ . ...
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4568999999996553 33333333 3777776 54443221 0 011
Q ss_pred CeE-EeeCCCCCC--C------Cc-cceeeehhhhccCC--hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch
Q 023625 158 NLD-FLGGNMFEA--I------PQ-ANAVLLKWILHNWN--DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 225 (279)
Q Consensus 158 ri~-~~~~d~~~~--~------~~-~D~v~~~~vlh~~~--~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~ 225 (279)
.|. ++..|..++ . |. ||++++..+|.... .++-.+.++++.++|| |||.+++....-.... .
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk---pGG~Lil~~~l~~t~Y-~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK---PGGHLILAGVLGSTYY-M-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE---EEEEEEEEEESS-SEE-E--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC---CCcEEEEEEEcCceeE-E--
Confidence 233 667788762 2 33 99999998886543 4567899999999999 7999988775432100 0
Q ss_pred hhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 226 SMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 226 ~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
..... +..-..+++.+++.++++||.+.+...
T Consensus 208 --vG~~~--------F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 --VGGHK--------FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --ETTEE--------EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --ECCEe--------cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 011123889999999999999988875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.9e-05 Score=70.43 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEe---eC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVF---DL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh 183 (279)
....+||||||+|.++..|+++. +..+.+ |. +..+..|.+. .+..+-+-+.+ |+| .||+|.+++++-
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccCCccchhhhhcccccc
Confidence 45679999999999999999874 222211 22 2233333221 13323222211 566 499999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.|.+.+ ..+|-++-|+|+ |||.+++..+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLR---pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLR---PGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhc---cCceEEecCCccc
Confidence 998887 468999999999 7998887665443
|
; GO: 0008168 methyltransferase activity |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=58.04 Aligned_cols=92 Identities=15% Similarity=0.307 Sum_probs=61.7
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCCc--
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIPQ-- 172 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-- 172 (279)
.+.+++... ..+...|+|||+|.|.++..|+++... ++++++ +..++..++ ..++++++.+|+.+ ++++
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 345666554 455789999999999999999999765 555555 555544443 35899999999998 6663
Q ss_pred -cceeeehhhhccCChhHHHHHHHH
Q 023625 173 -ANAVLLKWILHNWNDEESVKLLKK 196 (279)
Q Consensus 173 -~D~v~~~~vlh~~~~~~~~~~L~~ 196 (279)
.+.|+ ++.=++++.+-..++|+.
T Consensus 95 ~~~~vV-aNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVV-ANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEE-EcCCCcccHHHHHHHHhc
Confidence 34444 344455555544444443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00046 Score=55.06 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC-C-------
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA-I------- 170 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~------- 170 (279)
..++.+.+. .+.+..+|+|+|+.+|.++..+++... +.+++++|+.++-.. ..+.++.+|+..+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----PGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----CCceEEeeeccCccHHHHHHHH
Confidence 345666663 578899999999999999998888764 456999998544322 4599999999873 1
Q ss_pred -Cc--cceeeehh---hhccC------ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 171 -PQ--ANAVLLKW---ILHNW------NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 171 -~~--~D~v~~~~---vlh~~------~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+. +|+|++-. +--.+ .-.-+...+.-+...|+ |||.+++-..
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~---~~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK---PGGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC---CCCeEEEEEE
Confidence 22 58888521 11111 22244556667778899 6888776543
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=61.65 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC--C-CCccceeeehhhhcc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE--A-IPQANAVLLKWILHN 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~--~-~~~~D~v~~~~vlh~ 184 (279)
..+|||++||+|..++.++...+..++++.|+ +..++.++.. .+.+++..+|... . ...||+|++- ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877668999999 8888877641 2456788888754 2 2359999883 22
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.....+|..+.+.++ +||.+.|.
T Consensus 135 ---Gs~~~~l~~al~~~~---~~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVK---RGGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhc---CCCEEEEE
Confidence 112456777677788 68888887
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=56.64 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=66.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH---Hhhccc-C-CCCeEEeeCCCCC-C-CCc-cceeeehhhhcc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV---VDNLQG-T-NDNLDFLGGNMFE-A-IPQ-ANAVLLKWILHN 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~-~-~~ri~~~~~d~~~-~-~~~-~D~v~~~~vlh~ 184 (279)
..+++|||.|.|.=++-++=.+|+.+++.+|. ..- ++.+.. + -++++++.+...+ . .+. ||+|.++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999999999999999996 433 333332 2 2679999998876 2 235 99999987642
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
...++.=+...++ +||.++.
T Consensus 147 -----L~~l~e~~~pllk---~~g~~~~ 166 (215)
T COG0357 147 -----LNVLLELCLPLLK---VGGGFLA 166 (215)
T ss_pred -----hHHHHHHHHHhcc---cCCcchh
Confidence 3345666667778 5776543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.49 E-value=8e-05 Score=63.36 Aligned_cols=100 Identities=19% Similarity=0.405 Sum_probs=65.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCe-EEEeeChhHHhhcc-c-----CCCCeEEeeCCCCC---CCCccceeeehhhh-
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIK-CTVFDLPHVVDNLQ-G-----TNDNLDFLGGNMFE---AIPQANAVLLKWIL- 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~-~-----~~~ri~~~~~d~~~---~~~~~D~v~~~~vl- 182 (279)
..+|||||.|.|.-+-++-.-+|.++ ++++.....+...- . ...+......|+.. ++|..|.|.+.-++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 35699999999999999999999885 67777644443221 1 11233344445443 45555555444444
Q ss_pred ---ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 183 ---HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 ---h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|+=++......++++...+. |||.++|+|.-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~---~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLA---PGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhcc---CCCeEEEEeCC
Confidence 44444444458999999999 79999999963
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00049 Score=57.94 Aligned_cols=93 Identities=15% Similarity=0.352 Sum_probs=63.7
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCCc-
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIPQ- 172 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~- 172 (279)
+++.+++.++ ..+...|+|||+|.|.++..|++.. .++++++. +..++..++ ..++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3455666655 4578999999999999999999987 67888888 666666554 35899999999997 4332
Q ss_pred ---cceeeehhhhccCChhHHHHHHHHHHH
Q 023625 173 ---ANAVLLKWILHNWNDEESVKLLKKCKE 199 (279)
Q Consensus 173 ---~D~v~~~~vlh~~~~~~~~~~L~~~~~ 199 (279)
-.+.+..+.=+..+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 233444444333333 45555555
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00061 Score=58.48 Aligned_cols=93 Identities=19% Similarity=0.443 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCCCC----Ccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFEAI----PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~----~~~ 173 (279)
++..++|-+|||.|..++++++ || --+++.+|+ |.+++.++. ..+|++++..|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 68 457999999 999998872 2579999999998732 248
Q ss_pred ceeeehhhhccCChhH--------HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 174 NAVLLKWILHNWNDEE--------SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~--------~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|+++. +++|+. ...+-+-+++.|+ ++|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~---e~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLA---ETGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcC---cCceEEEe
Confidence 98887 344432 2456667778899 68877764
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=54.42 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=71.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCCCccceeeehhhhccC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAIPQANAVLLKWILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~ 185 (279)
.-.+++|||+|.|+|..+++-++... ..++..|+ |..+..++ .+.-.|.+...|...+.+.+|+++.+.++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 44578999999999999998887642 35667777 44333333 23456788888877655579999999999754
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+ .+.+++. +...++. .|-.++|-++-.+.
T Consensus 156 ~--~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 T--EADRLIP-WKDRLAE--AGAAVLVGDPGRAY 184 (218)
T ss_pred h--HHHHHHH-HHHHHHh--CCCEEEEeCCCCCC
Confidence 4 4556676 6666664 46677776655544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00034 Score=55.40 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=60.4
Q ss_pred HHHHhchhhhC--CCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------
Q 023625 102 IVIKDCKEVFE--GLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA--------- 169 (279)
Q Consensus 102 ~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~--------- 169 (279)
++.+.++. +. +..++||+||++|.++..++++. +..+++++|+...-. ...+.++.+|+.++
T Consensus 11 ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~-----~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 11 EIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP-----LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHCCC-CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc-----ccceeeeecccchhhHHHhhhhh
Confidence 44555541 22 45899999999999999999988 678999999844411 13344444444321
Q ss_pred C----Cccceeeehhhhcc---------CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 170 I----PQANAVLLKWILHN---------WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 170 ~----~~~D~v~~~~vlh~---------~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
. ..+|+|++-..... .+-+.+...|.-+.+.|+ |||.+++-
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~---~gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK---PGGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC---TTEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc---CCCEEEEE
Confidence 1 24788876431111 112234455555667789 79977653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00025 Score=56.90 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=63.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC--CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA--IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~~~~D~v~~~~v 181 (279)
..++.+|+|+-||.|.++..+++..+..+++..|+ |..++..++ ..+++....+|..+- ...+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999777888999999 888776553 467899999998772 235998888543
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEE
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~l 210 (279)
. .+..+|..+.+.++ +||.+
T Consensus 179 -----~-~~~~fl~~~~~~~~---~~g~i 198 (200)
T PF02475_consen 179 -----E-SSLEFLDAALSLLK---EGGII 198 (200)
T ss_dssp -----S-SGGGGHHHHHHHEE---EEEEE
T ss_pred -----H-HHHHHHHHHHHHhc---CCcEE
Confidence 2 24467888888888 46644
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00044 Score=52.45 Aligned_cols=84 Identities=19% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHH----CCCCeEEEeeC-hhHHhhccc--------CCCCeEEeeCCCCCC--CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATA----FPDIKCTVFDL-PHVVDNLQG--------TNDNLDFLGGNMFEA--IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~--~~~~D~v 176 (279)
.+..+|+|+|||.|+++..|+.. .++++++++|. +..++.+.. ...++.+..++.... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999992 27899999998 766666653 135667777766542 2346777
Q ss_pred eehhhhccCChhHHHHHHHHHHH
Q 023625 177 LLKWILHNWNDEESVKLLKKCKE 199 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~ 199 (279)
+.-|.--++++ .+|+...+
T Consensus 104 vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEeecccchHH----HHHHHHHH
Confidence 77666655555 44555544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0062 Score=48.94 Aligned_cols=86 Identities=9% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP---QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~v~~~~vl 182 (279)
....+.||||-++.+.+.+.+.++...++..|. +.-++.|.+ +.++++...+|-+.++. ..|+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 455699999999999999999999999999998 777776653 46899999999988643 4888877543
Q ss_pred ccCChhHHHHHHHHHHHhCC
Q 023625 183 HNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~ 202 (279)
.-.-...+|.+-.+-++
T Consensus 95 ---GG~lI~~ILee~~~~l~ 111 (226)
T COG2384 95 ---GGTLIREILEEGKEKLK 111 (226)
T ss_pred ---cHHHHHHHHHHhhhhhc
Confidence 34456778888877777
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=56.01 Aligned_cols=62 Identities=26% Similarity=0.512 Sum_probs=46.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---CC--c-cceeee
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---IP--Q-ANAVLL 178 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~~--~-~D~v~~ 178 (279)
..|+|+-||.|..++.+++.+. +++.+|+ |..++.++. ..++|+++.+|+++- .. . +|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3799999999999999999864 5899999 877877763 367999999999862 11 2 688876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=51.65 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=80.3
Q ss_pred HHHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc------
Q 023625 87 LFYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG------ 154 (279)
Q Consensus 87 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------ 154 (279)
.+..+|...++.+ ...|+..++ ..++.+|++-|.|+|.++.++++.- |.-++.-+|. ..-.+.|.+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 3455555444432 223444454 6889999999999999999999986 6678888998 444444542
Q ss_pred CCCCeEEeeCCCCCC-CC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 155 TNDNLDFLGGNMFEA-IP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 155 ~~~ri~~~~~d~~~~-~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.++.+++...|+... +. .+|+|++ +++.+. ..+-.++++++. .||+++-+.+++
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~--~g~r~csFSPCI 213 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKD--EGGRLCSFSPCI 213 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhh--cCceEEeccHHH
Confidence 478999999998763 22 4999998 333332 335556667775 466777666554
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=53.32 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC----CeEEEeeC-hhHHhhcc-----cC-CCCeEEeeCCCCCC---CCc---cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD----IKCTVFDL-PHVVDNLQ-----GT-NDNLDFLGGNMFEA---IPQ---AN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~-~~ri~~~~~d~~~~---~~~---~D 174 (279)
.+..+++|+|.|+..-+..|+..+.. ++++-+|+ ..+++... +. .--+.-+++|+..+ .|+ -=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999999888888765 78999998 55554322 22 23456677888653 332 23
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE-Eeeec
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII-IDMAI 217 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli-~e~~~ 217 (279)
.+++...|-++++++|..+|.+++.+|+ ||-.+++ +|..-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~---pGd~~LlGvDl~k 197 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALR---PGDYFLLGVDLRK 197 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCC---CcceEEEeccccC
Confidence 4567889999999999999999999999 6877666 45443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00025 Score=62.24 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=43.2
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
.+|||++||+|.++..+++... +++++|. +++++.+++. .++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 7999999 8888887741 2478999998754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=55.47 Aligned_cols=96 Identities=10% Similarity=0.285 Sum_probs=58.2
Q ss_pred CCEEEEecCCccHHHHHHHH-H-CCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC-C--CCccceeeehh
Q 023625 114 LKSLVDVAGGTGIMARAIAT-A-FPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE-A--IPQANAVLLKW 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~-~-~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~--~~~~D~v~~~~ 180 (279)
.++|+=||+|.=-++.-+.. + .++..++++|+ +..++.+++ +..+++|+++|..+ + ...||+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997766655544 3 36788999999 888887763 36799999999876 2 34799999877
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..- ...++-.++|.++.+.|+ ||.+|++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~---~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMA---PGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS----TTSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCC---CCcEEEEe
Confidence 553 233455799999999999 68877663
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=62.9
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeC-CCCCC---------CC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGG-NMFEA---------IP 171 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-d~~~~---------~~ 171 (279)
+-+.|. .+.+..+|||+||.+|.++.-..++. |+-.+.++|+-+... .....++.+ |+.+| .|
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence 444554 36788999999999999999877776 998999999744432 133444444 55443 23
Q ss_pred --ccceeeehhh--------h-ccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 172 --QANAVLLKWI--------L-HNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 172 --~~D~v~~~~v--------l-h~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
..|+|++-.. + |...-+-|..+|.-....+. |+|.+++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~---p~g~fvc 182 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI---PNGSFVC 182 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC---CCcEEEE
Confidence 2677765221 1 11223345556655556667 6887665
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00072 Score=52.69 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=72.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCCccceeeehhhhccCCh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIPQANAVLLKWILHNWND 187 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~ 187 (279)
..+.|+|.|+|.++.-.+++ .-+++.+.. |...+.|.+. ..+++++.+|..+ .+..+|+|++-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999999866665 347888888 7777666642 4689999999988 7778999987543223345
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+..+.+++.+.+-|+ -+++++=.+.
T Consensus 112 E~qVpV~n~vleFLr---~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLR---YDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhh---cCCccccHHH
Confidence 556788999999998 4777765443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.014 Score=49.05 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh-hHH-------hh---c----------------------cc-----
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP-HVV-------DN---L----------------------QG----- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-------~~---a----------------------~~----- 154 (279)
...+||-=|||-|.++.++++.. -.+.+-+.. .|+ .. . +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45789999999999999999983 344444431 111 10 0 00
Q ss_pred --------CCCCeEEeeCCCCC--CCC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 155 --------TNDNLDFLGGNMFE--AIP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 155 --------~~~ri~~~~~d~~~--~~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
...++....|||.+ +.+ .+|+|+....+. +-+.....|+.|.++|| |||..+=+.+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLk---pgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLK---PGGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhc---cCCEEEecCCccccC
Confidence 13578899999987 223 599998886664 34568899999999999 788433222221111
Q ss_pred CCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 221 SQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 221 ~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
. +.. ......-+.+.+|+.++.++.||+++.-..
T Consensus 209 ~------------~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 E------------PMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C------------CCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 000 000113456999999999999999876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0041 Score=48.86 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=84.0
Q ss_pred hhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHh-----------hccc-CCCCeEEeeCCCCC-CCC-ccc
Q 023625 110 VFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVD-----------NLQG-TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 110 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~-----------~a~~-~~~ri~~~~~d~~~-~~~-~~D 174 (279)
++++..+|+|+=.|.|.++.-|...- |.-.+..+-..+... .+++ ...+++.+..+... ..| +.|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999998877653 332333332111111 1111 12344444444433 222 467
Q ss_pred eeeehhhhcc-----CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 175 AVLLKWILHN-----WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 175 ~v~~~~vlh~-----~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
+++....-|+ +...-+.++-+.++++|| |||.++|.|+......... .... -..++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK---PGGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a 187 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK---PGGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPA 187 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcC---CCcEEEEEeccccCCCChh---hhhh-----------hcccChH
Confidence 6665433332 235567889999999999 7999999998876543321 1110 0112567
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
-..+..+.+||+..--.
T Consensus 188 ~V~a~veaaGFkl~aeS 204 (238)
T COG4798 188 VVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHhhcceeeeee
Confidence 78888899999876443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00037 Score=51.93 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=49.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCCCC---ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEAIP---QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~~~---~~D~v~~~~vl 182 (279)
.++++.|+|||.|.++.+.. +|+. .++++|+ |+.++.+... .-.+++.+.|+.++.+ -||..++.-.+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 47899999999999995443 4544 5899999 9999887742 3456788888877432 27777765433
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0056 Score=52.75 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=67.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC--C-ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI--P-QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~--~-~~D~v~~~~vlh~~~~ 187 (279)
+.++.++||+||++|.++..++++ +.+++++|..++....... ++|++..+|.+... + .+|.+++-.+. .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~-~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDT-GQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCC-CCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence 356789999999999999999998 5699999976555544444 89999999988732 2 48998886654 34
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.. +++-+.+.+.. .-.+-.|+..-++-
T Consensus 283 ~r---va~lm~~Wl~~--g~cr~aIfnLKlpm 309 (357)
T PRK11760 283 AR---VAELMAQWLVN--GWCREAIFNLKLPM 309 (357)
T ss_pred HH---HHHHHHHHHhc--CcccEEEEEEEcCC
Confidence 43 44444455652 11345566655544
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0041 Score=47.18 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=64.1
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccCC--C-C--eEEeeCCCCC---CCC---ccceeeehhhhc
Q 023625 117 LVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGTN--D-N--LDFLGGNMFE---AIP---QANAVLLKWILH 183 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~-r--i~~~~~d~~~---~~~---~~D~v~~~~vlh 183 (279)
++|+|||+|... .+.+..+. ..++++|. +.++..++... . . +.+..+|... +.. .+|++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999987 34444333 47888898 66666544221 1 1 5777777654 332 489994444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
... ....++++.+.++ |+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~---~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLK---PGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcC---CCcEEEEEeccCCC
Confidence 333 5688999999999 78988887765443
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0003 Score=55.57 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=80.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC-CCCCCCCccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG-NMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
...++||+|.|.|..+..++..+.+ +...++ ..+..+.+.. +..+... +..+..-++|+|.+.++|...-++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk--~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK--NYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc--CCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 4579999999999999887765543 233333 3344444332 1121111 111111149999999998654443
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC--CHHHHHHHHHHCCCceeEEEec
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKER--SVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r--~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
-++|+.++.+++| .+|++++. .++|-...-. .........-.-+...+|+.+ ....+.++|+++||.+....+.
T Consensus 186 ~kLL~Di~~vl~p--sngrviva-LVLP~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAP--SNGRVIVA-LVLPYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcc--CCCcEEEE-EEecccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 6899999999995 47876653 3333210000 000000000000112235433 3345778999999998777665
Q ss_pred C
Q 023625 269 L 269 (279)
Q Consensus 269 ~ 269 (279)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=49.74 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=86.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-----hh-HH------------------------------------hh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-----PH-VV------------------------------------DN 151 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~-~~------------------------------------~~ 151 (279)
.-+||-=|||.|.++..|+...+.+++--+.. .. ++ ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 45789999999999999999888777632110 00 00 00
Q ss_pred cc--cCCCCeEEeeCCCCC--CCC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC
Q 023625 152 LQ--GTNDNLDFLGGNMFE--AIP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD 223 (279)
Q Consensus 152 a~--~~~~ri~~~~~d~~~--~~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~ 223 (279)
++ ...+..+...|||.+ +.+ .+|+|+.++.+. +-......|..|.+.|+ |||..+=+.+..-.-...
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk---~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILK---PGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhcc---CCcEEEeccceeeeccCC
Confidence 00 012344557799987 222 399998876653 44567899999999999 688665444433221111
Q ss_pred chhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 224 KESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 224 ~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
. + .....+-+.+.+++.++.+.-||++.+-.
T Consensus 306 ~---------g---~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 H---------G---VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred C---------C---CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 0 0 00112456699999999999999987654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00098 Score=52.60 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCCCCCc-cceeeeh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFEAIPQ-ANAVLLK 179 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~~~-~D~v~~~ 179 (279)
...++|||||-|.++..|...+|+.-..++++ -.+.+-.++ .-.++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999998999887 555543331 113455555544432232 1111122
Q ss_pred hhhccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WILHNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~vlh~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
-.++.++|+ -+..++.+..=+|+ +||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~---~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR---EGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhh---cCceEEEEeeH
Confidence 222223333 12457788888899 69998877654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0045 Score=50.08 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC---CCC--ccceeee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE---AIP--QANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~---~~~--~~D~v~~ 178 (279)
+...+|||.=.|-|..+++.+++.. ..++-++. |.+++.|.- ...+|+++.||..+ .++ +||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi- 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII- 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence 4678999999999999999998743 26777777 888888763 13478999999886 344 488876
Q ss_pred hhhhccCC------hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 179 KWILHNWN------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 179 ~~vlh~~~------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
|+-| .=-...+-++++++|+ |||+++=.- ..+.. .+..+. -+....
T Consensus 211 ----HDPPRfS~AgeLYseefY~El~RiLk---rgGrlFHYv---G~Pg~--------ryrG~d----------~~~gVa 262 (287)
T COG2521 211 ----HDPPRFSLAGELYSEEFYRELYRILK---RGGRLFHYV---GNPGK--------RYRGLD----------LPKGVA 262 (287)
T ss_pred ----eCCCccchhhhHhHHHHHHHHHHHcC---cCCcEEEEe---CCCCc--------ccccCC----------hhHHHH
Confidence 3211 1124578899999999 799986322 11110 011111 245678
Q ss_pred HHHHHCCCceeEEEec
Q 023625 253 KLFLAAGFSHYKITPM 268 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~ 268 (279)
+.|+++||.+++....
T Consensus 263 ~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 263 ERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHhcCceeeeeehh
Confidence 8999999997766544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00047 Score=52.38 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------CCCCeEEeeCCCCCCC----C-ccceeee
Q 023625 114 LKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------TNDNLDFLGGNMFEAI----P-QANAVLL 178 (279)
Q Consensus 114 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~~----~-~~D~v~~ 178 (279)
+.+|+++|||- |..+..++..-|...+.+.|- ...++..+. ...++.++.-+....+ . .||.|+.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999995 455555666668888888897 666665543 1234444444443321 2 5999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..++. =++....+.+-|...|+ |.|+-+++.
T Consensus 110 ADClF--fdE~h~sLvdtIk~lL~---p~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLF--FDEHHESLVDTIKSLLR---PSGRALLFS 140 (201)
T ss_pred ccchh--HHHHHHHHHHHHHHHhC---cccceeEec
Confidence 99884 45666788899999999 677755543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0043 Score=49.08 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=62.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCe---------EEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC-C-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIK---------CTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI-P- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~- 171 (279)
+.+...|+|-=||+|.+.++.+...++.. +++.|+ +.+++.++. ....+.+...|+.+ +. .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888777766 999999 888887764 34678999999987 53 2
Q ss_pred ccceeeehhhhcc-CCh-----hHHHHHHHHHHHhCC
Q 023625 172 QANAVLLKWILHN-WND-----EESVKLLKKCKEAIP 202 (279)
Q Consensus 172 ~~D~v~~~~vlh~-~~~-----~~~~~~L~~~~~~L~ 202 (279)
.+|+|+..-..-. ... +--.++++++.++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~ 142 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK 142 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC
Confidence 4898887433221 121 122456788888888
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0072 Score=48.85 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=74.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC---------Ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI---------PQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~---------~~~ 173 (279)
.-+.++.+|||.=+|.-+.+++.+.|. -+++.+|. +...+.+.+ ....|+++.++..+.+ +.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 346789999999999999999999985 57999998 555555442 4689999999887531 249
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|.+|+- +|-+ .....+.++.+.++ +||.|++-...++.
T Consensus 151 DfaFvD----adK~-nY~~y~e~~l~Llr---~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKD-NYSNYYERLLRLLR---VGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchH-HHHHHHHHHHhhcc---cccEEEEeccccCC
Confidence 998873 2344 34588999999999 67766554444444
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.019 Score=48.20 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=93.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCC------Cc-----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAI------PQ----- 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~~----- 172 (279)
.+...||.+|||-=.-...+... +++++.-+|.|++++.-++ ...+..++..|+...+ .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998888776422 3578888899998875332 2468899999987321 12
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh-hcC---CeeCCH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS-LFR---GKERSV 248 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~---~~~r~~ 248 (279)
.-++++-.++..++++++.++|+.+.+... ||+.| +.|.+.+-.... .......... ... ..+ -...+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~---~gs~l-~~d~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSA---PGSRL-AFDYVRPLDGEW-RAGMRAPVYH--AARGVDGSGLVFGIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCC---CCcEE-EEEeccccchhH-HHHHHHHHHH--hhhcccccccccCCCh
Confidence 336777889999999999999999999887 46654 456554411111 0000000000 000 000 111367
Q ss_pred HHHHHHHHHCCCceeEE
Q 023625 249 DDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~ 265 (279)
++..++|++.||+..+.
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00095 Score=58.89 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=42.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
.+|||++||+|.++..+++... +++++|. +.+++.+++. .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 7999999 8888877641 2478999998754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=53.06 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=71.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC---CCC-ccceeee-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE---AIP-QANAVLL- 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~---~~~-~~D~v~~- 178 (279)
..++.+|||+.+|+|.=+..+++...+ -.++..|+ +.-+...++ . ..++.+...|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999998754 47889998 555554442 1 2567777777654 233 4898885
Q ss_pred ---h--hh-------hccCChhHH-------HHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 ---K--WI-------LHNWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ---~--~v-------lh~~~~~~~-------~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+ .+ ...|+.++. .+||.++.+.|+ |||+|+....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk---pGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK---PGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEECC
Confidence 2 12 223444333 689999999999 7998866553
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=51.63 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
+...+|+|||||-=-++.-.....|+.++++.|+ ...++.... +..+.++...|.....| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4478999999999999998888888999999999 777766553 45678888889998544 5999999999987
Q ss_pred CChhHHHHHHHHHHHhCC
Q 023625 185 WNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~ 202 (279)
+..++. ..-.++.+.++
T Consensus 184 le~q~~-g~g~~ll~~~~ 200 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR 200 (251)
T ss_dssp HHHHST-THHHHHHHHSC
T ss_pred HHHHhc-chHHHHHHHhC
Confidence 766543 33344555565
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0018 Score=49.00 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
+++|||||.|.++..+++.+|..+++++|. |...+.+++. ..++++....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 8887766531 1457777776654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0087 Score=50.78 Aligned_cols=100 Identities=24% Similarity=0.451 Sum_probs=71.9
Q ss_pred CCEEEEecCCccHHHHHHHHHC--------------------CCCeEEEeeC---hhHHhhccc----------------
Q 023625 114 LKSLVDVAGGTGIMARAIATAF--------------------PDIKCTVFDL---PHVVDNLQG---------------- 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 154 (279)
..+||.||||.|.=..+|+..+ +.+.++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999998777777665 2367889997 344433210
Q ss_pred ------CCCCeEEeeCCCCC-CC---------CccceeeehhhhccC---ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 155 ------TNDNLDFLGGNMFE-AI---------PQANAVLLKWILHNW---NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~-~~---------~~~D~v~~~~vlh~~---~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..-.++|...|+++ .. +..++|.+.+.++.+ +-.+..++|.++...++ ||..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~---~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICP---PGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC---CCcEEEEEcC
Confidence 01257899999987 22 136888777666543 45577899999999999 7999999985
Q ss_pred e
Q 023625 216 A 216 (279)
Q Consensus 216 ~ 216 (279)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.064 Score=43.43 Aligned_cols=133 Identities=10% Similarity=0.107 Sum_probs=84.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhH----HhhcccCCCCeEEeeCCCCCCC------Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHV----VDNLQGTNDNLDFLGGNMFEAI------PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~ 178 (279)
+.++.+||-+|.++|....++...-. +-.+.+++. |.. +..|++. .+|--+-.|...|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCChHHhhcccccccEEEe
Confidence 67889999999999999999998754 667778877 533 3445554 77888888887752 35888876
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
- +- .++++.-++.|+..-|| +||.++++=-...-+...+|. . ...+=.+-|++.
T Consensus 150 D-Va---Qp~Qa~I~~~Na~~fLk---~gG~~~i~iKa~siD~t~~p~---~----------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 150 D-VA---QPDQARIAALNARHFLK---PGGHLIISIKARSIDSTADPE---E----------------VFAEEVKKLKEE 203 (229)
T ss_dssp E--S---STTHHHHHHHHHHHHEE---EEEEEEEEEEHHHH-SSSSHH---H----------------HHHHHHHHHHCT
T ss_pred c-CC---ChHHHHHHHHHHHhhcc---CCcEEEEEEecCcccCcCCHH---H----------------HHHHHHHHHHHc
Confidence 3 32 24567778888989999 699888754322211111110 0 112224556888
Q ss_pred CCceeEEEecCC
Q 023625 259 GFSHYKITPMLG 270 (279)
Q Consensus 259 Gf~~~~~~~~~~ 270 (279)
||+..+...+.+
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999999988754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0021 Score=56.27 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=79.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+...++|+|||.|.....+.. +..+.++++|. +.-+.++.. ...+..++.+|+.. |.+ .+|.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34556899999999999987766 46678999998 444444332 34566678889988 565 499999988
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+..+.++. ..++++++++++ |||...+.+.+....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~k---pGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLK---PGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcH--HHHHHHHhcccC---CCceEEeHHHHHhhh
Confidence 88777775 578999999999 799888888765543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.038 Score=44.34 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=83.4
Q ss_pred HHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----CCCCeEEeeCC
Q 023625 90 DLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----TNDNLDFLGGN 165 (279)
Q Consensus 90 ~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d 165 (279)
..|..+....++...+++ ...+.+||.||=|-|.....+.++.|..+.++---|.+..+.+. ..++|....|-
T Consensus 81 ~VMm~WEtpiMha~A~ai---~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 81 GVMMRWETPIMHALAEAI---STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhhHHHHHHHHHH---hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecc
Confidence 445555555556555554 46789999999999999999999888877766655889888774 24677777774
Q ss_pred CCC---CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 166 MFE---AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 166 ~~~---~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
..+ .++ .||-|+.--.-- .-++...+-+.+.+.|| |+|.+-.+...
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLk---P~gv~SyfNg~ 208 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLK---PEGVFSYFNGL 208 (271)
T ss_pred hHhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcC---CCceEEEecCc
Confidence 433 334 488887633211 12456778889999999 79987776644
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0011 Score=47.47 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=39.7
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeeC-h---hHHhhccc--CCCCeEEeeCCCCCC---C--Cccceeeehhhhc
Q 023625 118 VDVAGGTGIMARAIATAFPDI---KCTVFDL-P---HVVDNLQG--TNDNLDFLGGNMFEA---I--PQANAVLLKWILH 183 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~~---~--~~~D~v~~~~vlh 183 (279)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..++++++.++..+- . ..+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998877654 6899998 5 23333332 357899999998652 2 2589888743 23
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+.+..-++.+.+.|+ |||.|++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~---~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLA---PGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEE---EEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 33567788999999999 688776654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.21 Score=39.83 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=92.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHH----hhcccCCCCeEEeeCCCCCCC------Cccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVV----DNLQGTNDNLDFLGGNMFEAI------PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~~ 179 (279)
+.++.+||=+|..+|....++....++-.+.++.. |.+. ..+++. .++--+-+|...|. +..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQ- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEE-
Confidence 67899999999999999999999888656666665 4433 344443 67777888887763 35788875
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.+- .++++.-+..|+..-|+ +||.++++=-...-+...+|. .. -.+| .+-|++.|
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk---~~G~~~i~iKArSIdvT~dp~---~v---------------f~~e-v~kL~~~~ 206 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLK---KGGYVVIAIKARSIDVTADPE---EV---------------FKDE-VEKLEEGG 206 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcc---cCCeEEEEEEeecccccCCHH---HH---------------HHHH-HHHHHhcC
Confidence 222 34566677788888888 688766654433333222110 00 1123 34568889
Q ss_pred CceeEEEecCCc---eeEEEEe
Q 023625 260 FSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 260 f~~~~~~~~~~~---~~~i~~~ 278 (279)
|++.++.++.+. +.+|.++
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 999999887543 5666554
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.024 Score=48.56 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=92.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCC-CCC------ccc--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFE-AIP------QAN-- 174 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~-~~~------~~D-- 174 (279)
+...||-+|||-=.-+..+- +| ++++.-+|+|++++.=++ ...+..+++.|+.+ +++ +||
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 46899999998766554433 34 478888899999975432 23489999999995 443 233
Q ss_pred ---eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch--hhhhhhhcchhhh-hhcCCeeCCH
Q 023625 175 ---AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE--SMETQLCFDILMV-SLFRGKERSV 248 (279)
Q Consensus 175 ---~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~--~~~~~~~~d~~~~-~~~~~~~r~~ 248 (279)
++++-.++..+++++..++|++|..... ||..++.... .+....... ............. ....-.....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~---~gS~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSA---PGSRVAFDYS-LPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP 245 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCC---CCceEEEecc-ccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence 6778889999999999999999999998 5666555432 111110000 0000000000000 0000112357
Q ss_pred HHHHHHHHHCCCceeEE
Q 023625 249 DDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~ 265 (279)
.++..++.+.||.....
T Consensus 246 ~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 246 AEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHhcCEEEEec
Confidence 89999999999987766
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.022 Score=54.75 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=67.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC------------------------------------------CCCeEEEeeC-hhH
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF------------------------------------------PDIKCTVFDL-PHV 148 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~~~~~D~-~~~ 148 (279)
.+...++|-.||+|.++++.+... ...+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456899999999999999887631 1236899999 888
Q ss_pred Hhhccc------CCCCeEEeeCCCCC-CCC----ccceeeehhhhc-cCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 149 VDNLQG------TNDNLDFLGGNMFE-AIP----QANAVLLKWILH-NWN-DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 149 ~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~v~~~~vlh-~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
++.|+. ..+++++..+|+.+ +.+ .+|+|++.=..- .+. +++...+.+.+.+.++..-+|++++++..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 988874 35679999999976 322 389988753221 122 23334444444444432115888777653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.017 Score=49.91 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=64.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHH-------CCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCC-C-CC--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATA-------FPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFE-A-IP-- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~-~-~~-- 171 (279)
.....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++. . .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999998874 47788999999 776665541 1 2334588888876 2 22
Q ss_pred -ccceeeehhhh--ccCChh-----------------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWIL--HNWNDE-----------------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vl--h~~~~~-----------------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++.=.+ ..|.+. .-...+.++.+.|+ +||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk---~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK---PGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc---cccceeEEe
Confidence 59999874222 211111 11347888899999 699876644
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.023 Score=52.80 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC--------CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC--------C
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD--------IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA--------I 170 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~--------~ 170 (279)
...+|+|.+||+|.++.++++..+. ..++++|+ +..+..++. . ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987752 56789999 777776653 1 12345565654431 1
Q ss_pred Cccceeeeh
Q 023625 171 PQANAVLLK 179 (279)
Q Consensus 171 ~~~D~v~~~ 179 (279)
+.||+|+..
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 358998873
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=49.80 Aligned_cols=91 Identities=13% Similarity=0.223 Sum_probs=67.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC--C--Cccceeeehhhhc
Q 023625 115 KSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA--I--PQANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~--~--~~~D~v~~~~vlh 183 (279)
-+|||+-||+|..++.++.+.++ -+++..|+ +..++.+++ . ..++++..+|...- . ..||+|.+ ....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl-DPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI-DPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe-CCCC
Confidence 58999999999999999998654 46999999 888877664 1 24578888888752 1 35999987 3332
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ ...+|..+.+.++ +||.|.+.-
T Consensus 125 --s---~~~fld~al~~~~---~~glL~vTa 147 (374)
T TIGR00308 125 --T---PAPFVDSAIQASA---ERGLLLVTA 147 (374)
T ss_pred --C---cHHHHHHHHHhcc---cCCEEEEEe
Confidence 1 1357888888888 688888873
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.022 Score=45.63 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCEEEEecCCccH---HHHHHHHHC-CCCeEEEeeC-hhHH-hhccc---CCCCeEEeeCCCCCC-----C------Ccc
Q 023625 114 LKSLVDVAGGTGI---MARAIATAF-PDIKCTVFDL-PHVV-DNLQG---TNDNLDFLGGNMFEA-----I------PQA 173 (279)
Q Consensus 114 ~~~vlDvG~G~G~---~~~~l~~~~-p~~~~~~~D~-~~~~-~~a~~---~~~ri~~~~~d~~~~-----~------~~~ 173 (279)
...|+++|--.|. +...+++.. ++.+++++|+ .... ..+.+ ..+||+++.||-.++ . +..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 5799999965554 444556666 7889999998 2222 22222 358999999998753 1 112
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+|+. ..=|. .+.+.+.|+.....++ +|+.++|-|....
T Consensus 113 vlVil-Ds~H~--~~hvl~eL~~y~plv~---~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 113 VLVIL-DSSHT--HEHVLAELEAYAPLVS---PGSYLIVEDTIIE 151 (206)
T ss_dssp EEEEE-SS------SSHHHHHHHHHHT-----TT-EEEETSHHHH
T ss_pred eEEEE-CCCcc--HHHHHHHHHHhCccCC---CCCEEEEEecccc
Confidence 34433 33332 2447788999999999 7888888776544
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.021 Score=50.53 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCCCC------C-ccceee
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFEAI------P-QANAVL 177 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~------~-~~D~v~ 177 (279)
+++|||+=|=||.++.+.+.. ++ ++|.+|+ ..+++-|++ ...++.|+.+|.++-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999988875 45 8999999 888888874 2468999999998732 2 599999
Q ss_pred ehh------hhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LKW------ILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~~------vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+-= -=..|+ ..+-..++..+.+.|+ |||.++++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~---pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLA---PGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcC---CCCEEEEEe
Confidence 811 000011 2345688999999999 799888765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.039 Score=47.24 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE 168 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~ 168 (279)
..++++.+. ..++..+||.=+|.|..+.+++++.|+.+++++|. +.+++.+++ ..+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345666664 45677999999999999999999988899999999 888888764 24588888888754
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.047 Score=46.36 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCC------CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEA------IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~------~~~~D~v~ 177 (279)
..+++|||+=|=||.++.+.+.. .-.+++.+|. ..+++.+++ . .++++|+..|.++- ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999976654 2347999999 888887774 2 36899999999862 13599998
Q ss_pred eh---hhhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LK---WILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~---~vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+- ..=..+. ..+-.++++.+.+.++ |||.|+.+.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~---~gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLK---PGGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcC---CCCEEEEEc
Confidence 71 0000011 2345678999999999 789876544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.052 Score=46.49 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=49.6
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMF 167 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~ 167 (279)
..++++.+. ..+...+||.=-|.|..+.++++++|+++++++|. |.+++.+++ ..+|+.++.++|.
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 355666665 56778999999999999999999999999999999 899987774 2578999988875
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.053 Score=47.08 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=76.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--CC-Cccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--AI-PQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~v~~~~v 181 (279)
..+.+|+|+=+|.|.+++.++++..- +++..|+ |..++..++ ..++++.+.||..+ +. +.||-|+|...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 45889999999999999999987543 3999999 888876653 35679999999987 33 46999999764
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
- .+.+.+..+.+.++ +||.+...+.+-.+
T Consensus 266 ~------~a~~fl~~A~~~~k---~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLK---DGGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhh---cCcEEEEEeccchh
Confidence 3 24567778888888 68888888776544
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.021 Score=45.28 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
.+.++||+=||+|.++.+.+.+.- .+++.+|. +..+...++ ..+++.++..|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999988753 37999998 777766553 235789999996541 125999998
Q ss_pred hhhhccCChhHHHHHHHHHH--HhCCCCCCCcEEEEEeeecC
Q 023625 179 KWILHNWNDEESVKLLKKCK--EAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~--~~L~~~~pgG~lli~e~~~~ 218 (279)
-=.. ..... ..++|..+. ..|+ + +.++|+|+...
T Consensus 121 DPPY-~~~~~-~~~~l~~l~~~~~l~---~-~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGLY-YEELLELLAENNLLN---E-DGLIIIEHSKK 156 (183)
T ss_dssp --ST-TSCHH-HHHHHHHHHHTTSEE---E-EEEEEEEEETT
T ss_pred CCCc-ccchH-HHHHHHHHHHCCCCC---C-CEEEEEEecCC
Confidence 4322 22221 245666665 6677 3 45777787655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.09 Score=43.52 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----------CCCCeEEeeCCCCCC------CCc-cce
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG-----------TNDNLDFLGGNMFEA------IPQ-ANA 175 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~------~~~-~D~ 175 (279)
..+||++|+|+|..++..+. .....++..|.+..++.-+. .+..+.+...+-..+ .+. +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56899999999966655554 45778999998777654331 233455544444332 234 899
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+.+.+++.- +...-+++-++..|. .++.+++.-...
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~---~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLA---KDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHh---cCCeEEEEEecc
Confidence 9999988643 223345555556676 467555544433
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.32 Score=40.00 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCCC-----ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAIP-----QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~-----~~D~v~~~~vl 182 (279)
.+++||-|| -.-..+++++...+..+++++|+ +..++..+ +.+-.|+.+..|+..++| .||+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999998 55566777777777789999999 66666544 333459999999998765 4999987321
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++.+-..-+|.+...+|+. +|+..++
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~ 147 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGYF 147 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence 3556778899999999995 6655443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.064 Score=48.37 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=60.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--C-C---Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--A-I---PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~---~~~D~v~~ 178 (279)
..+..+++|+=||.|.++..|+++ ..+++++++ ++.++.|+. ..++++|+.+|..+ + . ..+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 467999999 888888774 23569999999876 2 2 14788887
Q ss_pred hhhhccCChhHHH-HHHHHHHHhC
Q 023625 179 KWILHNWNDEESV-KLLKKCKEAI 201 (279)
Q Consensus 179 ~~vlh~~~~~~~~-~~L~~~~~~L 201 (279)
+-|..-+. .+++.+.+.-
T Consensus 369 -----DPPR~G~~~~~lk~l~~~~ 387 (432)
T COG2265 369 -----DPPRAGADREVLKQLAKLK 387 (432)
T ss_pred -----CCCCCCCCHHHHHHHHhcC
Confidence 33333333 5566555543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=44.76 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred hCCCCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC---CCCCCC-ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN---MFEAIP-QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d---~~~~~~-~~D~v~~~~vlh~ 184 (279)
..+..+|+=+|. |-|+.+..++++.- ++++++|. ++-.+.|+++ ..-.++... ..++.. .+|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l-GAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL-GADHVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh-CCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 566788887774 67889999999776 99999999 7778888887 333334332 222223 2898887543 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..+....++|+ +||+++++-...
T Consensus 240 -------~~~~~~l~~l~---~~G~~v~vG~~~ 262 (339)
T COG1064 240 -------ATLEPSLKALR---RGGTLVLVGLPG 262 (339)
T ss_pred -------hhHHHHHHHHh---cCCEEEEECCCC
Confidence 23556667788 799999988663
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.53 Score=40.06 Aligned_cols=143 Identities=17% Similarity=0.297 Sum_probs=98.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeChhHHhh-cc---c-----------------------CCCCeEE
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDLPHVVDN-LQ---G-----------------------TNDNLDF 161 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~-a~---~-----------------------~~~ri~~ 161 (279)
..+...|+.+|||.-.+...|...+ +.++++-+|.|.+++. .. . ...+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999988 7788999999777653 21 0 0233444
Q ss_pred eeCCCCC--CC-----C-----c-cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh
Q 023625 162 LGGNMFE--AI-----P-----Q-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228 (279)
Q Consensus 162 ~~~d~~~--~~-----~-----~-~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~ 228 (279)
...|+.+ .+ + + .-++++--+|-.++++++..+++-+.+... .+.+++.|.+.+.+.-+
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~----~a~fv~YEQi~~~D~Fg----- 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE----NAHFVNYEQINPNDRFG----- 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC----cccEEEEeccCCCChHH-----
Confidence 4444442 00 0 1 234555667778899999999999999887 68899999888554221
Q ss_pred hhhhcchhhhhhc-------CC--eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 229 TQLCFDILMVSLF-------RG--KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 229 ~~~~~d~~~~~~~-------~~--~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
-.|.... .| ..-|.+..++-+.++||+.+.+.++
T Consensus 236 ------~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 ------KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ------HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 1122211 11 2237788889999999998877665
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.018 Score=40.80 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
+....+|+|||+|.+.--|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4668999999999999888775 567888883
|
; GO: 0008168 methyltransferase activity |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.35 Score=42.89 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCCEEEEecCCccHHHHHHHH--------H-------CCCCeEEEeeChhH--------Hhhccc-----------CCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIAT--------A-------FPDIKCTVFDLPHV--------VDNLQG-----------TNDN 158 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~~--------~~~a~~-----------~~~r 158 (279)
+.-+|+|+|||+|.++..+.. + -|..++..-|+|.. +..-++ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 356899999999977654422 2 25678888887521 110000 0112
Q ss_pred ---eEEeeCCCCCC-CC--ccceeeehhhhccCCh--h----------------------------------HHHHHHHH
Q 023625 159 ---LDFLGGNMFEA-IP--QANAVLLKWILHNWND--E----------------------------------ESVKLLKK 196 (279)
Q Consensus 159 ---i~~~~~d~~~~-~~--~~D~v~~~~vlh~~~~--~----------------------------------~~~~~L~~ 196 (279)
+.-++|+|++. +| .-++++++..||-++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24466788874 45 4899999999986552 0 12334444
Q ss_pred HHHhCCCCCCCcEEEEEeeecC
Q 023625 197 CKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 197 ~~~~L~~~~pgG~lli~e~~~~ 218 (279)
=++=|. |||++++.-.-.+
T Consensus 223 Ra~ELv---pGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMK---RGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhc---cCcEEEEEEecCC
Confidence 456677 7999998766554
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.36 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=71.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeC-CCCC-CCCc--cceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGG-NMFE-AIPQ--ANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~-d~~~-~~~~--~D~v~~~~ 180 (279)
..++..|+|==||||.++++..-. ++++++.|+ ..+++-|+.+ .....+... |... |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999987765 789999999 8888888742 134444444 7766 6664 88886511
Q ss_pred ------hhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ------ILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 ------vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
....-. ++-..++|..+.++|+ +||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk---~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLK---PGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhh---cCcEEEEecC
Confidence 111111 3456788999999999 6998887543
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.14 Score=40.50 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----C----CCCeEEeeCCCCCC-C----------Cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----T----NDNLDFLGGNMFEA-I----------PQ 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~d~~~~-~----------~~ 172 (279)
++...||.+|||-=.....+....++++++-+|+|++++.-++ . ..+.++++.|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 3445999999999999999999888899999999998875442 1 12356799999862 1 11
Q ss_pred -cceeeehhhhccCChhHHHHHHHHHH
Q 023625 173 -ANAVLLKWILHNWNDEESVKLLKKCK 198 (279)
Q Consensus 173 -~D~v~~~~vlh~~~~~~~~~~L~~~~ 198 (279)
.-++++-.++..++++++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 34677778899999999998888763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.083 Score=47.75 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=63.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hh----HHhhcccCCCCeEEeeCCCCCCC---C-ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PH----VVDNLQGTNDNLDFLGGNMFEAI---P-QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~~---~-~~D~v~~~~vl 182 (279)
...+.|+|..+|.|.++.+|.+. | +.+... |. .+...-. -..--+-+|..+++ | .||++...+++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd--RGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD--RGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh--cccchhccchhhccCCCCcchhheehhhhh
Confidence 45678999999999999999764 3 444443 22 2222111 11222344555543 4 49999999888
Q ss_pred ccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.+.+. +...+|-++-|.|+ |+|.++|-|
T Consensus 438 s~~~~rC~~~~illEmDRILR---P~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILR---PGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcC---CCceEEEec
Confidence 766543 55688999999999 799998855
|
; GO: 0008168 methyltransferase activity |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.043 Score=44.15 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=45.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE 168 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~ 168 (279)
....|+|.-||-|..++.++.++|. ++.+|+ |.-+..|+. ..+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999775 778888 766777663 36799999999986
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.21 Score=43.91 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=55.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCC---------------------------------------eEEEeeC-hhHHh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDI---------------------------------------KCTVFDL-PHVVD 150 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~~ 150 (279)
+.+...++|==||+|.++++.+...+++ .+++.|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4556799999999999999998877532 2679999 89998
Q ss_pred hccc------CCCCeEEeeCCCCC-CCC--ccceeeeh
Q 023625 151 NLQG------TNDNLDFLGGNMFE-AIP--QANAVLLK 179 (279)
Q Consensus 151 ~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~ 179 (279)
.|+. +.+.|+|..+|+.. +.+ .+|+|++.
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 8773 46889999999876 333 68888884
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=1 Score=32.38 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=57.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC----CccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI----PQANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~----~~~D~v~~~~vlh~~~~ 187 (279)
...++|++||-|-=......++++ ++.++..|+.+- .++ ..+.+..-|+++|- .++|+|++.. ++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP---EGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc---ccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 345699999988766555444443 378999998333 332 57899999999973 3699999854 56
Q ss_pred hHHHHHHHHHHHhCC
Q 023625 188 EESVKLLKKCKEAIP 202 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~ 202 (279)
++....+-+++++++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 667777778888876
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.3 Score=41.41 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCe-EEEeeC-hhHHhhccc----CCCCeEEeeCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQG----TNDNLDFLGGNMF 167 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~ 167 (279)
.+++++.+. ..+....+|.==|.|..+.++++++|... ++++|. |.+++.|++ ..+|+.++.++|.
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 355666665 46678999999999999999999999765 999999 999999885 2579999988775
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.77 Score=36.32 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C--CCCeEEeeCCCCCC---C---Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T--NDNLDFLGGNMFEA---I---PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~~---~---~~~D~v~~~ 179 (279)
.+.++||+=+|+|.++.+-+.+.- .+++.+|. ..+....++ + ..+.++...|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 478999999999999999998854 36888887 666555443 2 37888888887631 1 139999985
Q ss_pred hhhc-cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 180 WILH-NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 180 ~vlh-~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
=..+ .+.+.+...++-.-...|+ |+| ++++|.-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~---~~~-~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLK---PGA-LIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcC---CCc-EEEEEeCC
Confidence 4444 1122121222222345688 566 45555443
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.32 Score=35.74 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCC----ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIP----QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~v~~~~vlh~~~~ 187 (279)
.+..+|++||-|.=.-....++.. +..+++.|..+. .+. ..+.++.-|+++|-. ++|+|++.+ ++
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~--~a~---~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR--KAP---EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PP 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc--ccc---cCcceeeecccCCCHHHhcCCcEEEEeC-----CC
Confidence 345699999977766554444443 388999998332 222 678999999999742 689999866 44
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+...-+.++++... .-++|.-
T Consensus 81 ~El~~~il~lA~~v~-----adlii~p 102 (127)
T PF03686_consen 81 PELQPPILELAKKVG-----ADLIIRP 102 (127)
T ss_dssp TTSHHHHHHHHHHHT------EEEEE-
T ss_pred hHHhHHHHHHHHHhC-----CCEEEEC
Confidence 455556666766654 5555543
|
; PDB: 2K4M_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.062 Score=40.78 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=36.8
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.|+|+..|++.++.-++-...++.+++.|| |||+|-|.-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lr---p~G~LriAv 86 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLR---PGGKLRIAV 86 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---cCcEEEEEc
Confidence 5999999999999999999999999999999 799887754
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.032 Score=39.80 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=42.7
Q ss_pred cceeeehhhh---c-cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh--hhcchhhhhhcCCeeC
Q 023625 173 ANAVLLKWIL---H-NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ--LCFDILMVSLFRGKER 246 (279)
Q Consensus 173 ~D~v~~~~vl---h-~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~r 246 (279)
||+|++..|- | +|.|+....+++++++.|+ |||.++ +|+- |+..+. .-..-.+......-..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~---pGG~li-lEpQ--------~w~sY~~~~~~~~~~~~n~~~i~l 69 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR---PGGILI-LEPQ--------PWKSYKKAKRLSEEIRENYKSIKL 69 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEE-EE-----------HHHHHTTTTS-HHHHHHHHH---
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC---CCCEEE-EeCC--------CcHHHHHHhhhhHHHHhHHhceEE
Confidence 7888875542 2 4789999999999999999 677555 4431 110000 0000001111112223
Q ss_pred CHHHHHHHHHH--CCCceeEEEecC
Q 023625 247 SVDDWKKLFLA--AGFSHYKITPML 269 (279)
Q Consensus 247 ~~~e~~~ll~~--aGf~~~~~~~~~ 269 (279)
.++++.+.|.+ .||...+....+
T Consensus 70 rP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 70 RPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp -GGGHHHHHTSTTT---EEEEE---
T ss_pred ChHHHHHHHHhcccceEEEEEcccC
Confidence 56678888877 599988765553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.45 Score=41.82 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=72.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEe---eChhHHhhcc------------cCCCCeEEeeCCCC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVF---DLPHVVDNLQ------------GTNDNLDFLGGNMF 167 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~------------~~~~ri~~~~~d~~ 167 (279)
+++.+. ..+....+|+|+|.|.....++.....-.-+++ |.|.-+...+ .....++.+.++|.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344443 567889999999999998877765433333444 4333332222 11356889999998
Q ss_pred CC------CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 168 EA------IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 168 ~~------~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
.+ .+.+++|++.++.. +++...+ ++++..-++ +|-+++-.+...+.+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck---~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCK---DGTRIISSKPLVPRP 314 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCC---CcceEeccccccccc
Confidence 74 23599999999873 5554333 347777777 688888888877743
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.92 Score=41.04 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=69.4
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccC-C
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNW-N 186 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~-~ 186 (279)
+++-+|||.-.++..+-+.. .-.++..|. +.+++.... ..+-+.+...|+.. .++ .||+++....++.+ .
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 99999999998887776643 235788888 444443332 12557788888877 454 69999999888775 3
Q ss_pred hhH-------HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 187 DEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 187 ~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|++ +-..+.+++++++ |||+.+.+...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~---~~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLA---PGGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhc---cCCEEEEEEee
Confidence 332 2346889999999 79998887764
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.45 Score=35.94 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=60.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC-CCCccceeeeh---h
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE-AIPQANAVLLK---W 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~-~~~~~D~v~~~---~ 180 (279)
.+..+.+|+|.|.|....+.++.. -...+++++ |-.+..++ ..+.+..|..-|+++ +...|.-+++. .
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 456799999999999988877764 345788888 55554443 235688899999988 66554333322 2
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
++.+ +-.+++.-|+ .+.+++-.-.-+|.
T Consensus 150 ~m~d--------Le~KL~~E~p---~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMPD--------LEDKLRTELP---ANTRVVACRFPLPT 177 (199)
T ss_pred HHhh--------hHHHHHhhCc---CCCeEEEEecCCCc
Confidence 3322 2233444566 46677665554443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.3 Score=36.32 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeC-CCCC--C--CC-ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGG-NMFE--A--IP-QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~-d~~~--~--~~-~~D~v~~~~vlh 183 (279)
..+..+||||..||.++--++++.- .++.++|. .+..-..+.. +|+..... |+.. + +. ..|++++--.+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF- 154 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRND-PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF- 154 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcC-CcEEEEecCChhhCCHHHcccCCCeEEEEeeh-
Confidence 4678999999999999999988743 36888896 2233333333 66665544 3332 1 11 25666552211
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEE-EEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVI-IIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
--...+|..+...++ |++-++ ++-+........-. ......|- .....-..++.+++++.||++
T Consensus 155 ----ISL~~iLp~l~~l~~---~~~~~v~LvKPQFEagr~~v~--kkGvv~d~------~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 155 ----ISLKLILPALLLLLK---DGGDLVLLVKPQFEAGREQVG--KKGVVRDP------KLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ----hhHHHHHHHHHHhcC---CCceEEEEecchhhhhhhhcC--cCceecCc------chHHHHHHHHHHHHhhcCcEE
Confidence 223578888888898 566444 34333322111100 00000000 011224567888999999999
Q ss_pred eEEEec
Q 023625 263 YKITPM 268 (279)
Q Consensus 263 ~~~~~~ 268 (279)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 888654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.85 Score=37.81 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred HHHHhchhhhCCCC--EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----c----------CCCCeEEeeC
Q 023625 102 IVIKDCKEVFEGLK--SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----G----------TNDNLDFLGG 164 (279)
Q Consensus 102 ~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~----------~~~ri~~~~~ 164 (279)
.++++.. ++++. +|||.=+|+|..+..++.. +++++.++. |.+....+ . ...|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4555554 45555 9999999999999999987 778999998 44333222 0 1257889999
Q ss_pred CCCC---CCC-ccceeeeh----------------hhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 165 NMFE---AIP-QANAVLLK----------------WILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 165 d~~~---~~~-~~D~v~~~----------------~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
|..+ ..+ .||+|++- .++|.+ .+.+...+|..+.++-+ -+++|=.+...
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a 223 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYA 223 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCC
Confidence 8765 222 48998861 223222 24455677777777655 57777665443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.21 Score=43.91 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=37.3
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNM 166 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~ 166 (279)
+|||+=||.|.++..+++.. -++++++. +.+++.|+. .-++++|..++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999875 46999999 888888773 236889987754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.1 Score=40.90 Aligned_cols=126 Identities=15% Similarity=0.292 Sum_probs=81.4
Q ss_pred ChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhh-hCCCCEEEEecCCccHHHHHHHHHC----CCCeEEEeeC-h
Q 023625 73 KVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEV-FEGLKSLVDVAGGTGIMARAIATAF----PDIKCTVFDL-P 146 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 146 (279)
..|+.+++||-.-..|++|+.. .+.+..+.+ .+....|+-+|+|.|-+..+.+++- ..++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~-------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILK-------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHH-------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 4577788888777777765432 233333321 1224568889999999888776643 4567788887 7
Q ss_pred hHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhH-HHHHHHHHHHhCCCCCCCcE
Q 023625 147 HVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEE-SVKLLKKCKEAIPSKDEGGK 209 (279)
Q Consensus 147 ~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~-~~~~L~~~~~~L~~~~pgG~ 209 (279)
.++...+. -..||+++..|+.+ ..| ++|++++ ..|--+.|.+ ..+-|.-+-+.|+ |+|.
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLk---pdgI 473 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLK---PDGI 473 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcC---CCce
Confidence 66654432 25899999999987 433 5898775 3444455532 2345777777889 5753
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.37 Score=42.08 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=59.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC----------------CCCeEEEeeChhHH--hhccc---------CCCC--eEE
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF----------------PDIKCTVFDLPHVV--DNLQG---------TNDN--LDF 161 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~----------------p~~~~~~~D~~~~~--~~a~~---------~~~r--i~~ 161 (279)
.+..-+|+|+||.+|..+..+...- |..+++.-|+|..= ...+. .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 3455689999999999988766531 34577777875211 10110 0122 345
Q ss_pred eeCCCCCC-CC--ccceeeehhhhccCCh-------------------------------------hHHHHHHHHHHHhC
Q 023625 162 LGGNMFEA-IP--QANAVLLKWILHNWND-------------------------------------EESVKLLKKCKEAI 201 (279)
Q Consensus 162 ~~~d~~~~-~~--~~D~v~~~~vlh~~~~-------------------------------------~~~~~~L~~~~~~L 201 (279)
++|.|+.. +| ..|+++++..||-++. .|...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899884 45 4899999888885541 12234444444567
Q ss_pred CCCCCCcEEEEEeeecCC
Q 023625 202 PSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 202 ~~~~pgG~lli~e~~~~~ 219 (279)
+ |||++++.-...++
T Consensus 174 v---~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 V---PGGRMVLTFLGRDE 188 (334)
T ss_dssp E---EEEEEEEEEEE-ST
T ss_pred c---cCcEEEEEEeeccc
Confidence 7 79999988777766
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.71 E-value=4.4 Score=35.78 Aligned_cols=105 Identities=14% Similarity=0.255 Sum_probs=70.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhcc----cC-CCCeEEeeCCCCC-C--CC---cccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQ----GT-NDNLDFLGGNMFE-A--IP---QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~~-~~ri~~~~~d~~~-~--~~---~~D~v 176 (279)
..++.+|||+-.+.|.=+..+++..++ ..++.+|. +.-+...+ .. ..++..+..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456799999999999999999998875 56789998 54444433 22 2346666666542 1 22 27888
Q ss_pred ee------hhhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 177 LL------KWIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 177 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
++ ..++ ..++.++ -.++|+++.+.+| |||.|+.....+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk---~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK---PGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEccCCc
Confidence 76 2233 2333331 2578999999999 7998887665443
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.1 Score=38.29 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=41.5
Q ss_pred CCEEEEecCCccHH-HHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeC----CCCCCC--C--cccee
Q 023625 114 LKSLVDVAGGTGIM-ARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGG----NMFEAI--P--QANAV 176 (279)
Q Consensus 114 ~~~vlDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----d~~~~~--~--~~D~v 176 (279)
..++||||+|..-. ...-++. .+.++++.|+ +..++.|++ +.++|+++.. +++... + .||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998754 4444444 4899999999 888888873 4678988654 344422 1 48988
Q ss_pred eehhhhccCCh
Q 023625 177 LLKWILHNWND 187 (279)
Q Consensus 177 ~~~~vlh~~~~ 187 (279)
++.=.+|.=.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 88777775433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.86 Score=38.59 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC--Cccce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI--PQANA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D~ 175 (279)
...++++-||+|.|.+.+...++ +.. ....+|+ ..+++..++ ...++..+.||-+. .. ..+|+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46789999999999999999987 554 4677787 566665543 25799999998764 23 35999
Q ss_pred eeehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 176 VLLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 176 v~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+.-..= -..+. --..+...+.++|| |||.+++...
T Consensus 199 ii~dssd-pvgpa~~lf~~~~~~~v~~aLk---~dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSSD-PVGPACALFQKPYFGLVLDALK---GDGVVCTQGE 237 (337)
T ss_pred EEEecCC-ccchHHHHHHHHHHHHHHHhhC---CCcEEEEecc
Confidence 9873210 00111 11245566778999 6888777653
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.7 Score=41.26 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC-C--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI-P--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~v~~~~v 181 (279)
+...|||||.|||.++...+++..+ .++.++. .++.+.|+. ..++|+++.---.+ .+ | .+|+++-..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4567999999999999988888644 5888888 888888874 25677776543322 22 2 2676655444
Q ss_pred hccCChhHHHHHHHHHHHhCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~ 202 (279)
.-.+--+.+..-++++.+.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333333445556777776664
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.35 Score=43.88 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=43.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMF 167 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~ 167 (279)
++..+.++||=||||..+.++++. -.+++++.+ |+.++-|+. ...+.+|++|-..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 567789999999999999999886 456888888 888877763 2368899999443
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.15 E-value=8.1 Score=34.37 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHH----HC---CCCeEEEeeChh-----HHhh--------cccCCCCeE
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIAT----AF---PDIKCTVFDLPH-----VVDN--------LQGTNDNLD 160 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~----~~---p~~~~~~~D~~~-----~~~~--------a~~~~~ri~ 160 (279)
+.|++++. -...-+|+|+|.|.|.-=..|.+ +. |.+++|+++.|. .++. |+...-..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45777765 34567899999999974444444 32 778999999732 2222 222233455
Q ss_pred EeeC--CCCCCC--------C-ccceeeehhhhccCChh------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 161 FLGG--NMFEAI--------P-QANAVLLKWILHNWNDE------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 161 ~~~~--d~~~~~--------~-~~D~v~~~~vlh~~~~~------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|... +-.+.. + .+=+|-+..-||++.++ ....+|+.++ .|+| . .++++|.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P---~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP---K-VVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC---C-EEEEEeecCCC
Confidence 5552 222211 1 13344455667887633 2345676665 6774 4 56666655443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.91 Score=40.34 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=53.6
Q ss_pred cccCCCCeEEeeCCCCC---CC--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 152 LQGTNDNLDFLGGNMFE---AI--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 152 a~~~~~ri~~~~~d~~~---~~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.++..+|++++.+++.+ .. ..+|.+++...+--+++++..++++.+.++++ |||+|+.-....+.
T Consensus 270 lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~---pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 270 LRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR---PGARVLWRSAAVPP 339 (380)
T ss_pred HhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC---CCCEEEEeeCCCCC
Confidence 34445999999999876 23 25999999999988899999999999999999 79999987765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.37 E-value=4.3 Score=36.10 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=62.4
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee---CC-CCCC---C---Cccceeee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG---GN-MFEA---I---PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---~d-~~~~---~---~~~D~v~~ 178 (279)
..+..+|+.+|+|. |..+..++++....++++.|. ++..+.+++.. ...++. .+ +.+. . .++|+++-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 45567899999988 999999999986546888887 77777766531 122221 11 1111 1 14777765
Q ss_pred hh---------------hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KW---------------ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~---------------vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.- +|+..++. ...++.+.+.++ |+|+++++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVR---KGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCc--hHHHHHHHHHhc---cCCEEEEEcC
Confidence 31 12222222 356788889999 7999988754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=89.07 E-value=6.7 Score=30.51 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=72.3
Q ss_pred EecCCccHHHHHHHHHCC---CCeEEEeeC-hhHHhhcc-------cC-CCCeEEe-eCCCCC---CC--C--ccceeee
Q 023625 119 DVAGGTGIMARAIATAFP---DIKCTVFDL-PHVVDNLQ-------GT-NDNLDFL-GGNMFE---AI--P--QANAVLL 178 (279)
Q Consensus 119 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~-------~~-~~ri~~~-~~d~~~---~~--~--~~D~v~~ 178 (279)
=||=|.=.++.+|++++. ++.++.+|. .+..+.-. .+ ...+.+. ..|..+ .. . .||.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999987 445677776 33333322 11 1233332 224433 12 1 4999998
Q ss_pred hhhhcc-----------CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 179 KWILHN-----------WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 179 ~~vlh~-----------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
.+.--. .+.+-...+++.+.+.|+ ++|.|.|.=.--. .++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~---~~G~IhVTl~~~~--------------------------py~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK---PDGEIHVTLKDGQ--------------------------PYD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC--------------------------CCc
Confidence 664332 112344578889999999 6898877321110 011
Q ss_pred HHHHHHHHHHCCCceeEEEecC
Q 023625 248 VDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
.=.+.++.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 1134578888999988887653
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.8 Score=35.38 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=63.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC----CC--C---eEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF----PD--I---KCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~- 171 (279)
+.+-.++||+=...|.++.-+.++. |. . +.+.+|+..+.. -+.|.-+.+|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 5677899999999999999888865 21 1 388889865543 24666777887653 12
Q ss_pred -ccceeeehh-----hhccCCh----hHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 172 -QANAVLLKW-----ILHNWND----EESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 172 -~~D~v~~~~-----vlh~~~~----~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+|+|++-. -+|++.. +-....|.-...+|+ |||.++
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk---~Gg~FV 160 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK---PGGSFV 160 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec---CCCeee
Confidence 389888743 4666543 233455666677889 798765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.74 E-value=3 Score=36.66 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=65.7
Q ss_pred CEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCC-eEEeeCC-CC----C-CCC-ccceeeehhhhc
Q 023625 115 KSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDN-LDFLGGN-MF----E-AIP-QANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~d-~~----~-~~~-~~D~v~~~~vlh 183 (279)
.+|+=+|+|+ |.++..+++.+.-.++++.|. +.-++.|++ .... +.....+ .. + ..+ ++|+++-..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3999999996 777788899888889999999 888999886 3222 2222221 10 1 112 5899886543
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
....+..+.++++ |||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r---~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALR---PGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhc---CCCEEEEEeccCCc
Confidence 1246778888899 79999998876554
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.16 E-value=1 Score=37.79 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCC
Q 023625 127 MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKD 205 (279)
Q Consensus 127 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~ 205 (279)
++.+|.++.+..++++.|. +..++.+.+. +-+.-...+ .+...++|+|+++- |......+|+++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~--- 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLK--- 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS----
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcC---
Confidence 4678888889999999999 8888888654 222222222 12234689999864 55678899999999888
Q ss_pred CCcEE
Q 023625 206 EGGKV 210 (279)
Q Consensus 206 pgG~l 210 (279)
+|..+
T Consensus 71 ~~~iv 75 (258)
T PF02153_consen 71 PGAIV 75 (258)
T ss_dssp TTSEE
T ss_pred CCcEE
Confidence 56533
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.4 Score=34.32 Aligned_cols=124 Identities=10% Similarity=0.176 Sum_probs=71.9
Q ss_pred EEEEecCCccHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCCCCeEEeeCCCCC-C----CCccceeeehhhhccCCh-
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A----IPQANAVLLKWILHNWND- 187 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~----~~~~D~v~~~~vlh~~~~- 187 (279)
+++|+=||.|.++..+.+.. .+ +...|. +..++..+..-+. .+..+|+.+ . .+.+|+++..-....++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999999988864 44 667888 6666655543111 245566654 1 235888887554433321
Q ss_pred -------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 188 -------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 188 -------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+....++.+..+.++. -.-+++++|.+..-... .......++.+.|++.||
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~--~~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKE--KKPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGY 136 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHh--cCCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCc
Confidence 1122344444444432 12457888876432110 011245678888899998
Q ss_pred ceeE
Q 023625 261 SHYK 264 (279)
Q Consensus 261 ~~~~ 264 (279)
.+..
T Consensus 137 ~~~~ 140 (275)
T cd00315 137 NVYW 140 (275)
T ss_pred EEEE
Confidence 8543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.4 Score=36.14 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=69.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcc----cC-CCCeEEeeCCCCCC----CC-ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQ----GT-NDNLDFLGGNMFEA----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~-~~ri~~~~~d~~~~----~~-~~D~v~~ 178 (279)
..++.+|||+-++.|.=+..+++... ...++..|+ +.-+...+ .. ...+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678999999999999999999987 568999998 55554443 22 35666666665442 12 3787776
Q ss_pred ------hhhhccCCh-------h-------HHHHHHHHHHHhC----CCCCCCcEEEEEeee
Q 023625 179 ------KWILHNWND-------E-------ESVKLLKKCKEAI----PSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ------~~vlh~~~~-------~-------~~~~~L~~~~~~L----~~~~pgG~lli~e~~ 216 (279)
..++..-++ + --.++|+++.+.+ + |||+++...--
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k---~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK---PGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE---EEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc---CCCeEEEEecc
Confidence 112222221 1 1257899999999 9 79988876643
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.50 E-value=1.2 Score=39.05 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=33.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh-hHHhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP-HVVDNLQ 153 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~ 153 (279)
+.+...++|||.|.|+++.-+.-.| ++.+.++|-. ...+.|+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence 6788999999999999999888776 5789999973 3344443
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.2 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-----CCCeEEEeeChh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-----PDIKCTVFDLPH 147 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~ 147 (279)
+.+...++|+|||.|.++..+++.. +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4677899999999999999999998 567899999743
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.77 E-value=5 Score=34.62 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC----------CC--cccee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA----------IP--QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----------~~--~~D~v 176 (279)
+....+||=+|+|+ |.++...++++.-.++++.|+ +.-++.|++.+............+ .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56688999999985 888888889988889999999 899999997533322222221111 11 27888
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+-...++ .-++-+..+++ +||.++++..-
T Consensus 247 ~dCsG~~--------~~~~aai~a~r---~gGt~vlvg~g 275 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATR---SGGTVVLVGMG 275 (354)
T ss_pred EEccCch--------HHHHHHHHHhc---cCCEEEEeccC
Confidence 8776654 34556677888 69998777743
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.1 Score=41.19 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCEEEEecCCccHHHHHHHHHC-------C-----CCeEEEeeC-h---hHHhhcc----------------------c-
Q 023625 114 LKSLVDVAGGTGIMARAIATAF-------P-----DIKCTVFDL-P---HVVDNLQ----------------------G- 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~- 154 (279)
.-+|+|+|=|+|......++.+ | .++++.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999888777655 4 467888885 3 1111110 0
Q ss_pred -----CCC--CeEEeeCCCCCC---CC-ccceeeehhhhc-cCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 155 -----TND--NLDFLGGNMFEA---IP-QANAVLLKWILH-NWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 155 -----~~~--ri~~~~~d~~~~---~~-~~D~v~~~~vlh-~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
..+ ++++..||+.+- .. .+|++++--.-- .-++=-...+++++++.++ |||++.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~---~~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR---PGATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC---CCCEEE
Confidence 012 233556776542 22 488888732110 0011112367888999899 688765
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.84 E-value=1.4 Score=36.82 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=26.0
Q ss_pred CCEEEEecCCccHHHHHHHHHCC--------CCeEEEeeChhH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFP--------DIKCTVFDLPHV 148 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~ 148 (279)
.-+|+|+|+|+|.++..+++... .+++++++..+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 36999999999999999988653 358999998433
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.74 E-value=6.4 Score=33.82 Aligned_cols=89 Identities=16% Similarity=0.028 Sum_probs=50.1
Q ss_pred CCEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 114 LKSLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 114 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
..+|.=||+|. +.++..+.+.....+++++|. ++..+.++....... ...+..+...++|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 45788888775 234444444333247899998 666666654311111 1112211234689988854 33445
Q ss_pred HHHHHHHHHhCCCCCCCcEEE
Q 023625 191 VKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~ll 211 (279)
..+++.+...++ ++..+.
T Consensus 80 ~~v~~~l~~~l~---~~~iv~ 97 (307)
T PRK07502 80 GAVAAEIAPHLK---PGAIVT 97 (307)
T ss_pred HHHHHHHHhhCC---CCCEEE
Confidence 667788877888 565443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=6.8 Score=36.34 Aligned_cols=96 Identities=13% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCC-eEEeeC---------------CCC-------
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDN-LDFLGG---------------NMF------- 167 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r-i~~~~~---------------d~~------- 167 (279)
+..+|+=+|+|. |..++..++... ++++++|. ++..+.++..+.. +.+-.. ++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 578999999886 666667777664 58999999 8888888875333 111110 110
Q ss_pred CC-CCccceeeehhhhccCChhHHHHH-HHHHHHhCCCCCCCcEEEEEee
Q 023625 168 EA-IPQANAVLLKWILHNWNDEESVKL-LKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 168 ~~-~~~~D~v~~~~vlh~~~~~~~~~~-L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+ ..++|+++-..-. +...+..+ .+...+.++ |||.++.+-.
T Consensus 243 ~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mk---pGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALI---PGKPAPKLITAEMVASMK---PGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCC---CcccCcchHHHHHHHhcC---CCCEEEEEcc
Confidence 00 1358998875532 22112234 589999999 7998776643
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=83.33 E-value=3.6 Score=28.77 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=48.8
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh--hcCCeeC-------CHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS--LFRGKER-------SVDDWK 252 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~r-------~~~e~~ 252 (279)
|=|.+.++..++|.++....+ +.+++.= -|.. + ++.+...+ .+.+..| .++++.
T Consensus 5 LIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T----~------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~ 67 (97)
T PF07109_consen 5 LIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRT----P------LLALMHAIGKLFPRPDRSPRIYPHREEDLR 67 (97)
T ss_pred EeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCC----H------HHHHHHHHhccCCCCCCCCcEEEeCHHHHH
Confidence 335788999999999988766 5555521 1111 0 11111111 1223333 778999
Q ss_pred HHHHHCCCceeEEEecC-Cce--eEEEEeC
Q 023625 253 KLFLAAGFSHYKITPML-GVR--SLIEAYP 279 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~-~~~--~~i~~~~ 279 (279)
+.++++||++.+...+. +++ .++|++|
T Consensus 68 ~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 68 RALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999998887764 332 3555543
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.83 E-value=9.7 Score=32.24 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=47.3
Q ss_pred EEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHH
Q 023625 116 SLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~ 192 (279)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+... ..+.....+. +...++|+|++.- +++...+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER-GLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC-CCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 455677664 4455555544 457999998 6677666543 1122111111 1234589998853 5666778
Q ss_pred HHHHHHHhCC
Q 023625 193 LLKKCKEAIP 202 (279)
Q Consensus 193 ~L~~~~~~L~ 202 (279)
+++++.+.++
T Consensus 73 ~~~~l~~~l~ 82 (279)
T PRK07417 73 PSEQLIPALP 82 (279)
T ss_pred HHHHHHHhCC
Confidence 8999988888
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=80.46 E-value=11 Score=27.80 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCc
Q 023625 192 KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGV 271 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~ 271 (279)
.+++++++.++ |||.+.-.. ....+++-|.++||.+.+....++-
T Consensus 71 e~~~~l~~~~~---~~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 71 ELFKKLARLSK---PGGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp HHHHHHHHHEE---EEEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred HHHHHHHHHhC---CCcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 57999999999 687654311 1234788999999998877766665
Q ss_pred eeEEEEe
Q 023625 272 RSLIEAY 278 (279)
Q Consensus 272 ~~~i~~~ 278 (279)
..++.+.
T Consensus 116 r~~~~a~ 122 (124)
T PF05430_consen 116 REMLRAV 122 (124)
T ss_dssp SEEEEEE
T ss_pred chheEEE
Confidence 5555443
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=80.35 E-value=4 Score=30.72 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=46.6
Q ss_pred eEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC--ccceeeehhhhccCC---------hhHHHHHHHHH
Q 023625 139 KCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP--QANAVLLKWILHNWN---------DEESVKLLKKC 197 (279)
Q Consensus 139 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh~~~---------~~~~~~~L~~~ 197 (279)
++.+||+ +++++.+++ ..+|++++..+=.. -.+ ..|++++.. -.+| .+...+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 888888774 24689888765433 123 477777642 1122 33567889999
Q ss_pred HHhCCCCCCCcEEEEEee
Q 023625 198 KEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 198 ~~~L~~~~pgG~lli~e~ 215 (279)
.+.|+ |||.+.|+-.
T Consensus 79 l~lL~---~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLK---PGGIITIVVY 93 (140)
T ss_dssp HHHEE---EEEEEEEEE-
T ss_pred HHhhc---cCCEEEEEEe
Confidence 99999 7998887653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 279 | ||||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 5e-72 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-69 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-68 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 2e-63 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-63 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-63 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 2e-30 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 3e-30 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 2e-27 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 1e-26 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-23 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-16 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 7e-16 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 1e-15 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 5e-13 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-12 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 2e-11 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 2e-11 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 7e-10 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 8e-08 |
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = e-120
Identities = 130/281 (46%), Positives = 186/281 (66%), Gaps = 5/281 (1%)
Query: 1 MRILVHSGFFAQQKDDE--YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWL 58
MR L H+GFF +E Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLV 118
+D +LF G WD + P++ + F D M +DS+LI + ++DC VF+GL+S+V
Sbjct: 135 YEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN-LALRDCDFVFDGLESIV 193
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLL 178
DV GGTG A+ I FP +KC VFD P VV+NL G+ +NL ++GG+MF +IP A+AVLL
Sbjct: 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIPNADAVLL 252
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238
K+ILHNW D++ +++LKKCKEA+ + + GKV IIDM I+ + + + + +L D+ M
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA 312
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 313 -CLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-114
Identities = 66/283 (23%), Positives = 122/283 (43%), Gaps = 15/283 (5%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
+R+L + D + LT L D+P+ A + + D ++ T H + + L
Sbjct: 76 LRLLAVRDVVRES-DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGP 134
Query: 61 DDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDV 120
+ P+ F G + + + ++L+Y+ M T S I+ + F ++ DV
Sbjct: 135 ERPA-FADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG--DFPATGTVADV 191
Query: 121 AGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ----GTNDNLDFLGGNMFEAIPQANAV 176
GG G + P ++ + D VV + + G+ +P A+
Sbjct: 192 GGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVH 251
Query: 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL 236
+LK ILHNW DE+SV++L C+ +P+ G+V++ID + + D +
Sbjct: 252 VLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVP----EGNDAHQSKEMDFM 304
Query: 237 MVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
M++ G+ER+ + + LF AAG ++ V S+ P
Sbjct: 305 MLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 325 bits (834), Expect = e-111
Identities = 133/292 (45%), Positives = 186/292 (63%), Gaps = 15/292 (5%)
Query: 1 MRILVHSGFFAQQKDDE----------YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTA 50
+R+L H+GFFA+ Y LTP S+LL+ P + V P
Sbjct: 69 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDM 128
Query: 51 FHCLGTWLQND-DPSLFETAHGKKVWDRVADEPKFKSL--FYDLMITDSELIAGIVIKDC 107
+ W D + +LFE A G+ WD + + + +L F D M +DS + +V+++
Sbjct: 129 WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQEN 187
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
K VFEGL+SLVDV GGTG + + I FP +KCTVFD P VV NL G +NL+F+GG+MF
Sbjct: 188 KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMF 246
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
++IP A+AVLLKW+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+
Sbjct: 247 KSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 306
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E QL +D++M+++F GKER+ +W+KL AGFS YKITP+ G +SLIE YP
Sbjct: 307 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 322 bits (826), Expect = e-110
Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 20/288 (6%)
Query: 1 MRILVHSGFFAQQKDDEYF-LTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQ 59
+R+L G F D+ F S +LL D A A P + A+ L ++
Sbjct: 92 LRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVR 151
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
+ S F+ A+G W ++PK + LF M + S AG V F G + VD
Sbjct: 152 TGEAS-FDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY--DFSGAATAVD 208
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIPQ- 172
+ GG G + A+ AFP ++ T+ + P V + + G D + L G+ FE IP
Sbjct: 209 IGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDG 268
Query: 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232
A+ L+K +LH+W+D++ V++L++ A+ ++++ID I D+ + L
Sbjct: 269 ADVYLIKHVLHDWDDDDVVRILRRIATAMK---PDSRLLVIDNLI-----DERPAASTLF 320
Query: 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM-LGVRSLIEAYP 279
D+L++ L G ERS ++ L +G + P G ++E
Sbjct: 321 VDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = e-109
Identities = 72/292 (24%), Positives = 132/292 (45%), Gaps = 22/292 (7%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLV-ADPLYTTAFHCLGTWLQ 59
+R LV G + E+ T LL D P + DL A +F L ++
Sbjct: 73 IRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIR 132
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
P+ +E+ +GK ++ +A P ++ F L+ D ++ + ++ ++D
Sbjct: 133 TGRPT-YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLD 189
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIPQ- 172
V GG G A AIA P + TV ++ VD + G +D +D + G+ FE +P+
Sbjct: 190 VGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRK 249
Query: 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232
A+A++L ++L NW D ++V++L +C EA+ GG+++I + + + E
Sbjct: 250 ADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDLH---ENSFNEQFTE 303
Query: 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG-----VRSLIEAYP 279
D+ M+ G R+ + W L +AG ++ + SL+ P
Sbjct: 304 LDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 311 bits (799), Expect = e-106
Identities = 73/288 (25%), Positives = 131/288 (45%), Gaps = 15/288 (5%)
Query: 1 MRILVHSGFFAQQKDDE--------YFLTPASRLLLKDTPLKA-APFVDLVADPLYTTAF 51
+R+L Y L+ + L+ D A F + P +
Sbjct: 89 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVW 148
Query: 52 HCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF 111
+ ++D LF+ HG ++ + + K +F M+ ++ + F
Sbjct: 149 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGF 207
Query: 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIP 171
EG+ +LVDV GG+G I + +P IK FDLP V++N ++ +GG+MF ++P
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-SGIEHVGGDMFASVP 266
Query: 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231
Q +A++LK + HNW+DE+ ++ L C +A+ GKVII++ + + E +
Sbjct: 267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALS---PNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 232 CFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEAY 278
D LM G+ER+ ++KL +GFS +++ ++E Y
Sbjct: 324 TLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-106
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 22/287 (7%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYT-TAFHCLGTWLQ 59
+R LV G F + Y LT L D ++D+ + F L ++
Sbjct: 59 LRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIR 118
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
P+ + +G W+ + +P + F LM EL + + L +VD
Sbjct: 119 TGQPA-YPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVD 175
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIPQ- 172
V GG+G + A+ TA D+ TV DL G + + G+ F+ +P
Sbjct: 176 VGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAG 235
Query: 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232
A +L +LH+W+D +V +L++C EA S GG V++I+ ++
Sbjct: 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDEH-------AGTG 285
Query: 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
D+ M++ F GKERS+ + +L AG + P + S++E
Sbjct: 286 MDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP-ISYVSIVEMTA 331
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-105
Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)
Query: 1 MRILVHSGFFAQQKDDE--------YFLTPASRLLLKDTPLKA-APFVDLVADPLYTTAF 51
+R+L + Y L P + L K+ + APF+ L D + +
Sbjct: 84 LRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW 143
Query: 52 HCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF 111
L + + F A+G ++D + + +F M ++S + +++ F
Sbjct: 144 FYLKDAIL-EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYN-GF 201
Query: 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIP 171
EGL ++VDV GGTG +A I +P I FDLPHV+ + ++ LGG+MF+ +P
Sbjct: 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-SGVEHLGGDMFDGVP 260
Query: 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231
+ +A+ +KWI H+W+DE +KLLK C A+P + GKVI+ + + + + +
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 232 CFDILM-VSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278
D LM GKER+ +++ L +A+GF +K+ ++E
Sbjct: 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-105
Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 23/287 (8%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
MR+LV F D Y TP S LL +D V + + A+ L +
Sbjct: 62 MRLLVAFEIFQGDTRDGYANTPTSHLL-RDVEGSFRDMVLFYGEEFHA-AWTPACEALLS 119
Query: 61 DDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFE-GLKSLVD 119
P FE A G+ + + P F M + + + + + +S VD
Sbjct: 120 GTPG-FELAFGEDFYSYLKRCPDAGRRFLLAMKASN-----LAFHEIPRLLDFRGRSFVD 173
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIP-Q 172
V GG+G + +AI A P + + D + + + + +GG+M + +P
Sbjct: 174 VGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSN 233
Query: 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232
+ LL I+ + ++ S++LL C+EA+ G+V++I+ I E +
Sbjct: 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTIS----ASEPSPMSVL 286
Query: 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
+D+ + G+ R+ ++ L GF+ +I + +I A
Sbjct: 287 WDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = e-104
Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 23/294 (7%)
Query: 1 MRILVHSGFFAQQKDDE--YFLTPASRLLLKDTPLKAAPFVDLVADPLYT-TAFHCLGTW 57
+R L G + T LL P + ++DL + AF L
Sbjct: 70 VRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDV 129
Query: 58 LQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSL 117
++ P+ + +G+ W+ ++ + F LM D +L + ++ +
Sbjct: 130 VRTGRPA-YAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHV 186
Query: 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIP 171
+DV GG G M AIA P ++ T+ +L + + G D + G+ F+ +P
Sbjct: 187 LDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLP 246
Query: 172 Q-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ 230
A+ VLL ++L NW+DE+++ +L+ C A+ GG+++++D A D
Sbjct: 247 VTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVE--GDGADRFFS 301
Query: 231 LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVR-----SLIEAYP 279
D+ M++ G+ R+ D+ L +AG + S++E
Sbjct: 302 TLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-104
Identities = 77/288 (26%), Positives = 134/288 (46%), Gaps = 16/288 (5%)
Query: 1 MRILVHSGFFAQQKDDE--------YFLTPASRLLLKDTPLKA-APFVDLVADPLYTTAF 51
+R+L ++ Y P + L + + A + D + ++
Sbjct: 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 141
Query: 52 HCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF 111
+ L + D F A+G ++ +P+F +F + M S +I ++ + F
Sbjct: 142 YYLKDAVL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGF 199
Query: 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIP 171
EGL +LVDV GG G AIA +P IK FDLPHV+ + +GG+MF+ +P
Sbjct: 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-PGVTHVGGDMFKEVP 258
Query: 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231
+ +L+KWILH+W+D+ LLK C +A+P+ GKV+++ + + S +
Sbjct: 259 SGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVF 315
Query: 232 CFDILMVSLF-RGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278
D++M++ G+ER +++ L AGF+ K T + IE
Sbjct: 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 9e-95
Identities = 53/286 (18%), Positives = 120/286 (41%), Gaps = 18/286 (6%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
+ L + D ++ LT + + TP + VA AF ++
Sbjct: 85 LETLRQMRVINLE-DGKWSLTEFADYMFSPTPKEPNLHQTPVAKA---MAFLADDFYMGL 140
Query: 61 DDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDV 120
++ + K + F ++ ++++ +++++ K +G+K ++DV
Sbjct: 141 SQ-AVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDV 197
Query: 121 AGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMF-EAIPQA 173
GG G ++ A+ FP++ T+ +LP +D + G D + + +++ E+ P+A
Sbjct: 198 GGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA 257
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
+AVL IL++ N++ S + KK +A+ S GG+++I+DM I++ +
Sbjct: 258 DAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPNFDYLSHYIL 314
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
M + +K++ + G+ + + P
Sbjct: 315 GAGMPFSV-LGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 1e-80
Identities = 57/289 (19%), Positives = 113/289 (39%), Gaps = 25/289 (8%)
Query: 1 MRILVHSGFFAQQKDDEYFLTP-ASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQ 59
LV GF +Q + Y LT ++ L + + ++ + P+ T F+ L +
Sbjct: 60 CDYLVIIGFMTKQ-AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVL 118
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
++ ++ E F M A ++ + E ++D
Sbjct: 119 KGGTAISS-------EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLD 171
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEA--IP 171
++ G+ A+A P+ + D V++ + G + G+ FE
Sbjct: 172 ISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN 231
Query: 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231
+ VLL LH+++ +LL+K K A+ GKVI+ D + D+ +
Sbjct: 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALA---VEGKVIVFDFIPNS---DRITPPDAA 285
Query: 232 CFDILM-VSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRS-LIEAY 278
F ++M + G + +++ +F AGFSH ++ + + +I AY
Sbjct: 286 AFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 1e-73
Identities = 55/292 (18%), Positives = 112/292 (38%), Gaps = 25/292 (8%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQN 60
+ + G + +D Y L A LL D A ++ D Y L L N
Sbjct: 71 LEASLTIGTILLE-EDRYVLAKAGWFLLNDKM--ARVNMEFNHDVNYQ-GLFHLEEALLN 126
Query: 61 DDPSLFETAHGK--KVWDRVADEPKFKSLFYDLMITD-SELIAGIVIKDCKEVFEGLKSL 117
P G+ +++ ++ P+ + S+ G ++ K L
Sbjct: 127 GRPE-GLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRL 183
Query: 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFE--- 168
+D+ G TG A +++ T+ DLP ++ ++ ++ + G N+ +
Sbjct: 184 LDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDV 243
Query: 169 AIPQ-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
P +AV + L +++EE + +L + ++I + KV I++ + Q + S
Sbjct: 244 PFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG---KDSKVYIMETLWDRQRYETASY 300
Query: 228 -ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGV-RSLIEA 277
TQ+ ++ K DD + AG +I +G+ S+++
Sbjct: 301 CLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-72
Identities = 57/290 (19%), Positives = 113/290 (38%), Gaps = 34/290 (11%)
Query: 1 MRILVHSGFFAQQKDDEYFLTP-ASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQ 59
+ L G ++ D + T R L + P V+ L + LG L+
Sbjct: 77 LHALAALGLL-TKEGDAFRNTALTERYLTTTSADYIGPIVEH--QYLQWDNWPRLGEILR 133
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
++ P + R A + + + F D M+ S+ + +V + VF ++++D
Sbjct: 134 SEKP------LAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG--VFARARTVID 185
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIP-- 171
+AGG G + P + ++DLP D + ++F N+ +A
Sbjct: 186 LAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245
Query: 172 --QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET 229
A+ V+L LH ++ E+ +++ + GG ++I+ M + + D+ +
Sbjct: 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMND---DRVTPAL 299
Query: 230 QLCFDILM-VSLFRGKERSVDDWKKLFLAAGF-----SHYKITPMLGVRS 273
F + M V+ G+ + AG S + T ++G RS
Sbjct: 300 SADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQRS 349
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 6e-10
Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 37/215 (17%)
Query: 72 KKVWDRVADEPKFKSLFYDLMITDS----ELIAGIVIKDCKEVFEGLKSLVDVAGGTGIM 127
K+ +D V+ + YD + G+ + E ++D+ GTG++
Sbjct: 7 KRKFDAVSGK-------YDEQRRKFIPCFDDFYGVSVSIASVDTEN-PDILDLGAGTGLL 58
Query: 128 ARAIATAFPDIKCTVFDLP----HVVDNLQGTNDNLDFLGGNMFEAIP---QANAVLLKW 180
+ + +P+ T+ D+ + N N + ++ + + + V+
Sbjct: 59 SAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYDFEEKYDMVVSAL 117
Query: 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240
+H+ DE+ +L K+ + E G I D+ + + + + + S
Sbjct: 118 SIHHLEDEDKKELYKRSYSIL---KESGIFINADLVHGETAFIENLNK-TIWRQYVENSG 173
Query: 241 FRGKE-------------RSVDDWKKLFLAAGFSH 262
+E ++ AGF
Sbjct: 174 LTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRD 208
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-09
Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 31/225 (13%)
Query: 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL-----KSLVDVAGGTGI 126
++D A YD + ++ V +++ E + ++++ GTG
Sbjct: 6 NGLFDEWAHT-------YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGN 58
Query: 127 MARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFEAIPQAN---AVLLKWI 181
+ + A + + + + G+ + ++ +
Sbjct: 59 LTNKLLLAGRTV--YGIEPSREMRMIAKEKLPKEFSITEGDF-LSFEVPTSIDTIVSTYA 115
Query: 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF 241
H+ D+E + K + + +GGK++ D +Q +++E ++
Sbjct: 116 FHHLTDDEKNVAIAKYSQLLN---KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAND 172
Query: 242 RGKER--SVDDWKKLFLAAGFS------HYKITPMLGVRSLIEAY 278
E + + +F GF ++ + M + L +
Sbjct: 173 LQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVMEATKQLEHHH 217
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 34/214 (15%)
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL---- 114
DP + W V ++ + + + I+ + L
Sbjct: 41 DLYDPEKGWYGKALEYWRTV-------PATVSGVLGGMDHVHDVDIEGSRNFIASLPGHG 93
Query: 115 -KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ---GTNDNLDFLGGNMFEAI 170
+D G G + + + T + + H+++ + F+ +M A
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT 153
Query: 171 PQAN---AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
N ++++W D + VK K C++A+ G + + + D+
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL---TPNGYIFFKEN---CSTGDRF-- 205
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261
D SL RS +K+LF +G
Sbjct: 206 ----LVDKEDSSLT----RSDIHYKRLFNESGVR 231
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-07
Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 46/222 (20%)
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
D H +++R +E Y+ ++ K + + + +
Sbjct: 2 GSDKIHHHHHHMWHIFERFVNE-------YERWFLVHRFAYLSELQAVKCLLPEGRGV-E 53
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQAN---- 174
+ GTG A + + + + + L G E +P +
Sbjct: 54 IGVGTGRFAVPLK------IKIGVEPSERMAE--IARKRGVFVLKGTA-ENLPLKDESFD 104
Query: 175 AVLLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET 229
L+ + +D +E+ ++LKK GG +I+ + D+ES
Sbjct: 105 FALMVTTICFVDDPERALKEAYRILKK----------GGYLIVGIV-------DRESFLG 147
Query: 230 QLCFDILMVSLFRGKER--SVDDWKKLFLAAGFSHYKITPML 269
+ S+F R S ++ L AGF +K+ L
Sbjct: 148 REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 41/221 (18%)
Query: 69 AHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGL----KSLVDVAGGT 124
+ KK +D+ + D + L A I + + + +D+ G
Sbjct: 3 SENKKKFDKKG------AKNMDEI--SKTLFAPIYPIIAENIINRFGITAGTCIDIGSGP 54
Query: 125 GIMARAIATAFPDIKCTVFDL-PHVVD------NLQGTNDNLDFLGGNMFEAIP----QA 173
G ++ A+A D D H+ + ND + + G+ IP A
Sbjct: 55 GALSIALA-KQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-VHNIPIEDNYA 112
Query: 174 NAVLLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228
+ ++ + + W D E ++LK GGK I + +D S E
Sbjct: 113 DLIVSRGSVFFWEDVATAFREIYRILKS----------GGKTYIGGGFGNKELRDSISAE 162
Query: 229 TQLCF-DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268
D + + +V+ ++ + G S Y+I
Sbjct: 163 MIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILG 203
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 5e-06
Identities = 46/343 (13%), Positives = 85/343 (24%), Gaps = 115/343 (33%)
Query: 9 FFAQQKDDEY-FLTPASRLLLKDTPLKAAPFVDLVADPLYTTA-------------FHCL 54
F + Y FL + + + +++ D LY + L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 55 GTWLQNDDPSLFETAH-----GKKV--------------------WDRVA--DEPK---- 83
L P+ GK W + + P+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 84 -FKSLFYDLMITDSELIAG-----IVIKDCKEVFEGL-------KSLV---DVAGGTGIM 127
+ L Y + + + I + L L+ +V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------ 254
Query: 128 ARAIATAFPDIKCTVFDLPHVVDNLQGTND--NLDFLGGNMFEAIPQANAVLLKWILHNW 185
AF ++ C + L T DFL I L
Sbjct: 255 NAKAWNAF-NLSCKI---------LLTTRFKQVTDFLSAATTTHIS------LDHHSMTL 298
Query: 186 NDEESVKLLKKC----KEAIPSKDEGG-----KVI---IIDMAI-----ENQSQDKESME 228
+E LL K + +P + +I I D ++ + DK +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 229 TQLCFDILMVSLFRGKERSVDDWKKLFLAAG-F-SHYKITPML 269
+ ++L +++K+F F I +L
Sbjct: 359 IESSLNVL----------EPAEYRKMFDRLSVFPPSAHIPTIL 391
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 32/169 (18%)
Query: 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFD-----LPHVVDNLQGTN-DNLDFLGGNMFE 168
+ ++DVA G G +A A A + FD L ++G ++++ G+ E
Sbjct: 39 EEVLDVATGGGHVANAFAPFVKKV--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-E 95
Query: 169 AIPQAN----AVLLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219
+P + V + H++ + E+ ++LKK GG+++++D +
Sbjct: 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKK----------GGQLLLVDNSAPE 145
Query: 220 QSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268
S R DW K+ AGF ++
Sbjct: 146 NDAFDVFY--NYVEKERDYSHHRA--WKKSDWLKMLEEAGFELEELHCF 190
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-05
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 34/167 (20%)
Query: 117 LVDVAGGTGIMARAIATAFPDIKCTVFD-----LPHVVDNLQGTN-DNLDFLGGNMFEAI 170
++D+ G G A A + + D + Q +N+ F G E++
Sbjct: 25 VLDIGAGAGHTALAFSPYVQEC--IGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESL 81
Query: 171 PQAN----AVLLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDM-AIENQ 220
P + + ++ H+++D E ++LK+ G+ +++D A E+
Sbjct: 82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQ----------DGRFLLVDHYAPEDP 131
Query: 221 SQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267
D+ D V S+ +W+ +F A ++ I
Sbjct: 132 VLDEFVNHLNRLRDPSHVRES-----SLSEWQAMFSANQLAYQDIQK 173
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 6e-05
Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 27/159 (16%)
Query: 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-----DNLDFLGGN 165
G +D G G + + + + + D+ + + ++
Sbjct: 78 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136
Query: 166 MFEAIPQAN---AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ 222
+ + P+ + + ++W++ + D+ + L++CK ++ G ++I D +
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQEGV- 192
Query: 223 DKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261
D + S+ R +D +++ +AG S
Sbjct: 193 ---------ILDDVDSSVC----RDLDVVRRIICSAGLS 218
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 9e-05
Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 28/169 (16%)
Query: 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVD----NLQGTN-DNLDFLGGNMFEA 169
+++ G G +A PD + T D+ P ++ N + N+ FL N +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN-IFS 98
Query: 170 IPQAN----AVLLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220
+P + + + ++L + + K+LK GG + +I+ +
Sbjct: 99 LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKP----------GGTITVIEGDHGSC 148
Query: 221 SQDKESMETQLCFDIL--MVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267
E + ++ L + + +G L +GF ++ P
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEP 197
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 38/205 (18%)
Query: 74 VWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKS---LVDVAGGTGIMARA 130
R A YD + +AG + +++ GTG +A
Sbjct: 4 ALLRAAYA-------YDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALP 56
Query: 131 IATAFPDIKCTVFD-----LPHVVDNLQGTNDNLDFLGGNMFEAIPQAN----AVLLKWI 181
+ D L + G + + + + AIP + V++ +
Sbjct: 57 LIARGYRY--IALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHL 113
Query: 182 LHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL 236
H D E++++LK P GG ++ E + +
Sbjct: 114 WHLVPDWPKVLAEAIRVLK------P----GGALLEGWDQAEASPEWTLQERWRAFAAEE 163
Query: 237 MVSLFRGKE-RSVDDWKKLFLAAGF 260
+ RG + + + ++ G
Sbjct: 164 GFPVERGLHAKRLKEVEEALRRLGL 188
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.76 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.76 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.75 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.75 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.75 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.74 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.74 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.72 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.72 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.72 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.72 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.71 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.7 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.69 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.69 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.68 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.68 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.67 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.67 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.66 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.66 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.65 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.64 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.64 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.64 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.62 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.61 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.56 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.55 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.54 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.54 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.52 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.51 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.51 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.51 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.47 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.46 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.46 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.46 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.45 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.45 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.43 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.43 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.42 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.42 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.41 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.41 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.39 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.39 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.38 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.38 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.38 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.37 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.37 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.36 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.36 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.36 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.36 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.35 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.35 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.34 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.33 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.32 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.31 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.29 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.29 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.28 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.28 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.28 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.27 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.27 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.26 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.26 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.26 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.25 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.25 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.24 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.24 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.23 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.23 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.22 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.21 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.2 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.19 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.17 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.17 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.17 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.17 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.15 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.15 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.14 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.14 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.14 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.13 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.13 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.11 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.1 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.1 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.1 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.1 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.1 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.09 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.09 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.09 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.08 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.07 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.07 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.06 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.05 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.05 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.04 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.04 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.04 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.03 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.02 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.02 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.02 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.0 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.99 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.99 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.99 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.99 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.99 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.99 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.98 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.97 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.97 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.96 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.96 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.95 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.91 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.89 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.89 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.88 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.86 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.84 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.79 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.76 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.76 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.75 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.74 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.68 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.66 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.64 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.64 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.63 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.63 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.62 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.61 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.6 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.56 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.56 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.56 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.54 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.51 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.5 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.49 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.49 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.46 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.45 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.42 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.42 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.39 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.38 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.36 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.36 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.35 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.34 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.3 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.26 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.25 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.24 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.2 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.18 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.11 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.09 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.03 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.01 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.95 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.9 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.89 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.88 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.75 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.71 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.65 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.63 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.62 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.59 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.51 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.47 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.35 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.34 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.27 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.1 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.08 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.97 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.95 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.83 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.57 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.3 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.14 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.1 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.87 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.85 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.55 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.73 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 92.69 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.92 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 90.66 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.88 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 87.32 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 86.85 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 86.56 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 86.23 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 85.93 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 85.45 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 84.65 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 84.12 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 83.85 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 83.72 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 83.48 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 83.43 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 83.13 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 82.79 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 82.28 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 82.11 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 81.98 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 81.96 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 81.7 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 81.64 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 81.37 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 81.22 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 81.07 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 80.57 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 80.52 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=343.69 Aligned_cols=269 Identities=19% Similarity=0.360 Sum_probs=240.2
Q ss_pred CccccccCceeecCC---CeEecChhcc-hhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhC---CC
Q 023625 1 MRILVHSGFFAQQKD---DEYFLTPASR-LLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG---KK 73 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~---~~y~~t~~s~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g---~~ 73 (279)
||+|+++|+|++..+ +.|+||+.++ +|.+++|.++++++.+.. +..+.+|.+|.+++++|+ ++|...+| .+
T Consensus 64 Lr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~ 141 (353)
T 4a6d_A 64 LDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEE 141 (353)
T ss_dssp HHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSS
T ss_pred HHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHH
Confidence 588999999986533 4799999997 888999999999888764 567899999999999998 67877776 36
Q ss_pred hhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcc
Q 023625 74 VWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ 153 (279)
Q Consensus 74 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 153 (279)
+|+++.++|+....|.++|...+....+.+++.++ +.+..+|||||||+|.++.++++++|+++++++|+|++++.++
T Consensus 142 ~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~ 219 (353)
T 4a6d_A 142 LFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAK 219 (353)
T ss_dssp HHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHH
Confidence 79999999999999999999988888888999887 7788899999999999999999999999999999999998887
Q ss_pred c-----CCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh
Q 023625 154 G-----TNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227 (279)
Q Consensus 154 ~-----~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~ 227 (279)
+ ..+||+++.+|+++ +.+++|+|+++++||+|+|+++.++|++++++|+ |||+++|+|.++++....+
T Consensus 220 ~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~---pgg~lli~e~~~~~~~~~~--- 293 (353)
T 4a6d_A 220 QHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCK---PGGGILVIESLLDEDRRGP--- 293 (353)
T ss_dssp HHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCC---TTCEEEEEECCCCTTSCCC---
T ss_pred HhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCC---CCCEEEEEEeeeCCCCCCC---
Confidence 4 35899999999998 5668999999999999999999999999999999 7999999999998765542
Q ss_pred hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 228 ~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
.....+|+.|++.++|++||.+||++||++|||+.++++++++..++|++||
T Consensus 294 ~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 294 LLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 2345789999999999999999999999999999999999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=329.68 Aligned_cols=273 Identities=28% Similarity=0.501 Sum_probs=241.5
Q ss_pred CccccccCceeecC--------CCeEecChhcchhhcC-CCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhC
Q 023625 1 MRILVHSGFFAQQK--------DDEYFLTPASRLLLKD-TPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG 71 (279)
Q Consensus 1 Lr~L~~~g~l~~~~--------~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g 71 (279)
||+|++.|+|+++. +++|+||+.|++|+++ ++.|+++++.+..++.++..|.+|.+++|+|+ ++|+..+|
T Consensus 82 Lr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g 160 (364)
T 3p9c_A 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYG 160 (364)
T ss_dssp HHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHS
T ss_pred HHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcC
Confidence 68999999999972 2589999999977765 47789999888777788899999999999988 89999999
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhh
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN 151 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 151 (279)
.++|+|+.++|+..+.|+++|...+......+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (364)
T 3p9c_A 161 MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239 (364)
T ss_dssp SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence 9999999999999999999999888777777888876 366789999999999999999999999999999999999999
Q ss_pred cccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 023625 152 LQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231 (279)
Q Consensus 152 a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~ 231 (279)
+++. +|++|+.+|+++++|..|+|++.++||+|+++++.++|++++++|+ |||+++|+|.+.++............
T Consensus 240 a~~~-~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~---pgG~l~i~e~~~~~~~~~~~~~~~~~ 315 (364)
T 3p9c_A 240 APQF-PGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALP---AHGKVVLVQCILPVNPEANPSSQGVF 315 (364)
T ss_dssp CCCC-TTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC---TTCEEEEEECCBCSSCCSSHHHHHHH
T ss_pred hhhc-CCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcC---CCCEEEEEEeccCCCCCcchhhhhHH
Confidence 9876 8999999999988776699999999999999999999999999999 79999999999887644322212234
Q ss_pred hcchhhhh-hcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 232 CFDILMVS-LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 232 ~~d~~~~~-~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
.+|+.|+. ..+|++|+.+||+++|+++||+.+++.+.++..++||++|
T Consensus 316 ~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 67888885 4689999999999999999999999999999999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=323.75 Aligned_cols=273 Identities=29% Similarity=0.562 Sum_probs=240.3
Q ss_pred CccccccCceeec----C----CCeEecChhcchhhc-CCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhC
Q 023625 1 MRILVHSGFFAQQ----K----DDEYFLTPASRLLLK-DTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG 71 (279)
Q Consensus 1 Lr~L~~~g~l~~~----~----~~~y~~t~~s~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g 71 (279)
||+|++.|+|+++ + +++|+||+.|+.|+. +++.|+++++.+..++.++..|.+|.+++++|. ++|+..+|
T Consensus 84 Lr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g 162 (368)
T 3reo_A 84 LRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYG 162 (368)
T ss_dssp HHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSS
T ss_pred HHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhC
Confidence 6899999999996 2 248999999996665 457889999888777788899999999999987 79999999
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhh
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN 151 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 151 (279)
.++|+|+.++|+..+.|+++|...+......+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 163 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 241 (368)
T 3reo_A 163 MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQD 241 (368)
T ss_dssp SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHh
Confidence 9999999999999999999999888777777888776 366789999999999999999999999999999999999999
Q ss_pred cccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 023625 152 LQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231 (279)
Q Consensus 152 a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~ 231 (279)
+++. ++++++.+|+++++|..|+|++.++||+|+++++.++|++++++|+ |||+++|+|.+.++............
T Consensus 242 a~~~-~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~~~~~~~~ 317 (368)
T 3reo_A 242 APAF-SGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVI 317 (368)
T ss_dssp CCCC-TTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSC---TTCEEEEEECCCCSSCCCCHHHHHHH
T ss_pred hhhc-CCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcC---CCCEEEEEEeccCCCCCCchhhhHHH
Confidence 9876 7999999999988776699999999999999999999999999999 79999999999877644322112334
Q ss_pred hcchhhhhh-cCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 232 CFDILMVSL-FRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 232 ~~d~~~~~~-~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
.+|+.|+.. .++++|+.+||+++|+++||+.+++.+..+..++||++|
T Consensus 318 ~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 678888865 489999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=316.06 Aligned_cols=268 Identities=24% Similarity=0.439 Sum_probs=238.5
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhc
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVAD 80 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~ 80 (279)
||+|++.|+|++ .+++|+||+.|+.|.++++.++.+++.++.++.++++|.+|++++++|. ++|+..+|.++|+++.+
T Consensus 76 Lr~l~~~g~l~~-~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~ 153 (348)
T 3lst_A 76 LRLLAVRDVVRE-SDGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDG 153 (348)
T ss_dssp HHHHHHTTSEEE-ETTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTT
T ss_pred HHHHHhCCCEEe-cCCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHh
Confidence 689999999999 5569999999998888888889999888776767899999999999887 67888899999999999
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcc----cCC
Q 023625 81 EPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ----GTN 156 (279)
Q Consensus 81 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~ 156 (279)
+|+....|.++|...+......+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++..++ ...
T Consensus 154 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~ 231 (348)
T 3lst_A 154 DAEVEALYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVA 231 (348)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGT
T ss_pred CHHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCC
Confidence 9999999999999988877788888887 6788999999999999999999999999999999988877332 135
Q ss_pred CCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh
Q 023625 157 DNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL 236 (279)
Q Consensus 157 ~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~ 236 (279)
+|++++.+|+++++|+||+|++.++||+|+++++.++|++++++|+ |||+++|.|.+.++.... .....+|+.
T Consensus 232 ~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk---pgG~l~i~e~~~~~~~~~----~~~~~~d~~ 304 (348)
T 3lst_A 232 GRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP---AHGRVLVIDAVVPEGNDA----HQSKEMDFM 304 (348)
T ss_dssp TSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCC---TTCEEEEEECCBCSSSSC----CHHHHHHHH
T ss_pred CCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCCc----chhhhcChh
Confidence 7899999999977779999999999999999999999999999999 799999999988776332 223467888
Q ss_pred hhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 237 MVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 237 ~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
|+...+++.|+.+||.++++++||+++++.+..+..++|+++|
T Consensus 305 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 305 MLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 8887889999999999999999999999999778899999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=315.33 Aligned_cols=274 Identities=48% Similarity=0.887 Sum_probs=241.1
Q ss_pred CccccccCceeec-----C-----CCeEecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCC-CChhHHh
Q 023625 1 MRILVHSGFFAQQ-----K-----DDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDD-PSLFETA 69 (279)
Q Consensus 1 Lr~L~~~g~l~~~-----~-----~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~ 69 (279)
||+|++.|+|+++ + +++|++|+.|++|+++++.++++++.+..++.+++.|.+|++++++|. .++|+..
T Consensus 69 Lr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~ 148 (358)
T 1zg3_A 69 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECA 148 (358)
T ss_dssp HHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHH
T ss_pred HHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHH
Confidence 6899999999988 3 369999999999999888889999988776777899999999999983 2789988
Q ss_pred hCCChhhhhhcCchHHH--HHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChh
Q 023625 70 HGKKVWDRVADEPKFKS--LFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPH 147 (279)
Q Consensus 70 ~g~~~~~~~~~~~~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 147 (279)
+|.++|+++.++|+... .|+.+|...+.... .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.
T Consensus 149 ~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 227 (358)
T 1zg3_A 149 TGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQ 227 (358)
T ss_dssp HSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHH
T ss_pred hCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHH
Confidence 99999999999999999 99999998777666 7888884346778999999999999999999999999999999999
Q ss_pred HHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCC---CcEEEEEeeecCCCCCCc
Q 023625 148 VVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDE---GGKVIIIDMAIENQSQDK 224 (279)
Q Consensus 148 ~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~p---gG~lli~e~~~~~~~~~~ 224 (279)
+++.+++. .+++++.+|+++++|.||+|++.++||+|+++++.++|++++++|+ | ||+++|+|.+.++....+
T Consensus 228 ~~~~a~~~-~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~---p~~~gG~l~i~e~~~~~~~~~~ 303 (358)
T 1zg3_A 228 VVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAIS---HKGKDGKVIIIDISIDETSDDR 303 (358)
T ss_dssp HHSSCCCC-SSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTG---GGGGGCEEEEEECEECTTCSCH
T ss_pred HHhhcccC-CCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCC---CCCCCcEEEEEEeccCCCCccc
Confidence 99988875 5799999999988778999999999999999999999999999999 8 999999999987654331
Q ss_pred hhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 225 ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 225 ~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
........+|+.|+...+|+.|+.+||.++|+++||+++++.+.++..++||++|
T Consensus 304 ~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 304 GLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred hhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 1112344678888877789999999999999999999999999888899999997
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=312.14 Aligned_cols=272 Identities=47% Similarity=0.904 Sum_probs=238.9
Q ss_pred CccccccCceeec--CCCeEecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhh-cCCCChhHHhhCCChhhh
Q 023625 1 MRILVHSGFFAQQ--KDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQ-NDDPSLFETAHGKKVWDR 77 (279)
Q Consensus 1 Lr~L~~~g~l~~~--~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~~ 77 (279)
||+|++.|+|+++ +++.|++|+.|++|+++++.++++++.+..++.++..|.+|+++++ +|. ++|+..+|.++|++
T Consensus 75 Lr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~ 153 (352)
T 1fp2_A 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDF 153 (352)
T ss_dssp HHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHH
T ss_pred HHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHH
Confidence 5889999999998 3569999999999999888889999988777778899999999999 666 88998899999999
Q ss_pred hhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCC
Q 023625 78 VADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTND 157 (279)
Q Consensus 78 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 157 (279)
+.++|+....|..+|........+. ++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++. .
T Consensus 154 ~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~ 231 (352)
T 1fp2_A 154 LDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-N 231 (352)
T ss_dssp HHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB-T
T ss_pred HHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccC-C
Confidence 9999999999999999887776666 7777434778899999999999999999999999999999999999999875 5
Q ss_pred CeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCC---CcEEEEEeeecCCCCCCchhhhhhhhcc
Q 023625 158 NLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDE---GGKVIIIDMAIENQSQDKESMETQLCFD 234 (279)
Q Consensus 158 ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~p---gG~lli~e~~~~~~~~~~~~~~~~~~~d 234 (279)
+++++.+|+++++|.||+|++.++||+|+++++.++|++++++|+ | ||+++|.|...++....+........+|
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~---p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d 308 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVT---NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD 308 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHS---GGGCCCEEEEEECEECTTTSCHHHHHHHHHHH
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCC---CCCCCcEEEEEEeecCCCCCccchhhhHhhcc
Confidence 799999999887778999999999999999999999999999999 8 9999999998876543211112234677
Q ss_pred hhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 235 ILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 235 ~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+.|+. .+++.|+.++|.++++++||+++++.+.++..++||++|
T Consensus 309 ~~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 309 VNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 77776 568889999999999999999999999888899999997
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=315.09 Aligned_cols=268 Identities=28% Similarity=0.506 Sum_probs=241.4
Q ss_pred CccccccCceeecCCCe-EecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhh
Q 023625 1 MRILVHSGFFAQQKDDE-YFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVA 79 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~-y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~ 79 (279)
||+|++.|+|+++++|+ |++|+.++.|.++++.++.+++.++.++..+..|.+|.++++++. ++|...+|.++|+|+.
T Consensus 92 Lr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~ 170 (369)
T 3gwz_A 92 LRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTH 170 (369)
T ss_dssp HHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHH
T ss_pred HHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHH
Confidence 68999999999987778 999999998888888889998888776667899999999999988 6788889999999999
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----
Q 023625 80 DEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----- 154 (279)
Q Consensus 80 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----- 154 (279)
++|+....|.++|..........+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++
T Consensus 171 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 248 (369)
T 3gwz_A 171 EDPKARELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGR 248 (369)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhc
Confidence 99999999999999888777788888886 67789999999999999999999999999999999988988874
Q ss_pred -CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 023625 155 -TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232 (279)
Q Consensus 155 -~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~ 232 (279)
..+|++++.+|+++++| +||+|++.++||+|+++++.++|++++++|+ |||+++|+|.+.++.... . ...
T Consensus 249 ~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~---pgG~l~i~e~~~~~~~~~----~-~~~ 320 (369)
T 3gwz_A 249 GLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMK---PDSRLLVIDNLIDERPAA----S-TLF 320 (369)
T ss_dssp TCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCC---TTCEEEEEEEBCCSSCCH----H-HHH
T ss_pred CcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcC---CCCEEEEEEeccCCCCCC----c-hhH
Confidence 35799999999998777 7999999999999999999999999999999 799999999998775432 2 447
Q ss_pred cchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe-cCCceeEEEEeC
Q 023625 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP-MLGVRSLIEAYP 279 (279)
Q Consensus 233 ~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 279 (279)
.|+.|+...++++|+.+||+++++++||+++++.+ ..+..++||++|
T Consensus 321 ~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 321 VDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 88888888899999999999999999999999999 678899999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=309.69 Aligned_cols=265 Identities=26% Similarity=0.429 Sum_probs=232.9
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCCCCChHHHHHHhcChhhH-HHHHHHhHhhhcCCCChhHHhhCCChhhhhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYT-TAFHCLGTWLQNDDPSLFETAHGKKVWDRVA 79 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~ 79 (279)
||+|++.|+|+++++++|.+|+.|+.|.++++.++.+++.+..+...+ ..|.+|+++++++. ++|+..+|.++|+++.
T Consensus 59 Lr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~ 137 (332)
T 3i53_A 59 LRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLG 137 (332)
T ss_dssp HHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHH
T ss_pred HHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHH
Confidence 589999999999877799999999988888888899888776544455 78999999999998 6788889999999999
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----
Q 023625 80 DEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----- 154 (279)
Q Consensus 80 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----- 154 (279)
++|+....|...|...+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 138 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 215 (332)
T 3i53_A 138 SDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDT 215 (332)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhc
Confidence 99999999999999877666666666665 56678999999999999999999999999999999999988874
Q ss_pred -CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 023625 155 -TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLC 232 (279)
Q Consensus 155 -~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~ 232 (279)
..+|++|+.+|+++++| +||+|+++++||+|+++++.++|++++++|+ |||+++|.|.+.++. . + ...
T Consensus 216 ~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~--~-~----~~~ 285 (332)
T 3i53_A 216 GLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAG---SGGVVLVIEAVAGDE--H-A----GTG 285 (332)
T ss_dssp TCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHT---TTCEEEEEECCCC------C----CHH
T ss_pred CcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcC---CCCEEEEEeecCCCC--C-c----cHH
Confidence 35799999999998777 7999999999999999999999999999999 799999999988765 2 1 236
Q ss_pred cchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 233 FDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 233 ~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+|+.|+...+++.|+.+||.++++++||+++++.+.++ .++||+|+
T Consensus 286 ~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 286 MDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 78888888889999999999999999999999999988 99999985
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=300.48 Aligned_cols=265 Identities=25% Similarity=0.398 Sum_probs=234.5
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhc
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVAD 80 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~ 80 (279)
||+|++.|+|++++++.|++|+.|+.|. ++|.++++++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.+
T Consensus 62 Lr~L~~~g~l~~~~~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~ 138 (334)
T 2ip2_A 62 MRLLVAFEIFQGDTRDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKR 138 (334)
T ss_dssp HHHHHHTTSEEEETTTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHH
T ss_pred HHHHHhCCceEecCCCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhh
Confidence 6899999999998877999999999888 888889999888776555 89999999999988 78988899999999999
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------
Q 023625 81 EPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------ 154 (279)
Q Consensus 81 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------ 154 (279)
+|+....|.+.| ..+....+.+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 139 ~~~~~~~f~~~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~ 214 (334)
T 2ip2_A 139 CPDAGRRFLLAM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLL 214 (334)
T ss_dssp CHHHHHHHHHHH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHH
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcC
Confidence 999999999999 877777777888776 566 8999999999999999999999999999999888888764
Q ss_pred CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc
Q 023625 155 TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233 (279)
Q Consensus 155 ~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 233 (279)
..++++++.+|+++++| +||+|++.+++|+|+++++.++|++++++|+ |||+++|.|...++.... .....+
T Consensus 215 ~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~----~~~~~~ 287 (334)
T 2ip2_A 215 AGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA---GDGRVVVIERTISASEPS----PMSVLW 287 (334)
T ss_dssp HTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC---TTCEEEEEECCBCSSSCC----HHHHHH
T ss_pred CCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCCc----chhHHh
Confidence 24789999999998766 5999999999999999999999999999999 799999999988765332 224467
Q ss_pred chhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 234 d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
|+.|+...+++.|+.++|.++++++||+++++.+.++..++|+++|
T Consensus 288 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 288 DVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 8888877789999999999999999999999999988899999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=303.87 Aligned_cols=274 Identities=27% Similarity=0.511 Sum_probs=225.0
Q ss_pred CccccccCceeec----C----CCeEecChhcchhhcCCC-CChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhC
Q 023625 1 MRILVHSGFFAQQ----K----DDEYFLTPASRLLLKDTP-LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG 71 (279)
Q Consensus 1 Lr~L~~~g~l~~~----~----~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g 71 (279)
||+|++.|+|+++ + +++|++|+.+++|+++++ .++++++.+..++.++..|.+|+++++++..++|+..+|
T Consensus 89 Lr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g 168 (372)
T 1fp1_D 89 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG 168 (372)
T ss_dssp HHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------
T ss_pred HHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhC
Confidence 6899999999987 2 249999999999998887 789999888777778899999999999982278888889
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhh
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN 151 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 151 (279)
.++|+++.++|+....|+.+|...+......+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~ 247 (372)
T 1fp1_D 169 VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247 (372)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHh
Confidence 9999999999999999999999887777777888775 356788999999999999999999999999999999999999
Q ss_pred cccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 023625 152 LQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231 (279)
Q Consensus 152 a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~ 231 (279)
+++. ++++++.+|+++++|.||+|++.++||+|+++++.++|++++++|+ |||+++|.|...++....+.......
T Consensus 248 a~~~-~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~~~~~~~~ 323 (372)
T 1fp1_D 248 APPL-SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS---PNGKVIIVEFILPEEPNTSEESKLVS 323 (372)
T ss_dssp CCCC-TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEEECSSCCSSHHHHHHH
T ss_pred hhhc-CCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCccchHHHHHH
Confidence 9876 6899999999987778999999999999999999999999999999 79999999998877543311001234
Q ss_pred hcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe-cCCceeEEEEeC
Q 023625 232 CFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP-MLGVRSLIEAYP 279 (279)
Q Consensus 232 ~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 279 (279)
.+|+.|+...+++.|+.++|+++++++||+++++.+ .++..++||++|
T Consensus 324 ~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 324 TLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 677777766678999999999999999999999988 455249999997
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=286.39 Aligned_cols=269 Identities=26% Similarity=0.508 Sum_probs=231.7
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCCCCChHHHHHHhcChh-hHHHHHHHhHhhhcCCCChhHHhhCCChhhhhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPL-YTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVA 79 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~ 79 (279)
||+|++.|+|++..+|+|++|+.+++|+++++.++++++.+..++. .+..|.+|.+.+++|. ++|+..+|.++|+++.
T Consensus 73 L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~ 151 (360)
T 1tw3_A 73 IRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLA 151 (360)
T ss_dssp HHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHH
T ss_pred HHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHH
Confidence 6889999999997777999999999999999888998877665433 5678999999999987 5678888999999999
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----
Q 023625 80 DEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----- 154 (279)
Q Consensus 80 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----- 154 (279)
++|+....|...|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++
T Consensus 152 ~~p~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~ 229 (360)
T 1tw3_A 152 GRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDE 229 (360)
T ss_dssp TCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHT
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhc
Confidence 99999999999999877777777888776 66788999999999999999999999999999999888887764
Q ss_pred -CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee-cCCCCCCchhhhhhh
Q 023625 155 -TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQL 231 (279)
Q Consensus 155 -~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~-~~~~~~~~~~~~~~~ 231 (279)
..++++++.+|+++++| +||+|++.+++|+|+++++.++|++++++|+ |||++++.|.. .++.... ....
T Consensus 230 ~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~----~~~~ 302 (360)
T 1tw3_A 230 GLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDLHENSFN----EQFT 302 (360)
T ss_dssp TCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE---EEEEEEEEECCBCGGGCCS----HHHH
T ss_pred CCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcC---CCcEEEEEEEeccCCCCCc----chhh
Confidence 34589999999998766 4999999999999999999999999999999 79999999988 6544322 1233
Q ss_pred hcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCc-----eeEEEEeC
Q 023625 232 CFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGV-----RSLIEAYP 279 (279)
Q Consensus 232 ~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~-----~~~i~~~~ 279 (279)
.+++.|+...+++.++.++|.++++++||+++++.+.++. .++|+++|
T Consensus 303 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 303 ELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred hccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 5677777767899999999999999999999999888765 78999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=287.06 Aligned_cols=269 Identities=22% Similarity=0.393 Sum_probs=228.7
Q ss_pred CccccccCceeecCCC--eEecChhcchhhcCCCCChHHHHHHhcChhhH-HHHHHHhHhhhcCCCChhHHhhCCChhhh
Q 023625 1 MRILVHSGFFAQQKDD--EYFLTPASRLLLKDTPLKAAPFVDLVADPLYT-TAFHCLGTWLQNDDPSLFETAHGKKVWDR 77 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~--~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~ 77 (279)
||+|++.|+|++..+| .|++|+.+++|.++++.++++++.+..++..+ ..|.+|.+.+++|. ++|+..+|.++|++
T Consensus 70 Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~ 148 (374)
T 1qzz_A 70 VRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWED 148 (374)
T ss_dssp HHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHH
T ss_pred HHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHH
Confidence 6899999999997777 89999999999999888899888776544556 78999999999987 67888889999999
Q ss_pred hhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc---
Q 023625 78 VADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--- 154 (279)
Q Consensus 78 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--- 154 (279)
+.++|+....|...|........+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+++
T Consensus 149 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~ 226 (374)
T 1qzz_A 149 LSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFA 226 (374)
T ss_dssp HHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHH
T ss_pred HhhChHHHHHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHH
Confidence 9999999999999999877766677888776 66788999999999999999999999999999999888888764
Q ss_pred ---CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee--ecCCCCCCchhhh
Q 023625 155 ---TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM--AIENQSQDKESME 228 (279)
Q Consensus 155 ---~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~--~~~~~~~~~~~~~ 228 (279)
..++++++.+|+++++| +||+|++.+++|+|+++++.++|++++++|+ |||+++|.|. ..++.... .
T Consensus 227 ~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~~----~ 299 (374)
T 1qzz_A 227 DAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADR----F 299 (374)
T ss_dssp HTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEECCH-------H----H
T ss_pred hcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcC---CCcEEEEEechhhcCCCCCc----c
Confidence 33589999999988766 4999999999999999999999999999999 7999999998 76554221 2
Q ss_pred hhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCce-----eEEEEeC
Q 023625 229 TQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVR-----SLIEAYP 279 (279)
Q Consensus 229 ~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~-----~~i~~~~ 279 (279)
....+++.|+...+++.++.++|.++++++||+++++.+.++.. ++|+++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 300 FSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred hhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 23466777777778999999999999999999999999888776 8999874
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=280.65 Aligned_cols=266 Identities=20% Similarity=0.275 Sum_probs=210.4
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhC--CChhhhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG--KKVWDRV 78 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~ 78 (279)
||+|++.|+|++++ ++|+||+.|++|+++++.+ .++.+. .+..+++|.+|++++|+|+ .++...+| .++|+++
T Consensus 71 Lr~l~~~g~l~~~~-~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~ 145 (363)
T 3dp7_A 71 LEASLTIGTILLEE-DRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGL 145 (363)
T ss_dssp HHHHHHHTSEEEET-TEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHG
T ss_pred HHHHhhCCCeEecC-CEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHH
Confidence 68999999999975 5999999999998877632 233333 3567899999999999998 56667777 6899999
Q ss_pred hcCchHHHH----HHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc
Q 023625 79 ADEPKFKSL----FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG 154 (279)
Q Consensus 79 ~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 154 (279)
.++|+.... |...|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 220 (363)
T 3dp7_A 146 SQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRK 220 (363)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHH
Confidence 999987763 6666655321 23444433 25678999999999999999999999999999999999988874
Q ss_pred ------CCCCeEEeeCCCCCC---CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc
Q 023625 155 ------TNDNLDFLGGNMFEA---IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK 224 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~~---~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~ 224 (279)
..+|++++.+|++++ .| +||+|++.++||+|+++++.++|++++++|+ |||+++|+|.+.++.....
T Consensus 221 ~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~ 297 (363)
T 3dp7_A 221 QTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG---KDSKVYIMETLWDRQRYET 297 (363)
T ss_dssp HHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCC---TTCEEEEEECCTTSCSSHH
T ss_pred HHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcC---CCcEEEEEeeccCCccccc
Confidence 236899999999984 56 6999999999999999999999999999999 7999999999887654331
Q ss_pred hhh-hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCC-ceeEEEEeC
Q 023625 225 ESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG-VRSLIEAYP 279 (279)
Q Consensus 225 ~~~-~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 279 (279)
... ......++.++...+++.|+.+||+++|+++||+++++.+..+ ..++|+.+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 100 0111223334444568899999999999999999999987654 489999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=266.90 Aligned_cols=264 Identities=20% Similarity=0.299 Sum_probs=223.2
Q ss_pred CccccccCceeecCCCeEecChhc-chhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPAS-RLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVA 79 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~ 79 (279)
||+|++.|+|++.+ ++|++|+.+ ++|.++++.|+++++.+..++..++.|.+|+++++++. ++|+ + |+++.
T Consensus 60 L~~L~~~g~l~~~~-~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~ 131 (335)
T 2r3s_A 60 CDYLVIIGFMTKQA-EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLS 131 (335)
T ss_dssp HHHHHHTTSEEEET-TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGS
T ss_pred HHHHHhcCCeEecC-CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-ccccc
Confidence 68999999999865 599999999 69999888889999888766567889999999999987 3332 3 88888
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----
Q 023625 80 DEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----- 154 (279)
Q Consensus 80 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----- 154 (279)
++++....|...|..........+++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 211 (335)
T 2r3s_A 132 PEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQ 211 (335)
T ss_dssp TTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhc
Confidence 999999999999988777777778887762126788999999999999999999999999999999988887764
Q ss_pred -CCCCeEEeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 023625 155 -TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231 (279)
Q Consensus 155 -~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~ 231 (279)
..++++++.+|+++ +.+ +||+|++.+++|+|+++++.++|++++++|+ |||+++++|...++....+ ....
T Consensus 212 ~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~---~~~~ 285 (335)
T 2r3s_A 212 GVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA---VEGKVIVFDFIPNSDRITP---PDAA 285 (335)
T ss_dssp TCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEECCCCTTSSCS---HHHH
T ss_pred CCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCC---CCcEEEEEeecCCCCcCCc---hHHH
Confidence 24689999999998 565 4999999999999999999999999999999 7999999998877643331 2234
Q ss_pred hcchhhhhhc-CCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 232 CFDILMVSLF-RGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 232 ~~d~~~~~~~-~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
.+++.|+... +++.++.++|.++++++||+++++.+.++..++|+++
T Consensus 286 ~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 286 AFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 6777777766 7899999999999999999999999988777766654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=268.42 Aligned_cols=259 Identities=19% Similarity=0.326 Sum_probs=213.1
Q ss_pred CccccccCceeecCCCeEecChhcc-hhhcCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASR-LLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVA 79 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~ 79 (279)
||+|++.|+|+++++ +|.+|+.++ +|.++++.+++.++.+. ...+..|.+|++++++|.|..|+.. .++.
T Consensus 77 Lr~L~~~gll~~~~~-~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~ 147 (352)
T 3mcz_A 77 LHALAALGLLTKEGD-AFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFA 147 (352)
T ss_dssp HHHHHHTTSEEEETT-EEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTT
T ss_pred HHHHHHCCCeEecCC-eeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccc
Confidence 689999999999885 999999997 78888898999887765 3456889999999999976554321 2345
Q ss_pred cCchHHHHHHHHhhhcchhhHHHHHHhchhhhCC-CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----
Q 023625 80 DEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG-LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG---- 154 (279)
Q Consensus 80 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 154 (279)
++|+....|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|++.+++.+++
T Consensus 148 ~~~~~~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 224 (352)
T 3mcz_A 148 HDTRARDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHA 224 (352)
T ss_dssp TCHHHHHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHh
Confidence 7888889999999873322 236778777 555 88999999999999999999999999999999888887763
Q ss_pred --CCCCeEEeeCCCCCC---CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh
Q 023625 155 --TNDNLDFLGGNMFEA---IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228 (279)
Q Consensus 155 --~~~ri~~~~~d~~~~---~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~ 228 (279)
..+|++++.+|++++ .+ +||+|++.+++|+|+++++.++|++++++|+ |||+++|.|.+.++....+ .
T Consensus 225 ~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~~~~~---~ 298 (352)
T 3mcz_A 225 HDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK---PGGALLILTMTMNDDRVTP---A 298 (352)
T ss_dssp TTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE---EEEEEEEEEECCCTTSSSS---H
T ss_pred cCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcC---CCCEEEEEEeccCCCCCCC---c
Confidence 246899999999984 45 4999999999999999999999999999999 7999999999988765432 2
Q ss_pred hhhhcchhhhhhc-CCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 229 TQLCFDILMVSLF-RGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 229 ~~~~~d~~~~~~~-~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
....+++.|+... +++.|+.++|+++++++||++++.. .+..+++++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 3457788887755 6899999999999999999998843 34567777664
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=264.54 Aligned_cols=254 Identities=19% Similarity=0.359 Sum_probs=214.6
Q ss_pred CccccccCceeecCCCeEecChhc-chhhcCCC---CChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPAS-RLLLKDTP---LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWD 76 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s-~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~ 76 (279)
||+|++.|+|+++++ +|++|+.+ .+|.++++ .++++++.+.. ...++.|.+|++++++|.| |+
T Consensus 85 Lr~L~~~gll~~~~~-~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~l~~g~~-----------~~ 151 (359)
T 1x19_A 85 LETLRQMRVINLEDG-KWSLTEFADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQKN-----------FK 151 (359)
T ss_dssp HHHHHHTTSEEEETT-EEEECHHHHHHSSSSCSBTTBCCHHHHHHHH-HHHHHTGGGHHHHHTTSCC-----------CC
T ss_pred HHHHHhCCCeEeeCC-eEecCHHHHHHhcCCCCCccccHHHHHHHHH-HHHHHHHHHHHHHHhcCCC-----------Cc
Confidence 689999999999875 99999964 58888888 88998887763 5678899999999998863 67
Q ss_pred hhhcCch---HHHHHHHHhhhcch-hhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhc
Q 023625 77 RVADEPK---FKSLFYDLMITDSE-LIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNL 152 (279)
Q Consensus 77 ~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 152 (279)
++.++|+ ....|...|..... .....+++.++ +.+..+|||||||+|.++..+++++|+++++++|++.+++.+
T Consensus 152 ~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 229 (359)
T 1x19_A 152 GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 229 (359)
T ss_dssp CSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHH
T ss_pred ccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHH
Confidence 7788888 88999999998877 77777888876 677889999999999999999999999999999998888887
Q ss_pred cc------CCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch
Q 023625 153 QG------TNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 225 (279)
Q Consensus 153 ~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~ 225 (279)
++ ..+|++++.+|+++ +.+++|+|++.+++|+|+++++.++|++++++|+ |||+++|+|...++. .. +
T Consensus 230 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~---pgG~l~i~e~~~~~~-~~-~ 304 (359)
T 1x19_A 230 NENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVIDDP-EN-P 304 (359)
T ss_dssp HHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCC---TTCEEEEEEECCCCT-TS-C
T ss_pred HHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcC---CCCEEEEEecccCCC-CC-c
Confidence 73 34689999999998 5666799999999999999999999999999999 799999999988765 22 1
Q ss_pred hhhhhhhcchhhhhh-cCCee----CCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 226 SMETQLCFDILMVSL-FRGKE----RSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 226 ~~~~~~~~d~~~~~~-~~~~~----r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
.....+ .|+.. .++++ ++.++|.++++++||+++++.+.+ ..++|+++|
T Consensus 305 --~~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 305 --NFDYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp --CHHHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred --hHHHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 111222 34432 34667 899999999999999999999888 778898875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=161.70 Aligned_cols=164 Identities=18% Similarity=0.232 Sum_probs=123.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~ 180 (279)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ...+++++.+|+.+ +.+++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678999999999999999999985 6789999999 999998874 24689999999988 777899999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh---h----------c-CCeeC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS---L----------F-RGKER 246 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---~----------~-~~~~r 246 (279)
+||++++++..++|++++++|+ |||++++.|............ ....+.+..... . . --...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lk---pGG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLN---PGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcC---CCcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 9999999988899999999999 799999999876654211100 000011110000 0 0 01235
Q ss_pred CHHHHHHHHHHCCCceeEEEe-cCCceeEEEEe
Q 023625 247 SVDDWKKLFLAAGFSHYKITP-MLGVRSLIEAY 278 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 278 (279)
+.+++.++|++|||+.++++- .-.+.++|-.+
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 889999999999999988753 34555665443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-20 Score=149.45 Aligned_cols=163 Identities=13% Similarity=0.217 Sum_probs=123.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4568999999999999999999999999999999 8888887742 2389999999988 444 69999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch--------h-h---h-hhcCCeeCCHHHHH
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI--------L-M---V-SLFRGKERSVDDWK 252 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--------~-~---~-~~~~~~~r~~~e~~ 252 (279)
++++..++|++++++|+ |||++++.+...+........ ....+... . . . .......++.+++.
T Consensus 123 ~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILK---ESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp CHHHHHHHHHHHHHHEE---EEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CHHHHHHHHHHHHHhcC---CCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 99888899999999999 799999999876543211000 00000000 0 0 0 00123456889999
Q ss_pred HHHHHCCCceeEEEecCCceeEEEEe
Q 023625 253 KLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
++|++|||+.+++.......+++..+
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCceeeeeeecceeEEEEE
Confidence 99999999999998776655554443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=141.21 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=120.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-CCeEEeeCCCCC-CCC-ccceeee
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-DNLDFLGGNMFE-AIP-QANAVLL 178 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~~-~~~-~~D~v~~ 178 (279)
+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++.. .+++++.+|+.+ +.+ .||+|++
T Consensus 37 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 37 ILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 444443 456789999999999999999997 678999999 88888887632 489999999987 444 6999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--hhhcCCeeCCHHHHHHHHH
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--VSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~r~~~e~~~ll~ 256 (279)
..++|++++.+...+|++++++|+ |||.+++.+....................... .........+.++|.++++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLN---KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSC---TTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcC---CCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence 999999999988789999999999 79999999866543211100000000000000 0000112348899999999
Q ss_pred HCCCceeEEEecCCceeEEEEe
Q 023625 257 AAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 257 ~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
++||+++.+. ..+...+++++
T Consensus 190 ~aGf~v~~~~-~~~~~w~~~~~ 210 (220)
T 3hnr_A 190 NNGFHVTFTR-LNHFVWVMEAT 210 (220)
T ss_dssp HTTEEEEEEE-CSSSEEEEEEE
T ss_pred HCCCEEEEee-ccceEEEEeeh
Confidence 9999866554 34666666654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=138.71 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=111.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-CCeEEeeCCCCCCCC--ccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-DNLDFLGGNMFEAIP--QANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~ 186 (279)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++.. .+++++.+|+.+..+ .||+|++..++|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 456679999999999999999998 669999999 88998888643 689999999987433 599999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC------CeeCCHHHHHHHHHHCCC
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR------GKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~r~~~e~~~ll~~aGf 260 (279)
+++...+|++++++|+ |||.+++.+...+...... .........+......+ ....+.++|.++++++||
T Consensus 122 ~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVA---PGGVVEFVDVTDHERRLEQ-QDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp HHHHHHHHHHHHHHEE---EEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcC---CCeEEEEEeCCCCccccch-hhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 9888999999999999 7999999987653221110 00000000000000011 123499999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
++......+
T Consensus 198 ~v~~~~~~~ 206 (218)
T 3ou2_A 198 SCSVDEVHP 206 (218)
T ss_dssp EEEEEEEET
T ss_pred EEEeeeccc
Confidence 955444434
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=146.89 Aligned_cols=162 Identities=12% Similarity=0.120 Sum_probs=117.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 4478999999999999999999877 8999999 888888774 23789999999987 544 599999999988
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--h-hhhhhhhcchhhh--------hhc--C-------C
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--E-SMETQLCFDILMV--------SLF--R-------G 243 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~-~~~~~~~~d~~~~--------~~~--~-------~ 243 (279)
.+..++..++|++++++|+ |||++++.+...+...... . ......+....+. ... + .
T Consensus 115 ~~~~~~~~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLK---PSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRF 191 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEE---EEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEE
T ss_pred hCCHHHHHHHHHHHHHHcC---CCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeeh
Confidence 7788888899999999999 7999999876532210000 0 0000000000000 000 0 1
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
..++ .++.++|+++||+.+++.++.....+|+++|
T Consensus 192 ~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 192 NVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 1122 4899999999999999999988888999887
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=144.05 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=117.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceeeehh-hhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVLLKW-ILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~~~~-vlh~~~ 186 (279)
.++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999885 47999999 89999888754689999999988 444 599999998 999986
Q ss_pred h-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh--------------------hhhhhcchhhhhhcC---
Q 023625 187 D-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM--------------------ETQLCFDILMVSLFR--- 242 (279)
Q Consensus 187 ~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~--------------------~~~~~~d~~~~~~~~--- 242 (279)
+ ++..++|++++++|+ |||.+++.+...++........ ......++.+.....
T Consensus 126 ~~~~~~~~l~~~~~~L~---pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVL---PDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEE---EEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcC---CCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 577899999999999 7999888654333321110000 000011111111111
Q ss_pred ---------CeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 243 ---------GKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 243 ---------~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
.+.++.+||.++|+++||+++++....+...+++++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 223589999999999999999987776666666555
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=137.82 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=123.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~- 171 (279)
..+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++. ..++++..+|+.+ +.+
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 34555554 5677899999999999999999997 7889999999 8888887641 2589999999987 544
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHH
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDD 250 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e 250 (279)
.||+|++..++|++++. ..+|+++.++|+ |||.+++.+..........+ ....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAK---PFAYLAIIDWKKEERDKGPP----------------PEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEE---EEEEEEEEEECSSCCSSSCC----------------GGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhC---CCeEEEEEEecccccccCCc----------------hhcccCHHH
Confidence 49999999999999764 688999999999 79999998876554322210 012248899
Q ss_pred HHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 251 WKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
|.++++++||+++++...+.....+.+++
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999988876665555553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=142.29 Aligned_cols=156 Identities=13% Similarity=0.233 Sum_probs=121.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC---CCeEEeeCCCCC-CCC--cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN---DNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---~ri~~~~~d~~~-~~~--~~ 173 (279)
..+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++.. ++++++.+|+.+ +.+ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 33444443 5667899999999999999999987 679999999 88888887532 689999999987 554 59
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|+|++..++|++++++...+|++++++|+ |||++++.+...+...... ..+.. .....+....+.+++.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLK---PTGTLLITDYCATEKENWD-----DEFKE--YVKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEEESCGGGCC-----HHHHH--HHHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcC---CCCEEEEEEeccCCcccch-----HHHHH--HHhcCCCCCCCHHHHHH
Confidence 99999999999988888999999999999 7999999998766521110 00100 11112334568999999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
+++++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=140.43 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=119.6
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~- 171 (279)
..+++.++ ..+..+|||||||+|.++..+++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 34555554 5677899999999999999999987 679999999 888887763 34689999999987 554
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHH
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDD 250 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e 250 (279)
.||+|++..++|++++. ..+|++++++|+ |||++++.+......... . .....+............+.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~---pgG~l~i~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLR---PGGTVAIADFVLLAPVEG-A---KKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEE---EEEEEEEEEEEESSCCCH-H---HHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcC---CCeEEEEEEeeccCCCCh-h---HHHHHHHHHhhcCccCCCCHHH
Confidence 59999999999999775 588999999999 799999999876543221 0 0111111111122456679999
Q ss_pred HHHHHHHCCCceeEEEecC
Q 023625 251 WKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~ 269 (279)
+.++++++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999998887653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-19 Score=142.33 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=114.2
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
.+|||||||+|.++..++++ |..+++++|+ +.+++.++. ..++++++.+|+.+ +.+ .||+|++..++|+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 39999999999999999998 8889999999 888888774 24689999999988 554 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh--hhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME--TQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
+++ ...+|++++++|+ |||.+++.+...+..... .... .................++.++|.++|+++||+.
T Consensus 124 ~~~--~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 197 (219)
T 3dlc_A 124 WED--VATAFREIYRILK---SGGKTYIGGGFGNKELRD-SISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197 (219)
T ss_dssp CSC--HHHHHHHHHHHEE---EEEEEEEEECCSSHHHHH-HHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred ccC--HHHHHHHHHHhCC---CCCEEEEEeccCcHHHHH-HHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence 965 4589999999999 799999987543321100 0000 0000000000001133447899999999999999
Q ss_pred eEEEecCCceeEEEEe
Q 023625 263 YKITPMLGVRSLIEAY 278 (279)
Q Consensus 263 ~~~~~~~~~~~~i~~~ 278 (279)
+++........++..+
T Consensus 198 v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 198 YEIILGDEGFWIIISK 213 (219)
T ss_dssp EEEEEETTEEEEEEBC
T ss_pred EEEEecCCceEEEEec
Confidence 9998777666655443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=138.47 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=117.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceee-ehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVL-LKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~-~~~vlh~~~~ 187 (279)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|+ +..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999976 8999999 89999888654789999999987 444 599999 4558888754
Q ss_pred -hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh--------------------hhhhcchhhhhhc-CC--
Q 023625 188 -EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME--------------------TQLCFDILMVSLF-RG-- 243 (279)
Q Consensus 188 -~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~-~~-- 243 (279)
++..++|++++++|+ |||.+++.+...++......... ......+.++... ++
T Consensus 117 ~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLE---PGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEE---EEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcC---CCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 678899999999999 79999887655443321100000 0000111111111 11
Q ss_pred ---------eeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 244 ---------KERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 244 ---------~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+.++.++|+++|+++||++..+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 345899999999999998777766556667777764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=141.76 Aligned_cols=149 Identities=17% Similarity=0.264 Sum_probs=116.5
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~D 174 (279)
.+++.++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 3444443 4567899999999999999999886 557999999 8888888752 1579999999977 444 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..++|++++++..++|++++++|+ |||.+++.+........ ..+. ......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALT---PNGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcC---CCeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHHHH
Confidence 9999999999998888999999999999 79999998865433210 1110 112345699999999
Q ss_pred HHHCCCceeEEEecC
Q 023625 255 FLAAGFSHYKITPML 269 (279)
Q Consensus 255 l~~aGf~~~~~~~~~ 269 (279)
|+++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999887654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=138.16 Aligned_cols=141 Identities=16% Similarity=0.296 Sum_probs=110.8
Q ss_pred CCCEEEEecCCc---cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCC------------C--C
Q 023625 113 GLKSLVDVAGGT---GIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEA------------I--P 171 (279)
Q Consensus 113 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~------------~--~ 171 (279)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 999998875 236899999999752 1 3
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.+|+|++..+||++++++...+|++++++|+ |||.+++.+...+. .. . . ....+...........|+.+|+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~---pGG~l~i~~~~~~~--~~-~--~-~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALA---PGSYLFMTSLVDTG--LP-A--Q-QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSC---TTCEEEEEEEBCSS--CH-H--H-HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCC---CCcEEEEEEecCcc--hH-H--H-HHHHHHHHhcCCCCccCCHHHH
Confidence 5899999999999999888999999999999 79999999876532 11 1 1 1122222222224567899999
Q ss_pred HHHHHHCCCceeE
Q 023625 252 KKLFLAAGFSHYK 264 (279)
Q Consensus 252 ~~ll~~aGf~~~~ 264 (279)
.++| +||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998765
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=139.62 Aligned_cols=145 Identities=16% Similarity=0.220 Sum_probs=113.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 4677899999999999999999986 469999999 888887764 34689999999988 654 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|++++ ...+|++++++|+ |||++++.+.......... ......... ......+.++|.++++++||
T Consensus 159 ~l~~~~~--~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPD--KLKVFQECARVLK---PRGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSC--HHHHHHHHHHHEE---EEEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCC--HHHHHHHHHHHcC---CCeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 9999988 4689999999999 7999999998766543221 001111111 11234589999999999999
Q ss_pred ceeEEEec
Q 023625 261 SHYKITPM 268 (279)
Q Consensus 261 ~~~~~~~~ 268 (279)
+++++...
T Consensus 227 ~~~~~~~~ 234 (297)
T 2o57_A 227 VTLRTFSR 234 (297)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99988765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=139.67 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=117.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~- 171 (279)
..+++.++ .+.+..+|||||||+|.++..+++++ ..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 44555443 24567899999999999999999986 578999999 888888774 34589999999987 554
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHH
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDD 250 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e 250 (279)
.||+|++..++|+++ ..++|+++.++|+ |||++++.+........... ......+-.. ....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLK---VGGRYVTITGCWNPRYGQPS--KWVSQINAHF----ECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEE---EEEEEEEEEEEECTTTCSCC--HHHHHHHHHH----TCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcC---CCcEEEEEEccccccccchh--HHHHHHHhhh----cCCCCCHHH
Confidence 599999999999984 5789999999999 79999999987765432210 0000111111 123568999
Q ss_pred HHHHHHHCCCceeEEEecC
Q 023625 251 WKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~ 269 (279)
|.++++++||+++++...+
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999887653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=134.15 Aligned_cols=141 Identities=16% Similarity=0.274 Sum_probs=110.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh~ 184 (279)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +.+ .||+|++..++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 456789999999999999999998 557999999 8888888754 8899999865 444 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+++++...+|++++++|+ |||.+++....... . . ...+.. .........+.+++.++++++||++++
T Consensus 114 ~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~---~--~----~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~ 180 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMK---YSSYIVIESPNPTS---L--Y----SLINFY-IDPTHKKPVHPETLKFILEYLGFRDVK 180 (240)
T ss_dssp SCGGGHHHHHHHHHHHBC---TTCCEEEEEECTTS---H--H----HHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHHHHHcC---CCcEEEEEeCCcch---h--H----HHHHHh-cCccccccCCHHHHHHHHHHCCCeEEE
Confidence 999888999999999999 79999987653211 0 0 011111 111123456889999999999999988
Q ss_pred EEecC
Q 023625 265 ITPML 269 (279)
Q Consensus 265 ~~~~~ 269 (279)
+....
T Consensus 181 ~~~~~ 185 (240)
T 3dli_A 181 IEFFE 185 (240)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=140.76 Aligned_cols=153 Identities=16% Similarity=0.362 Sum_probs=115.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP-- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~-- 171 (279)
..+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .++++++.+|+.+ +.+
T Consensus 27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 44555554 45778999999999999999999875 8999999 8888887641 2579999999987 655
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh-hh-hcCCeeCCHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM-VS-LFRGKERSVD 249 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~r~~~ 249 (279)
.||+|++..++|++++. ..+|++++++|+ |||++++.+...+... . ...+..... +. ......++.+
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk---pgG~l~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLK---KGGQLLLVDNSAPEND----A--FDVFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEEEBCSSH----H--HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcC---CCCEEEEEEcCCCCCH----H--HHHHHHHHHHhcCccccCCCCHH
Confidence 59999999999999875 488999999999 7999999987765431 1 011111111 11 1123556899
Q ss_pred HHHHHHHHCCCceeEEEec
Q 023625 250 DWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~~~ 268 (279)
+|.++|+++||+++++...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998877654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.3e-18 Score=134.87 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=113.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEE 189 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~ 189 (279)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++..++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999998 568999999 88999888755789999999987 543 599999999999999888
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 190 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 190 ~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
..++|++++++|+ |||.+++.....+.... +.. .......++.++|.++++++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~---pgG~l~i~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVE---DGGGLLMSFFSGPSLEP---------MYH----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEE---EEEEEEEEEECCSSCEE---------ECC----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcC---CCcEEEEEEccCCchhh---------hhc----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 8999999999999 79999988754433110 000 0112345689999999999999999998765
Q ss_pred C
Q 023625 270 G 270 (279)
Q Consensus 270 ~ 270 (279)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=136.38 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=114.9
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-c
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-Q 172 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~ 172 (279)
.+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.. .
T Consensus 27 ~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 27 TLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 3444443 5677899999999999999999987 678999999 888888763 23689999999987 433 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
||+|++..++|++++. .++|++++++|+ |||++++.+............ ...+. ........+.++|.
T Consensus 104 fD~V~~~~~~~~~~~~--~~~l~~~~r~Lk---pgG~l~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~ 171 (256)
T 1nkv_A 104 CDVAACVGATWIAGGF--AGAEELLAQSLK---PGGIMLIGEPYWRQLPATEEI--AQACG-----VSSTSDFLTLPGLV 171 (256)
T ss_dssp EEEEEEESCGGGTSSS--HHHHHHHTTSEE---EEEEEEEEEEEETTCCSSHHH--HHTTT-----CSCGGGSCCHHHHH
T ss_pred CCEEEECCChHhcCCH--HHHHHHHHHHcC---CCeEEEEecCcccCCCChHHH--HHHHh-----cccccccCCHHHHH
Confidence 9999999999998764 688999999999 799999999876544322100 00000 00112445899999
Q ss_pred HHHHHCCCceeEEEec
Q 023625 253 KLFLAAGFSHYKITPM 268 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~ 268 (279)
++++++||+++++...
T Consensus 172 ~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 172 GAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHTTTBCCCEEEEC
T ss_pred HHHHHCCCeeEEEEeC
Confidence 9999999998877543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=138.40 Aligned_cols=161 Identities=10% Similarity=0.131 Sum_probs=118.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D 174 (279)
.+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ ..+++++..+|+.+-...||
T Consensus 55 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 55 LALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 3444444 56678999999999999999997765 49999999 888887764 23689999999965225699
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCC----Cchhh-hhhhhcchhhh-hhcCCeeCCH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ----DKESM-ETQLCFDILMV-SLFRGKERSV 248 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~----~~~~~-~~~~~~d~~~~-~~~~~~~r~~ 248 (279)
+|++..++|++++++...+|++++++|+ |||++++.+...+.... ..+.. ......+.... ...++...+.
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLP---ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSC---TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcC---CCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 9999999999987778899999999999 79999999887654211 00000 00001111111 1124566699
Q ss_pred HHHHHHHHHCCCceeEEEec
Q 023625 249 DDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~~~~ 268 (279)
+++.++++++||+++++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 99999999999999988765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=142.33 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=117.2
Q ss_pred hCCCCEEEEecCCccHHHHHHH-HHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIA-TAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999996 6788999999999 888888774 23569999999987 444 599999999
Q ss_pred hhccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hh--hh-h---hhcchhhhhhcC---CeeCCHH
Q 023625 181 ILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SM--ET-Q---LCFDILMVSLFR---GKERSVD 249 (279)
Q Consensus 181 vlh~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~--~~-~---~~~d~~~~~~~~---~~~r~~~ 249 (279)
++|++++. ...++|++++++|+ |||++++.+...+....... +. .. . ......+..... ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALK---PGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEE---EEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcC---CCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 99998654 44579999999999 79999998765543221100 00 00 0 000000111111 1336999
Q ss_pred HHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 250 DWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
++.++++++||+++++.... +....+.++
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~ 302 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIAR 302 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEe
Confidence 99999999999999988654 333334444
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=135.03 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=112.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 456789999999999999999999986 9999999 888887763 34679999999977 544 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|+++ ..++|++++++|+ |||++++.+........... ..+... .......+.++|.++++++||
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLK---KGGFIAVSEASWFTSERPAE------IEDFWM--DAYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEE---EEEEEEEEEEEESSSCCCHH------HHHHHH--HHCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC---HHHHHHHHHHHcC---CCcEEEEEEeeccCCCChHH------HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence 999883 3578999999999 79999999976554332210 111110 111224589999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999887665
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=138.50 Aligned_cols=162 Identities=12% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D 174 (279)
.+++.+. ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ ..++++++.+|+.+....||
T Consensus 63 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 139 (302)
T 3hem_A 63 LALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD 139 (302)
T ss_dssp HHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred HHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCcc
Confidence 3455444 56778999999999999999999987 79999999 888888764 34589999999976533699
Q ss_pred eeeehhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh-----hhhhcchhhh-hhc
Q 023625 175 AVLLKWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME-----TQLCFDILMV-SLF 241 (279)
Q Consensus 175 ~v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~-----~~~~~d~~~~-~~~ 241 (279)
+|++..++|++++ ++...+|+++.++|+ |||++++.+...++......... ...+.+.... ...
T Consensus 140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (302)
T 3hem_A 140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP---DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216 (302)
T ss_dssp EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC---TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred EEEEcchHHhcCccccccchhHHHHHHHHHHHhcC---CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC
Confidence 9999999999944 667899999999999 79999998887654311100000 0000011111 122
Q ss_pred CCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 242 RGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 242 ~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
++...+.+++.++++++||+++++...+
T Consensus 217 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 217 GGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 4567799999999999999999887664
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=136.03 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=113.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999998 8889999999 888887764 34689999999987 544 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|+++ ...+|++++++|+ |||++++.+........... ..+... .......+.+++.++++++||
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLK---KGGYLAVSECSWFTDERPAE------INDFWM--DAYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEE---EEEEEEEEEEEESSSCCCHH------HHHHHH--HHCTTCEEHHHHHHHHHHTTE
T ss_pred CceecC---HHHHHHHHHHHcC---CCCEEEEEEeeecCCCChHH------HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence 999983 3578999999999 79999999987654432211 111110 011234588999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
+++++..++
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999888765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=135.45 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=108.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
..+|||||||+|.++..+++ +..+++++|+ +.+++.+++. ..+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999999976 5778999999 8888887742 2469999999988323 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+++++..++|++++++|+ |||++++.+.........++ ...+.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLK---PDGELITLMYPITDHVGGPP------------------YKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEE---EEEEEEEEECCCSCCCSCSS------------------CCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCC---CCcEEEEEEecccccCCCCC------------------ccCCHHHHHHHHHHcCCeEEE
Confidence 998888999999999999 79999988765443222210 114889999999999999998
Q ss_pred EEecC
Q 023625 265 ITPML 269 (279)
Q Consensus 265 ~~~~~ 269 (279)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 87654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=142.15 Aligned_cols=145 Identities=17% Similarity=0.286 Sum_probs=113.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC---------C----CCeEEeeCCCCC-------C
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT---------N----DNLDFLGGNMFE-------A 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~----~ri~~~~~d~~~-------~ 169 (279)
.+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++. + .+++|+.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999987 7889999999 8888888753 1 689999999976 4
Q ss_pred CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 170 IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 170 ~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
.+ .||+|++..++|++++. ..+|++++++|+ |||++++.+...+..... ....+...+....+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk---pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLR---DGGELYFSDVYADRRLSE------AAQQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEEEESSCCCH------HHHHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcC---CCCEEEEEEeccccccCH------hHhhhHHHhhcccccCCC
Confidence 43 59999999999998774 589999999999 799999998776543222 111112222222345568
Q ss_pred HHHHHHHHHHCCCceeEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~ 267 (279)
.++|.++|+++||+.+++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 89999999999999886653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=131.15 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=110.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
.++..+|||||||+|.++..+++. +.+++++|+ +.+++.++.. ..+++++.+|+.+ +.+ .||+|++.+++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 456789999999999999999998 568999999 8888888763 5789999999987 544 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+++. ..+|++++++|+ |||.+++.+......... . .+............++.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~---pgG~l~i~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLK---SDGYACIAILGPTAKPRE------N-SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEE---EEEEEEEEEECTTCGGGG------G-GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhC---CCeEEEEEEcCCcchhhh------h-hhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 8765 588999999999 799999887543221110 0 111111111123456899999999999999998
Q ss_pred EEec
Q 023625 265 ITPM 268 (279)
Q Consensus 265 ~~~~ 268 (279)
...+
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 7643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=138.13 Aligned_cols=153 Identities=18% Similarity=0.323 Sum_probs=114.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++..+|+.+ +.+ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 46788999999999999999999999999999999 888887764 12579999999987 443 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hhhhhhhcch-hhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDI-LMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
+|++++.. .+|++++++|+ |||.+++.+.........+. ......+..+ ......++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLK---PGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEE---EEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcC---CCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998864 88999999999 79999998864422110000 0000111111 111223455567789999999999
Q ss_pred CceeEEEec
Q 023625 260 FSHYKITPM 268 (279)
Q Consensus 260 f~~~~~~~~ 268 (279)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=128.93 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=112.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDE 188 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~ 188 (279)
..+..+|||||||+|.++..+++... +++++|+ +.+++.+++..+++++..+| .. +...||+|++..++|++++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 56778999999999999999999873 8999999 88888887645799999999 32 22359999999999998764
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
..+|++++++|+ |||++++.+.........++. ...++.++|.++++ ||+++++...
T Consensus 92 --~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 92 --QHVISEVKRILK---DDGRVIIIDWRKENTGIGPPL----------------SIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp --HHHHHHHHHHEE---EEEEEEEEEECSSCCSSSSCG----------------GGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred --HHHHHHHHHhcC---CCCEEEEEEcCccccccCchH----------------hhhcCHHHHHHHHh--CcEEEEccCC
Confidence 588999999999 799999998765543322110 12258999999999 9999999988
Q ss_pred CCceeEEEEe
Q 023625 269 LGVRSLIEAY 278 (279)
Q Consensus 269 ~~~~~~i~~~ 278 (279)
+.....+.++
T Consensus 149 ~~~~~~l~~~ 158 (170)
T 3i9f_A 149 TPYHFGLVLK 158 (170)
T ss_dssp STTEEEEEEE
T ss_pred CCceEEEEEe
Confidence 7665544443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=129.55 Aligned_cols=144 Identities=11% Similarity=0.063 Sum_probs=104.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------C----CCeEEeeCCCCC-CC--Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------N----DNLDFLGGNMFE-AI--PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~ri~~~~~d~~~-~~--~~~D~v~ 177 (279)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. . .+++++.+|+.. +. ..||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4578999999999999999999999899999999 8888888742 1 289999999965 33 2599999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH----H
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK----K 253 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~----~ 253 (279)
+..++|++++++..++|++++++|+ |||.+++... ........ ......+........++.+++. +
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~~i~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTR---PQTVIVSTPN-KEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTC---CSEEEEEEEB-GGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhC---CCEEEEEccc-hhhhhhhc------ccCcccccccCceeeecHHHHHHHHHH
Confidence 9999999999888999999999999 7885544332 21110000 0000001111123345888988 8
Q ss_pred HHHHCCCceeEE
Q 023625 254 LFLAAGFSHYKI 265 (279)
Q Consensus 254 ll~~aGf~~~~~ 265 (279)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 889999976544
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=134.40 Aligned_cols=151 Identities=17% Similarity=0.320 Sum_probs=114.1
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--cc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~ 173 (279)
+++.++ ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .|
T Consensus 13 ~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 88 (239)
T 1xxl_A 13 MIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 88 (239)
T ss_dssp HHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence 444444 56788999999999999999999875 8999999 8888877641 2579999999977 544 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch-hhh-hhcCCeeCCHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI-LMV-SLFRGKERSVDDW 251 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~r~~~e~ 251 (279)
|+|++..++|++++. ..+|++++++|+ |||++++.+...+... . ...+... ..+ .......++.++|
T Consensus 89 D~v~~~~~l~~~~~~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (239)
T 1xxl_A 89 DIITCRYAAHHFSDV--RKAVREVARVLK---QDGRFLLVDHYAPEDP----V--LDEFVNHLNRLRDPSHVRESSLSEW 157 (239)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEECBCSSH----H--HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred EEEEECCchhhccCH--HHHHHHHHHHcC---CCcEEEEEEcCCCCCh----h--HHHHHHHHHHhccccccCCCCHHHH
Confidence 999999999999874 588999999999 7999999987765431 0 1111111 111 1112455689999
Q ss_pred HHHHHHCCCceeEEEec
Q 023625 252 KKLFLAAGFSHYKITPM 268 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~ 268 (279)
.++|+++||+++++...
T Consensus 158 ~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 158 QAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCcEEEEEee
Confidence 99999999998877654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=130.77 Aligned_cols=135 Identities=7% Similarity=0.058 Sum_probs=105.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----------------CCCeEEeeCCCCC-CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----------------NDNLDFLGGNMFE-AI- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------~~ri~~~~~d~~~-~~- 170 (279)
..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.|++. ..+++++.+|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999997 568999999 8999887642 3589999999988 43
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCH
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSV 248 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~ 248 (279)
..||+|++..++|++++++..+++++++++|+ |||+++++....+...... .....+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk---pgG~~~l~~~~~~~~~~~~-----------------~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMP---QACSGLLITLEYDQALLEG-----------------PPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC---SEEEEEEEEESSCSSSSSS-----------------CCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC---CCcEEEEEEEecCccccCC-----------------CCCCCCH
Confidence 25999999999999998888899999999999 7999666554333211000 0012478
Q ss_pred HHHHHHHHHCCCceeEEEec
Q 023625 249 DDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~~~~ 268 (279)
+|+.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777554
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=134.46 Aligned_cols=139 Identities=14% Similarity=0.291 Sum_probs=112.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999887 568999999 8888887742 2368999999876 433 499999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
++++++...+|++++++|+ |||++++.+..... . . .++. ..+...++.++|.++++++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~---~-~------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQE---G-V------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEE---EEEEEEEEEEEBSS---S-E------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcC---CCeEEEEEEccCCC---c-c------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 9999888899999999999 79999999887654 1 0 0110 112334589999999999999999
Q ss_pred EEEecC
Q 023625 264 KITPML 269 (279)
Q Consensus 264 ~~~~~~ 269 (279)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-17 Score=137.10 Aligned_cols=170 Identities=17% Similarity=0.246 Sum_probs=117.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----C----CCeEEeeCCCCC-CC
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----N----DNLDFLGGNMFE-AI 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----~ri~~~~~d~~~-~~ 170 (279)
..+++.++ ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. . .+++++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 34444443 33459999999999999999987 578999999 8888888741 2 689999999988 54
Q ss_pred C-ccceeee-hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhh----h----h-------
Q 023625 171 P-QANAVLL-KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMET----Q----L------- 231 (279)
Q Consensus 171 ~-~~D~v~~-~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~~~~~----~----~------- 231 (279)
+ .||+|++ ..++|++++++..++|++++++|+ |||++++.....+...... ..... . .
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLE---PGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEE---EEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcC---CCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 4 5998885 578888888888999999999999 7999888765443210000 00000 0 0
Q ss_pred --hcchhhhh-----------hcCCeeCCHHHHHHHHHHCCCceeEEEecCC------ceeEEEEe
Q 023625 232 --CFDILMVS-----------LFRGKERSVDDWKKLFLAAGFSHYKITPMLG------VRSLIEAY 278 (279)
Q Consensus 232 --~~d~~~~~-----------~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~~~ 278 (279)
...+.+.. ....+.++.++|.++|+++||+++++.+.+. ...+|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00000000 0012245999999999999999999987752 23566654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=137.13 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=118.9
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D 174 (279)
.+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+....||
T Consensus 81 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 81 LNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 3444443 4567899999999999999999987 569999999 888888764 23679999999866224699
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc----hhhh-hhhhcchhh-hhhcCCeeCCH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK----ESME-TQLCFDILM-VSLFRGKERSV 248 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~----~~~~-~~~~~d~~~-~~~~~~~~r~~ 248 (279)
+|++..++|++++++..++|+++.++|+ |||++++.+...+...... +... .....+... ....++...+.
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMP---ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSC---TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcC---CCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 9999999999988888999999999999 7999999888765421100 0000 000011111 11124566799
Q ss_pred HHHHHHHHHCCCceeEEEec
Q 023625 249 DDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~~~~ 268 (279)
+++.++++++||+++++...
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 99999999999999887664
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=130.56 Aligned_cols=138 Identities=15% Similarity=0.107 Sum_probs=108.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~ 187 (279)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.++.. .++++..+|+.. +.. .||+|++..++|++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRR-LGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHH-HTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHh-cCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999987 568999999 8888888764 267888898876 422 5999999999999998
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC-CceeEEE
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG-FSHYKIT 266 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG-f~~~~~~ 266 (279)
++...+|++++++|+ |||++++........... ... .....++.++|.++++++| |+++++.
T Consensus 118 ~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 118 DELADVLKLIWRALK---PGGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHHEE---EEEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcC---CCcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 888999999999999 799998875433221100 000 0012358999999999999 9999886
Q ss_pred ec
Q 023625 267 PM 268 (279)
Q Consensus 267 ~~ 268 (279)
..
T Consensus 181 ~~ 182 (211)
T 3e23_A 181 SS 182 (211)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=133.99 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=107.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC--ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 185 (279)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence 36789999999999999999998665 8999999 8888888752 3689999999977 543 59999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC------------CCCCCchhhhhhhhcch-----hhhh-hcCCeeCC
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE------------NQSQDKESMETQLCFDI-----LMVS-LFRGKERS 247 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~------------~~~~~~~~~~~~~~~d~-----~~~~-~~~~~~r~ 247 (279)
++ ..++|++++++|+ |||++++...... .......... ..+++- .+.. ......++
T Consensus 122 ~~--~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 122 AS--FDDICKKVYINLK---SSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPV-DRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp SC--HHHHHHHHHHHEE---EEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEE-CCTTCCCEEEEEETTEEEEEECCC
T ss_pred hh--HHHHHHHHHHHcC---CCcEEEEEeCCCccccCccccceeccCCceEEEEe-ccccccceEEEeeccccCccEecC
Confidence 65 4689999999999 7999988643211 0000000000 000000 0000 00122349
Q ss_pred HHHHHHHHHHCCCceeEEEec
Q 023625 248 VDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.++|.++|+++||+++++...
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHcCCeeeeeecC
Confidence 999999999999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=129.40 Aligned_cols=142 Identities=9% Similarity=0.014 Sum_probs=104.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------C----CCeEEeeCCCCC-CC--Ccccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------N----DNLDFLGGNMFE-AI--PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~ri~~~~~d~~~-~~--~~~D~v 176 (279)
..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++. . .+++++.+|+.. +. ..||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34678999999999999999999999899999999 8888887642 1 289999999865 33 259999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch---hhhhhcCCeeCCHHHHH-
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI---LMVSLFRGKERSVDDWK- 252 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~r~~~e~~- 252 (279)
++..++|++++++..++|++++++|+ |||.+++.... +.. ..+..+ .+........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk---pgG~li~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQ---PKIVIVTTPNI-EYN---------VKFANLPAGKLRHKDHRFEWTRSQFQN 173 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTC---CSEEEEEEEBH-HHH---------HHTC-----------CCSCBCHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcC---CCEEEEEccCc-ccc---------hhhcccccccccccccccccCHHHHHH
Confidence 99999999999888999999999999 79966554431 100 000000 00111123345889998
Q ss_pred ---HHHHHCCCceeEE
Q 023625 253 ---KLFLAAGFSHYKI 265 (279)
Q Consensus 253 ---~ll~~aGf~~~~~ 265 (279)
++++++||++...
T Consensus 174 ~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 174 WANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHcCceEEEE
Confidence 8999999987543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=129.33 Aligned_cols=148 Identities=15% Similarity=0.219 Sum_probs=107.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-CCeEEeeCCCCCCCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-DNLDFLGGNMFEAIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~~ 187 (279)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++.. .+++++.+|+.+..+ .||+|++.++||++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999999876 6999999 88898887532 289999999877422 5999999999999987
Q ss_pred hHHHHHHHHHH-HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcc---h--hhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 188 EESVKLLKKCK-EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD---I--LMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 188 ~~~~~~L~~~~-~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d---~--~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
. .++|++++ ++|+ |||++++.+......... .......+.. + ..........++.+++.++++++||+
T Consensus 119 ~--~~~l~~~~~~~Lk---pgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 192 (250)
T 2p7i_A 119 P--VALLKRINDDWLA---EGGRLFLVCPNANAVSRQ-IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 192 (250)
T ss_dssp H--HHHHHHHHHTTEE---EEEEEEEEEECTTCHHHH-HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred H--HHHHHHHHHHhcC---CCCEEEEEcCChHHHHHH-HHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCe
Confidence 5 58899999 9999 799999977533211000 0000000000 0 00011123557999999999999999
Q ss_pred eeEEEe
Q 023625 262 HYKITP 267 (279)
Q Consensus 262 ~~~~~~ 267 (279)
++++..
T Consensus 193 ~~~~~~ 198 (250)
T 2p7i_A 193 VTYRSG 198 (250)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 988764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=133.57 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=110.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vl 182 (279)
..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999995 89999999 888887764 33489999999987 444 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec-----C---CCCCCchhhhhhhhcchhh--hhhcCCeeCCHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI-----E---NQSQDKESMETQLCFDILM--VSLFRGKERSVDDWK 252 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~~~~r~~~e~~ 252 (279)
|++++. .++|++++++|+ |||.+++.+... . +....++......+..+.. ....+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVK---KGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEE---EEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcC---CCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999876 488999999999 799999988651 1 1111100000001111111 111233344667899
Q ss_pred HHHHHCCCceeEEEe
Q 023625 253 KLFLAAGFSHYKITP 267 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~ 267 (279)
++|+++||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999887743
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-16 Score=128.89 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=111.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--cccee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAV 176 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v 176 (279)
..+.+.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.++.. .+++++.+|+.+ +.+ .||+|
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH-PQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC-TTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc-cCCEEEECchhhCCCCCCCEeEE
Confidence 33444443 45678999999999999999997 6789999999 8889988876 399999999987 554 59999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHH
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~ 256 (279)
++.+++|++++. .++|++++++|+ ||++++.+...+..... .....+.. ..........+.+++. +|+
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~l~ 166 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRI----WLYDYFPF-LWEDALRFLPLDEQIN-LLQ 166 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCC----GGGGTCHH-HHHHHHTSCCHHHHHH-HHH
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHH----HHHHHHHH-HhhhhhhhCCCHHHHH-HHH
Confidence 999999999664 588999999999 79999988754332211 00000000 0111113344678888 999
Q ss_pred HCCCceeEEEec
Q 023625 257 AAGFSHYKITPM 268 (279)
Q Consensus 257 ~aGf~~~~~~~~ 268 (279)
++||+.+++...
T Consensus 167 ~aGF~~v~~~~~ 178 (261)
T 3ege_A 167 ENTKRRVEAIPF 178 (261)
T ss_dssp HHHCSEEEEEEC
T ss_pred HcCCCceeEEEe
Confidence 999998888665
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=127.42 Aligned_cols=149 Identities=11% Similarity=0.184 Sum_probs=110.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCC-CCC--cccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFE-AIP--QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~-~~~--~~D~v 176 (279)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..++++..+|+.+ +.+ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 456789999999999999999998 669999999 8888877641 2368999999987 543 59999
Q ss_pred eehhhhccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh---------------
Q 023625 177 LLKWILHNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--------------- 240 (279)
Q Consensus 177 ~~~~vlh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--------------- 240 (279)
++..++|++++ ++..++|++++++|+ |||++++.+......... ........+.....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLK---PGAYLYLVEFGQNWHLKL---YRKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEE---EEEEEEEEEEBCCTTSHH---HHHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcC---CCeEEEEEECCcchhHHH---HHHHhhhhccchhhhcceEecccccCCcc
Confidence 99999999976 446689999999999 799999988755322110 00000001100000
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
.....++.++|.++++++||+++++..
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 002356999999999999999998864
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=122.40 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=106.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeeh-hhhccC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLK-WILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~-~vlh~~ 185 (279)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++. .++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 456789999999999999999987 568999999 88888888654679999999987 554 59999998 799999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++++...+|+++.++|+ |||.+++..... ..++.+++.++++++||++.++
T Consensus 122 ~~~~~~~~l~~~~~~l~---~~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALG---ADGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEE---EEEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhC---CCCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeee
Confidence 88888999999999999 799888754211 1147889999999999999888
Q ss_pred Eec
Q 023625 266 TPM 268 (279)
Q Consensus 266 ~~~ 268 (279)
...
T Consensus 173 ~~~ 175 (195)
T 3cgg_A 173 FES 175 (195)
T ss_dssp ESS
T ss_pred ecc
Confidence 543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=133.49 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=112.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~ 177 (279)
..+++.+. ..+..+|||||||+|.++..+++ +..+++++|+ +.+++.+++..+++++..+|+.+ +.+ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 33444444 45678999999999999999998 7789999999 88998887644789999999987 444 599999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh-------hhcCCeeCCHHH
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV-------SLFRGKERSVDD 250 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~r~~~e 250 (279)
+..++|++++. ..+|++++++|+ |||++++........ . .. ...+...... ........+.++
T Consensus 123 ~~~~l~~~~d~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 123 SNAMLHWVKEP--EAAIASIHQALK---SGGRFVAEFGGKGNI--K-YI--LEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEECTTTT--H-HH--HHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred EcchhhhCcCH--HHHHHHHHHhcC---CCcEEEEEecCCcch--H-HH--HHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 99999998875 488999999999 799998866432211 0 10 0001100000 000123458999
Q ss_pred HHHHHHHCCCceeEEEec
Q 023625 251 WKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~ 268 (279)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999998877544
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=124.10 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=106.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccc
Confidence 34678999999999999999998732 38999999 8888888753 2479999999987 543 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hh---------hhhhhc-----chhhhh-hcCCeeCCH
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SM---------ETQLCF-----DILMVS-LFRGKERSV 248 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~---------~~~~~~-----d~~~~~-~~~~~~r~~ 248 (279)
+++ ...+|++++++|+ |||++++............+ +. ....++ ...++. ......++.
T Consensus 120 ~~~--~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 120 VED--VARLFRTVHQALS---PGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp CSC--HHHHHHHHHHHEE---EEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred cch--HHHHHHHHHHhcC---cCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 875 4689999999999 79999987642110000000 00 000000 000000 111233689
Q ss_pred HHHHHHHHHCCCceeEEEec
Q 023625 249 DDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~~~~ 268 (279)
++|.++|+++||+++++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEeeeeccC
Confidence 99999999999999988754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=127.59 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehh-hhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKW-ILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~-vlh~ 184 (279)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 468999999 888888774 22389999999987 444 599999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 185 WN-DEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 185 ~~-~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
++ +++..++|++++++|+ |||.+++.
T Consensus 115 ~~~~~~~~~~l~~~~~~L~---pgG~l~~~ 141 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLK---EGGVFIFD 141 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEE---EEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcC---CCcEEEEE
Confidence 84 4678899999999999 79988873
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=125.09 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=81.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehh-hh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKW-IL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~-vl 182 (279)
+.+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999999887 78999999 888888774 23679999999877 444 599999976 88
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 183 HNW-NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 183 h~~-~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
|++ ++++..++|++++++|+ |||++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~---pgG~l~~ 135 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLT---DGGKLLF 135 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEE---EEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcC---CCeEEEE
Confidence 887 55678899999999999 7998876
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=130.74 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=109.5
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceeee
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVLL 178 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~~ 178 (279)
.+++.+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 3444443 45678999999999999999999999999999999 88998887645789999999987 422 5999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh---hhh-------hcCCeeCCH
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL---MVS-------LFRGKERSV 248 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~---~~~-------~~~~~~r~~ 248 (279)
..++|++++ ...+|++++++|+ |||++++....... . +. ......+. .+. .......+.
T Consensus 102 ~~~l~~~~~--~~~~l~~~~~~L~---pgG~l~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T 2p35_A 102 NAVFQWVPD--HLAVLSQLMDQLE---SGGVLAVQMPDNLQ---E-PT--HIAMHETADGGPWKDAFSGGGLRRKPLPPP 170 (259)
T ss_dssp ESCGGGSTT--HHHHHHHHGGGEE---EEEEEEEEEECCTT---S-HH--HHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred eCchhhCCC--HHHHHHHHHHhcC---CCeEEEEEeCCCCC---c-HH--HHHHHHHhcCcchHHHhccccccccCCCCH
Confidence 999999866 4588999999999 79999988753211 1 10 00000000 000 012344689
Q ss_pred HHHHHHHHHCCCce
Q 023625 249 DDWKKLFLAAGFSH 262 (279)
Q Consensus 249 ~e~~~ll~~aGf~~ 262 (279)
++|.++|+++||++
T Consensus 171 ~~~~~~l~~aGf~v 184 (259)
T 2p35_A 171 SDYFNALSPKSSRV 184 (259)
T ss_dssp HHHHHHHGGGEEEE
T ss_pred HHHHHHHHhcCCce
Confidence 99999999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-17 Score=136.70 Aligned_cols=148 Identities=14% Similarity=0.263 Sum_probs=106.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------C---------------------------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------N--------------------------- 156 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--------------------------- 156 (279)
+.+..+|||||||+|.++..++++++..+++++|+ +.+++.|++. .
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 34678999999999999999999999999999999 8888877641 0
Q ss_pred ------------------------------CCeEEeeCCCCCCC--------CccceeeehhhhccC----ChhHHHHHH
Q 023625 157 ------------------------------DNLDFLGGNMFEAI--------PQANAVLLKWILHNW----NDEESVKLL 194 (279)
Q Consensus 157 ------------------------------~ri~~~~~d~~~~~--------~~~D~v~~~~vlh~~----~~~~~~~~L 194 (279)
.+++|..+|+.... ..||+|++..+++++ ++++..++|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 58999999998622 259999999998554 777889999
Q ss_pred HHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH--CCCceeEEEec
Q 023625 195 KKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA--AGFSHYKITPM 268 (279)
Q Consensus 195 ~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~--aGf~~~~~~~~ 268 (279)
++++++|+ |||.+++....+..-.. .....-............++++.++|.+ +||+.+++...
T Consensus 204 ~~~~~~Lk---pGG~lil~~~~~~~y~~-------~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 204 RRIYRHLR---PGGILVLEPQPWSSYGK-------RKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHEE---EEEEEEEECCCHHHHHT-------TTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHhC---CCcEEEEecCCchhhhh-------hhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 79988875322211000 0000000000111223357899999999 99998888654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=127.25 Aligned_cols=160 Identities=11% Similarity=0.114 Sum_probs=111.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hh------HHhhccc------CCCCeEEeeCC-C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PH------VVDNLQG------TNDNLDFLGGN-M 166 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~------~~~ri~~~~~d-~ 166 (279)
.+++.++ ..+..+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ ..++++++.+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 3444444 5677899999999999999999996 7789999999 54 6776653 12689999998 5
Q ss_pred CC---CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh-
Q 023625 167 FE---AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL- 240 (279)
Q Consensus 167 ~~---~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 240 (279)
.. +.+ .||+|++..++|++++.+ .+++.++.+++ |||++++.+...+..................+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAA---VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIA 186 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTT---TCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhC---CCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcc
Confidence 43 223 599999999999998875 36777767666 79999999987765432210000000000000000
Q ss_pred ---cC--CeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 241 ---FR--GKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 241 ---~~--~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.. ....+.+++.++++++||+++++...
T Consensus 187 ~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 187 PSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 11 23469999999999999999887665
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=125.82 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=108.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-----C-C-cc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-----I-P-QA 173 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----~-~-~~ 173 (279)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+. . . .|
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence 3444443 345689999999999999999988 668999999 8899998876 7788888877541 1 2 39
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh------cCCeeCC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL------FRGKERS 247 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~r~ 247 (279)
|+|++..++| ..+ ...+|++++++|+ |||++++.+......... +. ...+........ .....++
T Consensus 118 D~v~~~~~l~-~~~--~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQD--IIELLSAMRTLLV---PGGALVIQTLHPWSVADG-DY--QDGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSC--CHHHHHHHHHTEE---EEEEEEEEECCTTTTCTT-CC--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhh--HHHHHHHHHHHhC---CCeEEEEEecCccccCcc-cc--ccccchhhhhccccCcccceEEEec
Confidence 9999999999 544 3589999999999 799999987654332211 00 000110000000 0123459
Q ss_pred HHHHHHHHHHCCCceeEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~ 267 (279)
.++|.++|+++||+++++..
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 99999999999999998875
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=125.49 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=109.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC-------ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP-------QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~-------~~D~v~~~ 179 (279)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .+|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999987 7999999 8888888752 3589999999987 322 28999999
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh--h--hhcchhhhhhcCCeeCCHHHHHHHH
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET--Q--LCFDILMVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~--~--~~~d~~~~~~~~~~~r~~~e~~~ll 255 (279)
.++|++++++..++|++++++|+ |||++++++...++.......... . ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLG---KQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHT---TTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcC---CCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 99999998888999999999999 799999998754421000000000 0 0000000001111235899999999
Q ss_pred HHCCCceeEEEe
Q 023625 256 LAAGFSHYKITP 267 (279)
Q Consensus 256 ~~aGf~~~~~~~ 267 (279)
+||++++...
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999887644
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=118.66 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=109.8
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
+.+.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .||
T Consensus 24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 444443 345679999999999999999987 569999999 888888764 12479999999987 444 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..++|++++++..++|++++++|+ |||.+++++.........+ ......++.++++++
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~ 161 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTK---PGGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRRY 161 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEE---EEEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcC---CCeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHHH
Confidence 9999999999998888999999999999 7999999887654432110 001223478899999
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
|++ |++++....
T Consensus 162 ~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 162 YEG--WERVKYNED 173 (199)
T ss_dssp TTT--SEEEEEECC
T ss_pred hcC--CeEEEeccc
Confidence 987 988877543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=125.88 Aligned_cols=133 Identities=8% Similarity=0.024 Sum_probs=105.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-C---------------------CCCeEEeeCCCCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-T---------------------NDNLDFLGGNMFE 168 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------------------~~ri~~~~~d~~~ 168 (279)
.+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.|++ . ..+++++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 568999999 888888753 1 2589999999988
Q ss_pred -CC---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCe
Q 023625 169 -AI---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK 244 (279)
Q Consensus 169 -~~---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 244 (279)
+. ..||+|+...++|.+++++..+++++++++|+ |||+++++....+......+ ..
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk---pGG~l~l~~~~~~~~~~~g~-----------------~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLR---KEFQYLVAVLSYDPTKHAGP-----------------PF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE---EEEEEEEEEEECCTTSCCCS-----------------SC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC---CCeEEEEEEEecCCccCCCC-----------------CC
Confidence 43 35999999999999998888899999999999 79999876655432211100 01
Q ss_pred eCCHHHHHHHHHHCCCceeEEEe
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
..+.+|+.+++++ +|++..+..
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEec
Confidence 1488999999988 598877654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=127.58 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=108.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C-CC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A-IP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~--~~D~v~~~~v 181 (279)
+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+ + .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999998 679999999 888888774 22689999999987 3 23 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc--chhhh--------hhcCCeeCCHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF--DILMV--------SLFRGKERSVDDW 251 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~--d~~~~--------~~~~~~~r~~~e~ 251 (279)
+|++++. .++|++++++|+ |||.+++.+......... ..... ..... .......++.+++
T Consensus 146 l~~~~~~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLR---PGGVLSLMFYNAHGLLMH-----NMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEE---EEEEEEEEEEBHHHHHHH-----HHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred hhcccCH--HHHHHHHHHHcC---CCeEEEEEEeCCchHHHH-----HHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 9999775 579999999999 799999887543221000 00000 00000 0011345689999
Q ss_pred HHHHHHCCCceeEEEecC
Q 023625 252 KKLFLAAGFSHYKITPML 269 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~~ 269 (279)
.++++++||+++++..+.
T Consensus 216 ~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 216 YLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHHHTTCEEEEEEEES
T ss_pred HHHHHHCCCceeeeeeEE
Confidence 999999999999887664
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-15 Score=119.70 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=102.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDE 188 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~ 188 (279)
+..+|||||||+|.++..+++. +++|. +.+++.+++. ++++..+|+.+ +.+ .||+|++..++|++++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH
Confidence 3789999999999999988764 99999 8888888865 79999999876 544 49999999999998764
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--hhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--VSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
.++|+++.++|+ |||.+++.+..... +. ......... ........++.++|.++|+++||+++++.
T Consensus 119 --~~~l~~~~~~L~---pgG~l~i~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 119 --ERALKEAYRILK---KGGYLIVGIVDRES-----FL--GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp --HHHHHHHHHHEE---EEEEEEEEEECSSS-----HH--HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred --HHHHHHHHHHcC---CCcEEEEEEeCCcc-----HH--HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 589999999999 79999987753221 10 000000000 00112345699999999999999998886
Q ss_pred ec
Q 023625 267 PM 268 (279)
Q Consensus 267 ~~ 268 (279)
..
T Consensus 187 ~~ 188 (219)
T 1vlm_A 187 QT 188 (219)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=124.03 Aligned_cols=146 Identities=11% Similarity=0.146 Sum_probs=104.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 8888887642 4689999999977 544 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc----CCeeCCHHHHHHHHHHC
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF----RGKERSVDDWKKLFLAA 258 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~r~~~e~~~ll~~a 258 (279)
|++++. ..+|++++++|+ |||.+++. ...++ ..........+..+...... .....+.+++.++++++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~---pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLK---PGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEE---EEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCC---CCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 998864 588999999999 79999887 21111 11000000011111100000 11234789999999999
Q ss_pred CCceeEEE
Q 023625 259 GFSHYKIT 266 (279)
Q Consensus 259 Gf~~~~~~ 266 (279)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=121.87 Aligned_cols=156 Identities=15% Similarity=0.207 Sum_probs=108.5
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QAN 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D 174 (279)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +.+ .||
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCccC
Confidence 44554443 46789999999999999999998 4 89999999 88888887642 3788888865 233 499
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh-hhcchhhhhhcCCeeCCHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ-LCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
+|++..++|++++. ..+|++++++|+ |||.+++.................. ...+...........++.++|.+
T Consensus 96 ~v~~~~~l~~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (230)
T 3cc8_A 96 CVIFGDVLEHLFDP--WAVIEKVKPYIK---QNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR 170 (230)
T ss_dssp EEEEESCGGGSSCH--HHHHHHTGGGEE---EEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHH
T ss_pred EEEECChhhhcCCH--HHHHHHHHHHcC---CCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHH
Confidence 99999999999875 488999999999 7999998765432110000000000 00000000011124569999999
Q ss_pred HHHHCCCceeEEEec
Q 023625 254 LFLAAGFSHYKITPM 268 (279)
Q Consensus 254 ll~~aGf~~~~~~~~ 268 (279)
+++++||+++++...
T Consensus 171 ~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 171 MFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCeEEEEEec
Confidence 999999999888764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-15 Score=117.97 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=99.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeee
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLL 178 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~ 178 (279)
.+++.+. ...+..+|||||||+|.++..++ .+++++|+.+. ++++..+|+.+ +.+ .||+|++
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence 3444443 13466899999999999998773 68999998332 57788899877 544 4999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
..++| +. +...+|++++++|+ |||.+++.+.... ..+.+++.++++++
T Consensus 122 ~~~l~-~~--~~~~~l~~~~~~L~---~gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 122 CLSLM-GT--NIRDFLEEANRVLK---PGGLLKVAEVSSR--------------------------FEDVRTFLRAVTKL 169 (215)
T ss_dssp ESCCC-SS--CHHHHHHHHHHHEE---EEEEEEEEECGGG--------------------------CSCHHHHHHHHHHT
T ss_pred ehhcc-cc--CHHHHHHHHHHhCC---CCeEEEEEEcCCC--------------------------CCCHHHHHHHHHHC
Confidence 99998 33 35689999999999 7999999874210 01788999999999
Q ss_pred CCceeEEEecCCceeEEEEe
Q 023625 259 GFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 259 Gf~~~~~~~~~~~~~~i~~~ 278 (279)
||+++++...++...+++++
T Consensus 170 Gf~~~~~~~~~~~~~~~~~~ 189 (215)
T 2zfu_A 170 GFKIVSKDLTNSHFFLFDFQ 189 (215)
T ss_dssp TEEEEEEECCSTTCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEEEE
Confidence 99998877666666666665
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=116.24 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=107.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC-ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP-QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh 183 (279)
..+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ...++++..+|+.+..+ .||+|++..++|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999876 56779999999 888888774 12349999999987443 699999987775
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+ ...+++++.++|+ |||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~---~gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLN---EDGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEE---EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcC---CCCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 3 4688999999999 7999988654321 45688999999999999
Q ss_pred EEEecCCceeEEEEeC
Q 023625 264 KITPMLGVRSLIEAYP 279 (279)
Q Consensus 264 ~~~~~~~~~~~i~~~~ 279 (279)
++.....+.+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9999899999887765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=127.40 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=84.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC-C---CC--ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE-A---IP--QAN 174 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~-~---~~--~~D 174 (279)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ..++.+..+|+.+ + .+ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 3567899999999999999999984 48999999 8888887631 2578899999876 4 33 599
Q ss_pred eeeeh-hhhccCCh-----hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 175 AVLLK-WILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 175 ~v~~~-~vlh~~~~-----~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|++. +++|++++ ++..++|++++++|+ |||.+++...
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR---PGGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE---EEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC---CCeEEEEEeC
Confidence 99998 89999988 778899999999999 7999988764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.97 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-------CCCeEEeeCCCCC-C--C------Ccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-------NDNLDFLGGNMFE-A--I------PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~ri~~~~~d~~~-~--~------~~~ 173 (279)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++. ..+++++.+|+.+ + . ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 8888888741 5799999999987 3 2 259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|+|++..++|++ +..++|++++++|+ |||.+++.+..
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~Lk---pgG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLR---KDGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEE---EEEEEEEEEEE
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcC---CCcEEEEEecC
Confidence 999999999998 35689999999999 79999986544
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=122.27 Aligned_cols=154 Identities=10% Similarity=0.022 Sum_probs=109.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC-C--ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI-P--QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~v~~~ 179 (279)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5568999999 888887774 12478999999987 54 2 49999999
Q ss_pred hhhcc--CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC-------CCchhh-----------h-hhhhcchhhh
Q 023625 180 WILHN--WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS-------QDKESM-----------E-TQLCFDILMV 238 (279)
Q Consensus 180 ~vlh~--~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~-------~~~~~~-----------~-~~~~~d~~~~ 238 (279)
.++|+ .+.++..++|++++++|+ |||++++......... ...... . ....+...+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLR---PGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEE---EEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99988 567778899999999999 7999998765421100 000000 0 0000000000
Q ss_pred hh---cCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 239 SL---FRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 239 ~~---~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.. .....++.+++.++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00 0123458999999999999999988754
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=120.62 Aligned_cols=98 Identities=9% Similarity=0.193 Sum_probs=84.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
+...+|||||||+|.++..|++.+ .+++++|+ +.+++.|++. .+++++.+|+.+ +.+ .||+|++..++|.++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~ 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence 456799999999999999999875 57999999 8999999876 799999999987 665 4999999999987754
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
+ +++++++++|| |||.++++....+
T Consensus 115 ~---~~~~e~~rvLk---pgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 D---RFWAELRRVAR---PGAVFAAVTYGLT 139 (257)
T ss_dssp H---HHHHHHHHHEE---EEEEEEEEEECCC
T ss_pred H---HHHHHHHHHcC---CCCEEEEEECCCC
Confidence 3 68999999999 7999998876443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=121.93 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=95.2
Q ss_pred CCCEEEEecCCccHHHH----HHHHHCCCCeE--EEeeC-hhHHhhcccC------CCCeEE--eeCCCCC-C------C
Q 023625 113 GLKSLVDVAGGTGIMAR----AIATAFPDIKC--TVFDL-PHVVDNLQGT------NDNLDF--LGGNMFE-A------I 170 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~------~~ri~~--~~~d~~~-~------~ 170 (279)
+..+|||||||+|.++. .++.++|+.++ +++|. +.+++.+++. ..++.+ ..++..+ + .
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45699999999997655 44556788754 99999 8888877631 134444 4555432 1 1
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh--cCCeeC
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--FRGKER 246 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~r 246 (279)
..||+|++.++||+++|. .+.|++++++|+ |||++++.+...+ . .. ...+....-... .....+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk---pgG~l~i~~~~~~----~-~~--~~~~~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLG---TNAKMLIIVVSGS----S-GW--DKLWKKYGSRFPQDDLCQYI 199 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEE---EEEEEEEEEECTT----S-HH--HHHHHHHGGGSCCCTTCCCC
T ss_pred CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcC---CCcEEEEEEecCC----c-cH--HHHHHHHHHhccCCCcccCC
Confidence 259999999999999885 478999999999 7999999864311 1 11 011111000000 012346
Q ss_pred CHHHHHHHHHHCCCceeEE
Q 023625 247 SVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~ 265 (279)
+.++|.++|+++||++...
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999997764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=117.44 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=107.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999985555544 5679999999 888888764 23679999999987 544 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh-hhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ-LCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
|++++++..++|++++++|+ |||.+++.+...++........... .+.............++.+++.++|+++||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLK---PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcC---CCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 99988888999999999999 7999999887655432110000000 0000000000112456899999999999987
Q ss_pred eeEE
Q 023625 262 HYKI 265 (279)
Q Consensus 262 ~~~~ 265 (279)
..+.
T Consensus 177 ~~~~ 180 (209)
T 2p8j_A 177 FKED 180 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6554
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=119.24 Aligned_cols=141 Identities=15% Similarity=0.146 Sum_probs=107.8
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
.+++.++ ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .||
T Consensus 111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 186 (286)
T 3m70_A 111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186 (286)
T ss_dssp HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 3444444 346789999999999999999998 568999999 888887764 22389999999987 334 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..++|++++++...+|+++.++|+ |||.++++.....+....+ .......+.+++.++
T Consensus 187 ~i~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 187 FIVSTVVFMFLNRERVPSIIKNMKEHTN---VGGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKEY 248 (286)
T ss_dssp EEEECSSGGGSCGGGHHHHHHHHHHTEE---EEEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHHH
T ss_pred EEEEccchhhCCHHHHHHHHHHHHHhcC---CCcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHHH
Confidence 9999999999999999999999999999 7999888776554432210 001123467788888
Q ss_pred HHHCCCceeEEE
Q 023625 255 FLAAGFSHYKIT 266 (279)
Q Consensus 255 l~~aGf~~~~~~ 266 (279)
++. |+++...
T Consensus 249 ~~~--~~~~~~~ 258 (286)
T 3m70_A 249 YKD--WEFLEYN 258 (286)
T ss_dssp TTT--SEEEEEE
T ss_pred hcC--CEEEEEE
Confidence 865 8877664
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=125.40 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=98.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CC------------------------------
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TN------------------------------ 156 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~------------------------------ 156 (279)
.+..+|||||||+|.++..++...- .+++++|+ +.+++.|++ ..
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3567999999999988776554421 26999999 888887653 00
Q ss_pred CCeE-EeeCCCCCC-------CCccceeeehhhhccCC--hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchh
Q 023625 157 DNLD-FLGGNMFEA-------IPQANAVLLKWILHNWN--DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES 226 (279)
Q Consensus 157 ~ri~-~~~~d~~~~-------~~~~D~v~~~~vlh~~~--~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~ 226 (279)
.++. ++.+|+.+. .+.||+|++..+||+.. .++..++|++++++|| |||.+++.+......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK---PGG~li~~~~~~~~~------ 203 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK---PGGHLVTTVTLRLPS------ 203 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE---EEEEEEEEEESSCCE------
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC---CCcEEEEEEeecCcc------
Confidence 1233 889998872 23599999999999753 3567789999999999 799999986532110
Q ss_pred hhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 227 METQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 227 ~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
....-. .......+.+++.++|+++||+++++...
T Consensus 204 ----~~~g~~---~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 ----YMVGKR---EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ----EEETTE---EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----ceeCCe---EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 000000 00112348999999999999999888654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-15 Score=123.69 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=103.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CC-------------------------------
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--ND------------------------------- 157 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~------------------------------- 157 (279)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3467999999999999999988765 58999999 8888877641 11
Q ss_pred -Ce-EEeeCCCCCC-C------CccceeeehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchh
Q 023625 158 -NL-DFLGGNMFEA-I------PQANAVLLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES 226 (279)
Q Consensus 158 -ri-~~~~~d~~~~-~------~~~D~v~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~ 226 (279)
++ ++..+|+.+. . ..||+|++..++|++++. +...+|++++++|+ |||.+++.+.....
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk---pgG~li~~~~~~~~------- 203 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK---PGGFLVMVDALKSS------- 203 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE---EEEEEEEEEESSCC-------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC---CCcEEEEEecCCCc-------
Confidence 27 8999999762 1 249999999999955433 67799999999999 79999988743211
Q ss_pred hhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 227 METQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 227 ~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
++... -........+.+++.++|+++||+++++...+
T Consensus 204 -----~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 204 -----YYMIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -----EEEET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -----eEEcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00000 00001223488999999999999999887554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=109.83 Aligned_cols=120 Identities=8% Similarity=0.235 Sum_probs=97.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCC---Ccc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAI---PQA 173 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~---~~~ 173 (279)
++..+. ..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++. .++++++.+|+.+.. +.|
T Consensus 32 ~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 32 TLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 444444 56778999999999999999999999999999999 8888888741 268999999997632 469
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|+|++...++ +..++++++.++|+ |||++++...... +.+++.+
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~Lk---pgG~l~~~~~~~~----------------------------~~~~~~~ 153 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLK---SEGVIVLNAVTLD----------------------------TLTKAVE 153 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCC---TTCEEEEEECBHH----------------------------HHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcC---CCeEEEEEecccc----------------------------cHHHHHH
Confidence 9999988775 35688999999999 7999988553210 3567888
Q ss_pred HHHHCCC
Q 023625 254 LFLAAGF 260 (279)
Q Consensus 254 ll~~aGf 260 (279)
+++++||
T Consensus 154 ~l~~~g~ 160 (204)
T 3e05_A 154 FLEDHGY 160 (204)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 9999998
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-13 Score=111.72 Aligned_cols=97 Identities=27% Similarity=0.417 Sum_probs=81.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeeh-hhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLK-WILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~-~vlh 183 (279)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++. ..+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 45689999999999999999987 568999999 888888774 23479999999987 444 59999986 4667
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
++++++..++|++++++|+ |||.+++.
T Consensus 118 ~~~~~~~~~~l~~~~~~L~---pgG~li~~ 144 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALK---PGGVFITD 144 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEE---EEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcC---CCeEEEEe
Confidence 7788888999999999999 79987763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-14 Score=125.16 Aligned_cols=149 Identities=12% Similarity=0.038 Sum_probs=105.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC------CC--C
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE------AI--P 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~------~~--~ 171 (279)
..+++.+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .+......+.. +. .
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCCC
Confidence 44555554 556789999999999999999987 458999999 8889888864 23333322211 11 3
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++.+++|++++ ...+|++++++|+ |||.+++........ .. ...+..........++.+++
T Consensus 171 ~fD~I~~~~vl~h~~d--~~~~l~~~~r~Lk---pgG~l~i~~~~~~~~-------~~--~~~~~~~~~~~~~~~s~~~l 236 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY--VQSVLEGVDALLA---PDGVFVFEDPYLGDI-------VA--KTSFDQIFDEHFFLFSATSV 236 (416)
T ss_dssp CEEEEEEESCGGGCTT--HHHHHHHHHHHEE---EEEEEEEEEECHHHH-------HH--HTCGGGCSTTCCEECCHHHH
T ss_pred CEEEEEECChHHhcCC--HHHHHHHHHHHcC---CCeEEEEEeCChHHh-------hh--hcchhhhhhhhhhcCCHHHH
Confidence 5999999999999986 4688999999999 799998865432210 00 00011111123445699999
Q ss_pred HHHHHHCCCceeEEEecC
Q 023625 252 KKLFLAAGFSHYKITPML 269 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~~ 269 (279)
.++++++||+++++...+
T Consensus 237 ~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 237 QGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEEcc
Confidence 999999999999988765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=105.98 Aligned_cols=127 Identities=9% Similarity=0.162 Sum_probs=99.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC--ccceeeehhhhccCChh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP--QANAVLLKWILHNWNDE 188 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~~~ 188 (279)
.+..+|||+|||+|.++..++++. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|++...+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 456799999999999999999986 9999999 888877 3789999999988654 59999998888865443
Q ss_pred -------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 189 -------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 189 -------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
+...+++++.+.+ | ||++++++... .+.+++.++++++||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~ 142 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYG 142 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCE
T ss_pred ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCc
Confidence 4467888898888 4 89998876321 1467889999999999
Q ss_pred eeEEEec-CCceeEEEE
Q 023625 262 HYKITPM-LGVRSLIEA 277 (279)
Q Consensus 262 ~~~~~~~-~~~~~~i~~ 277 (279)
...+... .+...++..
T Consensus 143 ~~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 143 TRILKVRKILGETVYII 159 (170)
T ss_dssp EEEEEEEECSSSEEEEE
T ss_pred EEEEEeeccCCceEEEE
Confidence 8888654 344444443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=121.71 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=96.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-C---C------------------------------
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-N---D------------------------------ 157 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~---~------------------------------ 157 (279)
+..+|||||||+|.++ .++...+..+++++|+ +.+++.|++. . .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445569999999 8888776541 0 0
Q ss_pred -CeEEeeCCCCC--C-----CC--ccceeeehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch
Q 023625 158 -NLDFLGGNMFE--A-----IP--QANAVLLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 225 (279)
Q Consensus 158 -ri~~~~~d~~~--~-----~~--~~D~v~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~ 225 (279)
.++++.+|+.+ + .+ .||+|++..+||+++++ +..++|++++++|+ |||++++.+......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk---pGG~l~~~~~~~~~~----- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR---PGGHLLLIGALEESW----- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE---EEEEEEEEEEESCCE-----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC---CCCEEEEEEecCcce-----
Confidence 14566678876 2 12 29999999999986543 67899999999999 799999986432110
Q ss_pred hhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 226 SMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 226 ~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.. ..+. ......++.++|.++|+++||+++++...
T Consensus 222 ---~~-~~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 ---YL-AGEA----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ---EE-ETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---EE-cCCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 0000 00122358999999999999998887644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=110.17 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=100.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
++. +|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..++++..+|+.+ +.+ .||+|++. +.
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 345 9999999999999999987 569999999 8888887742 2489999999987 544 59999984 34
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+++.++..++|+++.++|+ |||.+++.+......... .... ......++.+++.++|+ ||+++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~---pgG~l~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLK---PGGVFILEGFAPEQLQYN---------TGGP---KDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCC---SSEEEEEEEECTTTGGGT---------SCCS---SSGGGCCCHHHHHHHCS--SSCEE
T ss_pred cCCHHHHHHHHHHHHHhcC---CCcEEEEEEeccccccCC---------CCCC---CcceeecCHHHHHHHhc--CceEE
Confidence 4577788999999999999 799999887654321100 0000 00123459999999999 99998
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
++..
T Consensus 167 ~~~~ 170 (202)
T 2kw5_A 167 IANN 170 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=111.13 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=100.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCC-----C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEA-----I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~-~~~D~v~~~~ 180 (279)
+.+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++.++.+|+.++ . ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45678999999999999999999988789999999 888876543 127899999998762 2 2599998
Q ss_pred hhccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 181 ILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 181 vlh~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
|++++. +...+|+++.++|+ |||++++. ..........+. . ....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~-~~~~~~~~~~~~---------~--------~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLK---KGGYGMIA-IKARSIDVTKDP---------K--------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEE---EEEEEEEE-EEGGGTCSSSCH---------H--------HHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCC---CCcEEEEE-EecCCCCCCCCH---------H--------HhhHHHHH-HHHHCC
Confidence 454443 34567999999999 79999887 221111111000 0 00236777 899999
Q ss_pred CceeEEEecCCc---eeEEEEe
Q 023625 260 FSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 260 f~~~~~~~~~~~---~~~i~~~ 278 (279)
|+.+++.++... ..++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999998887654 5555554
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=114.11 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=101.6
Q ss_pred CCCCEEEEecCCc--cHHHHHH-HHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCC---------Ccc
Q 023625 112 EGLKSLVDVAGGT--GIMARAI-ATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAI---------PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~---------~~~ 173 (279)
.+..+|||||||+ +.++.++ .+..|+++++++|. |.+++.|+.. ..+++|+.+|+.++. ..+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3567999999997 3344444 45689999999999 9999998851 247999999998731 125
Q ss_pred c-----eeeehhhhccCChhH-HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 174 N-----AVLLKWILHNWNDEE-SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 174 D-----~v~~~~vlh~~~~~~-~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
| ++++..+||++++++ ...+|++++++|+ |||.|++.+...+.. +. ......+.+-........|+
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~---PGG~Lvls~~~~d~~----p~-~~~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP---SGSYLAMSIGTAEFA----PQ-EVGRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC---TTCEEEEEEECCTTS----HH-HHHHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC---CCcEEEEEeccCCCC----HH-HHHHHHHHHHhcCCCCccCC
Confidence 5 588899999999976 5789999999999 799999888664421 11 01111121111112345689
Q ss_pred HHHHHHHHHHCCCceeE
Q 023625 248 VDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~ 264 (279)
.+|+.++|. ||++++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999995 998654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=110.98 Aligned_cols=143 Identities=11% Similarity=0.012 Sum_probs=94.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh----ccc-----CCCCeEEeeCCCCC-CCC-ccceee-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN----LQG-----TNDNLDFLGGNMFE-AIP-QANAVL- 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-----~~~ri~~~~~d~~~-~~~-~~D~v~- 177 (279)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++. +++ ..++++++.+|+.+ +.+ +.|.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999999 776664 221 23589999999987 544 225554
Q ss_pred --ehhhhc--cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 178 --LKWILH--NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 178 --~~~vlh--~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
....+| +.++. ..+|++++++|+ |||++++.-....-.... + . ..++. ........+++..
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~-~--~---~~~~~----~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCR---PGASFLVALNLHAWRPSV-P--E---VGEHP----EPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEE---EEEEEEEEEEGGGBTTBC-G--G---GTTCC----CCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcC---CCcEEEEEeccccccccc-c--c---cccCC----ccchHHHHHHHHH
Confidence 222332 34443 578999999999 799988843221111000 0 0 00000 0011123456888
Q ss_pred HHHHCCCceeEEEec
Q 023625 254 LFLAAGFSHYKITPM 268 (279)
Q Consensus 254 ll~~aGf~~~~~~~~ 268 (279)
+++++||++.++..+
T Consensus 170 ~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 170 RYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCCceeeecc
Confidence 999999999887654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-13 Score=111.02 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=105.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCC--Cccceeeeh----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAI--PQANAVLLK---- 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~--~~~D~v~~~---- 179 (279)
.+..+|||+|||+|..+..+++.+|..+++++|+ +.+++.+++. ..+++++.+|+.++. ..||+|++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 8888887741 247999999998854 359999997
Q ss_pred ---------hhhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 180 ---------WILHNWND----------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 180 ---------~vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
.++++.+. +....+++++.+.|+ |||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk---pgG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV---SGGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE---EEEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC---CCCEEEEEEC-------------------------
Confidence 34443331 345789999999999 7998877410
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEe-cCCceeEEEEe
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITP-MLGVRSLIEAY 278 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 278 (279)
..+.+++.++++++||+.+++.. ..+...++.++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 01467899999999999877754 56777776665
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=112.36 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=91.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHH-hh---ccc-----CCCCeEEeeCCCCC-CCCccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVV-DN---LQG-----TNDNLDFLGGNMFE-AIPQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~---a~~-----~~~ri~~~~~d~~~-~~~~~D~v~~~~ 180 (279)
.+..+|||||||+|.++..++++.|+.+++++|+ ++.+ +. |++ ...+++++.+|..+ +...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4678999999999999999999999999999999 3554 33 353 12579999999876 321245554444
Q ss_pred hhccCChh------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC-CHHHHHH
Q 023625 181 ILHNWNDE------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKER-SVDDWKK 253 (279)
Q Consensus 181 vlh~~~~~------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r-~~~e~~~ 253 (279)
+.+.|+.. +...+|++++++|| |||++++....... ....+. ...+... ....+ ..+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lk---pGG~l~i~~~~~~~-~~~~~~----~~~~~~~----~~~~~~~~~el~~ 170 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAK---KEAHFEFVTTYSDS-YEEAEI----KKRGLPL----LSKAYFLSEQYKA 170 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEE---EEEEEEEEECCCC-----------------------CCHHHHHSHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcC---CCcEEEEEEecccc-chhchh----hhcCCCC----CChhhcchHHHHH
Confidence 43333321 11367999999999 79999985433322 111000 0000000 00011 2235999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
+++++||++.++...+
T Consensus 171 ~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCCeeeeeecC
Confidence 9999999988876554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=105.45 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=91.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC----Cccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI----PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~----~~~D~v~~~ 179 (279)
..+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++ ++.+|..+.. +.||+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 45678999999999999999999999999999999 888888773 23478 8888886532 459999999
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.++|+ ..+++++.++|+ |||++++.+...+ +..++.+++++.|
T Consensus 102 ~~~~~------~~~l~~~~~~L~---~gG~l~~~~~~~~----------------------------~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLP---VGGRLVANAVTVE----------------------------SEQMLWALRKQFG 144 (178)
T ss_dssp C-TTC------TTHHHHHHHTCC---TTCEEEEEECSHH----------------------------HHHHHHHHHHHHC
T ss_pred CcccH------HHHHHHHHHhcC---CCCEEEEEeeccc----------------------------cHHHHHHHHHHcC
Confidence 99875 467999999999 7999987663221 2345667788888
Q ss_pred CceeEE
Q 023625 260 FSHYKI 265 (279)
Q Consensus 260 f~~~~~ 265 (279)
+...++
T Consensus 145 ~~~~~~ 150 (178)
T 3hm2_A 145 GTISSF 150 (178)
T ss_dssp CEEEEE
T ss_pred CeeEEE
Confidence 776554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-14 Score=112.20 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWN 186 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 186 (279)
.+..+|||||||+|.++..+ +. +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++..++|+++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 36789999999999999877 45 8999999 88888887644789999999987 544 499999999999987
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh---hhhcCCeeCCHHHHHHHHHHCC
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM---VSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~r~~~e~~~ll~~aG 259 (279)
+. .++|++++++|+ |||.+++.+..... +. ......... ......+.++.++++++|+ |
T Consensus 110 ~~--~~~l~~~~~~L~---pgG~l~i~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 110 DV--ERVLLEARRVLR---PGGALVVGVLEALS-----PW--AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CH--HHHHHHHHHHEE---EEEEEEEEEECTTS-----HH--HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred CH--HHHHHHHHHHcC---CCCEEEEEecCCcC-----cH--HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 64 589999999999 79999988754321 11 000000000 0001234569999999999 7
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-13 Score=123.69 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=86.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----------CCCCeEEeeCCCCC-CCC--ccce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----------TNDNLDFLGGNMFE-AIP--QANA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~-~~~--~~D~ 175 (279)
.+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ...+++++.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999998 5679999999 888988864 22579999999987 443 5999
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|++..++|++++++...+++++.++|+ || .+++...
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLK---PG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFH---PK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTC---CS-EEEEEEC
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcC---CC-EEEEEec
Confidence 999999999999988899999999999 67 6666554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-14 Score=112.85 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCC--C-----Cccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEA--I-----PQANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~--~-----~~~D~v~~~ 179 (279)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ..+++++.+|+.++ . ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 8888888753 12788999998763 2 459999995
Q ss_pred hh------hccCChhHH------------------HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch
Q 023625 180 WI------LHNWNDEES------------------VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI 235 (279)
Q Consensus 180 ~v------lh~~~~~~~------------------~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~ 235 (279)
-. ++.++++.. ..+++++.++|+ |||++++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA---RGRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBC---SSSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc---CCCeEEEEEECC------------------
Confidence 33 333333222 688999999999 799966655311
Q ss_pred hhhhhcCCeeCCHHHHHHHHH--HCCCceeEEEec-CCceeEEEEe
Q 023625 236 LMVSLFRGKERSVDDWKKLFL--AAGFSHYKITPM-LGVRSLIEAY 278 (279)
Q Consensus 236 ~~~~~~~~~~r~~~e~~~ll~--~aGf~~~~~~~~-~~~~~~i~~~ 278 (279)
...+++.++++ ++||..+++... .+...++.++
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 13567788889 899988777654 4444555443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=109.79 Aligned_cols=100 Identities=10% Similarity=0.236 Sum_probs=84.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC-ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP-QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~ 184 (279)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456799999999999999999885 58999999 8888888752 2589999999988 322 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 185 WND-EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 185 ~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+++ ++..++|++++++|+ |||.+++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~---pgG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLA---PGGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEE---EEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCEEEEEec
Confidence 986 566789999999999 7999988664
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=112.22 Aligned_cols=97 Identities=16% Similarity=0.282 Sum_probs=81.7
Q ss_pred CCCEEEEecCCccH----HHHHHHHHCC----CCeEEEeeC-hhHHhhcccC--------------------------C-
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAFP----DIKCTVFDL-PHVVDNLQGT--------------------------N- 156 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~--------------------------~- 156 (279)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6666777655 468999999 9999888742 0
Q ss_pred ---------CCeEEeeCCCCC-CCC---ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 157 ---------DNLDFLGGNMFE-AIP---QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 157 ---------~ri~~~~~d~~~-~~~---~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.+|.|..+|+.+ +.+ .||+|+++++|++++++...+++++++++|+ |||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~---pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK---PDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE---EEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC---CCcEEEE
Confidence 269999999998 454 5999999999999999888999999999999 7998876
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=105.09 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=94.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH----HhhcccCCCCeEEeeCCCCCC-----CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV----VDNLQGTNDNLDFLGGNMFEA-----IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~d~~~~-----~~-~~D~v~~~ 179 (279)
..++.+|||||||+|.++..+++..+..+++++|+ +.+ .+.++.. .++.++.+|...+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45678999999999999999999988779999999 654 3444444 5788998988753 22 59999986
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH----HHHH
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW----KKLF 255 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~----~~ll 255 (279)
+.+ +++...+|++++++|+ |||++++.-...+... ..+.+++ .+.+
T Consensus 134 -~~~---~~~~~~~l~~~~r~Lk---pgG~l~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~l 183 (210)
T 1nt2_A 134 -IAQ---KNQIEILKANAEFFLK---EKGEVVIMVKARSIDS-----------------------TAEPEEVFKSVLKEM 183 (210)
T ss_dssp -CCS---TTHHHHHHHHHHHHEE---EEEEEEEEEEHHHHCT-----------------------TSCHHHHHHHHHHHH
T ss_pred -ccC---hhHHHHHHHHHHHHhC---CCCEEEEEEecCCccc-----------------------cCCHHHHHHHHHHHH
Confidence 222 2344566999999999 7999998732211000 0022232 1237
Q ss_pred HHCCCceeEEEecCC---ceeEEEEeC
Q 023625 256 LAAGFSHYKITPMLG---VRSLIEAYP 279 (279)
Q Consensus 256 ~~aGf~~~~~~~~~~---~~~~i~~~~ 279 (279)
+++ |++.+.....+ .+.++.+++
T Consensus 184 ~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 184 EGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp HTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred Hhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 888 99999887733 345666653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=118.93 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=90.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------------C-CCCeEEeeCC
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------------T-NDNLDFLGGN 165 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~-~~ri~~~~~d 165 (279)
..+++.+. ..+..+|||||||+|..+..+++..+..+++++|+ +.+++.|+. . .++|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555444 56788999999999999999999887667999999 777766653 1 2689999999
Q ss_pred CCC-CC----CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 023625 166 MFE-AI----PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221 (279)
Q Consensus 166 ~~~-~~----~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~ 221 (279)
+.+ +. ..+|+|++..+++ . ++....|+++.++|+ |||+|++.|.+.++..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLK---PGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMK---EGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSC---TTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCC---CCcEEEEeecccCCCC
Confidence 998 54 3599999877764 2 345677899999999 7999999999887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=103.54 Aligned_cols=140 Identities=12% Similarity=0.287 Sum_probs=103.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCC-CeEEeeCCCCCCCC--
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TND-NLDFLGGNMFEAIP-- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~~~~-- 171 (279)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.++. ... |++++.+|+.++.+
T Consensus 43 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3444443 456789999999999999999998 779999999 888887764 212 59999999988543
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++..++|. ..+....+++++.++|+ |||.+++...... ...++
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~---~gG~l~~~~~~~~----------------------------~~~~~ 166 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLK---DNGEIWVVIQTKQ----------------------------GAKSL 166 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEE---EEEEEEEEEESTH----------------------------HHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcC---CCCEEEEEECCCC----------------------------ChHHH
Confidence 5999999888773 45667899999999999 7999988764311 12356
Q ss_pred HHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 252 KKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
.+.+++. |..+++........++.++
T Consensus 167 ~~~l~~~-~~~~~~~~~~~~~~~~~~~ 192 (194)
T 1dus_A 167 AKYMKDV-FGNVETVTIKGGYRVLKSK 192 (194)
T ss_dssp HHHHHHH-HSCCEEEEEETTEEEEEEE
T ss_pred HHHHHHH-hcceEEEecCCcEEEEEEe
Confidence 7777777 6666666655444555554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-14 Score=117.61 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=91.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC---CCC--ccceeee---
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE---AIP--QANAVLL--- 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~v~~--- 178 (279)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ...++.++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 56789999999999999999987774 7999999 999998874 34678888888643 233 4887764
Q ss_pred --hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHH
Q 023625 179 --KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 179 --~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~ 256 (279)
...++++.+ ...++++++++|| |||++++.+....... ....+.... ....+.+...|.
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLk---PGG~l~f~~~~~~~~~------~~~~~~~~~--------~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLK---PGGVLTYCNLTSWGEL------MKSKYSDIT--------IMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEE---EEEEEEECCHHHHHHH------TTTTCSCHH--------HHHHHHTHHHHH
T ss_pred ecccchhhhcc--hhhhhhhhhheeC---CCCEEEEEecCCchhh------hhhhhhhhh--------hhhHHHHHHHHH
Confidence 445554444 5688999999999 7999887653221100 000000011 012456677889
Q ss_pred HCCCceeEE
Q 023625 257 AAGFSHYKI 265 (279)
Q Consensus 257 ~aGf~~~~~ 265 (279)
++||++..+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999986654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-12 Score=111.83 Aligned_cols=97 Identities=5% Similarity=0.050 Sum_probs=79.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC-----ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP-----QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~-----~~D~v~~~~v 181 (279)
+..+|||+| |+|.++..+++..|..+++++|+ +.+++.|++. ..+++++.+|+.++.+ .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999988889999999 8999888741 1389999999987432 5999999876
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
++.. ....+|+++.++|+ |||++++++..
T Consensus 251 ~~~~---~~~~~l~~~~~~Lk---pgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLK---GPRCAGYFGIT 279 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBC---STTCEEEEEEC
T ss_pred CchH---HHHHHHHHHHHHcc---cCCeEEEEEEe
Confidence 6543 24789999999999 79977666654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=108.70 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=101.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCC--Cccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAI--PQANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~v~~~~vlh 183 (279)
..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..-.+++..+|+.++. ..||+|++....|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999998765 9999999 888888774 1112899999987643 3599999865443
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
....+++++.+.|+ |||++++.+.... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lk---pgG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALV---PGGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEE---EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcC---CCCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 35688999999999 7999988654321 35789999999999999
Q ss_pred EEEecCCceeEE
Q 023625 264 KITPMLGVRSLI 275 (279)
Q Consensus 264 ~~~~~~~~~~~i 275 (279)
++....++.+++
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 998888887764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=107.28 Aligned_cols=139 Identities=6% Similarity=0.097 Sum_probs=95.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhH----HhhcccCCCCeEEeeCCCCCC--C----Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHV----VDNLQGTNDNLDFLGGNMFEA--I----PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~d~~~~--~----~~~D~v~~ 178 (279)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+ ++.++.. .+++++.+|+.++ . ..||+|++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 4567899999999999999999986 7789999999 654 3444444 7899999999872 2 25999998
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC-CCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN-QSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA 257 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~ 257 (279)
... ..+....+++++.++|+ |||.+++. ..... ....++ . .. -..+ .++|++
T Consensus 154 ~~~----~~~~~~~~~~~~~~~Lk---pgG~l~i~-~~~~~~~~~~~~---~------~~---------~~~~-~~~l~~ 206 (233)
T 2ipx_A 154 DVA----QPDQTRIVALNAHTFLR---NGGHFVIS-IKANCIDSTASA---E------AV---------FASE-VKKMQQ 206 (233)
T ss_dssp CCC----CTTHHHHHHHHHHHHEE---EEEEEEEE-EEHHHHCSSSCH---H------HH---------HHHH-HHTTGG
T ss_pred cCC----CccHHHHHHHHHHHHcC---CCeEEEEE-EcccccccCCCH---H------HH---------HHHH-HHHHHH
Confidence 433 33445677999999999 79988883 22110 100000 0 00 1123 588999
Q ss_pred CCCceeEEEecCCc---eeEEEE
Q 023625 258 AGFSHYKITPMLGV---RSLIEA 277 (279)
Q Consensus 258 aGf~~~~~~~~~~~---~~~i~~ 277 (279)
+||+++++..+..+ ..++.+
T Consensus 207 ~Gf~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 207 ENMKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp GTEEEEEEEECTTTSSSEEEEEE
T ss_pred CCCceEEEEecCCccCCcEEEEE
Confidence 99999987766433 444444
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=105.91 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=99.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCCC------Cccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEAI------PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~------~~~D~v~~~ 179 (279)
++++.+|||+|||+|.++..+++. .|+-+++++|. +.+++.+++ ...++..+.+|...+. ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678999999999999999999997 48889999999 888877653 2367888988887631 148888753
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
. ++ + ++...++++++++|| |||+++|+..........++ + ...++-.+.|+++|
T Consensus 155 ~--~~-~-~~~~~~l~~~~r~LK---pGG~lvI~ik~r~~d~~~p~------------------~-~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 V--AQ-P-EQAAIVVRNARFFLR---DGGYMLMAIKARSIDVTTEP------------------S-EVYKREIKTLMDGG 208 (233)
T ss_dssp C--CC-T-THHHHHHHHHHHHEE---EEEEEEEEEECCHHHHHTCC------------------C-HHHHHHHHHHHHTT
T ss_pred c--cC-C-hhHHHHHHHHHHhcc---CCCEEEEEEecccCCCCCCh------------------H-HHHHHHHHHHHHCC
Confidence 2 22 2 245678999999999 79999986532221110000 0 01123456789999
Q ss_pred CceeEEEecCCc---eeEEEEe
Q 023625 260 FSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 260 f~~~~~~~~~~~---~~~i~~~ 278 (279)
|+.++...+.++ +.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 999998887543 5565554
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=102.45 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=91.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---CCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---IPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~~~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|+.+. .+.||+|++..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 456789999999999999999998 779999999 888888774 234899999999872 34699999876
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
.+ + .. +++++.++|+ |||++++...... +..++.+++++.|+
T Consensus 131 ~~----~--~~-~l~~~~~~Lk---pgG~lv~~~~~~~----------------------------~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 131 GG----S--QA-LYDRLWEWLA---PGTRIVANAVTLE----------------------------SETLLTQLHARHGG 172 (204)
T ss_dssp CC----C--HH-HHHHHHHHSC---TTCEEEEEECSHH----------------------------HHHHHHHHHHHHCS
T ss_pred cc----c--HH-HHHHHHHhcC---CCcEEEEEecCcc----------------------------cHHHHHHHHHhCCC
Confidence 44 1 23 8999999999 7999887553210 34577888999998
Q ss_pred ceeEEE
Q 023625 261 SHYKIT 266 (279)
Q Consensus 261 ~~~~~~ 266 (279)
++.++.
T Consensus 173 ~i~~i~ 178 (204)
T 3njr_A 173 QLLRID 178 (204)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 877663
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-13 Score=107.15 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=85.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ..++++..+|+.+ +.+ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999998665 8999999 8888887752 2589999999987 544 599999988887
Q ss_pred cCC-------------hhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 184 NWN-------------DEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 184 ~~~-------------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.+. .++..++|+++.++|+ |||++++.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV---PGGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE---EEEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCc---CCCEEEEEeCC
Confidence 665 4566899999999999 79999998753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=102.66 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=102.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP---QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~v~~~~ 180 (279)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ ..+++++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34668999999999999999999999999999999 888888874 35689999999988654 499998765
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+ .-+-...+|..+.+.|+ |+|++++ .+.. ..+.++++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~---~~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLA---NVERLIL-QPNN-----------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCT---TCCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhC---CCCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence 4 33446789999999999 6887766 3220 34578899999999
Q ss_pred ceeEEEe---cCCceeEEEEe
Q 023625 261 SHYKITP---MLGVRSLIEAY 278 (279)
Q Consensus 261 ~~~~~~~---~~~~~~~i~~~ 278 (279)
.+++..- -..++.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9886642 23456777664
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=111.73 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CC-------CeEEeeCCCCC---------CCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----ND-------NLDFLGGNMFE---------AIP 171 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~-------ri~~~~~d~~~---------~~~ 171 (279)
+..+|||||||+|..+..+++. ...+++++|+ +.+++.|++. .. +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877766664 3468999999 9999988741 11 26787887722 122
Q ss_pred --ccceeeehhhhcc-CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC----------c-hhhh-h-hhh---
Q 023625 172 --QANAVLLKWILHN-WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD----------K-ESME-T-QLC--- 232 (279)
Q Consensus 172 --~~D~v~~~~vlh~-~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~----------~-~~~~-~-~~~--- 232 (279)
.||+|++..++|. +.+++..++|++++++|+ |||.+++........... . +... . ...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk---pGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA---SGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE---EEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 5999999999986 454556799999999999 799998876532110000 0 0000 0 000
Q ss_pred cch--hhhhh---cC--CeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 233 FDI--LMVSL---FR--GKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 233 ~d~--~~~~~---~~--~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.+. .+.-. .. ....+.+++.++++++||++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000 00000 01 12357899999999999999887653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=111.37 Aligned_cols=126 Identities=12% Similarity=0.210 Sum_probs=98.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP-- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-- 171 (279)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++ ..+++++..+|+.+..+
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3444443 567889999999999999999999 88999999999 888888774 34679999999987654
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++ +.++. ..+++++.++|+ |||++++...... ...++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALK---PGGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEE---EEEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcC---CCCEEEEEECCHH----------------------------HHHHH
Confidence 4999997 23443 467999999999 7999988653210 24567
Q ss_pred HHHHHHCC--CceeEEEe
Q 023625 252 KKLFLAAG--FSHYKITP 267 (279)
Q Consensus 252 ~~ll~~aG--f~~~~~~~ 267 (279)
.+++++.| |..+++..
T Consensus 204 ~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHHTGGGBSCCEEEC
T ss_pred HHHHHHcCCCccccEEEE
Confidence 78889999 98877654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=109.57 Aligned_cols=107 Identities=16% Similarity=0.125 Sum_probs=81.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-C-Ce--EEeeCCC--CCC-CCc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-D-NL--DFLGGNM--FEA-IPQ 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~-ri--~~~~~d~--~~~-~~~ 172 (279)
..+++.++ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++.. . .+ .+...+. ... ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 44555554 567789999999999999999987 468999999 88999887521 1 12 2222232 011 135
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
||+|++..++|++++++...+++++.++| | ||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 99999999999999999999999999999 6 899887643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-13 Score=110.10 Aligned_cols=115 Identities=10% Similarity=0.139 Sum_probs=90.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC--CCC---ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE--AIP---QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~---~~D~v~~~~vlh~~ 185 (279)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 579999999 89999888655789999999965 333 599999861
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
+...+|++++++|+ |||+++... ...+.+++.++++++||...++
T Consensus 120 ---~~~~~l~~~~~~Lk---pgG~l~~~~-----------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAA---PDAHFLYVG-----------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEE---EEEEEEEEE-----------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcC---CCcEEEEeC-----------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 23467999999999 799888100 0113457888899999988776
Q ss_pred Eec
Q 023625 266 TPM 268 (279)
Q Consensus 266 ~~~ 268 (279)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=113.30 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=78.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC---CCC--ccceeee-hh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE---AIP--QANAVLL-KW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~v~~-~~ 180 (279)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.|++ ...+++++.+|+.+ +.+ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4578999999999999999976544 48999999 888888774 23679999999865 343 4999998 44
Q ss_pred h--hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 181 I--LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 181 v--lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
. .+.+...+...++++++++|+ |||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lk---pgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLK---PGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEE---EEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcC---CCeEEEEEecC
Confidence 4 444445555688999999999 79999887643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=109.30 Aligned_cols=95 Identities=9% Similarity=0.216 Sum_probs=79.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~vl 182 (279)
..+..+|||||||+|.++..++.+.++++++++|+ +.+++.|++ . ++++|+.+|..+ +...||+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc
Confidence 56789999999999988877777778999999999 999998874 4 799999999987 43469999986542
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ +..++++++.++|+ |||++++.+
T Consensus 199 ---~--d~~~~l~el~r~Lk---PGG~Lvv~~ 222 (298)
T 3fpf_A 199 ---E--PKRRVFRNIHRYVD---TETRIIYRT 222 (298)
T ss_dssp ---S--CHHHHHHHHHHHCC---TTCEEEEEE
T ss_pred ---c--CHHHHHHHHHHHcC---CCcEEEEEc
Confidence 2 34689999999999 799999876
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=111.91 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=94.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCCCC--c
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEAIP--Q 172 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~~~--~ 172 (279)
++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .+++++..+|+.++.+ .
T Consensus 102 ~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 102 IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp ----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 444443 567789999999999999999998 78899999999 8888877641 2589999999988554 4
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
||+|++ ++++. .++|+++.++|+ |||++++...... ..+++.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~Lk---pgG~l~i~~~~~~----------------------------~~~~~~ 221 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMK---PGSVATFYLPNFD----------------------------QSEKTV 221 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEE---EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcC---CCCEEEEEeCCHH----------------------------HHHHHH
Confidence 999998 33443 378999999999 7999998763210 234566
Q ss_pred HHHHHCCCceeEEEe
Q 023625 253 KLFLAAGFSHYKITP 267 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~ 267 (279)
+.++++||+.+++..
T Consensus 222 ~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 222 LSLSASGMHHLETVE 236 (275)
T ss_dssp HHSGGGTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 777888888777654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=107.98 Aligned_cols=121 Identities=18% Similarity=0.251 Sum_probs=93.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CC-----Cccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AI-----PQANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~v~~~ 179 (279)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ...+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4578999999999999999999899999999999 888887764 12469999999865 32 259999987
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.+ . +...+++.+.++|+ |||.+++..... . . ...+++.+.+++.|
T Consensus 149 ~~----~--~~~~~l~~~~~~Lk---pgG~l~~~~g~~-----~----~-----------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVK---KNGLFVALKAAS-----A----E-----------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEE---EEEEEEEEECC------C----H-----------------HHHHHHHHHHHHTT
T ss_pred cc----C--CHHHHHHHHHHhcC---CCCEEEEEeCCC-----c----h-----------------HHHHHHHHHHHHcC
Confidence 63 2 25689999999999 799998753110 0 0 02346778899999
Q ss_pred CceeEEEe
Q 023625 260 FSHYKITP 267 (279)
Q Consensus 260 f~~~~~~~ 267 (279)
|...++..
T Consensus 194 ~~~~~~~~ 201 (240)
T 1xdz_A 194 GELENIHS 201 (240)
T ss_dssp EEEEEEEE
T ss_pred CeEeEEEE
Confidence 99887754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=101.95 Aligned_cols=131 Identities=9% Similarity=-0.003 Sum_probs=102.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC-C--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI-P--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~--~~D~v~~~~ 180 (279)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ ..+++++..+|.++.. + .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999998889999999 888888874 3578999999999854 3 499998765
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+. -+-...+|....+.|+ ++|++++.- .. ..+++++++.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~l~---~~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 MG----GRLIADILNNDIDKLQ---HVKTLVLQP-NN-----------------------------REDDLRKWLAANDF 141 (230)
T ss_dssp EC----HHHHHHHHHHTGGGGT---TCCEEEEEE-SS-----------------------------CHHHHHHHHHHTTE
T ss_pred Cc----hHHHHHHHHHHHHHhC---cCCEEEEEC-CC-----------------------------ChHHHHHHHHHCCC
Confidence 43 3456789999999998 678766532 10 35678999999999
Q ss_pred ceeEEEec---CCceeEEEEe
Q 023625 261 SHYKITPM---LGVRSLIEAY 278 (279)
Q Consensus 261 ~~~~~~~~---~~~~~~i~~~ 278 (279)
.+.+..-+ ..++.+|.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98876532 3466777765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=102.79 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--CC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--IP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~~--~~D~v~~~~v 181 (279)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. .++++++.+|+.+ + .+ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 8888887641 2689999999986 3 33 4999998754
Q ss_pred hccCChh------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+..... ....+|+++.++|+ |||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILP---ENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSC---TTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcC---CCcEEEEEe
Confidence 3211100 12478999999999 799988743
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-14 Score=116.38 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCC----CCCC-----cccee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMF----EAIP-----QANAV 176 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~----~~~~-----~~D~v 176 (279)
+..+|||+|||+|.++..++++.|..+++++|+ +.+++.|++ ..++++++.+|.. ++.+ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999988899999999 889888774 2457999999853 2333 59999
Q ss_pred eehhhhccCCh-------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC
Q 023625 177 LLKWILHNWND-------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG 243 (279)
Q Consensus 177 ~~~~vlh~~~~-------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 243 (279)
++.-..|.... +....++.+++++|+ |||.+.+++.+.... ........+.....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lk---pgG~l~~~~~~~~~~--------~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA---EGGELEFVKRIIHDS--------LQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHH---HHTHHHHHHHHHHHH--------HHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEe---cCCEEEEEHHHHHHH--------HhcccceEEEEECCC
Confidence 99755554331 112356788899999 799888776543210 000000001111113
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3345688999999999998887665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-12 Score=103.30 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=96.3
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCC--CCCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMF--EAIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~--~~~~--~~D~v~~~~ 180 (279)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ...+++++.+|.. .+.+ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999986 678999999 888888874 2238999999963 3443 599999876
Q ss_pred hhccCChh-----------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC
Q 023625 181 ILHNWNDE-----------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG 243 (279)
Q Consensus 181 vlh~~~~~-----------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 243 (279)
..+..++. ....+++++.+.|+ |||+++++-....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN---PGGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEE---EEEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC---CCeEEEEEecccH-------------------------
Confidence 65543332 13689999999999 7999988532100
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEecCCc
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPMLGV 271 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~~~~ 271 (279)
...+++.+++++.||.+..+....+.
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g~ 209 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVGT 209 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCCC
Confidence 03467889999999987776555443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-12 Score=101.22 Aligned_cols=141 Identities=11% Similarity=0.062 Sum_probs=93.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHH----hhcccCCCCeEEeeCCCCCCC------Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVV----DNLQGTNDNLDFLGGNMFEAI------PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~ 178 (279)
+.++.+|||+|||+|.++..+++.. |+.+++++|+ +.++ +.+++. .++.++.+|...+. ..||+|++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchhhhccccceEEEEe
Confidence 5678999999999999999999874 6789999999 7554 344444 68999999987631 25999987
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
.... +++...+++++.+.|+ |||++++........... .-.+ ..++..+.|+++
T Consensus 153 d~a~----~~~~~il~~~~~~~Lk---pGG~lvisik~~~~d~t~------------------~~~e-~~~~~~~~L~~~ 206 (232)
T 3id6_C 153 DIAQ----PDQTDIAIYNAKFFLK---VNGDMLLVIKARSIDVTK------------------DPKE-IYKTEVEKLENS 206 (232)
T ss_dssp CCCC----TTHHHHHHHHHHHHEE---EEEEEEEEEC-------C------------------CSSS-STTHHHHHHHHT
T ss_pred cCCC----hhHHHHHHHHHHHhCC---CCeEEEEEEccCCcccCC------------------CHHH-HHHHHHHHHHHC
Confidence 6432 2233344566667999 799999873221111000 0001 112344677889
Q ss_pred CCceeEEEecCCc---eeEEEEe
Q 023625 259 GFSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 259 Gf~~~~~~~~~~~---~~~i~~~ 278 (279)
||++.+...+.+. +.++.++
T Consensus 207 gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 207 NFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp TEEEEEEEECTTTCSSCEEEEEE
T ss_pred CCEEEEEeccCCCcCceEEEEEE
Confidence 9999999888443 5666554
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=99.80 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=98.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCC-----CC-ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEA-----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~-----~~-~~D~v~~ 178 (279)
..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.++ .. ++++++.+|+.++ .+ .||+|++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEE
Confidence 4567899999999999999999885 6689999999 76555443 34 7899999999862 23 5999996
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
... .++....+++++.++|+ |||.+++. ..........+ . .....+++..+ +++
T Consensus 150 ~~~----~~~~~~~~l~~~~~~Lk---pgG~l~~~-~~~~~~~~~~~---------~--------~~~~~~~l~~l-~~~ 203 (227)
T 1g8a_A 150 DVA----QPTQAKILIDNAEVYLK---RGGYGMIA-VKSRSIDVTKE---------P--------EQVFREVEREL-SEY 203 (227)
T ss_dssp CCC----STTHHHHHHHHHHHHEE---EEEEEEEE-EEGGGTCTTSC---------H--------HHHHHHHHHHH-HTT
T ss_pred CCC----CHhHHHHHHHHHHHhcC---CCCEEEEE-EecCCCCCCCC---------h--------hhhhHHHHHHH-Hhh
Confidence 543 23334456999999999 79999887 22211111100 0 01145677777 777
Q ss_pred CCceeEEEecCCc---eeEEEEeC
Q 023625 259 GFSHYKITPMLGV---RSLIEAYP 279 (279)
Q Consensus 259 Gf~~~~~~~~~~~---~~~i~~~~ 279 (279)
|++++...+... ..++.+++
T Consensus 204 -f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 -FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp -SEEEEEEECTTTSSSEEEEEEEC
T ss_pred -ceeeeEeccCcccCCCEEEEEEe
Confidence 999988887544 55565553
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=102.82 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=81.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCC-C-C-C-ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFE-A-I-P-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~-~-~-~~D~v~~ 178 (279)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++. .++++++.+|+.+ + . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999999 8888888742 3689999999865 2 2 2 5999998
Q ss_pred hhhhc-------cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 179 KWILH-------NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh-------~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
...+. ....++..++++++.++|+ |||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLV---TGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEE---EEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCc---CCCEEEEEEcc
Confidence 76441 1123355679999999999 79999987643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=109.76 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=94.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC-C----CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE-A----IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~-~----~~~~D~v 176 (279)
+...+|||||||+|.++..+++..+..+++++|+ +.+++.+++. .+|++++.+|..+ . ...||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999999 8888877641 3689999999875 2 2259999
Q ss_pred eehhhhccCChhHH--HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 177 LLKWILHNWNDEES--VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 177 ~~~~vlh~~~~~~~--~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
++....+..++... .+++++++++|+ |||.+++.... + +.+ .....++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~~~~--------~------~~~----------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILK---PDGICCNQGES--------I------WLD----------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEE---EEEEEEEEECC--------T------TTC----------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcC---CCcEEEEecCC--------c------ccc----------hHHHHHHHHH
Confidence 99766665444322 588999999999 79988876321 0 000 1145678899
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-12 Score=99.06 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=77.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~v 181 (279)
+++..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ...++++ .|..+ +.+ .||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 46688999999999999999999999999999999 999988874 2225555 66655 333 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+|.+ ++ ....+.++.++|+ |||.++-.+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~---pggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFH---TQNFVISFP 152 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCE---EEEEEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhC---CCCEEEEeC
Confidence 9999 43 3455669999999 677655554
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=108.23 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=82.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCC-C----C--C
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFE-A----I--P 171 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~-~----~--~ 171 (279)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999999884 6779999999 888887763 12378999999976 3 3 2
Q ss_pred --ccceeeehhhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 172 --QANAVLLKWILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 172 --~~D~v~~~~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.||+|++..++|.. +.++...+|++++++|+ |||.+++...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk---pgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLS---PGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE---EEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC---CCcEEEEecC
Confidence 59999999999976 44667899999999999 7999888765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=100.80 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=76.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C-C-C-ccceeeeh-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A-I-P-QANAVLLK- 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~-~-~-~~D~v~~~- 179 (279)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++. .++++++..|... + . + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 789999999 8899888741 2789999977654 1 2 3 49999876
Q ss_pred hhhcc------CChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 WILHN------WNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 ~vlh~------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..++. ...++...+|+++.++|+ |||+++++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLE---VGGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEE---EEEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcC---CCcEEEEEEe
Confidence 23321 023556788999999999 7999988764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-12 Score=99.34 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=90.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC--C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA--I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~-~~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++..+|+.++ . +.||+|++..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence 4567899999999999999999987 78999999 888887764 126899999998662 2 4699999988
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|+ ...+++++.++|+ |||.+++...... +..++.+++++.||
T Consensus 109 ~~~~-----~~~~l~~~~~~l~---~gG~l~~~~~~~~----------------------------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 109 SGGE-----LQEILRIIKDKLK---PGGRIIVTAILLE----------------------------TKFEAMECLRDLGF 152 (192)
T ss_dssp CTTC-----HHHHHHHHHHTEE---EEEEEEEEECBHH----------------------------HHHHHHHHHHHTTC
T ss_pred chHH-----HHHHHHHHHHhcC---CCcEEEEEecCcc----------------------------hHHHHHHHHHHCCC
Confidence 7753 3678999999999 7999888653210 34578889999999
Q ss_pred ce
Q 023625 261 SH 262 (279)
Q Consensus 261 ~~ 262 (279)
.+
T Consensus 153 ~~ 154 (192)
T 1l3i_A 153 DV 154 (192)
T ss_dssp CC
T ss_pred ce
Confidence 43
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=103.06 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC--Cccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI--PQANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~--~~~D~v~~~~vlh~ 184 (279)
+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++. ...++++..+|+.+.. ..||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 467999999999999999999999999999999 888887764 1235999999998733 35999997542 2
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
....+++++.++|+ |||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~---~gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPG---EQGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEE---EEEEEEEE
T ss_pred ----CHHHHHHHHHHhcC---CCcEEEEE
Confidence 24588999999999 79988886
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=107.79 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CC-----Cccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AI-----PQANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~v~~~ 179 (279)
.+..+|||||||+|..+..++..+|+.+++++|+ +.+++.+++ .-.+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 3568999999999999999999999999999999 888887774 12469999999876 32 359999987
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.+- + ...+++.+.+.|+ |||++++....... . ...++...+++.|
T Consensus 159 a~~----~--~~~ll~~~~~~Lk---pgG~l~~~~g~~~~---~-----------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLE---VGGAAVAMKGPRVE---E-----------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEE---EEEEEEEEECSCCH---H-----------------------HHTTHHHHHHHHT
T ss_pred CcC----C--HHHHHHHHHHHcC---CCeEEEEEeCCCcH---H-----------------------HHHHHHHHHHHcC
Confidence 542 2 3578999999999 79998876522110 0 1235667788889
Q ss_pred CceeEEEec
Q 023625 260 FSHYKITPM 268 (279)
Q Consensus 260 f~~~~~~~~ 268 (279)
|.+.++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998887654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=102.80 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=94.6
Q ss_pred hC-CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C--C--Cccceee
Q 023625 111 FE-GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A--I--PQANAVL 177 (279)
Q Consensus 111 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~--~~~D~v~ 177 (279)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|++ ..++++++.+|+.+ + . ..||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999999776 9999999 888888774 34689999999987 2 2 2599999
Q ss_pred ehhhhccC------------------ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 178 LKWILHNW------------------NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 178 ~~~vlh~~------------------~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
+.-.++.. .......+++.+.++|+ |||+++++- +..
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~---~~~------------------- 179 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK---QGGKANFVH---RPE------------------- 179 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEE---EEEEEEEEE---CTT-------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc---CCcEEEEEE---cHH-------------------
Confidence 95333211 11334679999999999 799998842 110
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...++..++++.||...++..+
T Consensus 180 -------~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -------RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------THHHHHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCceEEEEEe
Confidence 3457888899999988877654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=112.54 Aligned_cols=110 Identities=16% Similarity=0.314 Sum_probs=88.8
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC-ccc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP-QAN 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D 174 (279)
..+++.++ .....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ....++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44555553 23467999999999999999999999999999999 888887774 23357789999987433 699
Q ss_pred eeeehhhhcc---CChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 175 AVLLKWILHN---WNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 175 ~v~~~~vlh~---~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|++..++|. +..+...+++++++++|+ |||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLN---SGGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEE---EEEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCC---CCcEEEEEEc
Confidence 9999999986 345667899999999999 7999998764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=106.75 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=81.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C---Ccccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I---PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~---~~~D~v 176 (279)
..+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.|++ ..++++++.+|..+ + . ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 789999999 888888774 34689999999865 2 2 259999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
++.. +......+++++.++|+ |||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lk---pGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSR---PGTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCC---TTCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcC---CCeEEEEeCCCcC
Confidence 9844 34456789999999999 7998887665543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=99.75 Aligned_cols=131 Identities=8% Similarity=0.038 Sum_probs=101.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP---QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~v~~~~ 180 (279)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ ..+++++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35678999999999999999999998889999999 888888874 35789999999998543 399998765
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+ .-+-...+|....+.|+ +++++++.-. . ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~---~~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLA---GVTKLILQPN-I-----------------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGT---TCCEEEEEES-S-----------------------------CHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhC---CCCEEEEEcC-C-----------------------------ChHHHHHHHHHCCC
Confidence 4 33456789999999998 6777766321 0 34578899999999
Q ss_pred ceeEEEe---cCCceeEEEEe
Q 023625 261 SHYKITP---MLGVRSLIEAY 278 (279)
Q Consensus 261 ~~~~~~~---~~~~~~~i~~~ 278 (279)
.+++-.- -.-++.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9865442 33456666654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=113.23 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=86.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-Q 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~ 172 (279)
..+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+.++++.|++ ..++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 44555554 44568999999999999998887 57789999999557776663 34789999999988 555 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
||+|++..++|++.+++....+.++++.|+ |||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk---pgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLK---PSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEE---EEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcC---CCCEEEE
Confidence 999999888888887778888999999999 7998874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-12 Score=110.06 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=85.5
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------C--CCeEEeeCCCCCCCC-
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------N--DNLDFLGGNMFEAIP- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~ri~~~~~d~~~~~~- 171 (279)
.+++.++ ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. . .+++|..+|+.++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3455554 33458999999999999999999999999999999 8888887741 1 258889999998655
Q ss_pred -ccceeeehhhhcc---CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILHN---WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh~---~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++.-.+|. ..+....++++++.+.|+ |||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK---INGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC---CCcEEEEEE
Confidence 5999999888874 345556689999999999 799999864
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=99.43 Aligned_cols=98 Identities=20% Similarity=0.320 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~v~~~~v 181 (279)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 467999999999999999999999999999999 888887764 12579999999876 3 33 4898876433
Q ss_pred hccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. |... ....+|+++.++|+ |||.+++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lk---pgG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMG---KGGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHT---TSCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcC---CCCEEEEEe
Confidence 21 2111 02578999999999 799988754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-12 Score=104.09 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=78.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
++..+|||||||+|.++..+++. ..+++++|+ +.+++.+++.... .++.+|+.+ +.+ .||+|++..+++++.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 36789999999999999999987 568999999 8888888753222 388899877 544 5999999886655543
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+ ...+|++++++|+ |||++++....
T Consensus 130 ~-~~~~l~~~~~~Lk---pgG~l~~~~~~ 154 (260)
T 2avn_A 130 N-KDKAFSEIRRVLV---PDGLLIATVDN 154 (260)
T ss_dssp C-HHHHHHHHHHHEE---EEEEEEEEEEB
T ss_pred c-HHHHHHHHHHHcC---CCeEEEEEeCC
Confidence 3 6789999999999 79999887653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=102.67 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=96.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCC-CC-
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEA-IP- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~-~~- 171 (279)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. .+++++..+|+.+. .+
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 3555444 567889999999999999999998 67899999999 8888877642 36899999999873 54
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHH
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDD 250 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e 250 (279)
.||+|++ ++++. ..+|+++.++|+ |||++++...... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALK---PDRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEE---EEEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCC---CCCEEEEEeCCHH----------------------------HHHH
Confidence 4999997 23443 377999999999 7999998763210 1245
Q ss_pred HHHHHHHCCCceeEEEe
Q 023625 251 WKKLFLAAGFSHYKITP 267 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~ 267 (279)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 66777888998776654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=108.34 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=85.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhc-------cc----C---CCCeEEeeCCC
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNL-------QG----T---NDNLDFLGGNM 166 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~----~---~~ri~~~~~d~ 166 (279)
.+++.+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.| +. . ..+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3444443 56778999999999999999999888778999999 7777766 42 1 26899998754
Q ss_pred C-CC------CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 167 F-EA------IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 167 ~-~~------~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+ .+ ...||+|++..+++ . ++....|+++.+.|+ |||++++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LK---pGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAK---VGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCC---TTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCC---CCeEEEEeeccCCcc
Confidence 4 32 23599999877763 2 345678999999999 799999998776654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=100.33 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=78.4
Q ss_pred CCCEEEEecCCccHHHHHHHHH----CCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--C---C--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATA----FPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--I---P--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~---~--~~D~v~~~~ 180 (279)
+..+|||||||+|..+..+++. .|..+++++|+ +.+++.|+...++++++.+|..+. . . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999998 78899999999 888888876557999999999762 1 2 499998755
Q ss_pred hhccCChhHHHHHHHHHHH-hCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKE-AIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~-~L~~~~pgG~lli~e~ 215 (279)
. |. +...+|+++.+ .|+ |||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lk---pGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLE---EGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCC---TTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCC---CCCEEEEEeC
Confidence 4 52 35678999997 999 7999988664
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=101.22 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=94.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-CC-ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-IP-QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-~~-~~D~v~~~~v 181 (279)
..+..+|||+|||+|.++..+++..+. +++++|+ +.+++.|++ ..++++++.+|..+. .. .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 356789999999999999999999876 8999999 888888763 345799999999883 33 5999988433
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
.....+++++.++|+ |||.+++.+....... .....+++.+.++++||+
T Consensus 202 ------~~~~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 ------VRTHEFIPKALSIAK---DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp ------SSGGGGHHHHHHHEE---EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred ------hhHHHHHHHHHHHCC---CCeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCe
Confidence 223578999999999 7999998876532110 011457888999999998
Q ss_pred eeE
Q 023625 262 HYK 264 (279)
Q Consensus 262 ~~~ 264 (279)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=101.61 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC---
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP--- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~--- 171 (279)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. ..++++..+|+..+.+
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 44555444 56678999999999999999999988 89999998 8888887641 2469999999854543
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.||+|++..+++++.+ ++.+.|+ |||++++.-.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~---pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLK---IGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEE---EEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcC---CCcEEEEEEe
Confidence 3999999999987765 5678899 7998888553
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.2e-12 Score=102.01 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=80.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C-----Cccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I-----PQAN 174 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-----~~~D 174 (279)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|..+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999999 888887763 346899999998652 1 3499
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
+|++... .+....+++++.+.|+ |||.+++.+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~---pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSR---PGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCC---TTCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcC---CCcEEEEeCCCcC
Confidence 9987543 3455689999999999 7997777665543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=106.99 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=85.2
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-cc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-QA 173 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~ 173 (279)
.+.+.+. ..+..+|||||||+|.++..++++ +..+++++|..++++.+++ ..++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 3444443 446789999999999999998886 5669999999557666653 34789999999987 555 59
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|+|++..+++++..+.....+.++++.|+ |||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLK---PSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEE---EEEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcC---CCeEEEEe
Confidence 99999988888887777888999999999 79988743
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=101.63 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=90.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee-CCCCC----CCC--ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG-GNMFE----AIP--QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-~d~~~----~~~--~~D~v~~~~vlh~ 184 (279)
...+|||||||||.++..+++. +..+++++|+ +.+++.+.....|+.... .|+.. ..+ .||++++..++|.
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 4679999999999999998886 4568999999 888877443335654433 33321 123 3899998777774
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+ ..+|.+++++|+ |||+++++- -|.-..... ........|.. -..+..+++.++++++||++.
T Consensus 164 l-----~~vL~e~~rvLk---pGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~------~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 164 L-----NLILPALAKILV---DGGQVVALV--KPQFEAGREQIGKNGIVRESS------IHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp G-----GGTHHHHHHHSC---TTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH------HHHHHHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHcC---cCCEEEEEE--CcccccChhhcCCCCccCCHH------HHHHHHHHHHHHHHHCCCEEE
Confidence 4 468999999999 799998862 111111100 00000000110 012267889999999999988
Q ss_pred EEEec
Q 023625 264 KITPM 268 (279)
Q Consensus 264 ~~~~~ 268 (279)
.+...
T Consensus 228 ~~~~s 232 (291)
T 3hp7_A 228 GLDFS 232 (291)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=95.02 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=88.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~--~~D~v~~~~vl 182 (279)
..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++. .++++++.+|+.++.+ .||+|++..+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-
Confidence 45678999999999999999998 7889999999 8888887741 2589999999877443 5999999877
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
.+...+++++.++ + ||.+++...... +..++.+++++.||.+
T Consensus 110 -----~~~~~~l~~~~~~-~----gG~l~~~~~~~~----------------------------~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 110 -----KNIEKIIEILDKK-K----INHIVANTIVLE----------------------------NAAKIINEFESRGYNV 151 (183)
T ss_dssp -----SCHHHHHHHHHHT-T----CCEEEEEESCHH----------------------------HHHHHHHHHHHTTCEE
T ss_pred -----ccHHHHHHHHhhC-C----CCEEEEEecccc----------------------------cHHHHHHHHHHcCCeE
Confidence 2346788888888 4 898888663110 2456788999999876
Q ss_pred eEE
Q 023625 263 YKI 265 (279)
Q Consensus 263 ~~~ 265 (279)
..+
T Consensus 152 ~~~ 154 (183)
T 2yxd_A 152 DAV 154 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=103.43 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=95.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCCCC--
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEAIP-- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~~~-- 171 (279)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .+++++..+|+.+..+
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 3444444 567789999999999999999999 67899999999 8888887741 2589999999987543
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++. .++. ..+|+++.++|+ |||++++...... ...++
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~---pgG~l~~~~~~~~----------------------------~~~~~ 222 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALK---GGGRFATVCPTTN----------------------------QVQET 222 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEE---EEEEEEEEESSHH----------------------------HHHHH
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcC---CCCEEEEEeCCHH----------------------------HHHHH
Confidence 59999982 3333 478999999999 7999988763210 13456
Q ss_pred HHHHHHCCCceeEEEe
Q 023625 252 KKLFLAAGFSHYKITP 267 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~ 267 (279)
.+.++++||..+++..
T Consensus 223 ~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 223 LKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHSSEEEEEEEC
T ss_pred HHHHHHCCCceeEEEE
Confidence 6777888888776643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=100.58 Aligned_cols=100 Identities=14% Similarity=0.270 Sum_probs=80.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC-----Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI-----PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-----~~~D~v~~ 178 (279)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|++ ..++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999999 888888874 2368999999997732 35999997
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
... .+....+++++.+.|+ |||.+++.+..+.
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lk---pgG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLK---HQGLVITDNVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEE---EEEEEEEECTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcC---CCeEEEEeeCCcC
Confidence 532 3345679999999999 7998877554443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=96.27 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=85.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCC-CC---C--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFE-AI---P--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~---~--~~D~v~~~~vl 182 (279)
..++.+|||||||. +.+|. +.+++.|++. ..+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23888 8888888753 3469999999976 43 3 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 183 HNW-NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 183 h~~-~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
|++ ++. .++|++++++|+ |||++++.+........ ....++.++|.++++++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lk---pgG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILR---PGGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEE---EEEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCC---CCEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC
Confidence 998 554 689999999999 79999996654322110 1123578999999999999
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=98.28 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCC---------------CCeEEeeCCCCCC-----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTN---------------DNLDFLGGNMFEA----- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~---------------~ri~~~~~d~~~~----- 169 (279)
.+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++... +++++...|..+.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888863 348999998 57776655311 3788886654431
Q ss_pred ----CCccceeeehhhhccCChhHHHHHHHHHHHhCC---CCCCCcEEEEE
Q 023625 170 ----IPQANAVLLKWILHNWNDEESVKLLKKCKEAIP---SKDEGGKVIII 213 (279)
Q Consensus 170 ----~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~---~~~pgG~lli~ 213 (279)
...||+|++..++|+.+ +...+++.+.++|+ |+ |||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~-~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPAND-PTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTC-TTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCC-CCCEEEEE
Confidence 13599999999998644 45688999999998 53 48887764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=99.05 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=83.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeE--------Eee-CCCCCCCC---ccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLD--------FLG-GNMFEAIP---QANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~--------~~~-~d~~~~~~---~~D~v~~~ 179 (279)
...+|||||||+|.++..+++. ...+++++|+ +.+++.+++...++. +.. .|+..+.+ .+|++++.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4569999999999999999987 3348999999 888887665334433 222 23322212 25665543
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
. .++|++++++|+ |||+++++. .+....... ........+... ...+.+++.++++++
T Consensus 116 l----------~~~l~~i~rvLk---pgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~------~~~~~~~l~~~l~~a 174 (232)
T 3opn_A 116 L----------DLILPPLYEILE---KNGEVAALI--KPQFEAGREQVGKNGIIRDPKV------HQMTIEKVLKTATQL 174 (232)
T ss_dssp G----------GGTHHHHHHHSC---TTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHH------HHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHhcc---CCCEEEEEE--CcccccCHHHhCcCCeecCcch------hHHHHHHHHHHHHHC
Confidence 2 468999999999 799998852 110000000 000000001110 112778999999999
Q ss_pred CCceeEEEec
Q 023625 259 GFSHYKITPM 268 (279)
Q Consensus 259 Gf~~~~~~~~ 268 (279)
||++..+...
T Consensus 175 Gf~v~~~~~~ 184 (232)
T 3opn_A 175 GFSVKGLTFS 184 (232)
T ss_dssp TEEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 9998888654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=92.48 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--C--Cccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--I--PQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~--~~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. .++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 45689999999999999988874 5568999999 8888888741 2689999999876 2 2 3599999987
Q ss_pred hhccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 181 ILHNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
.+|. ..++..++++++.+ +|+ |||.+++....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~---pgG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTR---EGTVAVVERAT 155 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCC---TTCEEEEEEET
T ss_pred CCCc-chhhHHHHHHHHHhcCccC---CCeEEEEEecC
Confidence 7653 34567889999999 999 79988886544
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=99.20 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC----CC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA----IP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~v~~~~ 180 (279)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|..+. .+ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999999 888887763 135799999997651 33 599998864
Q ss_pred hhccCChh-HH------HHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDE-ES------VKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~-~~------~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
... |+.. .. ..++++++++|+ |||.+++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lk---pGG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQ---LGGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEE---EEEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcC---CCcEEEEEe
Confidence 332 2221 11 258999999999 799988765
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=103.83 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=77.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||||||+|.++..++++ +..+++++|+.++++.|++ ..++++++.+|+.+ +.+ .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345789999999999999999987 6679999999667777663 34679999999988 555 5999998765
Q ss_pred hccC-ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 182 LHNW-NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 182 lh~~-~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+.+ ..+....+|+.+.++|+ |||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lk---pgG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLA---PDGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEE---EEEEEE
T ss_pred cccccCchhHHHHHHHHHHhCC---CCCEEc
Confidence 4443 23445688999999999 799876
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=100.92 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=80.5
Q ss_pred CCCEEEEecCCccHHHHHHHHH--CCCCeEEEeeC-hhHHhhcccC--CC-------C----------------------
Q 023625 113 GLKSLVDVAGGTGIMARAIATA--FPDIKCTVFDL-PHVVDNLQGT--ND-------N---------------------- 158 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~--~~-------r---------------------- 158 (279)
+..+|||+|||+|.++..+++. .+..+++++|+ +.+++.|+.. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999998 78889999999 8888888731 11 2
Q ss_pred ---eE-------------EeeCCCCCCC------C--ccceeeehhhhccCCh-------hHHHHHHHHHHHhCCCCCCC
Q 023625 159 ---LD-------------FLGGNMFEAI------P--QANAVLLKWILHNWND-------EESVKLLKKCKEAIPSKDEG 207 (279)
Q Consensus 159 ---i~-------------~~~~d~~~~~------~--~~D~v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pg 207 (279)
++ +..+|++++. + .||+|++...++...+ +....+++++.++|+ ||
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pg 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP---AH 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC---TT
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC---CC
Confidence 67 9999998843 3 5999999766554432 566799999999999 79
Q ss_pred cEEEEEee
Q 023625 208 GKVIIIDM 215 (279)
Q Consensus 208 G~lli~e~ 215 (279)
|.++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99998544
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=99.25 Aligned_cols=95 Identities=18% Similarity=0.299 Sum_probs=75.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC-cc---ceeeeh--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP-QA---NAVLLK-- 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~---D~v~~~-- 179 (279)
+..+|||+|||+|.++..+++. |..+++++|+ +.+++.|++ ..++++|+.+|++++.+ .| |+|++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 5679999999999999999999 9999999999 889888774 23579999999998544 58 999985
Q ss_pred ----------hhhccCCh------hHHHHHHHHHH-HhCCCCCCCcEEEE
Q 023625 180 ----------WILHNWND------EESVKLLKKCK-EAIPSKDEGGKVII 212 (279)
Q Consensus 180 ----------~vlh~~~~------~~~~~~L~~~~-~~L~~~~pgG~lli 212 (279)
.+.| .+. ++...+++++. +.++ |||.+++
T Consensus 202 yi~~~~~l~~~v~~-ep~~al~~~~dgl~~~~~i~~~~l~---pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVLF-EPPEALFGGEDGLDFYREFFGRYDT---SGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCCC-SCHHHHBCTTTSCHHHHHHHHHCCC---TTCEEEE
T ss_pred CCCcccccChhhcc-CcHHHhcCCCcHHHHHHHHHHhcCC---CCCEEEE
Confidence 2221 111 12237899999 9999 7998876
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=97.65 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=99.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCC-C-ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAI-P-QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~-~-~~D~v~~~~vlh~ 184 (279)
.+..+|||||||.|-++..+....|..+++++|+ +.+++.++. ...+.++...|+..+. + .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888888774 3456899999998843 3 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEee--ecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDM--AIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
+.+++....+ ++.++|+ |+|.++-.+. +..... . |. ..-.+.|++.+.+.|..+
T Consensus 211 Le~q~kg~g~-~ll~aL~---~~~vvVSfp~ksl~Grs~-g-------------m~------~~Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVN---SPNIVVTFPTKSLGQRSK-G-------------MF------QNYSQSFESQARERSCRI 266 (281)
T ss_dssp HHHHSTTHHH-HHHHHSS---CSEEEEEEECC--------C-------------HH------HHHHHHHHHHHHHHTCCE
T ss_pred hhhhhhHHHH-HHHHHhC---CCCEEEeccchhhcCCCc-c-------------hh------hHHHHHHHHHHHhcCCce
Confidence 9888766777 8999999 5765555443 111111 0 00 113568899999999844
Q ss_pred eEEEecCC
Q 023625 263 YKITPMLG 270 (279)
Q Consensus 263 ~~~~~~~~ 270 (279)
. ...+++
T Consensus 267 ~-~~~~~n 273 (281)
T 3lcv_B 267 Q-RLEIGN 273 (281)
T ss_dssp E-EEEETT
T ss_pred e-eeeecC
Confidence 3 334443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=100.59 Aligned_cols=100 Identities=12% Similarity=0.267 Sum_probs=77.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCCC--------CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFEA--------IP- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~~--------~~- 171 (279)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.|++. .++++++.+|+.+. .+
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34567999999999999999999999999999999 8888877642 23699999999874 22
Q ss_pred -ccceeeehhhhc----------------cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 -QANAVLLKWILH----------------NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 -~~D~v~~~~vlh----------------~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++.-..+ +........+++.+.+.|+ |||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV---SGGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEE---EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC---CCCEEEEE
Confidence 599999962222 1222335688999999999 79998875
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=97.28 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C------Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I------PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~D 174 (279)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++++++.+|..+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999986 789999999 888877764 34699999999865 2 2 4599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+|++... ......+|+++.+.|+ |||.+++.+..+..
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lk---pGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVT---PKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEE---EEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcC---CCeEEEEECCccCC
Confidence 9988543 3456778999999999 79988887766544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-11 Score=97.39 Aligned_cols=99 Identities=10% Similarity=0.253 Sum_probs=81.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C---Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I---PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~---~~~D~v~ 177 (279)
..+..+|||||||+|..+..+++.+|..+++++|+ +..++.|++ ..++++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34678999999999999999999999999999999 888888774 235899999998762 1 3599999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
+....+ +...+|+++.++|+ |||.+++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~---pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVR---PGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEE---EEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcC---CCeEEEEEcCCc
Confidence 877654 45688999999999 799988865443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-11 Score=95.46 Aligned_cols=99 Identities=9% Similarity=0.091 Sum_probs=79.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---Cc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---PQ 172 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~ 172 (279)
.+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ...++++..+|..+.. ..
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3444443 567889999999999999999998 578999999 888888774 1257999999998732 25
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
||+|++..++|++++ ++.+.|+ |||++++.-.
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~---pgG~lv~~~~ 175 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLD---EGGILVLPVG 175 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEE---EEEEEEEEEC
T ss_pred ccEEEEccchhhhhH--------HHHHhcc---cCcEEEEEEc
Confidence 999999999998876 4678899 7999888654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-11 Score=95.81 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=80.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC---
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP--- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~--- 171 (279)
.+++.+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. .+++++..+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444443 4567899999999999999999987 6689999999 8888887741 2579999999866433
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++..++|++++ ++.+.|+ |||++++..
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~---pgG~lv~~~ 177 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLK---DGGKLLMPV 177 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEE---EEEEEEEEE
T ss_pred CeeEEEECCchHHHHH--------HHHHHcC---CCcEEEEEE
Confidence 5999999999998763 6788899 799988865
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.2e-11 Score=99.32 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++...++.+..+|+.+ +.+ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4578999999999999999999988889999999 88898888755789999999876 443 59999986542
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..++++.++|+ |||++++.....
T Consensus 159 ----~~l~~~~~~L~---pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVK---PGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEE---EEEEEEEEEECT
T ss_pred ----hhHHHHHHhcC---CCcEEEEEEcCH
Confidence 24889999999 799999987543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=97.88 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CC------Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AI------PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~------~~~D 174 (279)
.+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++ ..++++++.+|..+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4678999999999999999999875 789999999 888888874 34589999999743 12 3599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+|++....+.+.+ ..++++.+ +.|+ |||.+++.+..
T Consensus 137 ~V~~d~~~~~~~~--~~~~~~~~-~~Lk---pgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLP--DTLLLEKC-GLLR---KGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHH--HHHHHHHT-TCCC---TTCEEEESCCC
T ss_pred EEEEcCCcccchH--HHHHHHhc-cccC---CCeEEEEeCCC
Confidence 9999877765533 34677777 9999 79988775543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-11 Score=103.58 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ....++++.+|+.+ +.+ .||+|++...+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999997 569999999 888888774 23358999999988 333 5999999988886
Q ss_pred ---CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 ---WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ---~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
...+...++++++.+.|+ |||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lk---pGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLR---PGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcC---cCcEEEEEE
Confidence 345667899999999999 799998864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-11 Score=97.17 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------CCCCeEEeeCCCCC--C--CC--cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------TNDNLDFLGGNMFE--A--IP--QA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~--~--~~--~~ 173 (279)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|++ ...+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567899999999999999999999999999999 888876541 23689999999876 2 33 48
Q ss_pred ceeeehhhhccCChh---H----HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 174 NAVLLKWILHNWNDE---E----SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 174 D~v~~~~vlh~~~~~---~----~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|.|++...-. |... . ...+|++++++|+ |||.+++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lk---pGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLR---VGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEE---EEEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCC---CCCEEEEEe
Confidence 9988643211 1110 0 1368999999999 799988764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=98.17 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=80.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C------Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I------PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~D 174 (279)
.+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.+++ ..++++++.+|..+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999988 789999999 888888764 346799999998652 1 4599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
+|++.. +......+++++.+.|+ |||.+++.+..+.
T Consensus 143 ~v~~~~-----~~~~~~~~l~~~~~~L~---pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDA-----DKANTDLYYEESLKLLR---EGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECS-----CGGGHHHHHHHHHHHEE---EEEEEEEECSSGG
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcC---CCcEEEEeCCCcC
Confidence 999644 34456789999999999 7999888776554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=96.66 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=79.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCCCC---Cccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFEAI---PQAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~~~---~~~D 174 (279)
.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ..+++++.+|+.+.. ..||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444443 4567899999999999999999986 78999999 8888888742 128999999997733 2599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|++..++|++.+ ++.++|+ |||++++...
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~---pgG~l~~~~~ 166 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLK---EGGIMILPIG 166 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEE---EEEEEEEEEC
T ss_pred EEEECCcHHHHHH--------HHHHHcC---CCcEEEEEEc
Confidence 9999999998764 4778899 7999988754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=90.65 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=77.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-C--------CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-A--------IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~--------~~--~~D~v~~ 178 (279)
..+..+|||+|||+|.++..+++.+ |+.+++++|+.++++. .++++..+|+.+ + .+ .||+|++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence 3567799999999999999999995 7789999999444321 689999999987 4 44 5999999
Q ss_pred hhhhccCChhH---------HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KWILHNWNDEE---------SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~vlh~~~~~~---------~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..++|...... ...+++++.++|+ |||.+++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~---~gG~l~~~~~ 137 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 137 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcC---CCcEEEEEEe
Confidence 88887655431 1588999999999 7999887664
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-10 Score=99.50 Aligned_cols=97 Identities=21% Similarity=0.299 Sum_probs=76.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||||||+|.++..++++ +..+++++|..++++.|++ ..++++++.+|+.+ +.+ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999999987 4568999999558777764 23789999999987 555 5999998663
Q ss_pred hccC-ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 182 LHNW-NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 182 lh~~-~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+.+ .......+|+++.++|+ |||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lk---pgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLA---KGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEE---EEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcC---CCcEEE
Confidence 2222 23345678999999999 799887
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=91.31 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=73.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC--CCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-C------------------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP--DIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-A------------------ 169 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~------------------ 169 (279)
+.+..+|||+|||+|.++..+++++| ..+++++|+.++. . .++++++.+|+.+ +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~-~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----P-IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----C-CTTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----C-CCCceEEEccccchhhhhhccccccccccchhh
Confidence 35678999999999999999999998 6899999995431 1 2579999999977 3
Q ss_pred -------CC--ccceeeehhhhccCC----hhH-----HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 170 -------IP--QANAVLLKWILHNWN----DEE-----SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 170 -------~~--~~D~v~~~~vlh~~~----~~~-----~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+ .||+|++...+|... +.. ..++|+++.++|+ |||.+++.
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk---pgG~lv~~ 153 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN---IGGTYIVK 153 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc---CCCEEEEE
Confidence 23 599999977776431 111 1348999999999 79988773
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=97.76 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------------CCCCeEEeeCCCCCC----CC--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------------TNDNLDFLGGNMFEA----IP-- 171 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~d~~~~----~~-- 171 (279)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ...+++++.+|+.+. .+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4568999999999999999999999999999999 888876642 125899999998762 22
Q ss_pred ccceeeehhhhccCChhHH-----------HHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEES-----------VKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~-----------~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+|.|++. +++... ..+++++.++|+ |||.+++.
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk---pgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLK---EGGVVYTI 172 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEE---EEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcC---CCCEEEEE
Confidence 36777642 233321 378999999999 79998885
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=102.73 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=77.9
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccC----------------CCCeEEeeC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGT----------------NDNLDFLGG 164 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~----------------~~ri~~~~~ 164 (279)
++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++. .+++++..+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 444443 567789999999999999999998 57789999999 8888877641 268999999
Q ss_pred CCCCC---CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 165 NMFEA---IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 165 d~~~~---~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+.+. .+ .||+|++.. ++. ..+++++.++|+ |||++++...
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lk---pgG~lv~~~~ 220 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLK---HGGVCAVYVV 220 (336)
T ss_dssp CTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEE---EEEEEEEEES
T ss_pred ChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcC---CCcEEEEEeC
Confidence 99873 23 499999842 222 137899999999 7999987764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-11 Score=94.15 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=72.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCCC-------Cccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEAI-------PQANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~~-------~~~D~v~~~~ 180 (279)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.++.. ..+++++.+|+.+.. ..||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998765 999999 8888888741 128999999987621 1599999987
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
++| -..++..+.+.+ .++|+ |||.+++....
T Consensus 119 ~~~-~~~~~~~~~~~~-~~~L~---~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLAALFGELLA-SGLVE---AGGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTTHHHHHHHH-HTCEE---EEEEEEEEEET
T ss_pred CCc-hhHHHHHHHHHh-hcccC---CCcEEEEEeCC
Confidence 776 223333333333 48999 79988775543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=98.74 Aligned_cols=97 Identities=19% Similarity=0.316 Sum_probs=76.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||||||+|.++..++++ +..+++++|..++++.|++ ..++++++.+|+.+ +.+ .+|+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345679999999999999998886 4568999999667776663 34689999999987 555 5999998765
Q ss_pred hccC-ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 182 LHNW-NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 182 lh~~-~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+.+ ..+....+|+++.+.|+ |||.++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lk---pgG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLV---EGGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEE---EEEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcC---CCeEEE
Confidence 4443 23345678999999999 799886
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-11 Score=99.96 Aligned_cols=98 Identities=14% Similarity=0.269 Sum_probs=77.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC---CC--Cccceeeehhhhc
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE---AI--PQANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~--~~~D~v~~~~vlh 183 (279)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+|++++.+|..+ .. ..||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999998875 14689999999865 23 2599999865444
Q ss_pred cCChhH--HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 184 NWNDEE--SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 184 ~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
...... ...++++++++|+ |||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lk---pgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLA---PGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEE---EEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcC---CCcEEEEEec
Confidence 322222 1578999999999 7998776543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.2e-11 Score=102.67 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=80.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vl 182 (279)
..+..+|||||||+|.++..++++. ..+++++|...+++.+++ ..++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999973 348999999877777663 34779999999987 554 69999997666
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 183 HNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 183 h~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|.... +....+++++.+.|+ |||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lk---pgG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLK---PTGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEE---EEEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCC---CCeEEEEecC
Confidence 65543 345678999999999 7998876554
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=95.30 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=80.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C------Ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I------PQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 173 (279)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++ ..++++++.+|..+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999987 789999999 888888774 236899999998641 1 459
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
|+|++... ......+++++.+.|+ |||.+++.+..+.
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~---pgG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLR---PGGILAVLRVLWR 183 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEE---EEEEEEEECCSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcC---CCeEEEEECCCcC
Confidence 99998432 3445688999999999 7998888765543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=95.69 Aligned_cols=102 Identities=11% Similarity=0.251 Sum_probs=80.2
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccC--------CCCeEEeeCCCCC-CC
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGT--------NDNLDFLGGNMFE-AI 170 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~--------~~ri~~~~~d~~~-~~ 170 (279)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .++++++.+|+.+ +.
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 3444444 567789999999999999999996 57889999999 8888877641 3689999999987 44
Q ss_pred C--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 171 P--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 171 ~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+ .||+|++. .++. ..+|+++.++|+ |||++++...
T Consensus 168 ~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~---pgG~l~~~~~ 204 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLAP--WEVLDAVSRLLV---AGGVLMVYVA 204 (280)
T ss_dssp CTTCEEEEEEE-----SSCG--GGGHHHHHHHEE---EEEEEEEEES
T ss_pred CCCceeEEEEC-----CcCH--HHHHHHHHHhCC---CCCEEEEEeC
Confidence 3 59999982 2332 267999999999 7999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=98.20 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=80.6
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCC---C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAI---P 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~---~ 171 (279)
.+++.+. ..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++. ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444443 56778999999999999999999987 478999999 8888887741 246999999997732 3
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.||+|++..++|+++ +++.+.|+ |||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lk---pgG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLK---EGGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEE---EEEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcC---CCcEEEEEEC
Confidence 599999999999876 35677899 7999988753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-11 Score=94.92 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--CC-Cccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--AI-PQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~v~~~~ 180 (279)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3567999999999999999999988 789999999 888888774 23579999999865 22 1299998863
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
. ..+...+++++.+.|+ |||.+++.+..+
T Consensus 135 ~-----~~~~~~~l~~~~~~Lk---pgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLA---KNALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEE---EEEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcC---CCeEEEEECccc
Confidence 2 2345688999999999 799888766544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=94.39 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=79.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C--------CCc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A--------IPQ 172 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~--------~~~ 172 (279)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++++++.+|..+ + ...
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999999 888888774 23689999999865 2 135
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
||+|++... ......+++++.+.|+ |||.+++.+..+
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lk---pGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVK---VGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBC---TTCCEEEECTTG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCC---CCeEEEEecCCc
Confidence 999998543 2345788999999999 799888766444
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=90.69 Aligned_cols=97 Identities=12% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v~ 177 (279)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.++. ..++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999999888 45679999999 888888774 235799999998762 23599999
Q ss_pred ehhhhccCChhHHHHHHHHH--HHhCCCCCCCcEEEEEee
Q 023625 178 LKWILHNWNDEESVKLLKKC--KEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~--~~~L~~~~pgG~lli~e~ 215 (279)
+...+|....+ ..++.+ .++|+ |||.+++...
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~---~gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLT---NEAVIVCETD 155 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEE---EEEEEEEEEE
T ss_pred ECCCCCchhHH---HHHHHHHHhcccC---CCCEEEEEeC
Confidence 98776533333 445555 78899 7998877554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-11 Score=92.98 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C-Cccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I-PQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-~~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999987 6679999999 888888774 125799999998762 2 3599999976
Q ss_pred hhccCChhHHHHHHHHHH--HhCCCCCCCcEEEEEeee
Q 023625 181 ILHNWNDEESVKLLKKCK--EAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~--~~L~~~~pgG~lli~e~~ 216 (279)
.+|. .....+++.+. ++|+ |||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~---~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLS---EQVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEE---EEEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcC---CCcEEEEEECC
Confidence 6542 23345566665 8899 79988876543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=95.82 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=78.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C-CC-ccceeeeh-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A-IP-QANAVLLK- 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~-~~-~~D~v~~~- 179 (279)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++. ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45678999999999999999999875 479999999 8888877641 2479999999876 3 23 59999973
Q ss_pred -----hhhcc-------CChhH-------HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 -----WILHN-------WNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 -----~vlh~-------~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+++. |+.++ ..++|+++.+.|+ |||++++...
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk---pGG~lv~stc 247 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK---PGGILVYSTC 247 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEES
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeC
Confidence 23332 22222 2589999999999 7999988664
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-11 Score=95.92 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=76.1
Q ss_pred CEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCC---CC--Cccceeeehh
Q 023625 115 KSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFE---AI--PQANAVLLKW 180 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~---~~--~~~D~v~~~~ 180 (279)
.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ .. ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999875 789999999 888888874 33 589999999865 23 3599998854
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
. ......+++++.+.|+ |||.+++.+..+
T Consensus 138 ~-----~~~~~~~l~~~~~~Lk---pGG~lv~dn~~~ 166 (221)
T 3dr5_A 138 S-----PMDLKALVDAAWPLLR---RGGALVLADALL 166 (221)
T ss_dssp C-----TTTHHHHHHHHHHHEE---EEEEEEETTTTG
T ss_pred c-----HHHHHHHHHHHHHHcC---CCcEEEEeCCCC
Confidence 3 2345678999999999 799887755444
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=91.59 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-----CCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCCC----
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-----PDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEAI---- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~---- 170 (279)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++. .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5679999999 8888877641 368999999998743
Q ss_pred ---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 171 ---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 171 ---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..||+|++...+|++ ++++.+.|+ |||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lk---pgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLA---ENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEE---EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcC---CCcEEEEEEc
Confidence 249999999888754 467788899 7999888654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=95.14 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C---------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I--------- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~--------- 170 (279)
..+..+|||||||+|..+..+++..| ..+++++|. +.+++.+++ ..+++++..+|..+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999987 689999999 888887764 23469999999764 1 1
Q ss_pred --------CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 171 --------PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 171 --------~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
..||+|++... .+....+++++.+.|+ |||.+++.+..++
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~---pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLK---PGGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEE---EEEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcC---CCeEEEEEccccC
Confidence 45999998643 3455688999999999 7999888665443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=88.39 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~ 184 (279)
.+..+|||||||+|.++..+. |..+++++|+ +.+++.++. ...+..+...|... +.+ .+|++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999877 8899999999 899988875 35678899999987 444 5999999989998
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.+++....+ ++.+.|+ +++.++-+.
T Consensus 181 LE~q~~~~~~-~ll~aL~---~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLN---TPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCB---CSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhc---CCCEEEEcC
Confidence 8877655555 8888999 455444433
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=90.24 Aligned_cols=102 Identities=11% Similarity=0.258 Sum_probs=73.6
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC-----------
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI----------- 170 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~----------- 170 (279)
++.+.+. .+.+..+|||+|||+|.++..++++ ..+++++|+.+. .. ..+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~-~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EE-IAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CC-CTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----cc-CCCeEEEEccccCHHHHHHHHHHhhc
Confidence 3444443 2467789999999999999999988 779999999433 12 268999999998732
Q ss_pred ---Cccceeeehhhhcc---------CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 171 ---PQANAVLLKWILHN---------WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 171 ---~~~D~v~~~~vlh~---------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..||+|++...... ..-+.+..+|+.+.++|+ |||.+++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk---pGG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR---NGGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc---CCCEEEEEE
Confidence 36999998432110 111234578999999999 799888644
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.6e-11 Score=94.14 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=75.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CC---CCeEEeeCCCCC--CC---Cc-cceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TN---DNLDFLGGNMFE--AI---PQ-ANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~---~ri~~~~~d~~~--~~---~~-~D~v~~ 178 (279)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.|++ .. ++++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999998887643 58999999 889988874 11 589999999865 21 36 999999
Q ss_pred hhhhccCChhHHHHHHHHH--HHhCCCCCCCcEEEEEeee
Q 023625 179 KWILHNWNDEESVKLLKKC--KEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~--~~~L~~~~pgG~lli~e~~ 216 (279)
...+| . .+...+++.+ .++|+ |||.+++....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lk---pgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLK---PNALIYVETEK 165 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEE---EEEEEEEEEES
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccC---CCcEEEEEECC
Confidence 87755 2 3345778888 56799 79988876544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-10 Score=93.41 Aligned_cols=93 Identities=15% Similarity=0.242 Sum_probs=75.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC------CCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCCCC--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP------DIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEAIP-- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~~-- 171 (279)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++. ..+++++.+|..++.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999999765 368999999 8888877641 3689999999987443
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++...+|++. +++.+.|+ |||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lk---pgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLA---SGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEE---EEEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhc---CCCEEEEEE
Confidence 499999999888654 56788899 799888754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-10 Score=93.59 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=80.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC-CC-ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA-IP-QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-~~-~~D~v~~~~vl 182 (279)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ .-.+++++.+|+.+. .. .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888888774 125789999999773 32 59999986442
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
....+++++.+.|+ |||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lk---pgG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLK---DRGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEE---EEEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcC---CCCEEEEEEcCccc
Confidence 34567899999999 79999987765543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=91.80 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=78.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C-------Cc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I-------PQ 172 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 172 (279)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34578999999999999999999987 789999999 888888763 33589999999865 2 1 35
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
||+|++.. .......+++++.+.|+ |||.+++.+..+
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~---pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVK---VGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEE---EEEEEEEECTTG
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcC---CCeEEEEecCCc
Confidence 99999753 34456789999999999 789877655433
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.3e-10 Score=95.64 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=71.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~ 184 (279)
++++|||||||+|.+++..+++. ..+++++|..++++.|++ ..++|+++.+|+.+ +.| .+|+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999998777653 347999999667776663 46899999999987 566 5999987443332
Q ss_pred C-ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 185 W-NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 185 ~-~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+ .......++....+.|+ |||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lk---p~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLK---EGGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEE---EEEEEE
T ss_pred ccccchhhhHHHHHHhhCC---CCceEC
Confidence 2 23345678888889999 788765
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=88.85 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=76.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC-C--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI-P--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~--~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++. ..+++++|+ +..++.+++ ..+++++..+|+.+.. + .||+|++.
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~- 165 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD- 165 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-
Confidence 456789999999999999999998 679999999 888887764 2368999999998854 3 59999972
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.++. ..+++++.++|+ |||++++...
T Consensus 166 ----~~~~--~~~l~~~~~~L~---~gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VREP--WHYLEKVHKSLM---EGAPVGFLLP 191 (248)
T ss_dssp ----SSCG--GGGHHHHHHHBC---TTCEEEEEES
T ss_pred ----CcCH--HHHHHHHHHHcC---CCCEEEEEeC
Confidence 2332 467999999999 7999998764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-11 Score=99.30 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C--CCCeEEeeCCCCC-CC-Cccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T--NDNLDFLGGNMFE-AI-PQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~-~~-~~~D~v~~~~vl 182 (279)
.+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++. . .++++++.+|+.+ +. ..||+|++..++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 367899999999999999999974 78999999 888888774 1 2589999999987 32 369999999988
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
|...+.. ..+.+++++|+ |||.+++ +......... ..-+ -+....+++.+++...|...
T Consensus 155 ~~~~~~~--~~~~~~~~~L~---pgG~~i~-~~~~~~~~~~--------~~~l-------p~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMS---PDGFEIF-RLSKKITNNI--------VYFL-------PRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCS---SCHHHHH-HHHHHHCSCE--------EEEE-------ETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcC---CcceeHH-HHHHhhCCce--------EEEC-------CCCCCHHHHHHHhccCCCEE
Confidence 8766543 36778899999 7997443 3211100000 0000 11225677888888888766
Q ss_pred eEEEecCCc
Q 023625 263 YKITPMLGV 271 (279)
Q Consensus 263 ~~~~~~~~~ 271 (279)
++.....+.
T Consensus 214 i~~~~~~~~ 222 (241)
T 3gdh_A 214 IEQNFLNNK 222 (241)
T ss_dssp EEEEEETTE
T ss_pred EEehhhcCc
Confidence 655555443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=99.42 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred CCCCEEEEecCC------ccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CC--------Cccc
Q 023625 112 EGLKSLVDVAGG------TGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AI--------PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~--------~~~D 174 (279)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+. . ..++++|+.+|+.+ ++ ..||
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence 356899999999 67777777765 59999999999 6652 1 23799999999987 33 3599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+|++.. .|.+ ++..+.|++++++|| |||.+++.|..
T Consensus 291 lVisdg-sH~~--~d~~~aL~el~rvLK---PGGvlVi~Dl~ 326 (419)
T 3sso_A 291 IVIDDG-SHIN--AHVRTSFAALFPHVR---PGGLYVIEDMW 326 (419)
T ss_dssp EEEECS-CCCH--HHHHHHHHHHGGGEE---EEEEEEEECGG
T ss_pred EEEECC-cccc--hhHHHHHHHHHHhcC---CCeEEEEEecc
Confidence 999754 5654 345789999999999 79999888765
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=93.84 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C------Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I------PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~D 174 (279)
.+..+|||||||+|..+..+++..| +.+++++|. +..++.|++ ..++++++.+|..+ + . ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 4567999999999999999999987 689999999 888888764 23589999999753 1 1 4599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
+|++... ..+...+++++.+.|+ |||.+++.+..+.
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lk---pgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLR---RGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEE---EEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcC---CCeEEEEeCCCcC
Confidence 9997543 3456789999999999 7998888665543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-10 Score=89.77 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=75.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCCC---Cccce
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEAI---PQANA 175 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~---~~~D~ 175 (279)
..+..+|||||||+|..+..+++.. |..+++++|+ +.+++.+++. .++++++.+|..... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999985 6679999999 8888877631 358999999987632 25999
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|++...++++ ++++.+.|+ |||++++..
T Consensus 155 i~~~~~~~~~--------~~~~~~~Lk---pgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLK---PGGRLILPV 182 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEE---EEEEEEEEE
T ss_pred EEECCchHHH--------HHHHHHhcC---CCcEEEEEE
Confidence 9998887654 357788999 799988864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-10 Score=88.22 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=72.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC---------CeEEEeeChhHHhhcccCCCCeEEe-eCCCCC-C--------CC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD---------IKCTVFDLPHVVDNLQGTNDNLDFL-GGNMFE-A--------IP 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~ri~~~-~~d~~~-~--------~~ 171 (279)
+.+..+|||+|||+|.++..++++++. .+++++|+.++. .. .+++++ .+|+.+ + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~-~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PL-EGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CC-TTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cC-CCCeEEEeccCCCHHHHHHHHHhcC
Confidence 456789999999999999999999865 799999995421 12 578899 999876 2 12
Q ss_pred --ccceeeehhhhcc----CChhH-----HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 172 --QANAVLLKWILHN----WNDEE-----SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 172 --~~D~v~~~~vlh~----~~~~~-----~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.||+|++...+|. ..+.. ...+++++.++|+ |||++++...
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lv~~~~ 146 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ---PGGTFLCKTW 146 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEEC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc---CCCEEEEEec
Confidence 5999998554432 12211 1478999999999 7999987653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-10 Score=95.87 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=77.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCCC---CC-ccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFEA---IP-QANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~~---~~-~~D~v~ 177 (279)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.+++. .+|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999999878889999999 8888887741 36899999998652 23 599999
Q ss_pred ehhhhccCChhHH--HHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDEES--VKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~~~--~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+....+..+.+.. ..++++++++|+ |||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~---pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALK---PNGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEE---EEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcC---CCcEEEEE
Confidence 8544332222222 589999999999 79988775
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=94.17 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=82.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AI-- 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~-- 170 (279)
..++.... +.+..+|||+|||+|.++++++... |..+++++|+ +.+++.|+.. -+++++..+|+.+ +.
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 33444443 5677899999999999999999988 8899999999 8999888741 1389999999987 33
Q ss_pred CccceeeehhhhccCCh--h----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 171 PQANAVLLKWILHNWND--E----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~--~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.+|+|++.-..+.... . ....+++++.+.|+ |||+++++.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk---pgG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP---PGGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC---TTCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC---CCcEEEEEe
Confidence 35899998543322111 1 22678999999999 799998864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=97.26 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCCC----CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFEA----IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~~----~~~~D~v~ 177 (279)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.|++. .+|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3567999999999999999999888889999999 8888887741 46899999998652 23599999
Q ss_pred ehhhhccCChhHH--HHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LKWILHNWNDEES--VKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~~vlh~~~~~~~--~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+...-+.-++... ..++++++++|+ |||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lk---pgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALK---EDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEE---EEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcC---CCeEEEEEC
Confidence 8543322122221 688999999999 799887753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=97.57 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC---CC--Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE---AI--PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~---~~--~~~D~v 176 (279)
....+|||||||+|..+..+++..|..+++++|+ +.+++.|++. .+|++++.+|..+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 8888887741 3689999999765 22 259999
Q ss_pred eehhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 177 LLKWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 177 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
++....+....+. ...++++++++|+ |||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALR---PGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEE---EEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcC---CCcEEEEe
Confidence 9854321111111 3689999999999 79988774
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=96.50 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCC----CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEA----IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~----~~~~D~v 176 (279)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.+++. .+|++++.+|..+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999999 8888877631 36899999998652 2359999
Q ss_pred eehhhhcc---CChhH--HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHN---WNDEE--SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~---~~~~~--~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++....|. -+.+. ...++++++++|+ |||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLN---PGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEE---EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcC---CCcEEEEEc
Confidence 99765543 11111 3688999999999 799888764
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-10 Score=93.87 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=69.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-----hhHHhhcc-c-C-CCCeEEeeC-CCCC-CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-----PHVVDNLQ-G-T-NDNLDFLGG-NMFE-AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~-~-~-~~ri~~~~~-d~~~-~~~~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..++++ .+++++|+ +..++... . . .++++++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999987 47999997 43333222 1 1 257999999 9887 444699999865
Q ss_pred hhc---cCChhH-HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 ILH---NWNDEE-SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 vlh---~~~~~~-~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.++ ...+.. ...+|+.+.++|+ |||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lk---pGG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLS---NNTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCC---TTCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhC---CCCEEEE
Confidence 543 122222 2368999999999 7997776
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=94.99 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------------CCCCeEEeeCCCCCC---CCc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------------TNDNLDFLGGNMFEA---IPQ 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~d~~~~---~~~ 172 (279)
....+|||||||+|.++..+++. |..+++++|+ +.+++.|++ ..+|++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999999 888887763 136899999997542 235
Q ss_pred cceeeehhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 173 ANAVLLKWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
||+|++....+..+... ...++++++++|+ |||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~---pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALN---NPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcC---CCcEEEEE
Confidence 99999865433222222 2678999999999 79988775
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-10 Score=94.87 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=76.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------C-CCCeEEeeCCCCC--C-C-Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------T-NDNLDFLGGNMFE--A-I-PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~-~~ri~~~~~d~~~--~-~-~~~D~v~ 177 (279)
+...+|||||||+|.++.++++..+..+++++|+ +.+++.|++ . .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3468999999999999999998877789999999 889888774 1 4699999999865 2 2 3599999
Q ss_pred ehhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+....+..+... ...++++++++|+ |||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~---pgG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALK---EDGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcC---CCcEEEEE
Confidence 854433222111 2478999999999 78987764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=6e-10 Score=88.95 Aligned_cols=97 Identities=11% Similarity=0.136 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC--CC--Cccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE--AI--PQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~--~~--~~~D~v~~~~vl 182 (279)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++. .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999999887753 38999999 8999888741 1589999999865 32 259999987765
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
| . .....+++.+.+ +|+ |||.+++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~---pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLA---DEALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEE---EEEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccC---CCcEEEEEECC
Confidence 5 2 233466777765 499 79988776543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=97.23 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCCC---C-Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFEA---I-PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~~---~-~~~D~v~ 177 (279)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.+++. .+|++++.+|..+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3467999999999999999999878889999999 8888887641 36899999998652 2 3599999
Q ss_pred ehhhhccCCh-hHH--HHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWND-EES--VKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~-~~~--~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+...-+ +.+ +.. .+++++++++|+ |||.+++.
T Consensus 195 ~d~~~p-~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDP-IGPAETLFNQNFYEKIYNALK---PNGYCVAQ 229 (321)
T ss_dssp EECCCS-SSGGGGGSSHHHHHHHHHHEE---EEEEEEEE
T ss_pred ECCcCC-CCcchhhhHHHHHHHHHHhcC---CCcEEEEE
Confidence 854222 222 221 688999999999 78988774
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=96.23 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC--C--CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE--A--IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~--~--~~~~D~v~ 177 (279)
....+|||||||+|..+..++++.|..+++++|+ +.+++.|++. .+|++++.+|..+ + ...||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 8888887641 4789999999865 2 23599999
Q ss_pred ehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+....+..+.. ....++++++++|+ |||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALK---EDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEE---EEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccC---CCeEEEEec
Confidence 85443322111 12478999999999 799887754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.7e-10 Score=87.43 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+-...||+|++...+|.+.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999987 5557999999 889998886434899999999872246999999999998876555
Q ss_pred HHHHHHHHHhC
Q 023625 191 VKLLKKCKEAI 201 (279)
Q Consensus 191 ~~~L~~~~~~L 201 (279)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 67888888775
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-10 Score=94.56 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=75.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCC-CCCc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFE-AIPQ 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~~~~ 172 (279)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 44555554 4567899999999999999999984 48999999 8888877641 2589999999987 6778
Q ss_pred cceeeehhhhccCChhHHHHHHH--------------HH--HHhCCCCCCCcEE
Q 023625 173 ANAVLLKWILHNWNDEESVKLLK--------------KC--KEAIPSKDEGGKV 210 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~--------------~~--~~~L~~~~pgG~l 210 (279)
+|+|++... ++|+.+....+|. ++ +.+++ |||++
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlk---PGg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAK---PGDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCC---TTCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcC---CCCcc
Confidence 999888433 3455555555553 22 35789 79865
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-10 Score=92.07 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=70.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccC-------CCCeEEe--eCCCCC-CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT-------NDNLDFL--GGNMFE-AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~ri~~~--~~d~~~-~~~~~D~v~~~~ 180 (279)
+.+..+|||||||+|.++..+++. .+++++|+.+++..+++. ..++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456789999999999999999887 689999994454433321 1168888 999987 433699999876
Q ss_pred hhccCChh-----HHHHHHHHHHHhCCCCCCCc--EEEEEe
Q 023625 181 ILHNWNDE-----ESVKLLKKCKEAIPSKDEGG--KVIIID 214 (279)
Q Consensus 181 vlh~~~~~-----~~~~~L~~~~~~L~~~~pgG--~lli~e 214 (279)
. +..+.. ....+|+.+.++|+ ||| .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk---pGG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKV---KNPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhc---cCCCeEEEEEe
Confidence 5 332221 12348899999999 799 777744
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.4e-10 Score=93.02 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=70.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccC-------CCCeEEe--eCCCCC-CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT-------NDNLDFL--GGNMFE-AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~ri~~~--~~d~~~-~~~~~D~v~~~~ 180 (279)
+.+..+|||+|||+|.++..++++ .+++++|+.+++..+++. ..+++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 589999994454433321 1168899 999876 433699999876
Q ss_pred hhccCChh-----HHHHHHHHHHHhCCCCCCCc--EEEEEe
Q 023625 181 ILHNWNDE-----ESVKLLKKCKEAIPSKDEGG--KVIIID 214 (279)
Q Consensus 181 vlh~~~~~-----~~~~~L~~~~~~L~~~~pgG--~lli~e 214 (279)
. +..+.. ....+|+.+.++|+ ||| .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk---pGG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLE---YNQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhc---cCCCcEEEEEe
Confidence 5 332221 12347899999999 799 877743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-09 Score=83.83 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCCCCccceeeehhhhccCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEAIPQANAVLLKWILHNWN 186 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~ 186 (279)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.++.. .-+++++.+|+.+-...||+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 3567999999999999999998743 47999999 8888887742 1279999999987323699999988888776
Q ss_pred hhHHHHHHHHHHHhCC
Q 023625 187 DEESVKLLKKCKEAIP 202 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~ 202 (279)
......+|+++.+.+.
T Consensus 127 ~~~~~~~l~~~~~~l~ 142 (207)
T 1wy7_A 127 KHADRPFLLKAFEISD 142 (207)
T ss_dssp TTTTHHHHHHHHHHCS
T ss_pred CCchHHHHHHHHHhcC
Confidence 6555678888888763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=103.94 Aligned_cols=103 Identities=12% Similarity=0.229 Sum_probs=81.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC---CC-C-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE---AI-P-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~---~~-~-~~D~v~~~ 179 (279)
+.+..+|||||||.|.++..|++. +.+++++|. +.+++.|+. . ..+++|..++..+ +. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 456689999999999999999997 678999999 888888773 2 1368999998865 22 2 59999999
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+|||.++++....+.++.+.++ ++++.++...+..
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~---~~~~~~~~~~~~~ 177 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLA---DVTQAVILELAVK 177 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHH---HHSSEEEEECCCT
T ss_pred cchhcCCCHHHHHHHHHHHHHhc---cccceeeEEeccc
Confidence 99999998876666667777787 5777777665443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-09 Score=92.96 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=80.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~v~~ 178 (279)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+++++.+|+.+ + .+ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 456789999999999999999999887 79999999 777776653 12579999999876 3 33 4999996
Q ss_pred ------hhhhccCChh-------HH-------HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 179 ------KWILHNWNDE-------ES-------VKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ------~~vlh~~~~~-------~~-------~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..+++..++. +. .++|+++.+.|+ |||++++++...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk---pGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK---PGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE---EEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEeCCC
Confidence 3455544332 11 578999999999 799999877543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-09 Score=89.42 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCCCCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+...+|||||||+|..+.++++. + .+++++|+ +.+++.|++. .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 34579999999999999999998 7 89999999 8999988752 358999999987633569999985
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+++. .++++++++|+ |||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~---pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLK---EDGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEE---EEEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcC---CCcEEEEE
Confidence 23332 48999999999 79988774
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=91.96 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC--C-C-Cccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE--A-I-PQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~--~-~-~~~D~v~~ 178 (279)
...+|||||||+|..+..+++..|..+++++|+ +.+++.+++. .++++++.+|..+ + . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999878889999999 8888877641 3689999999755 2 2 25999997
Q ss_pred hhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...-+...+. ...+++++++++|+ |||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lk---pgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALK---EDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEE---EEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcC---CCcEEEEE
Confidence 4322201111 12578999999999 79988774
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.2e-09 Score=86.83 Aligned_cols=121 Identities=14% Similarity=0.195 Sum_probs=90.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C-CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A-IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~~~D~v~~~~v 181 (279)
..++.+|||+|||+|.+++.++++ ...+++++|+ |..++.+++ ..+++++..+|..+ + ...||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 457889999999999999999987 4568999999 888887763 46889999999987 3 235999987532
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
..+...|..+.++|+ |||.|.+.+.+..+... ....+.++++.++.|++
T Consensus 202 ------~~~~~~l~~a~~~lk---~gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAK---DGAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp ------SSGGGGHHHHHHHEE---EEEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred ------CcHHHHHHHHHHHcC---CCCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCc
Confidence 123467888889999 79988777665432111 11446678888999987
Q ss_pred ee
Q 023625 262 HY 263 (279)
Q Consensus 262 ~~ 263 (279)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=87.83 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCC-CeEEeeCCCCCC-------CCccceee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TND-NLDFLGGNMFEA-------IPQANAVL 177 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~~-------~~~~D~v~ 177 (279)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 46799999999999999999864 38999999 888888774 223 599999998762 13599999
Q ss_pred ehhhhccC--------ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 178 LKWILHNW--------NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 178 ~~~vlh~~--------~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+.-..... ..++...+++++.++|+ |||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lk---pgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILS---PKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC---TTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcC---cCcEEEEEEC
Confidence 83221000 12345689999999999 7998776553
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-09 Score=90.87 Aligned_cols=89 Identities=15% Similarity=0.278 Sum_probs=64.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~~~ 173 (279)
..+++... ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34444443 456789999999999999999987 468999999 8888877641 2689999999987 56689
Q ss_pred ceeeehhhhccCChhHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L 194 (279)
|+|++.-. +++..+....+|
T Consensus 108 D~Vv~n~p-y~~~~~~~~~ll 127 (299)
T 2h1r_A 108 DVCTANIP-YKISSPLIFKLI 127 (299)
T ss_dssp SEEEEECC-GGGHHHHHHHHH
T ss_pred CEEEEcCC-cccccHHHHHHH
Confidence 99988544 456666666666
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-09 Score=90.89 Aligned_cols=122 Identities=10% Similarity=0.057 Sum_probs=89.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
+.+..+|||+|||+|.+++.+++..+..+++++|+ +.+++.|+. ..++++++.+|+.+ +.+ .||+|++.-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 35678999999999999999999988778999999 899988874 23589999999987 443 599999954
Q ss_pred hhccCC------hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 181 ILHNWN------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 181 vlh~~~------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
..+... .+.-.++++.++++|+ |+++++.. +.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l~-----g~~~~i~~-------------------------------~~~~~~~~ 338 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVLE-----KRGVFITT-------------------------------EKKAIEEA 338 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHEE-----EEEEEEES-------------------------------CHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHcC-----CeEEEEEC-------------------------------CHHHHHHH
Confidence 433211 1112567888888875 44444321 34567788
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
+++.||+..+...+
T Consensus 339 ~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 339 IAENGFEIIHHRVI 352 (373)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEE
Confidence 89999998887665
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-09 Score=87.48 Aligned_cols=104 Identities=11% Similarity=0.116 Sum_probs=77.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C------CCcccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A------IPQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~------~~~~D~v 176 (279)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ . ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 79999999 787877663 1 2489999999875 2 2359999
Q ss_pred eeh------hhhcc---CCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 177 LLK------WILHN---WND-------EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 177 ~~~------~vlh~---~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++. .+++. |+. +...++|+++.+.|+ |||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK---KDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE---EEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCC
Confidence 985 22221 122 123689999999999 799988866433
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=89.43 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=73.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC--Cccceeeehhhhc-----
Q 023625 113 GLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI--PQANAVLLKWILH----- 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~v~~~~vlh----- 183 (279)
...+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+.+.. ..||+|++.=...
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 45699999999999999999987 6789999999 7777766 68999999998733 3699999841111
Q ss_pred -----cCChhH-----------------HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 184 -----NWNDEE-----------------SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 184 -----~~~~~~-----------------~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+..++. ...+++++.+.|+ |||+++++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk---~~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK---PGGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE---EEEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 122221 1267899999999 7999887653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=85.82 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=81.3
Q ss_pred hCCCCEEEEecC------CccHHHHHHHHHCC-CCeEEEeeChhHHhhcccCCCCeEE-eeCCCCC-CCC-ccceeeehh
Q 023625 111 FEGLKSLVDVAG------GTGIMARAIATAFP-DIKCTVFDLPHVVDNLQGTNDNLDF-LGGNMFE-AIP-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~ri~~-~~~d~~~-~~~-~~D~v~~~~ 180 (279)
+.+..+|||+|| |+|. ..+++..| ..+++++|+.+. . .++++ +.+|+.+ +.+ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v-~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------V-SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------B-CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------C-CCCEEEEECccccCCccCcccEEEEcC
Confidence 466789999999 5577 44566666 689999999433 1 47889 9999987 444 599999853
Q ss_pred hhcc-----C----ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 181 ILHN-----W----NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 181 vlh~-----~----~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
..+. . ..+....+|+.+.++|+ |||++++...... ...++
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk---pGG~~v~~~~~~~----------------------------~~~~l 180 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLA---LGGSIAVKITEHS----------------------------WNADL 180 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEE---EEEEEEEEECSSS----------------------------CCHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcC---CCcEEEEEEeccC----------------------------CHHHH
Confidence 2211 0 12234588999999999 7999887542110 12367
Q ss_pred HHHHHHCCCceeEEE
Q 023625 252 KKLFLAAGFSHYKIT 266 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~ 266 (279)
.+++++.||..+++.
T Consensus 181 ~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 181 YKLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCcEEEEE
Confidence 788888888876665
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=89.78 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=76.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--CC-ccceeee-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--IP-QANAVLL- 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~~-~~D~v~~- 178 (279)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++. .. +.++.+|..+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999999875 68999999 8888777641 23 8999999765 2 23 5999996
Q ss_pred -----hhhh-------ccCChhHH-------HHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 179 -----KWIL-------HNWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 -----~~vl-------h~~~~~~~-------~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
..++ ..|++++. .++|+++.+.|+ |||+|++....
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk---pGG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG---PGGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE---EEEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEecc
Confidence 1122 23333333 679999999999 79998876543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=89.13 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=79.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC---CC--ccceeee--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA---IP--QANAVLL-- 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~~--~~D~v~~-- 178 (279)
..++.+|||+|||+|..+..+++..++.+++++|+ +..++.+++ ...+++++.+|+.+. .+ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 35678999999999999999999998889999999 777776653 234689999999863 22 5999986
Q ss_pred ----hhhhccCCh-------hHH-------HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 179 ----KWILHNWND-------EES-------VKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ----~~vlh~~~~-------~~~-------~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..+++..++ ++. .++|+++.+.|+ |||++++.+..+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk---pGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK---TGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE---EEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEECCC
Confidence 234444333 222 488999999999 799998877443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=82.62 Aligned_cols=83 Identities=11% Similarity=0.283 Sum_probs=59.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC-ccc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~-~~D 174 (279)
..+++.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .++++++.+|+.+ +.+ +.+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 44554443 4567899999999999999999986 68999999 8888877642 2689999999987 555 233
Q ss_pred eeeehhhhccCCh
Q 023625 175 AVLLKWILHNWND 187 (279)
Q Consensus 175 ~v~~~~vlh~~~~ 187 (279)
..++++.-++++.
T Consensus 96 ~~vv~nlPy~~~~ 108 (244)
T 1qam_A 96 YKIFGNIPYNIST 108 (244)
T ss_dssp CEEEEECCGGGHH
T ss_pred eEEEEeCCcccCH
Confidence 3444444444433
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=88.60 Aligned_cols=99 Identities=12% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC-----CeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD-----IKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~v~~~~ 180 (279)
+..+|+|+|||+|.++..+++..+. .+++++|+ +.+++.|+. ...++.+..+|.+.+.+ .||+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998764 68999999 888888764 12378999999988543 599999987
Q ss_pred hhccCChhHH----------------HHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEES----------------VKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~~----------------~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.++.++.++. ..+++++.+.|+ |||+++++.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk---~gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK---PGGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC---CCCEEEEEE
Confidence 7666654432 268999999999 799888765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=88.51 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=75.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~v~~~ 179 (279)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998664 68999999 878877663 12579999999865 2 23 59999872
Q ss_pred h------hhc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 W------ILH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~------vlh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
- +++ .|+.++ ..++|+++.+.|+ |||+|+.....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk---pGG~LvYsTCs 236 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK---NKGQLIYSTCT 236 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE---EEEEEEEEESC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEee
Confidence 2 222 122221 1388999999999 79998876543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-09 Score=84.90 Aligned_cols=105 Identities=13% Similarity=0.230 Sum_probs=73.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC---c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP---Q 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~---~ 172 (279)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++++++.+|+.+ +.+ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 34555544 4567899999999999999999985 78999999 8888888753 3589999999987 544 3
Q ss_pred cceeeehhhhccCChhHHHHH----------H----HHHHHhCCCCCCCcEEEEEe
Q 023625 173 ANAVLLKWILHNWNDEESVKL----------L----KKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~----------L----~~~~~~L~~~~pgG~lli~e 214 (279)
| .|+ ++.-++.+.+....+ + +.+.+.|+ |||++.++.
T Consensus 95 f-~vv-~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~---~~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIV-GNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD---IHRTLGLLL 145 (245)
T ss_dssp E-EEE-EECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHC---GGGSHHHHT
T ss_pred c-EEE-EeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhC---CCCchhhhh
Confidence 6 333 333233333322333 2 55788888 688876543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=83.98 Aligned_cols=102 Identities=19% Similarity=0.296 Sum_probs=77.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC-ccceeeeh--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP-QANAVLLK-- 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~v~~~-- 179 (279)
+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...+++++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999999 888877663 12579999999876 3 33 59999971
Q ss_pred ----hhhc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 180 ----WILH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 180 ----~vlh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.+++ .|++++ ..++|+++.++|+ |||+|++....+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk---pGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR---PGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC---CCCEEEEecccC
Confidence 2232 344332 2478999999999 799988876433
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-07 Score=78.97 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=94.3
Q ss_pred CCEEEEecCCccHHHHHH--------HHHC-------CCCeEEEeeChhHH--------hhccc----------CCCC--
Q 023625 114 LKSLVDVAGGTGIMARAI--------ATAF-------PDIKCTVFDLPHVV--------DNLQG----------TNDN-- 158 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~~--------~~a~~----------~~~r-- 158 (279)
.-+|+|+|||+|..+..+ .+++ |..++..-|+|..- ...++ ...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999999887 3333 78899999985322 22211 0001
Q ss_pred -eEEeeCCCCC-CCC--ccceeeehhhhccCCh------------------------------------hHHHHHHHHHH
Q 023625 159 -LDFLGGNMFE-AIP--QANAVLLKWILHNWND------------------------------------EESVKLLKKCK 198 (279)
Q Consensus 159 -i~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~------------------------------------~~~~~~L~~~~ 198 (279)
+.-+++.|.. .+| .+|+|+++.+||-+++ .|...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346778877 455 5999999999997652 14456799999
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc-ch-----hhhhhc-----------C--CeeCCHHHHHHHHH-HC
Q 023625 199 EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF-DI-----LMVSLF-----------R--GKERSVDDWKKLFL-AA 258 (279)
Q Consensus 199 ~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~-----~~~~~~-----------~--~~~r~~~e~~~ll~-~a 258 (279)
+.|+ |||++++.-...++....... .....+ ++ .-++.. + -..++.+|++.+++ +.
T Consensus 213 ~eL~---pGG~mvl~~~gr~~~~~~~~~-~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 213 AEVK---RGGAMFLVCLGRTSVDPTDQG-GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHEE---EEEEEEEEEEECCCSSTTCCH-HHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHhC---CCCEEEEEEecCCCCcccccc-chhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 9999 799998877655442111000 000011 11 001111 1 22359999999998 59
Q ss_pred CCceeEEEe
Q 023625 259 GFSHYKITP 267 (279)
Q Consensus 259 Gf~~~~~~~ 267 (279)
||++..+..
T Consensus 289 ~F~I~~le~ 297 (374)
T 3b5i_A 289 SFAIDKLVV 297 (374)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999877643
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-08 Score=87.24 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=74.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCC-------CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEA-------IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~-------~~~~D~v 176 (279)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ . .++++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 467899999999999999999874 458999999 888888774 2 23899999998762 1259999
Q ss_pred eehhhhccC-------ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNW-------NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~-------~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.-..... .......++.++.+.|+ |||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLN---EGGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEe
Confidence 985221110 01345788999999999 789887754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-08 Score=81.10 Aligned_cols=89 Identities=13% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCc--c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQ--A 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~--~ 173 (279)
..+++... ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++. .++++++.+|+.+ +.+. |
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 44555554 556789999999999999999998 468999999 8888877642 3789999999998 6553 9
Q ss_pred ceeeehhhhccCChhHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L 194 (279)
|+|++.... +++.+-..++|
T Consensus 116 D~Iv~NlPy-~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVANLPY-QISSPITFKLI 135 (295)
T ss_dssp SEEEEECCG-GGHHHHHHHHH
T ss_pred cEEEEeCcc-cccHHHHHHHH
Confidence 999866443 34444333333
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-08 Score=87.49 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=74.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCC-------CCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEA-------IPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~-------~~~~D~v~~~ 179 (279)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++. .++++++.+|..+. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 8888887741 24599999998762 1259999983
Q ss_pred hhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 WILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-.....+. +....+++++.+.|+ |||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLK---EGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEE---EEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEEC
Confidence 22111111 345678999999999 7998887653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-08 Score=83.40 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
.+..+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ ..++++++.+|..+....||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 4678999999 888888774 236899999999874466999998421
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.....+++.+.+.|+ |||.+++.+..
T Consensus 268 ---~~~~~~l~~~~~~L~---~gG~l~~~~~~ 293 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVE---EGGVIHYYTIG 293 (336)
T ss_dssp ---TTGGGGHHHHHHHEE---EEEEEEEEEEE
T ss_pred ---HhHHHHHHHHHHHcC---CCCEEEEEEee
Confidence 123378999999999 79988887754
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-08 Score=86.87 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=72.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCC-CeEEeeCCCCC--C-C----Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TND-NLDFLGGNMFE--A-I----PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~--~-~----~~~D~v 176 (279)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ ..+ +++|+.+|+++ + . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999863 238999999 888888774 223 89999999876 2 1 259999
Q ss_pred eehhhh-----ccCC--hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWIL-----HNWN--DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vl-----h~~~--~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.-.. +... .+...++++.+.+.|+ |||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~---pgG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS---ENGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC---CCcEEEEEe
Confidence 983221 1111 1234567888999999 789877654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.60 E-value=5.3e-08 Score=85.69 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999987 4458999999 888887774 223899999998762 125999998
Q ss_pred hhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.-.....+. .....++.++.+.|+ |||.++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK---DGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE---EEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEC
Confidence 422211111 445688999999999 7998887653
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=82.62 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCC---CC-ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEA---IP-QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~---~~-~~D~v~~~~vl 182 (279)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. .-..++..+|.++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 347899999999999999999974 45999999 8888887741 12235678898762 12 49999984322
Q ss_pred ccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 183 HNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 183 h~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
...+. ....++++.+.+.|+ |||.++++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lk---pGG~Lv~~s~ 327 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLA---EEGFLWLSSC 327 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEE---EEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEEC
Confidence 11111 233578999999999 7998886653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=82.45 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=79.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPD--------------------------------------IKCTV 142 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 142 (279)
..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 33444443 566789999999999999988876443 56999
Q ss_pred eeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc-CC-hhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 143 FDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN-WN-DEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 143 ~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~-~~-~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+|+ +.+++.|+. ..++++++.+|+.+ +.+ .||+|++.=..+. +. +++...+.+.+.+.|++. ||++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM-PTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC-TTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC-CCCEEE
Confidence 999 899988874 34579999999987 444 5999998633221 11 245556677666666632 588888
Q ss_pred EEee
Q 023625 212 IIDM 215 (279)
Q Consensus 212 i~e~ 215 (279)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-07 Score=79.16 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=81.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPD--------------------------------------IKCTV 142 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 142 (279)
..++.... +.+...|+|.+||+|.++++.+....+ .++++
T Consensus 184 aall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 184 AAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 33444333 567789999999999999988875443 56999
Q ss_pred eeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc-C-ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 143 FDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN-W-NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 143 ~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~-~-~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+|+ +.+++.|+. ..++++++.+|+.+ +.+ .+|+|++.=..+. + ..++...+.+.+.+.|++. ||++++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL-KTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC-TTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC-CCcEEE
Confidence 999 899988874 34679999999987 443 5999998633221 2 2356677888888888742 589888
Q ss_pred EEee
Q 023625 212 IIDM 215 (279)
Q Consensus 212 i~e~ 215 (279)
++..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.3e-07 Score=78.95 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=65.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCC-------Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAI-------PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~-------~~~D~v~ 177 (279)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+.. ..+++|+.+|+.+.. ..||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 345679999999999999999987 578999999 8888887741 248999999998732 1499999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+.- +...+..+++.+.+ ++ |++.+++
T Consensus 362 ~dP-----Pr~g~~~~~~~l~~-~~---p~~ivyv 387 (433)
T 1uwv_A 362 LDP-----ARAGAAGVMQQIIK-LE---PIRIVYV 387 (433)
T ss_dssp ECC-----CTTCCHHHHHHHHH-HC---CSEEEEE
T ss_pred ECC-----CCccHHHHHHHHHh-cC---CCeEEEE
Confidence 732 22222345555544 56 5665554
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-07 Score=75.35 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=64.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCC-CCCc-c-ce
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFE-AIPQ-A-NA 175 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~~-~-D~ 175 (279)
..+++..+ ..+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++. ..+++++.+|+.+ +.+. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 44555554 456789999999999999999987 4578999999 8888887753 3589999999987 5543 1 34
Q ss_pred eeehhhhccCChhHHHHHH
Q 023625 176 VLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L 194 (279)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 5555555555444333333
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=79.14 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C--C--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A--I-- 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-- 170 (279)
..+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.|++ ..++++++.+|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44555554 45678999999999999999999999889999999 899988874 22689999999865 2 1
Q ss_pred ---Cccceeeeh
Q 023625 171 ---PQANAVLLK 179 (279)
Q Consensus 171 ---~~~D~v~~~ 179 (279)
..+|.|++.
T Consensus 94 ~g~~~~D~Vl~D 105 (301)
T 1m6y_A 94 LGIEKVDGILMD 105 (301)
T ss_dssp TTCSCEEEEEEE
T ss_pred cCCCCCCEEEEc
Confidence 358988863
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=9.3e-07 Score=76.75 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCEEEEecCCccHHHHHHHHH-----------------CCCCeEEEeeCh-----------hH-Hhhccc-C--CCCeE-
Q 023625 114 LKSLVDVAGGTGIMARAIATA-----------------FPDIKCTVFDLP-----------HV-VDNLQG-T--NDNLD- 160 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a~~-~--~~ri~- 160 (279)
.-+|+|+||++|..+..+... .|..+++.-|+| +. .+..++ . ..+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999999988776 477889999987 11 111111 1 11223
Q ss_pred --EeeCCCCC-CCC--ccceeeehhhhccCChhH-------------------------H------------HHHHHHHH
Q 023625 161 --FLGGNMFE-AIP--QANAVLLKWILHNWNDEE-------------------------S------------VKLLKKCK 198 (279)
Q Consensus 161 --~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~-------------------------~------------~~~L~~~~ 198 (279)
-++|.|+. .+| .+|+++++.+||-+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567776 455 599999999999544321 2 22388889
Q ss_pred HhCCCCCCCcEEEEEeeecCCC--CCCchhhhhhhhcchhhh--------hhc--CCeeCCHHHHHHHHHHCC-CceeEE
Q 023625 199 EAIPSKDEGGKVIIIDMAIENQ--SQDKESMETQLCFDILMV--------SLF--RGKERSVDDWKKLFLAAG-FSHYKI 265 (279)
Q Consensus 199 ~~L~~~~pgG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~--------~~~--~~~~r~~~e~~~ll~~aG-f~~~~~ 265 (279)
+.|+ |||++++.-...++. ...........+.++... ..+ .-..++.+|++.+++++| |++..+
T Consensus 213 ~eL~---pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELI---SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEE---EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhc---cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 9999 799998876655443 111000011112221100 001 122358999999999985 777765
Q ss_pred E
Q 023625 266 T 266 (279)
Q Consensus 266 ~ 266 (279)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.1e-07 Score=79.61 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=80.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPD--------------------------------------IKCTV 142 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 142 (279)
..++.... +.+..+|||.+||+|.++++.+....+ .++++
T Consensus 185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 33444443 456789999999999999998876422 57999
Q ss_pred eeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc-CC-hhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 143 FDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN-WN-DEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 143 ~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~-~~-~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+|+ +.+++.|+. ..++++|..+|+.+ +.+ .+|+|++.=.... +. .++...+.+.+.+.|++. +|+.++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~-~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL-KNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS-BSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC-CCCEEE
Confidence 999 999988874 33589999999987 444 5999998543321 22 345667777777777632 488888
Q ss_pred EEee
Q 023625 212 IIDM 215 (279)
Q Consensus 212 i~e~ 215 (279)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-07 Score=74.75 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC---cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP---QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~---~~ 173 (279)
..+++... ..+. +|||||||+|.++..++++. .+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34555444 4556 99999999999999999985 68999999 8888887642 3689999999987 544 46
Q ss_pred ceeeehhhhccCChhHHHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKK 196 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~ 196 (279)
|.|+. +.-++++.+-..++|..
T Consensus 112 ~~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEE-EECSSCCHHHHHHHHHH
T ss_pred cEEEe-cCcccccHHHHHHHhcC
Confidence 66554 44556677665666654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.5e-07 Score=65.30 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=61.4
Q ss_pred hCCCCEEEEecCCcc-HHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC----ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTG-IMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP----QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~v~~~~vlh~ 184 (279)
..+..+|||||||+| ..+..|+++ .+..+++.|+ |..++ ++..|+|+|.. +||+|+..+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir---- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR---- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC----
Confidence 345679999999999 588888874 3678999998 65544 88999999754 699998765
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.+...-+.++++... ..++|.-
T Consensus 98 -PP~El~~~i~~lA~~v~-----adliI~p 121 (153)
T 2k4m_A 98 -PPAEIHSSLMRVADAVG-----ARLIIKP 121 (153)
T ss_dssp -CCTTTHHHHHHHHHHHT-----CEEEEEC
T ss_pred -CCHHHHHHHHHHHHHcC-----CCEEEEc
Confidence 45556666777777655 5555543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-07 Score=84.71 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=84.9
Q ss_pred hhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhh--hCCCCEEEEecCCccHHHHHHHHHC----CCCeEEEeeChh
Q 023625 74 VWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEV--FEGLKSLVDVAGGTGIMARAIATAF----PDIKCTVFDLPH 147 (279)
Q Consensus 74 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~~ 147 (279)
.|+.+++|+-+-..|.+|+... +.+..... ......|+|||||+|-++...+++. -.+++.+++..+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 4788888988888888776532 22211110 1234579999999999854444432 234788999855
Q ss_pred HHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEE
Q 023625 148 VVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 148 ~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~l 210 (279)
+...+++ ..++|+++.+|+.+ ..| .+|+|++-..=...--+-...+|....+.|+ |||.+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LK---PgGim 463 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLK---DDGVS 463 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEE---EEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcC---CCcEE
Confidence 6555553 47899999999998 667 5999987543333333445567777888899 68864
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-07 Score=82.52 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-------------CCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCC-C
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-------------PDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFE-A 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~-~ 169 (279)
....+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+. .. .++.+..+|.+. +
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 345799999999999999988763 4567999999 888887763 21 168899999987 3
Q ss_pred CC-ccceeeehhhhccCChh---------------HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 170 IP-QANAVLLKWILHNWNDE---------------ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 170 ~~-~~D~v~~~~vlh~~~~~---------------~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. .||+|++.-.++..... .-..+++++.+.|+ |||++.++-+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk---~gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK---TGGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE---EEEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc---cCCEEEEEEC
Confidence 33 69999987555432211 12478999999999 7999887653
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-07 Score=78.71 Aligned_cols=68 Identities=12% Similarity=0.293 Sum_probs=54.0
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCC-CCC
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFE-AIP 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~ 171 (279)
.+++... ..+..+|||||||+|.++..++++.+. .+++++|+ +.+++.+++. .++++++.+|+.+ +++
T Consensus 33 ~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 33 AIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 3454443 456789999999999999999998654 56999999 8888887753 3689999999987 544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=77.48 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=66.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC-ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP-QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~-~~D~v~~~~vlh 183 (279)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+.. .. ++|+.+|+.+..+ .||+|++.-.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 356789999999999999999986 458999999 8888888741 13 9999999987433 699999843211
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
... ..+++.+. .++ |+|.+++.
T Consensus 365 g~~----~~~~~~l~-~l~---p~givyvs 386 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REK---PGVIVYVS 386 (425)
T ss_dssp CSC----HHHHHHHH-HHC---CSEEEEEE
T ss_pred chH----HHHHHHHH-hcC---CCcEEEEE
Confidence 111 13455444 378 68877764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-07 Score=74.49 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=52.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CC
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AI 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~ 170 (279)
..+++... ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .++++++.+|+.+ +.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 34555444 4567899999999999999999874 68999999 8888887642 3689999999987 44
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=71.33 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=104.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----C----------------------CCCeEEeeCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----T----------------------NDNLDFLGGN 165 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----------------------~~ri~~~~~d 165 (279)
.+...||.+|||.......+...+++++++-+|.|.+++.-++ . .++..+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4578999999999999999999888999999999988865431 1 3789999999
Q ss_pred CCC-CC----------C-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc
Q 023625 166 MFE-AI----------P-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233 (279)
Q Consensus 166 ~~~-~~----------~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 233 (279)
+.+ +. + ...++++-.+|+.++++++.++|+.+.+..+ +|.+++.|.+.+..... +... ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~----~~~~v~~e~i~~~~~~~-~fg~-~m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS----HGLWISYDPIGGSQPND-RFGA-IMQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS----SEEEEEEEECCCCSTTC-CHHH-HHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC----CcEEEEEeccCCCCCcc-hHHH-HHHH
Confidence 987 22 1 2568888899999999999999999999875 78888899887632211 1111 0000
Q ss_pred chhh-h-h--hcCCeeCCHHHHHHHHHHCCCc
Q 023625 234 DILM-V-S--LFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 234 d~~~-~-~--~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
.+.- . . .......++++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1100 0 0 0011234889999999999997
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.1e-07 Score=74.23 Aligned_cols=99 Identities=13% Similarity=0.224 Sum_probs=75.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------CCCCeEEeeCCCCCCC----Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------TNDNLDFLGGNMFEAI----PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~~----~~~D~v 176 (279)
+..++||-||+|.|..+.++++..|..+++++|+ +.+++.+++ ..+|++++.+|..+-+ ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999999877789999999 999988763 2579999999988732 259999
Q ss_pred eehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++-.. ....+. -...+++.++++|+ |||.++...
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~---p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLN---PGGIFVAQN 198 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEE---EEEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhC---CCCEEEEec
Confidence 87321 111111 12367999999999 788777643
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.8e-06 Score=71.15 Aligned_cols=150 Identities=14% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCCEEEEecCCccHHHHHHHHH----------------CCCCeEEEeeCh-hHHhhc-ccCC-----CC---eEEeeCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATA----------------FPDIKCTVFDLP-HVVDNL-QGTN-----DN---LDFLGGNM 166 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a-~~~~-----~r---i~~~~~d~ 166 (279)
..-+|+|+||++|..+..+... .|..+++.-|+| ...... +.+. .+ +.-++|.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3467999999999877655443 467888999984 223222 1111 12 23466778
Q ss_pred CC-CCC--ccceeeehhhhccCCh-------------------------------hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 167 FE-AIP--QANAVLLKWILHNWND-------------------------------EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 167 ~~-~~~--~~D~v~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+. .+| .+|+++++.+||-+++ .|...+|+..++.|+ |||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~---pGG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV---PGGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC---TTCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCceEEE
Confidence 77 456 5999999999995443 134456999999999 7999988
Q ss_pred EeeecCCCCCCch-----h-hhhhhhcchhhhh--------hc--CCeeCCHHHHHHHHHHCCC-ceeEE
Q 023625 213 IDMAIENQSQDKE-----S-METQLCFDILMVS--------LF--RGKERSVDDWKKLFLAAGF-SHYKI 265 (279)
Q Consensus 213 ~e~~~~~~~~~~~-----~-~~~~~~~d~~~~~--------~~--~~~~r~~~e~~~ll~~aGf-~~~~~ 265 (279)
.-...++...... + .....+.++...- .+ .-..++.+|++.++++.|. ++..+
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7766554321000 0 0011111111000 00 1234588999999999965 66554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=81.89 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCC---C-Cccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEA---I-PQANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~-~~~D~v~~~ 179 (279)
.++.+|||+|||+|.++..+++... .+++++|+ +.+++.+++ .. ++++++.+|.++. . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 4578999999999999999988532 46999999 888888774 22 5899999999862 2 359999984
Q ss_pred hhhc--------cC-ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 180 WILH--------NW-NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 180 ~vlh--------~~-~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.-. .+ ...+..++++++.+.|+ |||.+++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk---pgG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR---AGGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcC---CCcEEEEEE
Confidence 3211 01 12345688999999999 799888544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=69.98 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=62.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHh-hcccC---CCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVD-NLQGT---NDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~a~~~---~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
+.+..+|||+|||+|.++..++++.+-.+++++|+..-+. ..... ..++.....++.. .++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 5677899999999999999888876655677777631111 11111 1133334444321 232 599999866544
Q ss_pred ---cCChh-HHHHHHHHHHHhCCCCCCC-cEEEE
Q 023625 184 ---NWNDE-ESVKLLKKCKEAIPSKDEG-GKVII 212 (279)
Q Consensus 184 ---~~~~~-~~~~~L~~~~~~L~~~~pg-G~lli 212 (279)
.+.|+ ....+|+.+.+.|+ || |.+++
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lk---pG~G~FV~ 182 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLA---CGVDNFCV 182 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHT---TCCSEEEE
T ss_pred cCchHHHHHHHHHHHHHHHHHhC---CCCCeEEE
Confidence 12232 33457899999999 78 87776
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=72.10 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCc-c-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQ-A- 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~-~- 173 (279)
..+++... ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++. .++++++.+|+.+ +.+. +
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 34555443 4567899999999999999 54 454444999999 8999888763 1489999999987 5432 2
Q ss_pred ----ceeeehhhhccCChhHHHHHH
Q 023625 174 ----NAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 174 ----D~v~~~~vlh~~~~~~~~~~L 194 (279)
+.++.++.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 244444544444444333443
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=79.50 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=82.5
Q ss_pred hhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHH----C---------CCCeE
Q 023625 74 VWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA----F---------PDIKC 140 (279)
Q Consensus 74 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~---------p~~~~ 140 (279)
.|+.+.+|+-+-..|.+|+... +.+..+ .-.+...|+|||||+|-++...+++ . ...++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 4777788887777777776542 111111 0123468999999999997533222 1 23489
Q ss_pred EEeeC-hhHHhhcc-----cCCCCeEEeeCCCCC-CC------C-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCC
Q 023625 141 TVFDL-PHVVDNLQ-----GTNDNLDFLGGNMFE-AI------P-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDE 206 (279)
Q Consensus 141 ~~~D~-~~~~~~a~-----~~~~ri~~~~~d~~~-~~------~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~p 206 (279)
++++. +.++...+ ...++|+++.+|+.+ .. + .+|+|++-..=.....+-....|..+.+.|+ |
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk---p 526 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK---P 526 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC---T
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC---C
Confidence 99998 44443222 346899999999987 44 4 5999998665333333445567888889999 7
Q ss_pred CcEEE
Q 023625 207 GGKVI 211 (279)
Q Consensus 207 gG~ll 211 (279)
||.++
T Consensus 527 ~Gi~i 531 (745)
T 3ua3_A 527 TTISI 531 (745)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 88643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=69.93 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=68.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-h-------hHHhhcccC------CCCeEEeeCCCCC--C-C---
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-P-------HVVDNLQGT------NDNLDFLGGNMFE--A-I--- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~------~~ri~~~~~d~~~--~-~--- 170 (279)
..+..+|||+|||+|..+..+++. ..+++++|+ + .+++.++.. ..|++++.+|..+ + .
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 568999999 7 777777642 3579999999875 2 2
Q ss_pred -CccceeeehhhhccCC------------------hhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 171 -PQANAVLLKWILHNWN------------------DEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 171 -~~~D~v~~~~vlh~~~------------------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
..||+|++.-.++.-. +.+...+++.+.++.+ .+++|-.+.
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~-----~~vvvk~p~ 218 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK-----KRVVVKRPR 218 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS-----SEEEEEEET
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC-----cEEEEEcCC
Confidence 3599999854333211 1234556667777665 456665543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-06 Score=71.05 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=80.2
Q ss_pred CCCEEEEecCCccHHHHHHHHH-------CCC-----CeEEEeeC-h---hHHh-----------hccc-----------
Q 023625 113 GLKSLVDVAGGTGIMARAIATA-------FPD-----IKCTVFDL-P---HVVD-----------NLQG----------- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~----------- 154 (279)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+. .+++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999999887765 674 58999987 5 2222 1111
Q ss_pred -----C---CCCeEEeeCCCCC--C-CC-----ccceeeehh-hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 155 -----T---NDNLDFLGGNMFE--A-IP-----QANAVLLKW-ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 155 -----~---~~ri~~~~~d~~~--~-~~-----~~D~v~~~~-vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
. ..++++..||..+ + .+ .||+|++-- .-...++--...+|+.+++.|+ |||.++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~---pGG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR---PGGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE---EEEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC---CCcEEEEEe---
Confidence 1 1356788999765 2 22 489999832 1110011012468999999999 799876411
Q ss_pred CCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEE
Q 023625 218 ENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLI 275 (279)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i 275 (279)
. ...+++.|.++||++.++...+.-..++
T Consensus 214 -a----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~ 242 (257)
T 2qy6_A 214 -S----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREML 242 (257)
T ss_dssp -C----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEE
T ss_pred -C----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceE
Confidence 0 1246788899999977654444333333
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-05 Score=67.31 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=54.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-CC-----Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-AI-----PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~~-----~~~D~v~ 177 (279)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ . ..+++++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999975 5679999999 888877663 1 2579999999865 21 2589998
Q ss_pred e
Q 023625 178 L 178 (279)
Q Consensus 178 ~ 178 (279)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.4e-06 Score=77.98 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=75.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC------------------------------------------CCC
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF------------------------------------------PDI 138 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~ 138 (279)
..++.... +.+...|+|.+||+|.++++.+... +..
T Consensus 180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 33444433 4567899999999999999888652 346
Q ss_pred eEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC----ccceeeehhhhcc-C-ChhHHHHHHHHHHHhCCCC
Q 023625 139 KCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP----QANAVLLKWILHN-W-NDEESVKLLKKCKEAIPSK 204 (279)
Q Consensus 139 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~v~~~~vlh~-~-~~~~~~~~L~~~~~~L~~~ 204 (279)
+++++|+ +.+++.|+. ..++++|..+|+.+ ..| .+|+|++.=.... + .+++...+.+.+.+.++..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 999988874 34579999999976 222 5899998522211 1 2234445555444444311
Q ss_pred CCCcEEEEEee
Q 023625 205 DEGGKVIIIDM 215 (279)
Q Consensus 205 ~pgG~lli~e~ 215 (279)
-|||+++|+..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 16999988754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-06 Score=69.81 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=67.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCC-eEEeeC-CCCC-CCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDN-LDFLGG-NMFE-AIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~r-i~~~~~-d~~~-~~~~~ 173 (279)
.++.+.+. +.+..+|||+|||+|.++...+++.+-..++++|+ ......+.. ...+ +.+... |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44555553 67788999999999999999888777667888888 332222221 1112 334433 4433 22359
Q ss_pred ceeeehhhhc----cCChhHHHHHHHHHHHhCCCCCCC--cEEEE
Q 023625 174 NAVLLKWILH----NWNDEESVKLLKKCKEAIPSKDEG--GKVII 212 (279)
Q Consensus 174 D~v~~~~vlh----~~~~~~~~~~L~~~~~~L~~~~pg--G~lli 212 (279)
|+|++-...+ .........+|+-+.+.|+ || |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk---~g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQ---EGNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHH---HHCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcC---CCCCCcEEE
Confidence 9999866554 1112233457888889999 67 87665
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-06 Score=74.15 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C---------------C-CCeEEeeCCCCCC--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T---------------N-DNLDFLGGNMFEA-- 169 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---------------~-~ri~~~~~d~~~~-- 169 (279)
+..+|||+|||+|..++.++++.+..++++.|+ +..++.+++ . . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988889999999 888877663 1 1 2388999998652
Q ss_pred -CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 170 -IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 170 -~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+ .||+|++. .. -....+|..+.+.++ |||.+++.-
T Consensus 127 ~~~~~fD~I~lD-P~-----~~~~~~l~~a~~~lk---~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PF-----GSPMEFLDTALRSAK---RRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CS-----SCCHHHHHHHHHHEE---EEEEEEEEE
T ss_pred hccCCCCEEEeC-CC-----CCHHHHHHHHHHhcC---CCCEEEEEe
Confidence 22 59999852 21 112478899999999 688766643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=74.65 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=63.0
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC---C--------------
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA---I-------------- 170 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~---~-------------- 170 (279)
..+|||+|||+|.++..+++.. .+++++|. +.+++.|+. . -++++|+.+|..+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4789999999999999998753 48999999 888888764 1 25899999998651 1
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..||+|++.- |.. .+..++.+.|+ ++|+++++.
T Consensus 292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~---~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PRS---GLDSETEKMVQ---AYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECC-----CTT---CCCHHHHHHHT---TSSEEEEEE
T ss_pred ccCCCCEEEECc-----Ccc---ccHHHHHHHHh---CCCEEEEEE
Confidence 1589998631 111 23344555666 578887765
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00039 Score=59.28 Aligned_cols=147 Identities=14% Similarity=0.179 Sum_probs=102.4
Q ss_pred CCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeChhHHhhccc----------------------------CCCCeEEee
Q 023625 113 GLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDLPHVVDNLQG----------------------------TNDNLDFLG 163 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~----------------------------~~~ri~~~~ 163 (279)
+...||-+|||.=.....+... .++++++-+|.|++++.=+. ..++..+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999999998875 36789999999988764210 147889999
Q ss_pred CCCCCC--C----------C-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh
Q 023625 164 GNMFEA--I----------P-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ 230 (279)
Q Consensus 164 ~d~~~~--~----------~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~ 230 (279)
.|+.+. + + ..-++++-.+|..++++++.++|+.+.+..+ +|.+++.|.+.++. ++.. .
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~----~~~~i~yE~i~p~d----~fg~-~ 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE----RAMFINYEQVNMGD----RFGQ-I 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS----SEEEEEEEECCTTS----HHHH-H
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC----CceEEEEeccCCCC----HHHH-H
Confidence 999761 1 1 1346777789999999999999999999887 57778888885432 1110 0
Q ss_pred hhcchhhhhh-cCC--eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 231 LCFDILMVSL-FRG--KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 231 ~~~d~~~~~~-~~~--~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
....+.-.-. ..+ ...+.++..+.|.++||+.++..++
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0000100000 001 2237788899999999998877654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.6e-05 Score=63.75 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=69.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC-CC--ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA-IP--QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~~--~~D~v~~~~vlh~~~~ 187 (279)
+.++.++||+||++|.++..++++ +.+++++|..++-...... ++|+++.+|.+.. .+ .+|+|++-.+. ++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~-~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDT-GQVTWLREDGFKFRPTRSNISWMVCDMVE---KP 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTT-TCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccC-CCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence 567899999999999999999987 6799999985544444444 7999999999883 22 49999986654 45
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.....++.+...... .++.|+.+.
T Consensus 283 ~~~~~l~~~wl~~~~---~~~aI~~lK 306 (375)
T 4auk_A 283 AKVAALMAQWLVNGW---CRETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHHTTS---CSEEEEEEE
T ss_pred HHhHHHHHHHHhccc---cceEEEEEE
Confidence 556666666655554 345554444
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.3e-06 Score=72.43 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=70.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc------CCCC-eEEeeCCCCC--C--CC-ccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG------TNDN-LDFLGGNMFE--A--IP-QANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~--~--~~-~~D~v~ 177 (279)
.++.+|||++||+|.+++.++++.++ .+++.+|+ +..++.+++ ..++ ++++.+|..+ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998765 57999999 888887764 3345 9999999865 2 22 599998
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+-= . . ....++..+.+.|+ |||.|++.-
T Consensus 131 lDP--~--g--~~~~~l~~a~~~Lk---~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--G--TPVPFIESVALSMK---RGGILSLTA 158 (392)
T ss_dssp ECC--S--S--CCHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ECC--C--c--CHHHHHHHHHHHhC---CCCEEEEEe
Confidence 743 1 1 11357888999999 688666544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=72.45 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=72.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC------------------CCeEEEeeC-hhHHhhccc-----CCC-----CeEEe
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP------------------DIKCTVFDL-PHVVDNLQG-----TND-----NLDFL 162 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----~~~-----ri~~~ 162 (279)
.+..+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. ... ++.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 3467999999999999998877532 247999999 888887763 112 27889
Q ss_pred eCCCCC-C---CCccceeeehhhhccCC------------hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 163 GGNMFE-A---IPQANAVLLKWILHNWN------------DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 163 ~~d~~~-~---~~~~D~v~~~~vlh~~~------------~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+|.+. + ...||+|++.=.+.... .+.-..++.++.+.|+ |||++.++-
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk---~gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH---PGGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC---CCCEEEEEe
Confidence 999887 3 23699999854333211 1122478999999999 799988864
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.5e-05 Score=62.17 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=63.6
Q ss_pred hhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh-hHHhhcc---cCC-CCeEEeeC-CCCC-CCCccceeeehhhh
Q 023625 110 VFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP-HVVDNLQ---GTN-DNLDFLGG-NMFE-AIPQANAVLLKWIL 182 (279)
Q Consensus 110 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~---~~~-~ri~~~~~-d~~~-~~~~~D~v~~~~vl 182 (279)
.+.+..+|||+||++|.++..++++.+-..++++|+. ....... ... +-+.+..+ |++. +...+|+|++-..-
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence 3577889999999999999999987666678888873 2211111 111 22344433 5443 22359999985444
Q ss_pred c----cCChhHHHHHHHHHHHhCCCCCCC-cEEEE
Q 023625 183 H----NWNDEESVKLLKKCKEAIPSKDEG-GKVII 212 (279)
Q Consensus 183 h----~~~~~~~~~~L~~~~~~L~~~~pg-G~lli 212 (279)
+ .........+|.-+.+.|+ || |.+++
T Consensus 158 nsG~~~~D~~rs~~LL~~A~~~Lk---pG~G~FV~ 189 (300)
T 3eld_A 158 SSSNPLVERDRTMKVLENFERWKH---VNTENFCV 189 (300)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCC---TTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc---CCCCcEEE
Confidence 3 1111123566888889999 78 87776
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=67.28 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCC---CCeEEEeeC-hhHHhhc--cc------C---CCCeEEeeCCCCCC----CCcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFP---DIKCTVFDL-PHVVDNL--QG------T---NDNLDFLGGNMFEA----IPQA 173 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~------~---~~ri~~~~~d~~~~----~~~~ 173 (279)
+..+|+|.|||+|.++.++++..+ ..+++++|+ +.+++.| +. . .+...+...|+..+ ...|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999999876 357999999 7777777 21 1 12235666777662 2359
Q ss_pred ceeeehhhhcc-CCh-h-------------------------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 174 NAVLLKWILHN-WND-E-------------------------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 174 D~v~~~~vlh~-~~~-~-------------------------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|+|++.=..-. +.. . -...++.++.+.|+ |||++.++-
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLK---pGGrLAfIl 465 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQ---DGTVISAIM 465 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSC---TTCEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcC---CCcEEEEEE
Confidence 99988432210 111 1 12347888999999 799988754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00033 Score=55.23 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=62.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C--CCCeEEeeCCCCCC-------------
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T--NDNLDFLGGNMFEA------------- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~d~~~~------------- 169 (279)
.+.++|||+|+| .-+..+++ .++.+++.+|. ++..+.|++ . .++|+++.+|..+-
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 456899999985 45555555 45789999998 777777763 3 56899999995421
Q ss_pred -----------C---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 170 -----------I---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 170 -----------~---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
. ..||+|++-.-- ....+..+.+.|+ |||.| ++|.+.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~---~GG~I-v~DNv~ 156 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSIT---RPVTL-LFDDYS 156 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCS---SCEEE-EETTGG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcC---CCeEE-EEeCCc
Confidence 1 249999985421 1244555668899 68866 555543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=5.6e-05 Score=65.15 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-------------CCCeEEeeCCCCCC-------CC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-------------NDNLDFLGGNMFEA-------IP 171 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~ri~~~~~d~~~~-------~~ 171 (279)
+.++||=||+|.|..+.++++. |..+++++|+ |.+++.+++. .+|++++.+|...- ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999985 5578999999 8999887741 25789999997641 12
Q ss_pred ccceeeehhhhcc-------CCh-hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHN-------WND-EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~-------~~~-~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|+.-..-.. ... .-...+++.++++|+ |||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~---p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK---QDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE---EEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcC---CCCEEEEe
Confidence 5999997421100 001 113577899999999 68876653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.8e-05 Score=65.29 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=53.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-------CCCeEEeeCCCCCC--C---Cccceeee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-------NDNLDFLGGNMFEA--I---PQANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~ri~~~~~d~~~~--~---~~~D~v~~ 178 (279)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.|+.. .++++++.+|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999999887 468999999 8888877631 15799999999873 2 25999998
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00016 Score=59.70 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=59.4
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-CCeEEeeCCCCC-C--C---
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-DNLDFLGGNMFE-A--I--- 170 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~~-~--~--- 170 (279)
..+.+++.+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++.. +|++++.+||.+ + .
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 3456777665 567789999999999999999998 679999999 88888876532 589999999865 2 1
Q ss_pred --Cccceeee
Q 023625 171 --PQANAVLL 178 (279)
Q Consensus 171 --~~~D~v~~ 178 (279)
..+|.|++
T Consensus 86 g~~~vDgIL~ 95 (285)
T 1wg8_A 86 GVERVDGILA 95 (285)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCcCEEEe
Confidence 24676665
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.51 E-value=7.8e-05 Score=61.30 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=52.8
Q ss_pred hCCC--CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH-------Hhhccc-------CCCCeEEeeCCCCC--C-C
Q 023625 111 FEGL--KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV-------VDNLQG-------TNDNLDFLGGNMFE--A-I 170 (279)
Q Consensus 111 ~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~~~ri~~~~~d~~~--~-~ 170 (279)
..+. .+|||++||+|..+..++++ +.+++++|. +.+ ++.++. ...|++++.+|..+ + .
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 568999999 644 333321 11579999999865 2 2
Q ss_pred C-ccceeeehhhhcc
Q 023625 171 P-QANAVLLKWILHN 184 (279)
Q Consensus 171 ~-~~D~v~~~~vlh~ 184 (279)
+ .||+|++.-..+.
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999998655543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00011 Score=67.07 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCC---------------CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C-
Q 023625 114 LKSLVDVAGGTGIMARAIATAFP---------------DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A- 169 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~- 169 (279)
..+|+|.+||+|.++..+++..+ ..++.++|+ +.++..|+. ...++.+..+|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999988765432 467999999 888887763 22345558899876 3
Q ss_pred CC--ccceeeehhhhc--cCChh-------------------------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 170 IP--QANAVLLKWILH--NWNDE-------------------------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 170 ~~--~~D~v~~~~vlh--~~~~~-------------------------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+ .||+|++.=.+. .|..+ .-..++.++.+.|+ |||++.++-
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk---~gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA---PTGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc---cCceEEEEe
Confidence 22 599999842222 12111 11358899999999 799987764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00041 Score=56.17 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhH--HhhcccCCCCe---EEeeC-CCCCCCC-cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHV--VDNLQGTNDNL---DFLGG-NMFEAIP-QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~~~~ri---~~~~~-d~~~~~~-~~ 173 (279)
.++.+.+ .+.+..+|||+||+.|.++...++.-+--.+.+.++... +.........+ .|+.+ |+++..+ .+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 3455553 478899999999999999998888521112234443211 11111111344 55657 9987433 59
Q ss_pred ceeeehhhhc---cCChh-HHHHHHHHHHHhCCCCCCCc-EEEE
Q 023625 174 NAVLLKWILH---NWNDE-ESVKLLKKCKEAIPSKDEGG-KVII 212 (279)
Q Consensus 174 D~v~~~~vlh---~~~~~-~~~~~L~~~~~~L~~~~pgG-~lli 212 (279)
|+|++-..-. ...|. ....+|.-+.+.|+ ||| .+++
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk---~gG~~Fvv 181 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLS---RGPKEFCI 181 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT---TCCSEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhh---cCCcEEEE
Confidence 9999743221 01111 12235767778899 688 6655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=5.7e-05 Score=80.11 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC-----CeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCCC---CC-ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD-----IKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFEA---IP-QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~---~~-~~D~v~~~~ 180 (279)
+..+||+||+|+|..+..+++.... .+++..|+ +...+.+++. .-.++...-|..++ .+ +||+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999887777766532 36888898 6666666642 11233322233332 22 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+||.-++ ....|+++++.|+ |||++++.+......-.. ...+.+-. ........+.++|.++|+++||
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~---p~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLK---EGGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred ccccccc--HHHHHHHHHHhcC---CCcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 9995444 4578999999999 799999877532110000 00000000 0001122367789999999999
Q ss_pred ceeEEEe
Q 023625 261 SHYKITP 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
+.+.+..
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9876643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=53.04 Aligned_cols=106 Identities=10% Similarity=0.079 Sum_probs=68.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc---cC-CCCeEEeeC-CCCC-CCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ---GT-NDNLDFLGG-NMFE-AIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~-~~ri~~~~~-d~~~-~~~~~ 173 (279)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ +.-.+.-+ .. -..++|..+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 34555553 67778999999999999998888776668999998 33332211 11 257899999 9765 33359
Q ss_pred ceeeehhhhccCC---hh-HHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 174 NAVLLKWILHNWN---DE-ESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 174 D~v~~~~vlh~~~---~~-~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
|.+++--.=-.=+ ++ ...++|.-+.+.|+ + |.++|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~---~-~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLK---N-NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCS---S-CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhcc---c-CCEEE
Confidence 9988733221111 11 22456777788898 5 55554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=59.27 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCC-CC-----ccce
Q 023625 113 GLKSLVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEA-IP-----QANA 175 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~-~~-----~~D~ 175 (279)
...+|+|.+||+|.++..+++.. +..++.++|+ +.+...|+. .. +++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999998885 3578999999 888877763 11 4678999998863 22 4999
Q ss_pred eeehhhh-ccCC------------------h--hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 176 VLLKWIL-HNWN------------------D--EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 176 v~~~~vl-h~~~------------------~--~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|++.=.. ..|. + ..-..++.++.+.|++ |||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~--~gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQ--DNGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCT--TTCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCC--CceeEEEEe
Confidence 9974111 1111 0 0013578999999993 489887654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0066 Score=51.20 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=93.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCC------Cc----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAI------PQ---- 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~~---- 172 (279)
.+...||++|||-=.....+. .| +++++-+|.|.+++..++ ..++..++..|+.+.+ .+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 345689999999988876665 24 488999999999876552 2467889999997631 11
Q ss_pred -cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc-c-hhhhh-----h-cCC
Q 023625 173 -ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF-D-ILMVS-----L-FRG 243 (279)
Q Consensus 173 -~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d-~~~~~-----~-~~~ 243 (279)
.-++++-.+||.+++++...+|+.+.+.+. ||+. ++.|.+.++. .... ....... . +.-.. . .+-
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~---~gs~-l~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~~l~~~ 252 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSA---VGSR-IAVETSPLHG-DEWR-EQMQLRFRRVSDALGFEQAVDVQEL 252 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCC---TTCE-EEEECCCTTC-SHHH-HHHHHHHHHHHC-----------CC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCC---CCeE-EEEEecCCCC-cchh-HHHHHHHHHHHHHcCCcCCCCcccc
Confidence 336677889999999999999999999887 4654 5556655432 1100 0000000 0 00000 0 011
Q ss_pred ee-CC-HHHHHHHHHHCCCcee
Q 023625 244 KE-RS-VDDWKKLFLAAGFSHY 263 (279)
Q Consensus 244 ~~-r~-~~e~~~ll~~aGf~~~ 263 (279)
.. ++ .++..++|.+.||+.+
T Consensus 253 ~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 253 IYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccCCCChHHHHHHHHHCcCccc
Confidence 11 25 6789999999999977
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=54.25 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=55.8
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCC
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFE 168 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~ 168 (279)
...++++.+. ..++..+||..+|.|..+.+++++. |+.+++++|. +.+++.++.+ .+|++++.++|.+
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3466777765 5678899999999999999999985 7889999999 8888888643 4688888888754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0028 Score=52.27 Aligned_cols=106 Identities=12% Similarity=0.182 Sum_probs=65.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh---cccCC-CCeEEeeC-CCCC-CCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN---LQGTN-DNLDFLGG-NMFE-AIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~~-~ri~~~~~-d~~~-~~~~~ 173 (279)
..+.+.+. +.+..+|||+||++|.++...+....-.++.++|+ ..-.+. .+++. .-|.+..+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 34444443 66778999999999999998887766557999998 332221 11221 23788888 8765 32348
Q ss_pred ceeeehhhhccCC----hh-HHHHHHHHHHHhCCCCCCC-cEEEE
Q 023625 174 NAVLLKWILHNWN----DE-ESVKLLKKCKEAIPSKDEG-GKVII 212 (279)
Q Consensus 174 D~v~~~~vlh~~~----~~-~~~~~L~~~~~~L~~~~pg-G~lli 212 (279)
|++++--. ---+ ++ ...++|.-+.+.|+ +| |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~---~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLH---RGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHT---TCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhc---cCCCcEEE
Confidence 88876322 1111 11 22446666678887 35 55554
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0022 Score=53.21 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=65.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-----CCCeEEEeeC-hh--------------------------HHhhccc-----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-----PDIKCTVFDL-PH--------------------------VVDNLQG----- 154 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 154 (279)
...+.|||+|+..|..++.+++.. ++.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999998887754 4778999994 21 1122221
Q ss_pred -C-CCCeEEeeCCCCC--C-CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 155 -T-NDNLDFLGGNMFE--A-IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 155 -~-~~ri~~~~~d~~~--~-~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
. .++|+++.||+.+ + .+ .+|++++-.-.+ +.....|..+.+.|+ |||.|++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~---pGGiIv~ 242 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVS---VGGYVIV 242 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEE---EEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcC---CCEEEEE
Confidence 2 3899999999976 2 32 489888854221 234678999999999 6775544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.055 Score=50.80 Aligned_cols=149 Identities=10% Similarity=0.106 Sum_probs=100.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCC--------CCeEEEeeChhHHhhccc-----------C------------------
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFP--------DIKCTVFDLPHVVDNLQG-----------T------------------ 155 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~-----------~------------------ 155 (279)
+...||-+|||.=.....|...+| +++++-+|.|++++.=++ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988765 678888899988754221 0
Q ss_pred CCCeEEeeCCCCCC--C-----------Cc-cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 023625 156 NDNLDFLGGNMFEA--I-----------PQ-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221 (279)
Q Consensus 156 ~~ri~~~~~d~~~~--~-----------~~-~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~ 221 (279)
.++..+++.|+.+. + ++ .-++++-.+|..++++++.++|+.+.+ +. ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~~----~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-ME----NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-SS----SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-CC----CceEEEEEeecCCCC
Confidence 14889999999862 1 11 235667789999999999999999985 44 678888898766543
Q ss_pred CCchhhhhhhhcchhhhh-hcC--CeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 222 QDKESMETQLCFDILMVS-LFR--GKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 222 ~~~~~~~~~~~~d~~~~~-~~~--~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.. ++... ....+...- ... ....+.++..+.|.+.||+.+...++
T Consensus 262 ~d-~f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FE-PFSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TS-HHHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CC-hHHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 33 11110 011110000 000 12337899999999999987665543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.009 Score=51.21 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--CCCCeEEeeCCCCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--TNDNLDFLGGNMFE 168 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~ 168 (279)
...|||||.|.|.++..|+++....+++++++ +..+...++ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 57899999999999999999754447888887 555544432 23789999999975
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.02 Score=49.24 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=73.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------CCCCeEEeeCCCCC-C--CC-ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------TNDNLDFLGGNMFE-A--IP-QAN 174 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~-~--~~-~~D 174 (279)
..++.+|||+-+|.|.=+.++++..+.-.++..|+ +.-+...++ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 46678999999999999999999877777899998 544443321 23578888888765 1 23 599
Q ss_pred eeeeh--------hhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 175 AVLLK--------WIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 175 ~v~~~--------~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.|++- .++ ..+..++ -.++|.++.+.++ |||+|+...-.+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk---pGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK---PGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE---EEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEEeCCCch
Confidence 99862 111 2222222 2478999999999 79988876654443
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.012 Score=48.60 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=60.2
Q ss_pred hCCCCEEEEecC------CccHHHHHHHHHCCC-CeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CC-Cccceeeehhh
Q 023625 111 FEGLKSLVDVAG------GTGIMARAIATAFPD-IKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AI-PQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~-~~~D~v~~~~v 181 (279)
.+.+.+|||+|+ .+|.+ .+.+..|. ..++..|+.++...+ + .++.||+.+ .. ..+|+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~--~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D--STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S--EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C--eEEEccccccccCCCCCEEEecCC
Confidence 356789999995 78884 44555786 689999985443211 2 458899765 22 35999987221
Q ss_pred -------hccC--ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 182 -------LHNW--NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 182 -------lh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
-++- ...-+..+|.=+.+.|+ |||.+++
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lk---pGGsFvV 215 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLA---LGGSIAV 215 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEE---EEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCc---CCCEEEE
Confidence 1111 22246677888888999 7998876
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=49.16 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 154 (279)
.++..|||++||+|..+.++++. +.+++++|+ +.+++.|++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 46789999999999999998876 468999999 888887763
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.026 Score=47.22 Aligned_cols=130 Identities=21% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCCEEEEecCCccHHHHHH----HHHCCCCe--EEEeeC-h--------hHHhh-cc-------c-CCCCe--EEeeCCC
Q 023625 113 GLKSLVDVAGGTGIMARAI----ATAFPDIK--CTVFDL-P--------HVVDN-LQ-------G-TNDNL--DFLGGNM 166 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l----~~~~p~~~--~~~~D~-~--------~~~~~-a~-------~-~~~ri--~~~~~d~ 166 (279)
+.-+|+|+|=|+|...... .+..|+.+ ++.++. + +.... .+ . ...++ ++.-||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 3458999999999876543 34567765 455553 1 10000 00 0 12344 4677887
Q ss_pred CC---CCC--ccceeeehhhhccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 167 FE---AIP--QANAVLLKWILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 167 ~~---~~~--~~D~v~~~~vlh~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
.+ .++ .+|++++-..--.-+++ -...+++.+++.++ |||++.-. .
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~---pgg~laTY----t---------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERID---EKGYWVSY----S---------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEE---EEEEEEES----C----------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhC---CCcEEEEE----e----------------------
Confidence 55 223 48988873311111111 12368999999999 68866421 0
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEE
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEA 277 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 277 (279)
....+++-|++|||++.++--.++-.-++.+
T Consensus 227 ------aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred ------CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1246788999999998777655544444444
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.21 Score=45.19 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-------------CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CC-
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-------------PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AI- 170 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~- 170 (279)
....+|+|-.||+|.++....+.. ....+.++|+ +.+...|+. ..+...+..+|.+. +.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 345699999999999998776532 1346899999 777776662 12345677788765 31
Q ss_pred -----Cccceeeehhhhc---------cCC-----hhHHHHHHHHHHHhCCCC----CCCcEEEEEe
Q 023625 171 -----PQANAVLLKWILH---------NWN-----DEESVKLLKKCKEAIPSK----DEGGKVIIID 214 (279)
Q Consensus 171 -----~~~D~v~~~~vlh---------~~~-----~~~~~~~L~~~~~~L~~~----~pgG~lli~e 214 (279)
..||+|+..=.+- .++ .+.....+..+.+.|++. .|||++.++-
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 1499998743321 111 112235677777777520 1489887764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.22 Score=42.45 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=74.6
Q ss_pred CEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC----CC--ccceeeehhhhccCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA----IP--QANAVLLKWILHNWN 186 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~--~~D~v~~~~vlh~~~ 186 (279)
.+++|+-||.|.++..+.++.-.. .+..+|. +..++..+..-+...++.+|+.+- .+ .+|+++..-....++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 589999999999999999885322 4778898 777776665434556778888762 22 479998865543333
Q ss_pred hh--------HHHHHHHHHHHhCCCCCCC--cEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHH
Q 023625 187 DE--------ESVKLLKKCKEAIPSKDEG--GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 187 ~~--------~~~~~L~~~~~~L~~~~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~ 256 (279)
.. ..-.++.++.+.++. -. -+++++|.+..=. + + .+.+.+.+.|+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~--~~~~P~~~~~ENV~~l~-------------~--------~--~~~~~i~~~l~ 137 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPR--LQKLPKYILLENVKGFE-------------V--------S--STRDLLIQTIE 137 (343)
T ss_dssp -------------CHHHHHHHHGGG--CSSCCSEEEEEEETTGG-------------G--------S--HHHHHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHH--hcCCCCEEEEeCCcccc-------------C--------H--HHHHHHHHHHH
Confidence 21 111244434444432 11 3577777764210 0 0 14567888889
Q ss_pred HCCCceeE
Q 023625 257 AAGFSHYK 264 (279)
Q Consensus 257 ~aGf~~~~ 264 (279)
+.||.+..
T Consensus 138 ~~GY~v~~ 145 (343)
T 1g55_A 138 NCGFQYQE 145 (343)
T ss_dssp HTTEEEEE
T ss_pred HCCCeeEE
Confidence 99998654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.69 E-value=0.2 Score=40.76 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 154 (279)
.++..|||..||+|..+.+..+. +.+++++|+ +..++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 56789999999999999998876 568999999 777776653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.2 Score=40.81 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCEEEEecCCccHHHHHHHHH-------CCCCeEEEeeC----hhH------------------------Hhhc------
Q 023625 114 LKSLVDVAGGTGIMARAIATA-------FPDIKCTVFDL----PHV------------------------VDNL------ 152 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~a------ 152 (279)
...|+|+|+-.|..+..+++. .++-++.++|. |+. ++..
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 569999999999988886652 45678999993 211 0100
Q ss_pred -cc---CCCCeEEeeCCCCCC-------CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 153 -QG---TNDNLDFLGGNMFEA-------IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 153 -~~---~~~ri~~~~~d~~~~-------~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+. ..++|+++.|++.+. .+ .+|++++-.=. -+.....|..+.+.|+ |||.|++-|
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~---~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLT---KGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEE---EEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhC---CCcEEEEcC
Confidence 01 147899999998752 12 37888774421 1334678999999999 577655533
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=90.66 E-value=0.34 Score=42.31 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=42.0
Q ss_pred CCCCEEEEecCCccHHHHHHH-HHCCC-CeEEEeeC-hhHHhhccc--------CC-CCeEEeeCCCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIA-TAFPD-IKCTVFDL-PHVVDNLQG--------TN-DNLDFLGGNMF 167 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~--------~~-~ri~~~~~d~~ 167 (279)
++...++|||++.|.++..++ +..+. .+++.++. |...+..++ .. ++++++..-+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 567899999999999999988 66765 79999998 776665442 12 56776665443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=2 Score=35.91 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChhH
Q 023625 114 LKSLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 114 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~ 189 (279)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+. .-+.-...|..+ -..++|+|++. .+++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~~~~~~~~~~~~~~~aDvVila-----vp~~~ 106 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKVEDFSPDFVMLS-----SPVRT 106 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCTTGGGGGCCSEEEEC-----SCGGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCcchhcCCHHHHhhccCCEEEEe-----CCHHH
Confidence 36888998764 334445555433338999998 6677766653 212112233333 34468999885 35566
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+++++.+.++
T Consensus 107 ~~~vl~~l~~~l~ 119 (314)
T 3ggo_A 107 FREIAKKLSYILS 119 (314)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHhhccC
Confidence 7788999999998
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=87.32 E-value=1.7 Score=37.55 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHC-------CCCeEEEeeChhHHhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAF-------PDIKCTVFDLPHVVDNL 152 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~~~a 152 (279)
..-.|+|+|+|+|.++..+++.. ..+++++++..+.+...
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~ 126 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK 126 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHH
Confidence 34579999999999999888652 34689999995555433
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=86.85 E-value=2.2 Score=36.19 Aligned_cols=94 Identities=12% Similarity=0.161 Sum_probs=59.8
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC-----CCCCCC-----Cccceeee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG-----NMFEAI-----PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-----d~~~~~-----~~~D~v~~ 178 (279)
..++.+||-+|+|. |.++..+++...-.++++.|. ++-.+.+++......+-.. ++.+.. .++|+++-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56678999999875 888999998864338999997 6667777764222111111 111100 24788875
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.- .. ...+..+.++|+ |+|+++++..
T Consensus 249 ~~-----g~---~~~~~~~~~~l~---~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CT-----GA---EASIQAGIYATR---SGGTLVLVGL 274 (356)
T ss_dssp CS-----CC---HHHHHHHHHHSC---TTCEEEECSC
T ss_pred CC-----CC---hHHHHHHHHHhc---CCCEEEEEec
Confidence 32 11 134677788899 7999988754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.56 E-value=2.1 Score=36.08 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=76.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCe-E-EEeeC-hhHHhhcccCCCCeEEeeCCCCC-C---CC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIK-C-TVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A---IP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~--~~D~v~~~~vlh 183 (279)
..-+++|+=||.|.++..+.++.-..+ + ...|. +..++..+..-+.. +..+|+.+ . ++ .+|+++..-...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 345899999999999999998753234 4 58898 66665544320111 56677765 2 23 479988765544
Q ss_pred cC-----------ChhHHHHHHHHHHH-hCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 184 NW-----------NDEESVKLLKKCKE-AIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 184 ~~-----------~~~~~~~~L~~~~~-~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.+ .|+ .-.++.++.+ .++....--+++++|.+..=. . + .+.+.+
T Consensus 88 ~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~-------------~--------~--~~~~~i 143 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFK-------------E--------S--LVFKEI 143 (327)
T ss_dssp TCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG-------------G--------S--HHHHHH
T ss_pred CcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhc-------------C--------h--HHHHHH
Confidence 44 232 2245555555 443100024688888764210 0 1 145678
Q ss_pred HHHHHHCCCceeEE
Q 023625 252 KKLFLAAGFSHYKI 265 (279)
Q Consensus 252 ~~ll~~aGf~~~~~ 265 (279)
.+.|++.|+.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88899999986533
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=86.23 E-value=5.2 Score=32.60 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=49.9
Q ss_pred CEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 115 KSLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 115 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
.+|.=||+|. +.++..+++..+..++++.|. ++..+.+.+. ..+.....|..+....+|+|++. .++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIVDEATADFKVFAALADVIILA-----VPIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSCSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCcccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence 5788888775 334445555544678999998 6666655432 11111223333223468998884 3555567
Q ss_pred HHHHHHHHh-CC
Q 023625 192 KLLKKCKEA-IP 202 (279)
Q Consensus 192 ~~L~~~~~~-L~ 202 (279)
.+++.+.+. ++
T Consensus 81 ~v~~~l~~~~l~ 92 (290)
T 3b1f_A 81 DFIKILADLDLK 92 (290)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhcCCC
Confidence 788888887 87
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=85.93 E-value=3.5 Score=35.40 Aligned_cols=97 Identities=9% Similarity=0.079 Sum_probs=62.5
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCCCCeEEeeCCCCCC----C-------Cccceeeehhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA----I-------PQANAVLLKWI 181 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~-------~~~D~v~~~~v 181 (279)
-+++|+=||.|.++..+.++. .+ +.++|. +..++..+..-+...++.+|+.+- + +.+|+++..-.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 479999999999999999884 44 558888 666665554334567788887651 1 35888887655
Q ss_pred hccCC-------hhHHHHHHHH---HHHhCCCCCCCcEEEEEeeecC
Q 023625 182 LHNWN-------DEESVKLLKK---CKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 182 lh~~~-------~~~~~~~L~~---~~~~L~~~~pgG~lli~e~~~~ 218 (279)
...++ ++..-.++.+ +.+.++ | +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~---P--~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQ---P--LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHC---C--SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhC---C--CEEEEecchH
Confidence 44443 1112233333 334446 3 5788887753
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=85.45 E-value=2.9 Score=34.34 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=67.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC------CC-Cccceeeehhhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE------AI-PQANAVLLKWIL 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~------~~-~~~D~v~~~~vl 182 (279)
...+||+=+|||.++++.+. +.-+++.+|+ +..++..++. .++++++..|.++ +. +.+|+|++-=..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999998 4468999999 7777766642 4689999999754 11 149999983222
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.. .++..++++.+.+..+-. |+|.++|.=++.+
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~-~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKF-STGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHC-TTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccC-CCeEEEEEEeccc
Confidence 21 123445555554432111 5898888776654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.65 E-value=4.5 Score=30.04 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=30.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
-..-|+|+|=|+|..=-+|.+.+|+-++.++|.
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 357899999999999999999999999999995
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=84.12 E-value=3.8 Score=31.52 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=56.4
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC----CccceeeehhhhccCChh
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI----PQANAVLLKWILHNWNDE 188 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~----~~~D~v~~~~vlh~~~~~ 188 (279)
+||=. ||+|..+.+++++. .+.++++++. +...+... .+++++.+|+.++. .+.|+++.......-..+
T Consensus 2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 45544 45666666666544 3468889987 54444332 67899999998742 357888765433222222
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
......+++.++++.. ..++++++..
T Consensus 78 ~~~~~~~~l~~a~~~~-~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGT-VSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSC-CSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 2345566666677642 2467777654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=83.85 E-value=7.2 Score=30.02 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=59.1
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC----CCccceeeehhhhc--cCC
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA----IPQANAVLLKWILH--NWN 186 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~~~D~v~~~~vlh--~~~ 186 (279)
+||=. ||+|..+.+++++. .+.++++++. +....... ..+++++.+|+.++ ..+.|+|+...... ...
T Consensus 2 kilVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 2 KIAVL-GATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR 78 (224)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred EEEEE-cCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--CCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence 34444 45677766666654 3568889987 44443322 35899999999874 23578887654331 111
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
........+++.++++. .|++++++..
T Consensus 79 ~~~n~~~~~~l~~a~~~--~~~~~v~~SS 105 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRN--SDTLAVFILG 105 (224)
T ss_dssp THHHHHHHHHHHHTCTT--CCCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHH--cCCcEEEEec
Confidence 23355667888888875 3577877753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.72 E-value=2.1 Score=36.17 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=60.2
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC-ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP-QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~ 187 (279)
..+..+||-+|+|. |.++..+++.. ++++++.|. ++-.+.+++......+ .|. +... ++|+++-.-- .
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~--~~~-~~~~~~~D~vid~~g-----~ 244 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY--TDP-KQCKEELDFIISTIP-----T 244 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE--SSG-GGCCSCEEEEEECCC-----S
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec--CCH-HHHhcCCCEEEECCC-----c
Confidence 56678898899765 88888999876 569999997 7777777765322222 221 1122 6888875321 1
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+ ..+..+.+.|+ |+|+++++..
T Consensus 245 ~---~~~~~~~~~l~---~~G~iv~~G~ 266 (348)
T 3two_A 245 H---YDLKDYLKLLT---YNGDLALVGL 266 (348)
T ss_dssp C---CCHHHHHTTEE---EEEEEEECCC
T ss_pred H---HHHHHHHHHHh---cCCEEEEECC
Confidence 1 13667778899 7999998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.48 E-value=1.5 Score=37.37 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCEEEEec--CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC-CCCC---CC--Cccceeeehhhhc
Q 023625 113 GLKSLVDVA--GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG-NMFE---AI--PQANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-d~~~---~~--~~~D~v~~~~vlh 183 (279)
+..+||=+| |+.|.++..+++.....++++.|. ++-.+.+++......+-.. |+.+ .. .++|+++-.-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 566888887 567999999999866789999998 7777777764222111111 1111 11 2488877532
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ...+..+.++|+ ++|+++++.
T Consensus 248 --g~---~~~~~~~~~~l~---~~G~iv~~g 270 (363)
T 4dvj_A 248 --HT---DKHAAEIADLIA---PQGRFCLID 270 (363)
T ss_dssp --CH---HHHHHHHHHHSC---TTCEEEECS
T ss_pred --Cc---hhhHHHHHHHhc---CCCEEEEEC
Confidence 11 245778888999 799999873
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.43 E-value=2.5 Score=35.98 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=60.2
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee--CCCCCC----CC-ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG--GNMFEA----IP-QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~----~~-~~D~v~~~~v 181 (279)
..+..+||-+|+|. |..+..+++...-.++++.|. ++-.+.+++......+-. .|+.+. .+ ++|+++-.--
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 45678999999876 888889988763336889987 777777765422111111 111110 11 4888875321
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
. ...++.+.+.|+ ++|+++++...
T Consensus 268 -----~---~~~~~~~~~~l~---~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALG---ILGKIAVVGAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEE---EEEEEEECCCC
T ss_pred -----C---HHHHHHHHHHHh---cCCEEEEeCCC
Confidence 1 245778888999 79999887643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=83.13 E-value=2.5 Score=35.48 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=60.7
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC--CCCC----CCccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN--MFEA----IPQANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d--~~~~----~~~~D~v~~~~vl 182 (279)
..+..+||-.|+|. |..+..+++.. ++++++.|. ++-.+.+++......+-..+ +.+. .+++|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56678888899764 99999999986 569999998 77777777653222221111 1110 024777765321
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
. ...++.+.++|+ |+|+++++..
T Consensus 242 ---~----~~~~~~~~~~l~---~~G~iv~~G~ 264 (340)
T 3s2e_A 242 ---S----PKAFSQAIGMVR---RGGTIALNGL 264 (340)
T ss_dssp ---C----HHHHHHHHHHEE---EEEEEEECSC
T ss_pred ---C----HHHHHHHHHHhc---cCCEEEEeCC
Confidence 1 245778888899 7999987653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=82.79 E-value=1.8 Score=37.37 Aligned_cols=101 Identities=15% Similarity=0.035 Sum_probs=62.6
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC---CC-CCC-----CC-ccceeee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG---NM-FEA-----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---d~-~~~-----~~-~~D~v~~ 178 (279)
..+..+||-+|+|. |.++..+++...-.++++.|. ++-++.+++... +++.. |+ .+. .. ++|+++-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF--ETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC--EEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--cEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 56778999999876 889999998764338999997 777777776532 23221 22 110 01 4888875
Q ss_pred hhhhccC-C-h----hHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 179 KWILHNW-N-D----EESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh~~-~-~----~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.---... . + ......++.+.++|+ ++|+++++...
T Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~---~gG~iv~~G~~ 301 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETPNGALNSLFDVVR---AGGAIGIPGIY 301 (398)
T ss_dssp CSCTTCBCSGGGTTSBCTTHHHHHHHHHEE---EEEEEECCSCC
T ss_pred CCCCccccccccccccccHHHHHHHHHHHh---cCCEEEEeccc
Confidence 4321100 0 0 001135777888899 79999876543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=1.3 Score=41.43 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=25.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHC-------CC-----CeEEEeeC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAF-------PD-----IKCTVFDL 145 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~ 145 (279)
+.-+|+|+|-|+|......++.+ |. ++++.++.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 102 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEK 102 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeC
Confidence 34589999999999998887753 32 56888875
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.11 E-value=11 Score=26.42 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=46.5
Q ss_pred CEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhcc
Q 023625 115 KSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHN 184 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~ 184 (279)
.+|+=+|+ |..+..+++.. .+.+++++|. +..++..+.. ..+.+..+|..++ ..++|+++..-
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-cCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 47888876 55555555433 2467999998 6655544421 2456677776542 23588887752
Q ss_pred CChhHHHHHHHHHHHhCC
Q 023625 185 WNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~ 202 (279)
++++....+..+.+.++
T Consensus 78 -~~~~~~~~~~~~~~~~~ 94 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYG 94 (140)
T ss_dssp -SCHHHHHHHHHHHHHTT
T ss_pred -CCchHHHHHHHHHHHcC
Confidence 23333344555566677
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=81.98 E-value=3.2 Score=31.67 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=56.8
Q ss_pred hCCCCEEEEec--CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC---------C--Ccccee
Q 023625 111 FEGLKSLVDVA--GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA---------I--PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~---------~--~~~D~v 176 (279)
..+..+||..| +|.|..+..+++.. +.++++.|. ++..+.+++......+ |..++ . .++|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVG---DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEE---ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEe---eCCcHHHHHHHHHHhCCCCCeEE
Confidence 45678999999 46677777777764 468999998 5556555543222111 22111 1 147887
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+-.. .. ..++.+.+.|+ |+|+++++...
T Consensus 112 i~~~-----g~----~~~~~~~~~l~---~~G~~v~~g~~ 139 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILA---PGGRFIELGKK 139 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEE---EEEEEEECSCG
T ss_pred EECC-----ch----HHHHHHHHHhc---cCCEEEEEcCC
Confidence 7532 22 34778888999 79999887543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.96 E-value=18 Score=28.93 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=57.4
Q ss_pred CEEEEecCCccHHHHHHHHHCC--CCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHH
Q 023625 115 KSLVDVAGGTGIMARAIATAFP--DIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
.+||=.| + |.++.+++++.- +.++++++. +........ .+++++.+|+.+ ...++|+|+.........+...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~ 81 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--SGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVL 81 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--TTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--CCCeEEEecccccccCCCCEEEECCCccccccHHH
Confidence 5788888 4 998888887652 457888887 443333222 578999999876 3446888876654443333333
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..+++.+.+.-. .-.+++.+..
T Consensus 82 ~~l~~a~~~~~~---~~~~~v~~Ss 103 (286)
T 3ius_A 82 AALGDQIAARAA---QFRWVGYLST 103 (286)
T ss_dssp HHHHHHHHHTGG---GCSEEEEEEE
T ss_pred HHHHHHHHhhcC---CceEEEEeec
Confidence 445555544212 1256665554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.70 E-value=7 Score=33.20 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=58.8
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC----CCCC-----CCccceeeeh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN----MFEA-----IPQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d----~~~~-----~~~~D~v~~~ 179 (279)
..+..+||-+|+|. |..+..+++...-.++++.|. ++-.+.+++......+-..+ +.+. ..++|+++-.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~ 269 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 269 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEEC
Confidence 45678899898764 888888888864337999987 77777776542221111111 1110 0247887753
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCC-cEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEG-GKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pg-G~lli~e~ 215 (279)
- .. ...++.+.++|+ ++ |+++++..
T Consensus 270 ~-----g~---~~~~~~~~~~l~---~~~G~iv~~G~ 295 (374)
T 1cdo_A 270 V-----GN---VGVMRNALESCL---KGWGVSVLVGW 295 (374)
T ss_dssp S-----CC---HHHHHHHHHTBC---TTTCEEEECSC
T ss_pred C-----CC---HHHHHHHHHHhh---cCCcEEEEEcC
Confidence 2 11 235778888999 79 99987654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.64 E-value=7.9 Score=31.32 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=49.0
Q ss_pred EEEEecCCc-cH-HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHH
Q 023625 116 SLVDVAGGT-GI-MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 116 ~vlDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~ 191 (279)
+|.=||+|. |. ++..+.+.....+++++|. ++.++.+++...... ...|..+... ++|+|++. .++....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDE-GTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSE-EESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccc-ccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 577788764 33 2333333322237899998 666666554311111 1223322344 68988874 3556667
Q ss_pred HHHHHHHHhCCCCCCCcEE
Q 023625 192 KLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~l 210 (279)
.+++++.+.++ ++..+
T Consensus 77 ~v~~~l~~~l~---~~~iv 92 (281)
T 2g5c_A 77 EIAKKLSYILS---EDATV 92 (281)
T ss_dssp HHHHHHHHHSC---TTCEE
T ss_pred HHHHHHHhhCC---CCcEE
Confidence 88888888898 56533
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=81.37 E-value=15 Score=28.27 Aligned_cols=136 Identities=9% Similarity=0.083 Sum_probs=69.3
Q ss_pred EEEEecCCccHHHHHHHHHC---CCCeEEEeeC-hh-HHhhcccCCCCeEEeeCCCCCC--C----Cccceeeehhhhcc
Q 023625 116 SLVDVAGGTGIMARAIATAF---PDIKCTVFDL-PH-VVDNLQGTNDNLDFLGGNMFEA--I----PQANAVLLKWILHN 184 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~-~~~~a~~~~~ri~~~~~d~~~~--~----~~~D~v~~~~vlh~ 184 (279)
+||=.| |+|..+.++++++ .+.++++++. +. .++.......++.++.+|+.++ . .+.|+++......
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~- 84 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES- 84 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence 466555 4555555555432 4678999988 44 4333221236899999999863 1 3578887654322
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC-CeeCCHHHHHHHHHHCCCcee
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-GKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+-+...+++.+.+. ..++++.+...........+. ..+... ..+ .-..++.....++++.|+...
T Consensus 85 --n~~~~~~~~~~~~~-----~~~~iv~iSs~~~~~~~~~~~---~~~~~~----~~~~~y~~~K~~~e~~~~~~~i~~~ 150 (221)
T 3r6d_A 85 --GSDMASIVKALSRX-----NIRRVIGVSMAGLSGEFPVAL---EKWTFD----NLPISYVQGERQARNVLRESNLNYT 150 (221)
T ss_dssp --HHHHHHHHHHHHHT-----TCCEEEEEEETTTTSCSCHHH---HHHHHH----TSCHHHHHHHHHHHHHHHHSCSEEE
T ss_pred --ChhHHHHHHHHHhc-----CCCeEEEEeeceecCCCCccc---cccccc----ccccHHHHHHHHHHHHHHhCCCCEE
Confidence 11133344433321 236777666543322211110 000000 000 011145667778888898876
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
-+.+
T Consensus 151 ~vrp 154 (221)
T 3r6d_A 151 ILRL 154 (221)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=81.22 E-value=8 Score=27.48 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeeh
Q 023625 114 LKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLK 179 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~ 179 (279)
..+|+=+|+| .++..+++.. .+.+++++|. ++.++.++.. .+.++.+|..++ ..++|+++..
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 3578888884 4555555543 2568999998 7766666543 577888988763 2358887764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.07 E-value=13 Score=31.20 Aligned_cols=93 Identities=12% Similarity=0.179 Sum_probs=59.0
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC---CCCCC----C-----Ccccee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG---NMFEA----I-----PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---d~~~~----~-----~~~D~v 176 (279)
..+..+||-+|+|. |..+..+++.. ++++++.|. ++-.+.+++......+-.. |+.+. . .++|++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 45678899899765 88888888875 567888987 6777777654222222111 21111 0 247887
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+-.- .. ...++.+.++|+ |+|+++++..
T Consensus 245 id~~-----g~---~~~~~~~~~~l~---~~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCS-----GN---EKCITIGINITR---TGGTLMLVGM 272 (352)
T ss_dssp EECS-----CC---HHHHHHHHHHSC---TTCEEEECSC
T ss_pred EECC-----CC---HHHHHHHHHHHh---cCCEEEEEec
Confidence 7532 11 134677788899 7999988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=80.57 E-value=2.6 Score=35.46 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=62.1
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC-CCCCC----C--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN-MFEAI----P--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d-~~~~~----~--~~D~v~~~~v 181 (279)
..+..+||-+|+|. |.++..+++.....++++.|. ++-.+.+++......+-..+ +.+.. + ++|+++-.-
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~- 247 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV- 247 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC-
Confidence 56678898888765 889999999876789999998 77777777652222221111 11110 1 478877532
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. ...++.+.++|+ ++|+++++..
T Consensus 248 ----G~---~~~~~~~~~~l~---~~G~iv~~G~ 271 (345)
T 3jv7_A 248 ----GA---QSTIDTAQQVVA---VDGHISVVGI 271 (345)
T ss_dssp ----CC---HHHHHHHHHHEE---EEEEEEECSC
T ss_pred ----CC---HHHHHHHHHHHh---cCCEEEEECC
Confidence 22 135778888899 7999988764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=80.52 E-value=14 Score=26.75 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=47.5
Q ss_pred CCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhh
Q 023625 112 EGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vl 182 (279)
....+|+=+|+|. |......+.+. +.+++++|. ++.++.++.. ..+.++.+|..++ ..++|+++..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~-~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSE-FSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTT-CCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhc-CCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 4567899998754 33333333332 468999998 6666655521 2455666775431 22588887742
Q ss_pred ccCChhHHHHHHHHHHHhCC
Q 023625 183 HNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~ 202 (279)
+++.....+..+.+.+.
T Consensus 93 ---~~~~~~~~~~~~~~~~~ 109 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMF 109 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTS
T ss_pred ---CCcHHHHHHHHHHHHHC
Confidence 33333444445555555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 279 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 6e-83 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 8e-73 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 7e-56 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 6e-34 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-30 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 3e-06 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 4e-06 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-05 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.004 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 247 bits (631), Expect = 6e-83
Identities = 114/244 (46%), Positives = 166/244 (68%), Gaps = 3/244 (1%)
Query: 36 APFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITD 95
AP V+ V DP + ++H L W+ +D +LF G WD + P++ + F D M +D
Sbjct: 4 APMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASD 63
Query: 96 SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT 155
S+LI + ++DC VF+GL+S+VDV GGTG A+ I FP +KC VFD P VV+NL G
Sbjct: 64 SKLIN-LALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG- 121
Query: 156 NDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215
++NL ++GG+MF +IP A+AVLLK+ILHNW D++ +++LKKCKEA+ + + GKV IIDM
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181
Query: 216 AIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLI 275
I+ + + + + +L D+ M + GKER+ ++WKKLF+ AGF HYKI+P+ G SLI
Sbjct: 182 VIDKKKDENQVTQIKLLMDVNM-ACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLI 240
Query: 276 EAYP 279
E YP
Sbjct: 241 EIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 221 bits (564), Expect = 8e-73
Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 6/244 (2%)
Query: 36 APFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITD 95
A F + P + + ++D LF+ HG ++ + + K +F M+
Sbjct: 5 ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 64
Query: 96 SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT 155
++ + FEG+ +LVDV GG+G I + +P IK FDLP V++N
Sbjct: 65 CATEMKRML-EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 123
Query: 156 NDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215
++ +GG+MF ++PQ +A++LK + HNW+DE+ ++ L C +A+ GKVII++
Sbjct: 124 -SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS---PNGKVIIVEF 179
Query: 216 AIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSL 274
+ + E + D LM G+ER+ ++KL +GFS +++ +
Sbjct: 180 ILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 275 IEAY 278
+E Y
Sbjct: 240 MEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 178 bits (451), Expect = 7e-56
Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 7/242 (2%)
Query: 36 APFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITD 95
+ + D + +++ L + + F A+G ++ +P+F +F M
Sbjct: 6 SALNLMNQDKVLMESWYHLKDAVLDGGIP-FNKAYGMTAFEYHGTDPRFNKVFNKGMSDH 64
Query: 96 SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT 155
S + ++ + FEGLKSLVDV GGTG + I + +P IK FDLPHV+++ +
Sbjct: 65 STITMKKIL-ETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-APS 122
Query: 156 NDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215
++ +GG+MF +IP+A+AV +KWI H+W+DE +K LK C EA+P KVI+ +
Sbjct: 123 YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNG---KVIVAEC 179
Query: 216 AIENQSQDKESMETQLCFDILM-VSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSL 274
+ + + + D++M GKER+ +++ L AGF +K+ +
Sbjct: 180 ILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYI 239
Query: 275 IE 276
+E
Sbjct: 240 ME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 122 bits (305), Expect = 6e-34
Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 21/261 (8%)
Query: 32 PLKAAPFVDLVADPLYT-TAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYD 90
P + ++DL + AF L ++ P+ + +G+ W+ ++ + F
Sbjct: 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPA-YAGRYGRPFWEDLSADVALADSFDA 60
Query: 91 LMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVD 150
LM D +L + ++ ++DV GG G M AIA P ++ T+ +L +
Sbjct: 61 LMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 118
Query: 151 NLQGTNDNLDFLGGNMFEAI-------PQANAVLLKWILHNWNDEESVKLLKKCKEAIPS 203
+ + A+ VLL ++L NW+DE+++ +L+ C A+
Sbjct: 119 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP 178
Query: 204 KDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263
+++++D A D D+ M++ G+ R+ D+ L +AG +
Sbjct: 179 GG---RLLVLDRADVEG--DGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALA 233
Query: 264 KITPMLGVR-----SLIEAYP 279
S++E
Sbjct: 234 SERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 112 bits (279), Expect = 3e-30
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 33/260 (12%)
Query: 45 PLYTTAFHCLGTWLQNDDPSL-------------FETAHGKKVWDRVADEPKFKSLFYDL 91
P A+H L + D S +E+ +GK ++ +A P ++ F L
Sbjct: 1 PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 60
Query: 92 MITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN 151
+ D ++ + ++ ++DV GG G A AIA P + TV ++ VD
Sbjct: 61 LACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDT 118
Query: 152 LQGTNDNLDFLGGNMFEAIP-------QANAVLLKWILHNWNDEESVKLLKKCKEAIPSK 204
+ + +A+A++L ++L NW D ++V++L +C EA+
Sbjct: 119 ARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG 178
Query: 205 DEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264
+++I + + + E D+ M+ G R+ + W L +AG +
Sbjct: 179 G---RILIHERDDLH---ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 232
Query: 265 ITPMLG-----VRSLIEAYP 279
+ + SL+ P
Sbjct: 233 VRQLPSPTIPYDLSLLVLAP 252
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 42.5 bits (100), Expect = 3e-06
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKD 30
+R LV G + E+ T LL D
Sbjct: 55 IRHLVAIGLLEEDAPGEFVPTEVGELLADD 84
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 42.5 bits (100), Expect = 4e-06
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 8/38 (21%)
Query: 1 MRILVHSGFFAQQKDDE--------YFLTPASRLLLKD 30
+R+L + Y L ++ L+K+
Sbjct: 69 LRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 40.3 bits (94), Expect = 2e-05
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1 MRILVHSGFFAQQKDDE--YFLTPASRLLLKD 30
MR L H+GFF +E Y LT AS LL++
Sbjct: 68 MRYLAHNGFFEIITKEEESYALTVASELLVRG 99
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 17/159 (10%), Positives = 52/159 (32%), Gaps = 16/159 (10%)
Query: 117 LVDVAGGTGIMARAIATAFPDI-------KCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA 169
++D+ G G A A + + + + ++
Sbjct: 20 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79
Query: 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET 229
+ + ++ H+++D K +E + G+ +++D + + ++
Sbjct: 80 DDSFDIITCRYAAHHFSDVR-----KAVREVARVLKQDGRFLLVDHY----APEDPVLDE 130
Query: 230 QLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268
+ + +E S+ +W+ +F A ++ I
Sbjct: 131 FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 40.2 bits (94), Expect = 3e-05
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 8/38 (21%)
Query: 1 MRILVHSGFFAQQKDDE--------YFLTPASRLLLKD 30
+R+L Y L+ + L+ D
Sbjct: 71 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 108
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 35.4 bits (80), Expect = 0.004
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 16/161 (9%)
Query: 115 KSLVDVAGGTGIMARAIATAFP-----DIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA 169
+ ++DVA G G +A A A D+ + + G G
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET 229
++ + + + + + +GG+++++D + E+
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVL---KKGGQLLLVDNSAP------ENDAF 127
Query: 230 QLCFDILMVSLFRGKER--SVDDWKKLFLAAGFSHYKITPM 268
+ ++ + R DW K+ AGF ++
Sbjct: 128 DVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 168
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 279 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.86 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.83 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.82 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.74 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.68 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.6 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.53 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.48 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.47 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.45 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.44 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.43 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.37 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.34 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.33 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.33 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.33 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.32 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.32 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.26 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.26 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.21 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.07 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.05 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.92 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.89 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.83 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.7 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.68 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.63 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.53 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.49 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.48 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.44 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.41 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.29 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.26 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.22 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.22 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.2 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.14 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.12 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.09 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.07 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.06 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.05 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.05 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.05 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.05 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.81 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.78 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.76 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.74 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.74 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.72 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.49 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.48 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.35 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.23 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.99 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.99 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.77 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.51 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.5 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.0 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.79 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.67 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.56 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.48 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.48 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.35 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.17 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.34 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.6 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.26 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.97 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.44 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.35 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.34 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.18 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.25 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.19 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.07 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.14 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.14 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 88.05 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 86.83 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 86.51 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.13 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.02 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.56 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 85.37 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 85.36 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 85.32 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.17 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 83.79 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.62 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 83.5 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.03 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 81.77 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 81.36 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.6e-51 Score=335.75 Aligned_cols=242 Identities=28% Similarity=0.527 Sum_probs=208.2
Q ss_pred CChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhC
Q 023625 33 LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFE 112 (279)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 112 (279)
.|+++++.++++|.++++|.+|++++++|++++|+.++|.++|+|+.++|+..+.|+++|...+...++.+++.++ .++
T Consensus 2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~ 80 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFE 80 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTT
T ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc
Confidence 3689999999999999999999999999887899999999999999999999999999999988888888999887 468
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~ 192 (279)
+..+|||||||+|.+++++++++|+++++++|+|++++.+... +|++++.+|+++++|++|+|+++++||+|+|++|++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~-~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~ 159 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIE 159 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCC-CCeEEecCCcccccccceEEEEehhhhhCCHHHHHH
Confidence 8899999999999999999999999999999999999888775 899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEec-CCc
Q 023625 193 LLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM-LGV 271 (279)
Q Consensus 193 ~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~-~~~ 271 (279)
+|++++++|+ |||+|+|+|.++++....++.......+|+.|++.++|++||.+||++||++|||+.+++++. .+.
T Consensus 160 iL~~~~~aL~---pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~ 236 (244)
T d1fp1d2 160 FLSNCHKALS---PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNS 236 (244)
T ss_dssp HHHHHHHHEE---EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTT
T ss_pred HHHHHHHHcC---CCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCC
Confidence 9999999999 799999999999887655332223446788999888999999999999999999999999765 477
Q ss_pred eeEEEEeC
Q 023625 272 RSLIEAYP 279 (279)
Q Consensus 272 ~~~i~~~~ 279 (279)
.+|||+||
T Consensus 237 ~~viE~~K 244 (244)
T d1fp1d2 237 LGVMEFYK 244 (244)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 89999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=9e-50 Score=327.64 Aligned_cols=240 Identities=47% Similarity=0.913 Sum_probs=216.1
Q ss_pred ChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCC
Q 023625 34 KAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113 (279)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~ 113 (279)
|+..++.++.+|.++.+|..|++++|++.+++|+.++|+++|+|+.++|+..+.|+++|...+......+.+ +.+.+.+
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~ 80 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDG 80 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccC
Confidence 578889999999999999999999999988999999999999999999999999999999888776665544 3345788
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKL 193 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~ 193 (279)
..+|||||||+|.++++++++||+++++++|+|++++.+... +|++++.+|+++++|++|+|+++++||+|+|++|+++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~-~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i 159 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI 159 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB-TTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCccc-CceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence 899999999999999999999999999999999999988765 8999999999999899999999999999999999999
Q ss_pred HHHHHHhCCCCCCC---cEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCC
Q 023625 194 LKKCKEAIPSKDEG---GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG 270 (279)
Q Consensus 194 L~~~~~~L~~~~pg---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~ 270 (279)
|++++++|+ || |+++|+|.++++....++.......+|+.|++ .+|++||.+||++||++|||+.++++++++
T Consensus 160 L~~~~~al~---pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~ 235 (244)
T d1fp2a2 160 LKKCKEAVT---NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTG 235 (244)
T ss_dssp HHHHHHHHS---GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHcC---cccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence 999999999 56 89999999998876654333334467887775 689999999999999999999999999999
Q ss_pred ceeEEEEeC
Q 023625 271 VRSLIEAYP 279 (279)
Q Consensus 271 ~~~~i~~~~ 279 (279)
..++||+||
T Consensus 236 ~~svIE~~p 244 (244)
T d1fp2a2 236 FLSLIEIYP 244 (244)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4e-48 Score=318.52 Aligned_cols=240 Identities=30% Similarity=0.565 Sum_probs=218.3
Q ss_pred CCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhh
Q 023625 32 PLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF 111 (279)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~ 111 (279)
+.|+++++.+..++.+++.|.+|++++|+|+ ++|+.++|+++|+|+.++|+..+.|.++|...+....+.+++.+++ +
T Consensus 2 ~~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~ 79 (243)
T d1kyza2 2 GVSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-F 79 (243)
T ss_dssp SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-T
T ss_pred CCcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-c
Confidence 4579999999888999999999999999998 7999999999999999999999999999999888888888888873 4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
.+..+|||||||+|.+++++++++|+++++++|+|++++.++.. +|++++.+|+++++|.+|+|++++++|+|+++++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~-~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~ 158 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY-PGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCL 158 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC-TTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC-CceEEecccccccCCCcceEEEEEEeecCCHHHHH
Confidence 66789999999999999999999999999999999999888776 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc-CCeeCCHHHHHHHHHHCCCceeEEEecCC
Q 023625 192 KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGKERSVDDWKKLFLAAGFSHYKITPMLG 270 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~r~~~e~~~ll~~aGf~~~~~~~~~~ 270 (279)
++|++++++|+ |||+++|+|.++++....+........+|+.|++.+ +|++||.+||++||++|||+.+++++.++
T Consensus 159 ~iL~~~~~al~---pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~ 235 (243)
T d1kyza2 159 KFLKNCYEALP---DNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAF 235 (243)
T ss_dssp HHHHHHHHHCC---SSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEET
T ss_pred HHHHHHHHhcC---CCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 99999999999 799999999998876655333333457899988765 79999999999999999999999999988
Q ss_pred ceeEEEE
Q 023625 271 VRSLIEA 277 (279)
Q Consensus 271 ~~~~i~~ 277 (279)
..+|||+
T Consensus 236 ~~~viE~ 242 (243)
T d1kyza2 236 NTYIMEF 242 (243)
T ss_dssp TEEEEEE
T ss_pred CCEEEEe
Confidence 8999996
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=2.2e-44 Score=298.59 Aligned_cols=241 Identities=23% Similarity=0.405 Sum_probs=206.8
Q ss_pred CCCChHHHHHHhcChhh-HHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchh
Q 023625 31 TPLKAAPFVDLVADPLY-TTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKE 109 (279)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 109 (279)
+|.++++|+.+...... ..+|.+|.+++|+|. ++|+..+|.++|+|+.++|+..+.|+++|...+...++.+++.++
T Consensus 1 hp~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d- 78 (256)
T d1qzza2 1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD- 78 (256)
T ss_dssp CTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-
T ss_pred CcHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-
Confidence 46678888766532222 247999999999998 689999999999999999999999999999998888898999987
Q ss_pred hhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCCCCC-ccceeeehhhh
Q 023625 110 VFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFEAIP-QANAVLLKWIL 182 (279)
Q Consensus 110 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~v~~~~vl 182 (279)
+++.++|||||||+|.++..+++++|+++++++|+|++++.+++ ..+|++++.+|+++++| ++|+|++.++|
T Consensus 79 -~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vL 157 (256)
T d1qzza2 79 -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL 157 (256)
T ss_dssp -CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred -CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccc
Confidence 88889999999999999999999999999999999999887763 46899999999999776 69999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
|+|+++++.++|++++++|+ |||+++|+|.+.++.....+ .....+|+.|+...+|++||.+||+++|++|||++
T Consensus 158 h~~~d~~~~~lL~~i~~~Lk---pgG~llI~d~~~~~~~~~~~--~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~ 232 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADR--FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 232 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEE---EEEEEEEEECCH-------H--HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred cccCcHHHHHHHHHHHhhcC---CcceeEEEEeccCCCCcccH--HHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCce
Confidence 99999999999999999999 79999999987665433322 23457899999988999999999999999999999
Q ss_pred eEEEecCC-----ceeEEEEeC
Q 023625 263 YKITPMLG-----VRSLIEAYP 279 (279)
Q Consensus 263 ~~~~~~~~-----~~~~i~~~~ 279 (279)
+++.+.+. ..+|||++|
T Consensus 233 ~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 233 ASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEECCSSCSSCEEEEEEEE
T ss_pred eEEEEeCCcCccCceEEEEEEe
Confidence 99987643 359999876
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=7.5e-42 Score=283.30 Aligned_cols=223 Identities=26% Similarity=0.512 Sum_probs=196.9
Q ss_pred HHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHH
Q 023625 48 TTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIM 127 (279)
Q Consensus 48 ~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~ 127 (279)
..+|.+|++++|+|+ ++|+.++|+++|+|+.++|+....|..+|...+....+.+++.++ +.+.++|||||||+|.+
T Consensus 18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~ 94 (253)
T d1tw3a2 18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGF 94 (253)
T ss_dssp GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHH
T ss_pred cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHH
Confidence 357899999999998 689999999999999999999999999999988888888999998 78889999999999999
Q ss_pred HHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHHHHHHHHHHHh
Q 023625 128 ARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEA 200 (279)
Q Consensus 128 ~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~ 200 (279)
+..+++++|+++++++|+|++++.+++ ..+|++++.+|++++.| +||+|+++++||+|+++++.++|++++++
T Consensus 95 ~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~ 174 (253)
T d1tw3a2 95 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA 174 (253)
T ss_dssp HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence 999999999999999999888887763 46899999999998765 69999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCC-----ceeEE
Q 023625 201 IPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLG-----VRSLI 275 (279)
Q Consensus 201 L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~-----~~~~i 275 (279)
|+ |||+++|.|....+..... .....+|+.|+...+|++||.+||++++++|||++++++.++. ...+|
T Consensus 175 Lk---PGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li 248 (253)
T d1tw3a2 175 LE---PGGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLL 248 (253)
T ss_dssp EE---EEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEE
T ss_pred cC---CCcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEE
Confidence 99 7999999998765543331 2344678899988899999999999999999999999886643 35788
Q ss_pred EEeC
Q 023625 276 EAYP 279 (279)
Q Consensus 276 ~~~~ 279 (279)
+..|
T Consensus 249 ~~~P 252 (253)
T d1tw3a2 249 VLAP 252 (253)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8776
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=3.5e-21 Score=155.46 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=122.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHH--CCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATA--FPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~ 180 (279)
.++..+|||||||+|..+..+++. .|+++++++|+ +.+++.|++ ...++.+..+|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 467889999999999999999986 48899999999 999999874 34678889999887 556799999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc--------------CCeeC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF--------------RGKER 246 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~~~r 246 (279)
++|++++++..++|++++++|+ |||.+++.|...+........ ....+......... .-...
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lk---pgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLN---PNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEE---EEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCC---CCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 9999999899999999999999 799999999877654322110 00001111000000 01235
Q ss_pred CHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 247 SVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+.+++.++|+++||+.++++--......+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 889999999999999988864433333344543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.83 E-value=2.1e-20 Score=155.89 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=119.9
Q ss_pred hhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-
Q 023625 97 ELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE- 168 (279)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~- 168 (279)
......+....+ +++..+|||||||+|.++..+++++ +++++++|+ +.+++.|++ ..++++|+.+|+.+
T Consensus 53 ~~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 53 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc
Confidence 333444544444 6788999999999999999999875 578999999 888887774 45799999999988
Q ss_pred CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC
Q 023625 169 AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKER 246 (279)
Q Consensus 169 ~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r 246 (279)
|.+ .||+|++..++|++++. .++|++++++|+ |||++++.+....+...... ...+.+... .....
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~ 197 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLK---PRGVMAITDPMKEDGIDKSS---IQPILDRIK----LHDMG 197 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEEEECTTCCGGG---GHHHHHHHT----CSSCC
T ss_pred cccccccchhhccchhhhccCH--HHHHHHHHHhcC---CCcEEEEEEeecCCCCchhH---HHHHHHHhc----cCCCC
Confidence 655 49999999999999875 478999999999 79999999988776543311 111111111 12234
Q ss_pred CHHHHHHHHHHCCCceeEEEec
Q 023625 247 SVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
+.+++.++++++||+.+.+.+.
T Consensus 198 s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 198 SLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEC
T ss_pred CHHHHHHHHHHcCCceEEEEEC
Confidence 7899999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=4.6e-20 Score=151.34 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=117.2
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCC--ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D 174 (279)
.+++.++ ..+..+|||+|||+|.++..|++++.. +++++|. +.+++.|++ ...+++|..+|+.+ +.+ .||
T Consensus 84 ~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 3455554 456789999999999999999887655 7999999 999999885 23568999999976 443 499
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++.+++|++++++..++|++++++|+ |||.++|.+.+....... .+. ..+...|+.++|+++
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~Lk---pgG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~l 224 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALT---PNGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcC---CCcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHHH
Confidence 9999999999999999999999999999 799999988765433211 111 123446799999999
Q ss_pred HHHCCCceeEEEecC
Q 023625 255 FLAAGFSHYKITPML 269 (279)
Q Consensus 255 l~~aGf~~~~~~~~~ 269 (279)
|+++||++++.....
T Consensus 225 ~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHcCCEEEEEEeeC
Confidence 999999998876543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.82 E-value=5.8e-20 Score=148.59 Aligned_cols=150 Identities=17% Similarity=0.361 Sum_probs=113.6
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--cc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~ 173 (279)
+++..+ +.+..+|||||||+|.++..++++. .+++++|+ +.+++.|++ ..++++|+.+|..+ |++ .|
T Consensus 7 ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 7 LMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 444443 7788999999999999999999885 47999999 888888763 23789999999987 655 59
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--hhhcCCeeCCHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--VSLFRGKERSVDDW 251 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~r~~~e~ 251 (279)
|+|++.+++|+++|.+ ++|++++++|+ |||++++.+...+..... ....+... ........++.++|
T Consensus 83 D~v~~~~~l~~~~d~~--~~l~~~~r~Lk---pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPA--SFVSEAYRVLK---KGGQLLLVDNSAPENDAF------DVFYNYVEKERDYSHHRAWKKSDW 151 (231)
T ss_dssp EEEEEESCGGGCSCHH--HHHHHHHHHEE---EEEEEEEEEEEBCSSHHH------HHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred ccccccccccccCCHH--HHHHHHHHhcC---CCcEEEEEeCCCCCCHHH------HHHHHHHHhhcccCcccCCCHHHH
Confidence 9999999999998754 78999999999 799999998776543111 11111111 11112345688999
Q ss_pred HHHHHHCCCceeEEEe
Q 023625 252 KKLFLAAGFSHYKITP 267 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~ 267 (279)
.++|+++||+++++..
T Consensus 152 ~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 152 LKMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
Confidence 9999999999877653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=7.5e-20 Score=147.22 Aligned_cols=141 Identities=13% Similarity=0.279 Sum_probs=113.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||||||+|.++..+++..+. +++++|+ +.+++.|++. ..+++|+++|+.+ +.+ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 356689999999999999999877663 8999999 9999888741 2467999999987 443 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
+|++++++..++|++++++|+ |||.+++.+....+.... + .......|+.++|+++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk---~~G~~~i~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQEGVIL----------D----DVDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEE---EEEEEEEEEEEBSSSEEE----------E----TTTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcC---CcceEEEEEccccccccc----------c----cCCceeeCCHHHHHHHHHHcCCE
Confidence 999999988999999999999 799999998776542111 0 01123456899999999999999
Q ss_pred eeEEEecC
Q 023625 262 HYKITPML 269 (279)
Q Consensus 262 ~~~~~~~~ 269 (279)
+++.....
T Consensus 200 ii~~~~q~ 207 (222)
T d2ex4a1 200 LLAEERQE 207 (222)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 98887654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=8.7e-19 Score=143.03 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=115.6
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--cc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QA 173 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~ 173 (279)
+.+.+. +.++.+|||||||+|.++..++++++ ++++++|+ +.+++.|++ ..+|++|+.+|+.+..+ .|
T Consensus 25 l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~f 101 (245)
T d1nkva_ 25 LGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKC 101 (245)
T ss_dssp HHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCE
T ss_pred HHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCce
Confidence 445454 67889999999999999999998875 79999999 888887764 45789999999987433 59
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|+|++..++|++++. .++|++++++|| |||++++.+........... ....... .......+..++..
T Consensus 102 D~v~~~~~~~~~~d~--~~~l~~~~r~Lk---PGG~l~i~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 102 DVAACVGATWIAGGF--AGAEELLAQSLK---PGGIMLIGEPYWRQLPATEE---IAQACGV----SSTSDFLTLPGLVG 169 (245)
T ss_dssp EEEEEESCGGGTSSS--HHHHHHHTTSEE---EEEEEEEEEEEETTCCSSHH---HHHTTTC----SCGGGSCCHHHHHH
T ss_pred eEEEEEehhhccCCH--HHHHHHHHHHcC---cCcEEEEEeccccCCCChHH---HHHHhcc----CCCcccCCHHHHHH
Confidence 999999999999875 478999999999 79999999887665433211 0000000 01123458899999
Q ss_pred HHHHCCCceeEEEec
Q 023625 254 LFLAAGFSHYKITPM 268 (279)
Q Consensus 254 ll~~aGf~~~~~~~~ 268 (279)
+++++||.++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=9.9e-19 Score=141.68 Aligned_cols=150 Identities=17% Similarity=0.335 Sum_probs=114.4
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--cc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~ 173 (279)
+++..+ ++++.+|||||||+|.++..++++. .+++++|+ +.+++.|++ ..+++.++.+|..+ +++ .|
T Consensus 8 l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 8 MIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 444454 7889999999999999999999986 47999999 888888764 23689999999987 655 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh-h-hhcCCeeCCHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM-V-SLFRGKERSVDDW 251 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~r~~~e~ 251 (279)
|+|++..++|++++. .++|++++++|+ |||++++.+...++.. ....+++... . .....+..+..+|
T Consensus 84 D~v~~~~~l~~~~d~--~~~l~~~~r~Lk---pgG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T d1xxla_ 84 DIITCRYAAHHFSDV--RKAVREVARVLK---QDGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLSEW 152 (234)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEE---EEEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred ceeeeeceeecccCH--HHHHHHHHHeeC---CCcEEEEEEcCCCCCH------HHHHHHHHHHhhCCCcccccCCHHHH
Confidence 999999999998875 588999999999 7999999887655321 1111222111 1 1123556689999
Q ss_pred HHHHHHCCCceeEEEe
Q 023625 252 KKLFLAAGFSHYKITP 267 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~ 267 (279)
..+++++||.+.++..
T Consensus 153 ~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 153 QAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 9999999998776643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.9e-17 Score=131.52 Aligned_cols=138 Identities=16% Similarity=0.135 Sum_probs=102.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 186 (279)
+.+..+|||||||+|.++..+. +++++|+ +.+++.+++. +++++.+|+.+ +.+ .||+|++.++||+++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~ 105 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD 105 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred hCCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc--cccccccccccccccccccccccccccccccc
Confidence 3456689999999999988774 3589999 9999998864 68999999987 554 599999999999998
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch-hhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI-LMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
+. .++|++++++|+ |||++++.+...... . ......+. ......+...++.+++.++|+++||+++++
T Consensus 106 d~--~~~l~~~~~~L~---pgG~l~i~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 106 DP--ERALKEAYRILK---KGGYLIVGIVDRESF-----L-GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp CH--HHHHHHHHHHEE---EEEEEEEEEECSSSH-----H-HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cc--ccchhhhhhcCC---CCceEEEEecCCcch-----h-HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 74 588999999999 799999987643221 0 00000000 001112244569999999999999998887
Q ss_pred Ee
Q 023625 266 TP 267 (279)
Q Consensus 266 ~~ 267 (279)
..
T Consensus 175 ~~ 176 (208)
T d1vlma_ 175 VQ 176 (208)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=4.4e-16 Score=128.77 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=121.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
..+++.+. +.++.+|||||||.|.++..++++++ ++++++|+ ++.++.|++ +..++.+...|+.+....|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 34666665 78899999999999999999988875 69999999 777777653 3567888888876544469
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc----h-hhhhhhhcchhhhhhc-CCeeCC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK----E-SMETQLCFDILMVSLF-RGKERS 247 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~----~-~~~~~~~~d~~~~~~~-~~~~r~ 247 (279)
|.|++..++++++++....++++++++|+ |||+++|.+.+..+..... . ........++..-..+ +|...+
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lk---pgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMP---ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSC---TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccC---CCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 99999999999999888899999999999 7999999886654321100 0 0000111222222223 466679
Q ss_pred HHHHHHHHHHCCCceeEEEecC
Q 023625 248 VDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
.+++.++++++||++.++...+
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEECH
T ss_pred hHhhhhhHHhhccccceeeecc
Confidence 9999999999999998877653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=8.6e-16 Score=127.07 Aligned_cols=163 Identities=11% Similarity=0.146 Sum_probs=121.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
+.+++.+. +.++.+|||||||.|..+..+++++ +++++++++ +..++.|++ ..+++++..+|+......|
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 44566665 7889999999999999999999998 589999999 776666542 4689999999986533469
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCC-----Cchhhhhhhhcchhhhh-hcCCeeCC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ-----DKESMETQLCFDILMVS-LFRGKERS 247 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~-~~~~~~r~ 247 (279)
|.|++..++.++..+....++++++++|+ |||++++.+.....+.. .+.........+...-. ..+|...+
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lk---pgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs 205 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLP---ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 205 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSC---TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcC---CCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence 99999998888887767789999999999 79999998876543210 00000111111221112 23566679
Q ss_pred HHHHHHHHHHCCCceeEEEecC
Q 023625 248 VDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
..++..+++++||++.++..++
T Consensus 206 l~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 206 IPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHHHTTTCEEEEEEECH
T ss_pred hhhHHHHHHHhchhhcccccch
Confidence 9999999999999999887764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=1.2e-16 Score=132.63 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=87.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vl 182 (279)
.....+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++ ...+++|+.+|+.+ +.+ .||+|++.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 456789999999999999999998874 78999999 888888874 33478999999987 544 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|++++.+ ++|++++++|+ |||++++.|..
T Consensus 105 ~~~~d~~--~~l~~~~~~Lk---pgG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVK---KGGKIICFEPH 133 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEE---EEEEEEEEECC
T ss_pred hcCCCHH--HHHHHHHHHcC---cCcEEEEEECC
Confidence 9998864 78999999999 79999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.67 E-value=5.4e-16 Score=124.59 Aligned_cols=147 Identities=15% Similarity=0.246 Sum_probs=103.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCC-CCC-ccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~ 186 (279)
+.+.++|||||||+|.++..++++. .+++++|+ +.+++.|+. ..++++++.+|+.+ +.+ .||+|++.++||+++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 3456789999999999999998875 46999999 889999885 34689999999876 334 599999999999998
Q ss_pred hhHHHHHHHHHH-HhCCCCCCCcEEEEEeeecCCCCCCchhhh-h---hhhcch--hhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 187 DEESVKLLKKCK-EAIPSKDEGGKVIIIDMAIENQSQDKESME-T---QLCFDI--LMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 187 ~~~~~~~L~~~~-~~L~~~~pgG~lli~e~~~~~~~~~~~~~~-~---~~~~d~--~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
++ .++|++++ ++|+ |||.+++.-+..... ...... . .....+ .-......+.++.++++++++++|
T Consensus 96 d~--~~~l~~i~~~~Lk---~gG~l~i~~pn~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G 168 (225)
T d2p7ia1 96 DP--VALLKRINDDWLA---EGGRLFLVCPNANAV--SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 168 (225)
T ss_dssp SH--HHHHHHHHHTTEE---EEEEEEEEEECTTCH--HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHhcC---CCceEEEEeCCcccH--HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC
Confidence 76 47799998 6899 799988865422110 000000 0 000000 000111234568999999999999
Q ss_pred CceeEEE
Q 023625 260 FSHYKIT 266 (279)
Q Consensus 260 f~~~~~~ 266 (279)
|++++..
T Consensus 169 f~i~~~~ 175 (225)
T d2p7ia1 169 LQVTYRS 175 (225)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9987754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=1.8e-15 Score=125.44 Aligned_cols=162 Identities=11% Similarity=0.166 Sum_probs=120.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
+.+++.+. +.++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ +.+++++...|+..+...|
T Consensus 51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 44666665 78899999999999999999999985 69999999 666665542 4678999999976544569
Q ss_pred ceeeehhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc------hhhhhhhhcchhhhhh
Q 023625 174 NAVLLKWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK------ESMETQLCFDILMVSL 240 (279)
Q Consensus 174 D~v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~------~~~~~~~~~d~~~~~~ 240 (279)
|.|++..++.++++ +.-..++++++++|+ |||++++.....++..... |. ......++..-..
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk---pgG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~kyi 203 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP---DDGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTEI 203 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC---TTCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHHT
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC---CCCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHHh
Confidence 99999999987776 345689999999999 7999999888765532110 00 0011112211112
Q ss_pred -cCCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 241 -FRGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 241 -~~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
.+|...+..++..+++++||++.++...+
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 35666799999999999999999887764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=4.6e-16 Score=124.61 Aligned_cols=101 Identities=14% Similarity=0.252 Sum_probs=87.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ....+.++.+|+.+ +.+ .||+|++..++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 456789999999999999999985 568999999 899988874 34678899999887 554 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|++++++..++|+++.++|+ |||++++....
T Consensus 113 ~~~~~~d~~~~l~~i~~~Lk---pgG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLK---PSGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEE---EEEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcC---cCcEEEEEEcC
Confidence 99998888899999999999 79999887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=7.8e-16 Score=123.52 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=107.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCCC--C--ccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEAI--P--QANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~--~--~~D~v~~~~vl 182 (279)
+.++.+|||+|||+|..+..+++..|+.+++++|+ |.+++.++. ..+++.++.+|...+. . .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67889999999999999999999999999999999 888887764 2367888888887642 1 36777777777
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
|++.+ ...+++++++.|+ |||.+++++.........++. ...+++.+.|+++||++
T Consensus 152 ~~~~~--~~~~l~~~~r~LK---pgG~~~i~~k~~~~d~~~~~~-------------------~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQ--AEILIKNAKWFLK---KGGYGMIAIKARSIDVTKDPK-------------------EIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTH--HHHHHHHHHHHEE---EEEEEEEEEEGGGTCSSSCHH-------------------HHHHHHHHHHHHHTEEE
T ss_pred cchHH--HHHHHHHHHHhcc---cCceEEEEeeccccCCCCCHH-------------------HHHHHHHHHHHHcCCEE
Confidence 76544 4678999999999 799999987665544332110 12367889999999999
Q ss_pred eEEEecCCc
Q 023625 263 YKITPMLGV 271 (279)
Q Consensus 263 ~~~~~~~~~ 271 (279)
++..++.++
T Consensus 208 ve~idL~py 216 (230)
T d1g8sa_ 208 VDEVDIEPF 216 (230)
T ss_dssp EEEEECTTT
T ss_pred EEEecCCCC
Confidence 999888654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=1.9e-15 Score=118.87 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~ 184 (279)
..++|||||||+|..+..++++. .+++++|+ +.+++.++. ..+++++...|+.+ +.+ .||+|++..++|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence 45699999999999999999984 67999999 888887663 23679999999987 333 5999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
+++++..++|++++++|+ |||.+++.....
T Consensus 108 ~~~~~~~~~l~~~~~~L~---pgG~~~~~~~~~ 137 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTK---PGGYNLIVAAMD 137 (198)
T ss_dssp SCTTHHHHHHHHHHHTEE---EEEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHcC---CCcEEEEEEecC
Confidence 999999999999999999 799998876543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=2.4e-15 Score=117.90 Aligned_cols=104 Identities=8% Similarity=0.104 Sum_probs=88.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----------------CCCeEEeeCCCCCCCC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----------------NDNLDFLGGNMFEAIP- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------~~ri~~~~~d~~~~~~- 171 (279)
.+++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.|++. ...+++..+|+.+..+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 577899999999999999999997 689999999 8999888741 3456888999887322
Q ss_pred ---ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 172 ---QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 172 ---~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.+|+|+...++|++++++....+++++++|+ |||++++.......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk---pgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMP---QACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC---SEEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcC---CCcEEEEEEccccc
Confidence 4999999999999999989999999999999 79998887665544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=4.3e-15 Score=120.97 Aligned_cols=99 Identities=26% Similarity=0.364 Sum_probs=83.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeeh-hhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLK-WIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~-~vl 182 (279)
..+.++|||||||+|.++..|+++. .+++++|+ +.+++.|++ ...++++..+|+.+ +.+ .||+|++. .++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhh
Confidence 4567799999999999999999974 57999999 899998875 23589999999987 655 59999885 688
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|+++.++..++|++++++|+ |||.+++..
T Consensus 117 ~~~~~~~~~~~L~~~~~~Lk---pgG~lii~~ 145 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALK---PGGVFITDF 145 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred hcCChHHHHHHHHHHHHHcC---CCcEEEEEe
Confidence 88888888999999999999 799887743
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.59 E-value=2.6e-15 Score=122.07 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeeh-hhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLK-WILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~-~vlh 183 (279)
.+.++|||||||+|.++..++++. .+++++|+ +.+++.|++ ...+++++.+|+.+ +.+ .||+|++. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 345799999999999999999985 47999999 899988874 34589999999987 444 59999864 5666
Q ss_pred cC-ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 184 NW-NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 184 ~~-~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++ +.++..++|+++++.|+ |||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lk---pgG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLK---EGGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEE---EEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 55 56788899999999999 7998775
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.9e-15 Score=118.70 Aligned_cols=132 Identities=6% Similarity=-0.011 Sum_probs=103.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------------------CCCCeEEeeCCCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------------------TNDNLDFLGGNMF 167 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~d~~ 167 (279)
..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456789999999999999999986 678999999 888876542 2468999999998
Q ss_pred C-C-C--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC
Q 023625 168 E-A-I--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG 243 (279)
Q Consensus 168 ~-~-~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 243 (279)
+ + . ..+|+|+...++|++++++...+++++.++|+ |||++++.....+......|.
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk---pgG~~~l~~~~~~~~~~~gpp----------------- 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG---KKFQYLLCVLSYDPTKHPGPP----------------- 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE---EEEEEEEEEEECCTTTCCCSS-----------------
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC---CcceEEEEEcccCCCCCCCCC-----------------
Confidence 7 2 2 25999999999999999999999999999999 799988877665443222110
Q ss_pred eeCCHHHHHHHHHHCCCceeEE
Q 023625 244 KERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
...+.+|++++|++ +|.+..+
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEE
Confidence 01278899999965 6665443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=4.5e-14 Score=114.56 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=107.0
Q ss_pred HHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEE
Q 023625 87 LFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDF 161 (279)
Q Consensus 87 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~ 161 (279)
.|....+..+++....+.. + ..++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.|++ ..-++++
T Consensus 98 aFGTG~H~TT~l~l~~l~~-~---~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~ 171 (254)
T d2nxca1 98 AFGTGHHETTRLALKALAR-H---LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRF 171 (254)
T ss_dssp ----CCSHHHHHHHHHHHH-H---CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEE
T ss_pred ccCccccchhhHHHHHHHh-h---cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeE
Confidence 4665555555555443332 2 456789999999999999988875 468999999 999988874 2346788
Q ss_pred eeCCCCCCC--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 162 LGGNMFEAI--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 162 ~~~d~~~~~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
..+|..+.. ..||+|++.... +...++++.++++|+ |||++++.+....
T Consensus 172 ~~~d~~~~~~~~~fD~V~ani~~-----~~l~~l~~~~~~~Lk---pGG~lilSgil~~--------------------- 222 (254)
T d2nxca1 172 LEGSLEAALPFGPFDLLVANLYA-----ELHAALAPRYREALV---PGGRALLTGILKD--------------------- 222 (254)
T ss_dssp EESCHHHHGGGCCEEEEEEECCH-----HHHHHHHHHHHHHEE---EEEEEEEEEEEGG---------------------
T ss_pred Eeccccccccccccchhhhcccc-----ccHHHHHHHHHHhcC---CCcEEEEEecchh---------------------
Confidence 889887643 369999985433 345678899999999 7999988654321
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEE
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLI 275 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i 275 (279)
..+++.+.++++||++++......+.+++
T Consensus 223 -------~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~ 251 (254)
T d2nxca1 223 -------RAPLVREAMAGAGFRPLEEAAEGEWVLLA 251 (254)
T ss_dssp -------GHHHHHHHHHHTTCEEEEEEEETTEEEEE
T ss_pred -------hHHHHHHHHHHCCCEEEEEEEECCEEEEE
Confidence 24678889999999999988888887653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=5.2e-14 Score=114.69 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=82.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC--C-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI--P-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~--~-~~D~v~~~ 179 (279)
.++..+|||||||+|..+..+++... .+++++|+ +.+++.|+. ...++.|..+|... +. . .||+|++.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 45778999999999999999988743 47999999 899988863 23579999999976 33 2 49999999
Q ss_pred hhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 180 WILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 180 ~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.++|+. +.++..++|++++++|+ |||.+++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk---~gG~~i~~~ 134 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLR---PGGYFIMTV 134 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeC---CCCEEEEEe
Confidence 999986 44677899999999999 799887753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=4.7e-14 Score=114.12 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=78.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeee-hhhhccC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLL-KWILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~-~~vlh~~ 185 (279)
.+...+|||||||+|.++..+++. +.+++++|+ +.+++.|++. ....++.+|+.+ +.+ .||+|++ ..++|++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~-~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREK-GVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHH-TCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccc-cccccccccccccccccccccceeeecchhhhh
Confidence 456789999999999999999876 578999999 9999999864 223366788876 554 4999996 5799998
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|.+ ++|++++++|+ |||.+++..+
T Consensus 117 ~d~~--~~l~~i~r~Lk---~gG~~ii~~~ 141 (246)
T d2avna1 117 ENKD--KAFSEIRRVLV---PDGLLIATVD 141 (246)
T ss_dssp SCHH--HHHHHHHHHEE---EEEEEEEEEE
T ss_pred hhHH--HHHHHHHhhcC---cCcEEEEEEC
Confidence 8864 68999999999 7998887653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=5e-14 Score=115.80 Aligned_cols=93 Identities=16% Similarity=0.276 Sum_probs=80.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++...++++..+|..+ |.+ .||+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4567999999999999999999999999999999 89999888755789999999987 654 4999999887764
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+++++++|| |||.+++..+.
T Consensus 160 ------~~e~~rvLk---pgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVK---PGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEE---EEEEEEEEEEC
T ss_pred ------HHHHHHHhC---CCcEEEEEeeC
Confidence 567889999 79999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-14 Score=118.53 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=93.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----CCCe---------------------------
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----NDNL--------------------------- 159 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri--------------------------- 159 (279)
.++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++. ...+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999999887666553 237999999 8888887631 1111
Q ss_pred ----EEeeCCC----CC-CCC--ccceeeehhhhccCCh--hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchh
Q 023625 160 ----DFLGGNM----FE-AIP--QANAVLLKWILHNWND--EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES 226 (279)
Q Consensus 160 ----~~~~~d~----~~-~~~--~~D~v~~~~vlh~~~~--~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~ 226 (279)
.....+. .. +.+ .||+|++..++|+.+. ++...+++++++.|| |||.+++.+.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk---pGG~li~~~~~~~~~~~~--- 202 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK---PGGHLVTTVTLRLPSYMV--- 202 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE---EEEEEEEEEESSCCEEEE---
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC---CCcEEEEEEeccccccee---
Confidence 1111111 11 222 5999999999998753 567799999999999 799999877643221000
Q ss_pred hhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 227 METQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 227 ~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
. .. .......+.++++++|++|||+++++.
T Consensus 203 --~--~~------~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 203 --G--KR------EFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp --T--TE------EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --c--cc------cccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 0 00 001123489999999999999988874
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.8e-13 Score=111.98 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=92.0
Q ss_pred CCCEEEEecCCccHHHHHHHHH----CCC--CeEEEeeC-hhHHhhccc----C--CCCeE--EeeCCCC-------CC-
Q 023625 113 GLKSLVDVAGGTGIMARAIATA----FPD--IKCTVFDL-PHVVDNLQG----T--NDNLD--FLGGNMF-------EA- 169 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~----~p~--~~~~~~D~-~~~~~~a~~----~--~~ri~--~~~~d~~-------~~- 169 (279)
+..+|||||||+|.++..++++ +|+ ++++++|. +.+++.+++ . ...+. +...++. .+
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 3458999999999998777654 555 35789999 888887763 1 13343 3343331 12
Q ss_pred -CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh-hhh-hcCCeeC
Q 023625 170 -IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL-MVS-LFRGKER 246 (279)
Q Consensus 170 -~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~r 246 (279)
...||+|++.+++|+++|. .++|++++++|+ |||.++|.... +.. .. ...+..+. ... .......
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lk---pgG~l~i~~~~--~~~---~~--~~l~~~~~~~~~~~~~~~~~ 187 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLG---TNAKMLIIVVS--GSS---GW--DKLWKKYGSRFPQDDLCQYI 187 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEE---EEEEEEEEEEC--TTS---HH--HHHHHHHGGGSCCCTTSCCC
T ss_pred CCCceeEEEEccceecCCCH--HHHHHHHHhhCC---CCCEEEEEEec--Ccc---hH--HHHHHHHHHhcCCCcccccC
Confidence 2259999999999999875 488999999999 79988887542 111 10 01111110 000 1124456
Q ss_pred CHHHHHHHHHHCCCceeE
Q 023625 247 SVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~ 264 (279)
+.++|.++|++.||+...
T Consensus 188 ~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 188 TSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHCCCceEE
Confidence 889999999999998543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.8e-14 Score=114.02 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=95.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCC---------------------------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDN--------------------------- 158 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~r--------------------------- 158 (279)
...+.+|||||||+|.++...+..... ++++.|. +.+++.+++ ....
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345789999999999887555544433 7999999 888887762 1111
Q ss_pred ----eEEeeCCCCCC-------C-C-ccceeeehhhhccCCh--hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC
Q 023625 159 ----LDFLGGNMFEA-------I-P-QANAVLLKWILHNWND--EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD 223 (279)
Q Consensus 159 ----i~~~~~d~~~~-------~-~-~~D~v~~~~vlh~~~~--~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~ 223 (279)
......|+.++ . + .||+|++..+||+.++ ++..++|++++++|| |||.+++.+....... .
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk---PGG~li~~~~~~~~~~-~ 206 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR---PGGHLLLIGALEESWY-L 206 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE---EEEEEEEEEEESCCEE-E
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC---CCCEEEEecccCCccc-c
Confidence 12334455431 1 1 4999999999998763 467899999999999 7999998876533210 0
Q ss_pred chhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 224 KESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 224 ~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
..... ......+.++++++|+++||+++++.
T Consensus 207 ---------~~~~~---~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 207 ---------AGEAR---LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp ---------ETTEE---EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ---------cCCcc---cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00000 01123599999999999999987654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=5.8e-13 Score=104.07 Aligned_cols=103 Identities=14% Similarity=0.338 Sum_probs=82.5
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCCCC--c
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEAIP--Q 172 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~~~--~ 172 (279)
+++.++ ..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ . ..++++..+|++++.+ .
T Consensus 44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 44 LVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 444444 45688999999999999999998876 5888998 888888763 2 3579999999988544 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
||+|++.-++|. ..+...++++++.+.|+ |||.++++
T Consensus 120 fD~Ii~~~p~~~-~~~~~~~~l~~~~~~Lk---pgG~l~i~ 156 (194)
T d1dusa_ 120 YNKIITNPPIRA-GKEVLHRIIEEGKELLK---DNGEIWVV 156 (194)
T ss_dssp EEEEEECCCSTT-CHHHHHHHHHHHHHHEE---EEEEEEEE
T ss_pred ceEEEEcccEEe-cchhhhhHHHHHHHhcC---cCcEEEEE
Confidence 999999888774 45556789999999999 79988774
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=5.2e-13 Score=105.34 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=97.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCC-CC--cccee-eehhhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEA-IP--QANAV-LLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-~~--~~D~v-~~~~vl 182 (279)
+.++.+|||+|||+|..+..+++..|+.+++++|+ +.+++.+++ ...++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 67899999999999999999999999889999999 999987764 236899999998773 22 23222 222334
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
+++. +...+|++++++|+ |||++++.+.........++. . ...+..+.+ ++||++
T Consensus 134 ~~~~--~~~~~l~~~~~~Lk---pgG~l~i~~~~~~~d~~~~~~---~----------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKN--QIEILKANAEFFLK---EKGEVVIMVKARSIDSTAEPE---E----------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTT--HHHHHHHHHHHHEE---EEEEEEEEEEHHHHCTTSCHH---H----------------HHHHHHHHH-HTTSEE
T ss_pred cChh--hHHHHHHHHHHHhc---cCCeEEEEEEccccCCCCCHH---H----------------HHHHHHHHH-HcCCEE
Confidence 4333 34678999999999 799999887543322222110 0 011222233 479999
Q ss_pred eEEEecCCc---eeEEEE
Q 023625 263 YKITPMLGV---RSLIEA 277 (279)
Q Consensus 263 ~~~~~~~~~---~~~i~~ 277 (279)
.+...+.++ +.+|-+
T Consensus 189 ~E~i~L~P~~~~H~~v~~ 206 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHA 206 (209)
T ss_dssp EEEEECTTTCTTEEEEEE
T ss_pred EEEEccCCCccCcEEEEE
Confidence 999888643 445544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1e-13 Score=111.32 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=73.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC---CCC--ccceee----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE---AIP--QANAVL---- 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~v~---- 177 (279)
..+.+|||||||+|..+..++++.+ .+++++|+ +.+++.|++ ...++.++.+|... +.+ .||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4577999999999999999998765 47999999 899988874 34567777776542 333 466665
Q ss_pred -ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 -LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 -~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
....++++.+ ...++++++++|| |||++++.+
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~Lk---pGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLK---PGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEE---EEEEEEECC
T ss_pred ccccccccccC--HHHHHHHHHHHcC---CCcEEEEEe
Confidence 5666666655 4578999999999 799887644
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.6e-11 Score=100.22 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=100.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--ccceeeehhh--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--QANAVLLKWI-- 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~v~~~~v-- 181 (279)
....+|||+|||+|..++.++..+|+++++++|+ +.+++.|++ ...+++++.+|++++.+ .||+|++.=.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 888988874 12589999999998654 5999988411
Q ss_pred -----------hccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 182 -----------LHNWND----------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 182 -----------lh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
+.+-+. +...++++.+.+.|+ |||.+++ |.- . .
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~---~~G~l~l-Eig--~---~----------------- 240 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV---SGGFLLL-EHG--W---Q----------------- 240 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE---EEEEEEE-ECC--S---S-----------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC---CCCEEEE-EEC--c---h-----------------
Confidence 111010 234578889999999 6887665 321 0 0
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEE-EecCCceeEEEEe
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKI-TPMLGVRSLIEAY 278 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~-~~~~~~~~~i~~~ 278 (279)
..+++.+++++.||+.+++ .++.+..-+|.+|
T Consensus 241 ------q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 241 ------QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ------CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ------HHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 2457789999999987765 4567776666665
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=2.9e-12 Score=104.02 Aligned_cols=118 Identities=12% Similarity=0.239 Sum_probs=91.0
Q ss_pred HHHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------
Q 023625 87 LFYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------ 154 (279)
Q Consensus 87 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------ 154 (279)
.|...|...++.. +..++..++ ..++.+|||+|||+|.++..|++. .|+-+++.+|. ++.++.|++
T Consensus 68 ~~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~ 145 (264)
T d1i9ga_ 68 DYVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 145 (264)
T ss_dssp HHHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc
Confidence 3445555544433 233455554 788999999999999999999998 68999999999 888888874
Q ss_pred --CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 155 --TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 155 --~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
..+++.+..+|+.+ +++ .||.|++ +.+++. .++.+++++|| |||++++..+.
T Consensus 146 ~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lk---pGG~lv~~~P~ 202 (264)
T d1i9ga_ 146 GQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLV---AGGVLMVYVAT 202 (264)
T ss_dssp TSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEE---EEEEEEEEESS
T ss_pred cCCCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccC---CCCEEEEEeCc
Confidence 25799999999986 454 5999986 356654 67999999999 79999886643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=1.4e-12 Score=101.09 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=80.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCCc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIPQ 172 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~~ 172 (279)
++..+. ..++.+|||+|||+|.+++++++.. .+++++|. +.+++.|++ ..++++++.+|..+ +.+.
T Consensus 25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 444443 5778999999999999999998864 47999999 899988874 35799999999876 2346
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
||+|++....++ ...+++.+.+.|+ |||++++..
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~Lk---pgG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLK---PGGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEE---EEEEEEEEE
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhC---cCCEEEEEe
Confidence 999998765543 3568999999999 799988754
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.3e-12 Score=105.10 Aligned_cols=140 Identities=15% Similarity=0.207 Sum_probs=101.9
Q ss_pred HHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc------C
Q 023625 88 FYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG------T 155 (279)
Q Consensus 88 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~ 155 (279)
|...|...++.. +..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++ .
T Consensus 76 ~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~ 153 (266)
T d1o54a_ 76 EIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL 153 (266)
T ss_dssp HHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc
Confidence 445554443332 234555555 7899999999999999999999885 7899999999 899988874 3
Q ss_pred CCCeEEeeCCCCCCCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhc
Q 023625 156 NDNLDFLGGNMFEAIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233 (279)
Q Consensus 156 ~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 233 (279)
.+++.+..+|+....+ .+|.|++ +.+++. .+|+++.++|| |||++++..+...
T Consensus 154 ~~~v~~~~~d~~~~~~~~~~D~V~~-----d~p~p~--~~l~~~~~~LK---pGG~lv~~~P~~~--------------- 208 (266)
T d1o54a_ 154 IERVTIKVRDISEGFDEKDVDALFL-----DVPDPW--NYIDKCWEALK---GGGRFATVCPTTN--------------- 208 (266)
T ss_dssp GGGEEEECCCGGGCCSCCSEEEEEE-----CCSCGG--GTHHHHHHHEE---EEEEEEEEESSHH---------------
T ss_pred ccCcEEEeccccccccccceeeeEe-----cCCCHH--HHHHHHHhhcC---CCCEEEEEeCccc---------------
Confidence 4788999999766443 4787754 566653 67999999999 7999988653210
Q ss_pred chhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 234 d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
..++..+.+++.||..+++..
T Consensus 209 -------------Qv~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 209 -------------QVQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp -------------HHHHHHHHHHHSSEEEEEEEC
T ss_pred -------------HHHHHHHHHHHCCceeEEEEE
Confidence 223556777889998776653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.32 E-value=1.9e-12 Score=104.42 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=78.9
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--c
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--Q 172 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~ 172 (279)
++...+ ..++.+|||+|||+|.++..+++. .|+.+++.+|. ++.++.|++ ...++++..+|+.+..+ .
T Consensus 77 Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 77 IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 344443 678999999999999999999987 58889999999 888888774 24789999999987544 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
||+|++ +.+++. .+|.++.++|| |||++++..
T Consensus 155 fD~V~l-----d~p~p~--~~l~~~~~~LK---pGG~lv~~~ 186 (250)
T d1yb2a1 155 YDAVIA-----DIPDPW--NHVQKIASMMK---PGSVATFYL 186 (250)
T ss_dssp EEEEEE-----CCSCGG--GSHHHHHHTEE---EEEEEEEEE
T ss_pred eeeeee-----cCCchH--HHHHHHHHhcC---CCceEEEEe
Confidence 999986 344443 67999999999 799998754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.2e-12 Score=107.71 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=88.5
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------------CCCCeEEeeCC
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------------TNDNLDFLGGN 165 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d 165 (279)
..+++.+. +.+..+|||||||+|.++..+++.++..+++++|+ +.+++.|+. ...+++|+.+|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 44666655 67889999999999999999999999889999999 887777652 23689999999
Q ss_pred CCC-CCC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 166 MFE-AIP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 166 ~~~-~~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+.+ +.. .+|+|++...+| + ++..+.|+++.+.|| |||++++.+...+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LK---pGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMK---EGGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCC---TTCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCC---CCcEEEEecccCCCC
Confidence 987 432 368888766554 2 345688999999999 799999887665543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=3.6e-11 Score=95.55 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=98.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCC--C----Cccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEA--I----PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~----~~~D~v~~~ 179 (279)
+.++.+|||+|||+|..+..+++.. |+-+++++|+ +.+++.++. ....+..+..|...+ . +.+|+++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6789999999999999999999975 7889999999 888887763 235677777877552 1 23676654
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.+++. ++...+++++.+.|+ |||+++++..........++. . -..+..++ .+.|
T Consensus 150 -d~~~~--~~~~~~l~~~~~~Lk---pgG~lvi~~ka~~~~~~~~~~---~----------------v~~~v~~l-~~~g 203 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLK---RGGYGMIAVKSRSIDVTKEPE---Q----------------VFREVERE-LSEY 203 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEE---EEEEEEEEEEGGGTCTTSCHH---H----------------HHHHHHHH-HHTT
T ss_pred -Ecccc--chHHHHHHHHHHhcc---cCCeEEEEEECCccCCCCCHH---H----------------HHHHHHHH-HHcC
Confidence 23322 345678999999999 799988875443322222110 0 11233444 4679
Q ss_pred CceeEEEecCCc---eeEEEEeC
Q 023625 260 FSHYKITPMLGV---RSLIEAYP 279 (279)
Q Consensus 260 f~~~~~~~~~~~---~~~i~~~~ 279 (279)
|++++...+.++ +.+|.+|+
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 999999887654 67777875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=1.4e-11 Score=96.54 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC--ccceeeehhhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP--QANAVLLKWIL 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~v~~~~vl 182 (279)
...|||||||+|.++..+++++|+..++++|+ +..+..+.+ ...++.++.+|+.. . ++ .+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 45799999999999999999999999999998 777776642 23689999999865 2 33 48988887766
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDEE------SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~~------~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
....... ...+|+.++++|+ |||.|++..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lk---pgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMG---KGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHT---TSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCC---CCcEEEEEE
Confidence 5333221 1478999999999 799998864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=6.7e-12 Score=99.22 Aligned_cols=99 Identities=14% Similarity=0.282 Sum_probs=80.0
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC---
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--- 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--- 171 (279)
.+++.+. ..++.+|||||||+|..+..+++.. +..+++++|. +.+++.|++ ...++.++.+|..+..+
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 3555554 7889999999999999999999876 6789999999 888888874 24789999999876322
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++...+++.+++ +.+.|+ |||++++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~Lk---pGG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLK---EGGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEE---EEEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcC---CCcEEEEE
Confidence 49999999999887652 456799 79999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=7.4e-12 Score=103.89 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=74.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC-----CC-Cccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE-----AI-PQAN 174 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~-----~~-~~~D 174 (279)
..+..+|||||||+|..+..|+++ +.+++++|+ +.+++.|++. ..+..+...|+.. +. ..||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 345679999999999999999987 578999999 8999887631 1234455566543 12 2599
Q ss_pred eeeeh-hhhccCCh-----hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 175 AVLLK-WILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 175 ~v~~~-~vlh~~~~-----~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+|++. .+++++++ ++..++|++++++|+ |||.+++-
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR---PGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE---EEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcC---cCcEEEEe
Confidence 88864 57777754 467889999999999 79987663
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=4.3e-11 Score=102.56 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=85.2
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------------CCCCeEE-ee
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------------TNDNLDF-LG 163 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~-~~ 163 (279)
...+++.++ +.++.+|||||||+|..+..+++.++..+++|+|+ +.+++.|+. ....+.+ ..
T Consensus 205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 345666665 78889999999999999999999999779999999 888887763 1233443 45
Q ss_pred CCCCC-C-----CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 164 GNMFE-A-----IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 164 ~d~~~-~-----~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+++.. + +..+|++++.+.+| +++..+.|+++.+.|| |||+|++.+...+..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LK---PGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAK---VGCKIISLKSLRSLT 339 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCC---TTCEEEESSCSSCTT
T ss_pred echhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcC---CCcEEEEecccCCCc
Confidence 66654 2 23578888866544 3456789999999999 799999988766543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=2.3e-10 Score=89.35 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=74.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~v~~~~v 181 (279)
....|||||||+|.++..+++.+|+..++++|+ +.++..|.. ...++.++.+|... . ++ .+|.|++...
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 345899999999999999999999999999999 777776642 23689999999865 1 33 4788776443
Q ss_pred hccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
- -|+... ...+|+.++++|+ |||.+.+..
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~Lk---pgG~l~i~T 146 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILP---ENGEIHFKT 146 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSC---TTCEEEEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCC---CCcEEEEEE
Confidence 2 233321 1478999999999 799998754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=8e-11 Score=93.54 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=78.9
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc----------CCCCeEEeeCCCCCC
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG----------TNDNLDFLGGNMFEA 169 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~ 169 (279)
.+++.+.....++.+|||||||+|..+..+++. .|..+++++|. +++++.|++ ...++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 355554323577889999999999999988885 56789999999 888887763 136899999998763
Q ss_pred CC---ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 170 IP---QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 170 ~~---~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+ .||+|++...+++.++ .+.+.|+ |||++++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~Lk---pGG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLK---PGGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEE---EEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcC---CCcEEEEE
Confidence 22 5999999999987665 3567799 79999884
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=1.3e-10 Score=97.31 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=74.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcc------cCCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~------~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
++++|||||||+|.++..++++.+. +++++|..+....++ +..++++++.+|..+ +.+ .+|+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 5689999999999999988887543 799999844444433 246889999999987 544 599999877766
Q ss_pred cCChh-HHHHHHHHHHHhCCCCCCCcEEE
Q 023625 184 NWNDE-ESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 184 ~~~~~-~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
....+ ....++..+.+.|+ |||+++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lk---p~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLA---PDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEE---EEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCC---CCeEEE
Confidence 65443 56788999999999 799876
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.1e-10 Score=95.72 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=88.4
Q ss_pred HHHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------
Q 023625 87 LFYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------ 154 (279)
Q Consensus 87 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------ 154 (279)
.|...|...++.. +..++..++ ..++.+|||+|||+|.++..|++. .|+-+++.+|+ ++.++.|++
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~ 147 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 4555666544432 234555554 788999999999999999999987 58889999999 888887763
Q ss_pred ----------CCCCeEEeeCCCCCC---CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 155 ----------TNDNLDFLGGNMFEA---IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 155 ----------~~~ri~~~~~d~~~~---~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..+++++..+|+.+. .+ .||.|++ +.+++. .+|.++.++|| |||++++.-+.+
T Consensus 148 ~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LK---pGG~lv~~~P~i 215 (324)
T d2b25a1 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLK---HGGVCAVYVVNI 215 (324)
T ss_dssp HHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEE---EEEEEEEEESSH
T ss_pred hhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhcc---CCCEEEEEeCCH
Confidence 247899999998763 22 4899886 444443 46999999999 799999866433
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=4e-10 Score=94.74 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=73.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
++++|||||||+|.++..++++.. .+++++|..+++..|++ ..++++++.+|+.+ +.+ .+|+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 568999999999999998887643 48999999666655542 46799999999987 554 599999876665
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 184 NWND-EESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 184 ~~~~-~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.... .....++..+.+.|+ |||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lk---pgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLV---EGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEE---EEEEEE
T ss_pred eeccchhHHHHHHHHHhccC---CCeEEE
Confidence 5443 345678888889999 799775
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=6.5e-10 Score=92.74 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=73.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcc------cCCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~------~~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..++++|||||||+|.++..++++.+ .+++++|..+....++ ...+++.++.+|..+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34578999999999999999998755 4899999943333232 246899999999987 444 5999998777
Q ss_pred hccCChhH-HHHHHHHHHHhCCCCCCCcEEE
Q 023625 182 LHNWNDEE-SVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 182 lh~~~~~~-~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.|....+. ...++....+.|+ |||+++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lk---p~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLA---KGGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEE---EEEEEE
T ss_pred eeecccccccHHHHHHHHhcCC---CCcEEe
Confidence 77655543 4466777788999 799876
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.00 E-value=7.3e-10 Score=87.58 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=76.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCCCC---ccce
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEAIP---QANA 175 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~---~~D~ 175 (279)
+++.++ +.++.+|||||||+|.++..|++.. .+++.+|. +..++.|++ ...++.++.+|.....+ .||+
T Consensus 62 ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 62 MLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 555555 7888999999999999999888874 57999998 888887764 24789999999876332 4999
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|++...+++.++. +.+.|+ |||++++.
T Consensus 138 Iiv~~a~~~ip~~--------l~~qLk---~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLCK--------PYEQLK---EGGIMILP 164 (224)
T ss_dssp EEESSBBSSCCHH--------HHHTEE---EEEEEEEE
T ss_pred HHhhcchhhhhHH--------HHHhcC---CCCEEEEE
Confidence 9998888776652 446789 79999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.92 E-value=1.3e-09 Score=84.40 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCCCEEEEecCCccHH----HHHHHHHC----CCCeEEEeeC-hhHHhhccc----------------------C-----
Q 023625 112 EGLKSLVDVAGGTGIM----ARAIATAF----PDIKCTVFDL-PHVVDNLQG----------------------T----- 155 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~----~~~l~~~~----p~~~~~~~D~-~~~~~~a~~----------------------~----- 155 (279)
.+..+|+++|||+|.- ++.+.+.. +..++++.|+ +.+++.|+. .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3456999999999983 34344432 2457999999 888887751 0
Q ss_pred ---------CCCeEEeeCCCCCC--C--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 156 ---------NDNLDFLGGNMFEA--I--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 156 ---------~~ri~~~~~d~~~~--~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
..++.+...+...+ . .++|+|++++||+.++++...++|++++++|+ |||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~---pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK---PDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE---EEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC---CCcEEEE
Confidence 12345666666552 1 25999999999999999999999999999999 7997665
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=2.7e-09 Score=86.30 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=89.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC--Cccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI--PQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~~~D~v~~~~v 181 (279)
..++.+|||+|||+|.++..++++ +..+++++|+ |..++.+++ ..+++++..+|..+-. ..||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 467899999999999999999987 4579999999 888887763 4678999999998732 25999987432
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
.....+|..+.+.++ |||.|.+.+.+..+... ....+.+.++.++.|+.
T Consensus 184 ------~~~~~~l~~a~~~l~---~gG~lh~~~~~~~~~~~----------------------~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 184 ------VRTHEFIPKALSIAK---DGAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 232 (260)
T ss_dssp ------SSGGGGHHHHHHHEE---EEEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred ------CchHHHHHHHHhhcC---CCCEEEEEeccccccch----------------------hhHHHHHHHHHHHcCCc
Confidence 123456888888999 69988776654322110 11445677888899997
Q ss_pred ee
Q 023625 262 HY 263 (279)
Q Consensus 262 ~~ 263 (279)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 64
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=2e-09 Score=82.95 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=85.5
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C----
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A---- 169 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~---- 169 (279)
..++++.+. ..+...+||++||+|..+.++++++|+.+++++|. +.+++.++. ..+|+.++.++|.+ +
T Consensus 12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 355666665 46778999999999999999999999999999999 999998874 35799999999864 1
Q ss_pred ---CCccceeeeh-----hhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 170 ---IPQANAVLLK-----WILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 170 ---~~~~D~v~~~-----~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
...+|.|++- .-+-.- .-....+.|..+.++|+ |||+++++....
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk---~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN---PGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEE---EEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcC---CCCeeeeecccc
Confidence 2347777653 211110 11234578999999999 799999887543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.84 E-value=4.5e-09 Score=82.43 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=76.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC---c
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP---Q 172 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~ 172 (279)
.+++.++ ..+..+|||||||+|..+..+++.. +.+++.+|. +..++.+++ ..+++.++.+|...-.+ .
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 3556555 7788999999999999999888764 356889998 888887774 24899999999987332 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
||.|++...+...++. +.+.|+ |||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~---~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLK---IGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEE---EEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcC---CCCEEEEE
Confidence 9999999888876663 345688 79999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=6.1e-09 Score=82.22 Aligned_cols=101 Identities=14% Similarity=0.215 Sum_probs=76.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHH------CCCCeEEEeeC-hhHHhhcccC----------CCCeEEeeC
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA------FPDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGG 164 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~ 164 (279)
.+++.+...+.+..+|||||||+|..+..+++. ++..+++.+|. ++.++.|++. ..++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 355554323678899999999999999888775 34568999999 8888777531 258999999
Q ss_pred CCCCCC---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 165 NMFEAI---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 165 d~~~~~---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|..+-. ..||+|++...+...++. +.+.|+ |||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk---~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLA---SGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEE---EEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchHH--------HHHhcC---CCcEEEEE
Confidence 988732 259999999988876652 456788 79999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.70 E-value=8.7e-09 Score=79.47 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=55.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~ 179 (279)
.+++|||+|||+|.+++.++...+. +++++|+ +.+++.|++...+++++.+|+.+....||+|++.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence 3689999999999999887776543 7999999 8999999886688999999987644569999985
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.2e-07 Score=76.10 Aligned_cols=72 Identities=6% Similarity=0.023 Sum_probs=58.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC----C-----Cccce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA----I-----PQANA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~----~-----~~~D~ 175 (279)
....++||+|||+|..+..|+++.|++++++.|+ +.+++.|++ ..+|+.+...+.... . ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4557999999999999999999999999999999 999988874 468898887554331 1 14999
Q ss_pred eeehhhhc
Q 023625 176 VLLKWILH 183 (279)
Q Consensus 176 v~~~~vlh 183 (279)
|++.=..+
T Consensus 140 ivsNPPY~ 147 (250)
T d2h00a1 140 CMCNPPFF 147 (250)
T ss_dssp EEECCCCC
T ss_pred EEecCccc
Confidence 99876665
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=8.7e-08 Score=77.45 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=55.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC----ccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP----QANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~----~~D~v~~~ 179 (279)
.+..+++|+|||+|..+..+++ +|+.++++.|+ +.+++.|++ ...++.+..+|++++.+ .||+|++.
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3456899999999999999875 69999999999 888888874 35789999999988532 58999874
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=8.1e-08 Score=75.37 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=78.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---------CCcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---------IPQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~ 173 (279)
..+.++|||||+|+|.-+..+++..| +.+++.+|. +...+.|++ ..++++++.||..+. ...|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45678999999999999999999987 689999999 888888773 468999999997541 1259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
|+|++-+ ..+.....+..+.+.|+ |||.|++-+..+.
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~---~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLR---PGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEE---EEEEEEEECCSGG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhc---CCcEEEEeCCccc
Confidence 9999842 34456778889999999 6776666554443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=1.1e-07 Score=79.34 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=74.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCcccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v 176 (279)
..++.+|||++||+|.++..++.... .+++.+|+ +..++.+++ ..++++++.+|.++. ...||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 45688999999999999999988754 38999999 888888774 346899999998752 1259999
Q ss_pred eehhhhccCCh---h----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWND---E----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~---~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.-.-..-.. . .-.++++.+.++|+ |||.|+...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~---pGG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK---DGGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE---EEEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEEe
Confidence 98322111111 1 23458888999999 799888765
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.49 E-value=3.6e-08 Score=73.07 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC----CCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA----IPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~----~~~~D~v~~~~v 181 (279)
.+.+|||+|||+|.++++.+.+... +++.+|. +.+++.+++ ..++++++.+|..+. ...||+|++-=.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999998887664 8999999 888877663 357899999998652 235999988321
Q ss_pred hccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~ 215 (279)
. ........|..+.. .|+ |+|.++ +|.
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~---~~g~ii-iE~ 121 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLS---EQVMVV-CET 121 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEE---EEEEEE-EEE
T ss_pred h---ccchHHHHHHHHHHCCCcC---CCeEEE-EEe
Confidence 1 12344556666643 477 567654 554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=5.1e-08 Score=76.38 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---------CCccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---------IPQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~D 174 (279)
...++|||+|||+|..+..+++..+ +.+++.+|. +...+.|+. ..++|+++.||..+- ...+|
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 3568999999999999999999875 579999999 888887763 457899999998652 12489
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++++-+ +.........+.++.+.|+ |||. +|+|.+.
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLk---pGGv-Iv~Ddvl 170 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLR---KGTV-LLADNVI 170 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEE---EEEE-EEESCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccC---CCcE-EEEeCcC
Confidence 998752 2122222344677778899 6775 5555443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=5.2e-07 Score=74.45 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------CCCCeEEeeCCCCC---CCC-cccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------TNDNLDFLGGNMFE---AIP-QANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~---~~~-~~D~v 176 (279)
+..++||.||+|.|..+.++++..|..+++++|+ |.+++.+++ ..+|++++.+|..+ ..+ .||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4578999999999999999999888889999999 899887763 24799999999876 223 59999
Q ss_pred eehhh--hccCCh-h--HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 177 LLKWI--LHNWND-E--ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 177 ~~~~v--lh~~~~-~--~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
++-.. ...-.. . -..++++.+++.|+ |||.+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~---p~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLN---PGGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEE---EEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcC---CCceEEEe
Confidence 96321 111011 0 12478999999999 68866653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=4.6e-07 Score=70.10 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
.+.+|||+|||+|.++++++.+.+ .+++++|+ +.+++.+++ ...+.++..+|..+....||+|++.=..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 357999999999999998887644 58999999 888887764 3568899999987654569999885433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.29 E-value=3.7e-07 Score=71.84 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=77.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC----------CCc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA----------IPQ 172 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~----------~~~ 172 (279)
..+.++||+||+++|.-+..+++..| +.+++.+|. +...+.|++ ..++|+++.||..+- ...
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 34678999999999999999999987 579999999 888877774 467999999998642 124
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
||+|++-. ..+.....++.+.+.|+ |||.|++-+..+
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~---~gGiii~DNvl~ 173 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVK---VGGVIGYDNTLW 173 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBC---TTCCEEEETTTG
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcC---CCcEEEEccCCC
Confidence 99999842 33456788999999999 688666654433
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=6.1e-07 Score=67.54 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=49.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-----CCCccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-----AIPQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-----~~~~~D~v~~ 178 (279)
...+.+|||+|||+|.++++.+.+ +.+++.+|. +.+++.+++ ...++....+|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 456789999999999999998887 457889999 888887763 34556555555432 1235999987
Q ss_pred h
Q 023625 179 K 179 (279)
Q Consensus 179 ~ 179 (279)
.
T Consensus 117 D 117 (171)
T d1ws6a1 117 A 117 (171)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.22 E-value=6.5e-07 Score=72.63 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------------CCCCeEEeeCCCCC---CCCc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------------TNDNLDFLGGNMFE---AIPQ 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~d~~~---~~~~ 172 (279)
+..++||.+|+|.|..+.++++ +|..+++++|+ |.+++.+++ ..+|++++.+|... ....
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 5678999999999999999987 56678999999 999988863 24799999999864 2346
Q ss_pred cceeeehhhhccCChhH---HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 173 ANAVLLKWILHNWNDEE---SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~---~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
||+|++-.. ...+... ..+.++.+++.|+ |||.+++.
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~---~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALN---NPGIYVTQ 189 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEE---EEEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcC---CCceEEEe
Confidence 999987332 2222211 1478999999999 68876553
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=8e-07 Score=73.65 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=71.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC-------CCccceeee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
..+.+|||++||+|.+++++++. ..+++.+|. +.+++.+++ .-++++++.+|.++. ...||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 35789999999999999998864 457999999 888888874 126799999998651 125999997
Q ss_pred hhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.-.-...+. ..-..+++.+.+.|+ |||.|++..
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk---pGG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK---EGGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcC---CCCEEEEEe
Confidence 321111111 123468889999999 799877654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=7e-07 Score=72.85 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CCC-ccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AIP-QANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~v~ 177 (279)
+..++||-||+|.|..+.++++..|..+++++|+ |.+++.+++ ..+|++++.+|..+ ..+ .||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4578999999999999999999877889999999 999988874 25799999999875 122 599999
Q ss_pred ehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+-..-..-.+. -..++++.+++.|+ |||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~---~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALK---EDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEE---EEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcC---CCcEEEEe
Confidence 74221100110 12578999999999 68876653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.17 E-value=1.1e-06 Score=71.07 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---C-CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---A-IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~~~D~v~ 177 (279)
+..++||-||+|.|..+.++++..+..+++++|+ |.+++.+++ ..+|++++.+|... . ...||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4568999999999999999998877789999999 999988873 25799999999875 1 23599998
Q ss_pred ehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+-..- ..... -...+++.+++.|+ |||.++..
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~---~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALK---EDGIFVAQ 188 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEE---EEEEEEEE
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcC---CCceEEEe
Confidence 74211 11110 12467999999999 68876653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.14 E-value=3.7e-06 Score=68.80 Aligned_cols=100 Identities=13% Similarity=0.221 Sum_probs=71.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCCC-------Cccce
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEAI-------PQANA 175 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~~-------~~~D~ 175 (279)
.....+|||+.||+|.++.+++.. +.+++.+|. +.+++.|++ . ..+++|+.+|.++-. ..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999998875 468999999 888888874 2 347999999997621 25999
Q ss_pred eeeh---hhhc----cCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 176 VLLK---WILH----NWN-DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 176 v~~~---~vlh----~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|++- ..-. .|. .+....+++.+.+.|+ |||.++++..
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~---~~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS---PKALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC---TTCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcC---CCCCEEEEec
Confidence 9972 1100 011 1233456677888888 6887666553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.4e-06 Score=70.81 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=73.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC-Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI-PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~-~~~D~v~ 177 (279)
+..++||-||+|.|..+.++++..+..+++++|+ |.+++.+++ ..+|++++.+|..+ .. ..||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4568999999999999999998777889999999 999998874 25899999999765 22 2599999
Q ss_pred ehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+-. .+..... -....++.+++.|+ |||.+++.
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~---~~Gi~v~q 191 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALK---EDGVLCCQ 191 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEE---EEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcC---CCCeEEEe
Confidence 742 2211111 11256899999999 68876654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.09 E-value=1.7e-06 Score=70.87 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---C-CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---A-IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~~~D~v~ 177 (279)
+..++||-||+|.|..+.++++..|..+++++|+ +.+++.+++ ..+|++++.+|..+ . ...||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4568999999999999999998777779999999 999988874 14799999999875 1 23599999
Q ss_pred ehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+-.. ....+. -...+++.+++.|+ |||.++..
T Consensus 185 ~D~~-dp~~~~~~L~t~eFy~~~~~~L~---~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSS-DPVGPAESLFGQSYYELLRDALK---EDGILSSQ 219 (312)
T ss_dssp ECCC--------------HHHHHHHHEE---EEEEEEEE
T ss_pred EcCC-CCCCcchhhhhHHHHHHHHhhcC---CCcEEEEe
Confidence 7321 111111 23467899999999 68876654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.07 E-value=2.6e-06 Score=67.67 Aligned_cols=91 Identities=13% Similarity=0.262 Sum_probs=67.5
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCc-c
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQ-A 173 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~-~ 173 (279)
...+++... ..+..+|||||||+|.++..|++.. .+++++|+ +..++.+++. .++++++.+|+.+ +.+. .
T Consensus 18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 345666554 5678899999999999999999984 47899998 6667766642 3689999999998 6663 4
Q ss_pred ceeeehhhhccCChhHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L 194 (279)
+..+.++.-++++.+-..+++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 444556666778876544444
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=3.5e-06 Score=63.94 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=66.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--C--CCccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--A--IPQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~--~~~~D~v~~~~vl 182 (279)
...+|||++||+|.++++.+.+... +++.+|. +.+++.+++ ...+++++.+|.++ . ...||+|++-=..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999999988654 7999999 888877663 24678899999775 2 2259999995332
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
. .....+++..+.+ .|+ ++| ++++|.-
T Consensus 122 ~---~~~~~~~l~~l~~~~~L~---~~~-iIiiE~~ 150 (183)
T d2fpoa1 122 R---RGLLEETINLLEDNGWLA---DEA-LIYVESE 150 (183)
T ss_dssp S---TTTHHHHHHHHHHTTCEE---EEE-EEEEEEE
T ss_pred c---cchHHHHHHHHHHCCCCC---CCe-EEEEEec
Confidence 2 2233455555544 477 466 4555543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=2.9e-06 Score=69.09 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=74.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC--Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI--PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D~v 176 (279)
+..++||-||+|.|..+.++++..|..+++++|+ +.+++.+++ ..+|++++.+|..+ .. ..||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4568999999999999999999777778999999 999988874 25899999999764 22 259999
Q ss_pred eehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 177 LLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 177 ~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
++-.. ...... -....++.+++.|+ |||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~---~~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALR---PGGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEE---EEEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcC---CCcEEEEe
Confidence 97321 111111 12468999999999 68877654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.05 E-value=1.8e-06 Score=71.29 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=71.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCC------CC-ccce
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEA------IP-QANA 175 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~------~~-~~D~ 175 (279)
..++.+|||+.||+|.++.+.+... ..+++.+|+ +..++.+++ . ..+++++.+|.++- .. .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4567899999999999998877642 336999999 888877763 2 36899999999752 12 4999
Q ss_pred eeehh--------hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 176 VLLKW--------ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 176 v~~~~--------vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|++-= -++.. ..+-.++++.+.+.|+ |||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~---pgG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILS---ENGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcC---CCCEEEEEe
Confidence 99721 11100 1134578999999999 789877644
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.05 E-value=6.8e-06 Score=64.80 Aligned_cols=84 Identities=11% Similarity=0.293 Sum_probs=60.5
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCCc-cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIPQ-AN 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-~D 174 (279)
..+++..+ ..+..+|||||||+|.++..|++.. .+++++++ +..++..++ ..++++++.+|+.+ +.+. -.
T Consensus 11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 44555554 5678999999999999999999984 46888888 777766653 24789999999998 5553 33
Q ss_pred eeeehhhhccCChh
Q 023625 175 AVLLKWILHNWNDE 188 (279)
Q Consensus 175 ~v~~~~vlh~~~~~ 188 (279)
..+.++.=++.+-+
T Consensus 87 ~~vv~NLPYnIss~ 100 (235)
T d1qama_ 87 YKIFGNIPYNISTD 100 (235)
T ss_dssp CEEEEECCGGGHHH
T ss_pred ceeeeeehhhhhHH
Confidence 34445555544443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=6.8e-06 Score=63.35 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cC-CCCeEEeeCCCCCC--CCccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GT-NDNLDFLGGNMFEA--IPQANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~-~~ri~~~~~d~~~~--~~~~D~v~~~~vlh~ 184 (279)
...+|+|||+|.|.-++-++-.+|+++++.+|. ..-+...+ .+ -.+++++.....+. ...||+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 457999999999999999999999999999997 43333322 22 26899999988873 3369999987763
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ ...+++-+.+.++ ++|++++.-
T Consensus 143 --~--~~~ll~~~~~~l~---~~g~~~~~K 165 (207)
T d1jsxa_ 143 --S--LNDMVSWCHHLPG---EQGRFYALK 165 (207)
T ss_dssp --S--HHHHHHHHTTSEE---EEEEEEEEE
T ss_pred --C--HHHHHHHHHHhcC---CCcEEEEEC
Confidence 2 3467777788888 789888754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.81 E-value=3.4e-05 Score=59.84 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=66.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC--CccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI--PQANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~v~~~~vlh~~~ 186 (279)
.....+|+|.|||+|.++.++.++++. .++.++|+ +..+..+ .+..+..+|++... ..||+++..-......
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEEEEECCCCCCBS
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----ccceeeeeehhccccccccceecccCcccccc
Confidence 345679999999999999999887765 56999998 5443332 35677788887632 3588888754322110
Q ss_pred --h-------------------------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 --D-------------------------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 --~-------------------------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
. +-...++.++.+.|+ |||++.++-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk---~~G~~~~I~ 144 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK---PGGVLVFVV 144 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc---cCCceEEEE
Confidence 0 012356778888999 799987764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.78 E-value=1.4e-05 Score=60.52 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
.+.+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ ..++++++.+|.++- ...||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5789999999999999999998643 7999999 777877663 346899999998651 125999988
Q ss_pred hhhhccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 179 KWILHNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
-=.. ..+....+|..+.+ .|+ |+| ++++|+-
T Consensus 120 DPPY---~~~~~~~~l~~i~~~~~L~---~~g-iIi~E~~ 152 (182)
T d2fhpa1 120 DPPY---AKQEIVSQLEKMLERQLLT---NEA-VIVCETD 152 (182)
T ss_dssp CCCG---GGCCHHHHHHHHHHTTCEE---EEE-EEEEEEE
T ss_pred chhh---hhhHHHHHHHHHHHCCCCC---CCE-EEEEEcC
Confidence 4221 12334567777754 478 566 5556654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.76 E-value=5.8e-05 Score=56.81 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=78.9
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCC-C-------
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFE-A------- 169 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~------- 169 (279)
..++++.+. ..++..++|..+|.|.++.+++++ +.+++++|. |.++..++. ...|+.+..+++.+ .
T Consensus 7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 345666554 467889999999999999999997 468999999 888888775 35799999998764 1
Q ss_pred CCccceeee-----hhhhccCCh--hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 170 IPQANAVLL-----KWILHNWND--EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 170 ~~~~D~v~~-----~~vlh~~~~--~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
...+|.|++ +.-+.+-.. ......|....+.++ |||+++++..
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk---~gg~~~ii~f 132 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA---PGGRLVVIAF 132 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE---EEEEEEEEEC
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC---CCCeEEEEec
Confidence 124666665 333322211 123457888889999 7999988774
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.74 E-value=2.4e-05 Score=64.74 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=70.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHH-----CCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC--CCccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATA-----FPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA--IPQANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~--~~~~D~v~~~ 179 (279)
....+|+|.+||+|.++.++.++ .+..+++++|+ +.++..|+. ......+..+|.+.. ...||+|++.
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 34578999999999999998764 24557999999 777777763 246677888887763 3369999886
Q ss_pred hhhccC-Chh---------------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 180 WILHNW-NDE---------------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 180 ~vlh~~-~~~---------------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
=..... .++ --..++.++.+.|+ |||++.++-
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk---~~G~~~~I~ 243 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK---PGGYLFFLV 243 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcC---CCCceEEEe
Confidence 433211 111 12346888999999 799877654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.74 E-value=7.5e-05 Score=58.53 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=88.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC-----CC-Cccceeee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE-----AI-PQANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~-----~~-~~~D~v~~ 178 (279)
....+|+|||+|.|.-++-++=.+|+.+++.+|. ..-+...+ .+ .++.++.....+ +. ..||+|++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEE
Confidence 3567999999999999999999999999999997 43333222 23 677877776543 12 25999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
+.+-. ...++.-+.+.++ +||++++.-.-.. . -..++.++.++..
T Consensus 148 RAva~------l~~ll~~~~~~l~---~~g~~i~~KG~~~----~----------------------~El~~a~~~~~~~ 192 (239)
T d1xdza_ 148 RAVAR------LSVLSELCLPLVK---KNGLFVALKAASA----E----------------------EELNAGKKAITTL 192 (239)
T ss_dssp ECCSC------HHHHHHHHGGGEE---EEEEEEEEECC-C----H----------------------HHHHHHHHHHHHT
T ss_pred hhhhC------HHHHHHHHhhhcc---cCCEEEEECCCCh----H----------------------HHHHHHHHHHHHc
Confidence 87642 4578888999999 7998887552100 0 0234455677888
Q ss_pred CCceeEEEe--cC---CceeEEEEe
Q 023625 259 GFSHYKITP--ML---GVRSLIEAY 278 (279)
Q Consensus 259 Gf~~~~~~~--~~---~~~~~i~~~ 278 (279)
|++..++.. +| +...++.++
T Consensus 193 ~~~~~~v~~~~lp~~~~~r~lv~i~ 217 (239)
T d1xdza_ 193 GGELENIHSFKLPIEESDRNIMVIR 217 (239)
T ss_dssp TEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred CCEEEEEEEEeCCCCCCCEEEEEEE
Confidence 988776644 33 233565554
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=7.3e-05 Score=56.17 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=69.7
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC-C---------
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA-I--------- 170 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~--------- 170 (279)
++.+.|. .+.+..+|||+||++|.++..+.+.. +..+++++|+.++ .. .+.+.++.+|+.+. .
T Consensus 12 EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~-i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DP-IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CC-CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cc-cCCceEeecccccchhhhhhhhhcc
Confidence 4555555 35788899999999999999988865 4578999998432 22 26788899998762 1
Q ss_pred -CccceeeehhhhccCC----h-----hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 171 -PQANAVLLKWILHNWN----D-----EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 171 -~~~D~v~~~~vlh~~~----~-----~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
..+|+|++-....--. | +-+...|.-+.+.|+ +||.+++
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk---~gG~fV~ 134 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVV 134 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccC---CCCcEEE
Confidence 2489988754332211 1 123456667778899 6887775
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.64 E-value=0.00011 Score=57.41 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCEEEEecCCccHHHHHHHH----HCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--C---C--ccceeeehhh
Q 023625 114 LKSLVDVAGGTGIMARAIAT----AFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--I---P--QANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~---~--~~D~v~~~~v 181 (279)
.++||++|++.|.-+..+++ ..++.+++++|+ +...........++++..+|..++ . . .+|+|++-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 57999999999986665443 246789999998 554444444458999999997652 1 1 3787776433
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|.. +.....+ +..+.|+ |||.++|-|.
T Consensus 161 -H~~--~~v~~~~-~~~~lLk---~GG~iIveD~ 187 (232)
T d2bm8a1 161 -HAN--TFNIMKW-AVDHLLE---EGDYFIIEDM 187 (232)
T ss_dssp -CSS--HHHHHHH-HHHHTCC---TTCEEEECSC
T ss_pred -cch--HHHHHHH-HHhcccC---cCCEEEEEcC
Confidence 532 3333444 4668899 6887777664
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00063 Score=54.42 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=61.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQ 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~ 172 (279)
..+++... ..+...|||||+|.|.++..|+++.. +++++++ +..++..++ ..++++++.+|+.+ +.+.
T Consensus 11 ~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 11 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 44555544 55678999999999999999999854 6777877 555555442 23689999999998 5665
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHh
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEA 200 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~ 200 (279)
.+.++. +.=++. ...++.++...
T Consensus 87 ~~~vV~-NLPY~I----ss~il~~~~~~ 109 (278)
T d1zq9a1 87 FDTCVA-NLPYQI----SSPFVFKLLLH 109 (278)
T ss_dssp CSEEEE-ECCGGG----HHHHHHHHHHC
T ss_pred hhhhhc-chHHHH----HHHHHHHHHhh
Confidence 555543 222222 34555555443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.48 E-value=0.0004 Score=54.07 Aligned_cols=106 Identities=8% Similarity=-0.015 Sum_probs=64.8
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhc----ccC-CCCeEEeeCCCCCC-CC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNL----QGT-NDNLDFLGGNMFEA-IP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a----~~~-~~ri~~~~~d~~~~-~~-~~D 174 (279)
.+.+.+- +.+..+|||+|||.|.++..++++.+..++.++|+..-.... ... .+-+++...+-... .+ .+|
T Consensus 57 ~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D 134 (257)
T d2p41a1 57 WFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD 134 (257)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence 3444442 677889999999999999999988776777777762111111 111 12345655543332 22 489
Q ss_pred eeeehhhhccCC----hhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 175 AVLLKWILHNWN----DEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 175 ~v~~~~vlh~~~----~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+|++-..-+.-+ .....++|.-+.+.|+ |||-+++
T Consensus 135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk---~gg~Fvv 173 (257)
T d2p41a1 135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLS---NNTQFCV 173 (257)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC---TTCEEEE
T ss_pred EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcc---cCCEEEE
Confidence 888753221111 1234577888889999 6886554
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.35 E-value=2.1e-05 Score=51.53 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=28.4
Q ss_pred CccccccCceeecCCCeEecChhcchhhcCC
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDT 31 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~~L~~~~ 31 (279)
||+|+++|+|+++++|.|.+|+.|++|++|+
T Consensus 55 Lr~l~a~gl~~e~~~~~y~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 55 IRHLVAIGLLEEDAPGEFVPTEVGELLADDH 85 (85)
T ss_dssp HHHHHHTTSEEEEETTEEEECTTGGGGSTTS
T ss_pred HHHHHHCCCeEecCCCeEecCHHHHHhhcCC
Confidence 5899999999999888999999999998874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00015 Score=57.34 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=50.1
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE 168 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~ 168 (279)
...+++... ..+...|||||||+|.++..|++.. .+++++++ +..++..+. ..++++++.+|+.+
T Consensus 10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence 344555554 5668899999999999999999875 46888888 666666553 24689999999987
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.99 E-value=0.0032 Score=50.79 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCCC------cc----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAIP------QA---- 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~~---- 173 (279)
.+...||.+|||-=.-...+ ...++++++-+|.|.+++.-++ ...+..++..|+..++. ++
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45678888999998887766 3457889999999999874331 13466788888865421 12
Q ss_pred -ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 174 -NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 174 -D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
-++++-.+++.++++++.++|+.+.+... ||+.|++
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~---~GS~l~~ 203 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSA---VGSRIAV 203 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCC---TTCEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCC---CCCEEEE
Confidence 35666778999999999999999999988 6776654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0011 Score=55.02 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=61.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC-------Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI-------PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~-------~~~D~v~ 177 (279)
..+..+|+|+-||+|.++..|+++. .+++++|. +..++.|+. ...+++|+.+|..+.. ..+|+++
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 4467899999999999999998864 47999999 888887763 2478999999987632 1379887
Q ss_pred ehhhhccCChhHHHHHHHHHHHh
Q 023625 178 LKWILHNWNDEESVKLLKKCKEA 200 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~ 200 (279)
+ +-|..-+.+.++.+.+.
T Consensus 288 l-----DPPR~G~~~~~~~l~~~ 305 (358)
T d1uwva2 288 L-----DPARAGAAGVMQQIIKL 305 (358)
T ss_dssp E-----CCCTTCCHHHHHHHHHH
T ss_pred e-----CCCCccHHHHHHHHHHc
Confidence 7 33333344556666654
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.016 Score=47.11 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=83.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------------------------CCCCeEEeeCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------------------------TNDNLDFLGGN 165 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------------------------~~~ri~~~~~d 165 (279)
.+...||-+|||.=.....+.+.+|+++++-+|.|++++.=+. ..++...+..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 3456899999999999999998999999999999888763210 14678889999
Q ss_pred CCC-CC----------Cc-cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 166 MFE-AI----------PQ-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 166 ~~~-~~----------~~-~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+.+ .. ++ .-++++-.+|..++++++.++|+.+.+..+ ++.+++.|.+.+..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~----~~~~i~YE~i~~~~ 237 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS----HGLWISYDPIGGSQ 237 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS----SEEEEEEEECCCCS
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC----CceEEEeccCCCCC
Confidence 876 21 11 336778889999999999999999999887 68889999986543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.0019 Score=48.26 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=63.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC----C--CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE----A--IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~----~--~~~~D~v~~ 178 (279)
...+|||+-||||.++.+.+.+... +++.+|. ..++...++ ......+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3579999999999999999998644 7999998 777665542 12356777776543 1 225999988
Q ss_pred hhhhccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeeec
Q 023625 179 KWILHNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~~ 217 (279)
-=.. .. +...++|..+.+ .|+ ++| ++++|+-.
T Consensus 122 DPPY-~~--~~~~~~l~~l~~~~~L~---~~~-liiiE~~~ 155 (183)
T d2ifta1 122 DPPF-HF--NLAEQAISLLCENNWLK---PNA-LIYVETEK 155 (183)
T ss_dssp CCCS-SS--CHHHHHHHHHHHTTCEE---EEE-EEEEEEES
T ss_pred chhH-hh--hhHHHHHHHHHHhCCcC---CCc-EEEEEecC
Confidence 3221 11 234566666654 577 455 66666543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.50 E-value=0.0028 Score=53.85 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-------------CCeEEEeeC-hhHHhhccc-------CCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-------------DIKCTVFDL-PHVVDNLQG-------TNDN 158 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~-------~~~r 158 (279)
++.+++.+. .....+|+|-.||+|.++.+..+... .....++|. +.....|+. ....
T Consensus 151 v~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 151 IQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 344444433 24568999999999999998877542 134789998 666666552 1245
Q ss_pred eEEeeCCCCCCCC--ccceeeehhhhccCC---------------hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 159 LDFLGGNMFEAIP--QANAVLLKWILHNWN---------------DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 159 i~~~~~d~~~~~~--~~D~v~~~~vlh~~~---------------~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+..+|.+...+ .||+|+..=....-. ...-...+.++.+.|+ +||++.++-
T Consensus 229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk---~~G~~~iI~ 298 (425)
T d2okca1 229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK---TGGRAAVVL 298 (425)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC---CCCeEEEEe
Confidence 6778888887433 599998854332110 1112468999999999 799877754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.00 E-value=0.17 Score=41.26 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=88.2
Q ss_pred CCEEEEecCCccHHHH-------HHH-HH--------CCCCeEEEeeChhH-----Hhhccc---CCC--CeEEeeCCCC
Q 023625 114 LKSLVDVAGGTGIMAR-------AIA-TA--------FPDIKCTVFDLPHV-----VDNLQG---TND--NLDFLGGNMF 167 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~-------~l~-~~--------~p~~~~~~~D~~~~-----~~~a~~---~~~--ri~~~~~d~~ 167 (279)
.-+|+|+||.+|..+. ... ++ -|..++..-|+|.. ...... ... =+..++|+|+
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 3579999999999873 222 21 25667888898532 111111 111 1345788999
Q ss_pred CC-CC--ccceeeehhhhccCCh-------------------------------hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 168 EA-IP--QANAVLLKWILHNWND-------------------------------EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 168 ~~-~~--~~D~v~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.. +| ..++++++..||-++. .|...+|+.=++=|. |||++++.
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv---~GG~mvl~ 208 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV---PGGRMVLT 208 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC---TTCEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcEEEEE
Confidence 84 55 4899999999986542 144567777777788 79999998
Q ss_pred eeecCCCCCCchhhhhhhhcc-----hhhhhhcC-------------CeeCCHHHHHHHHHHCC-CceeEE
Q 023625 214 DMAIENQSQDKESMETQLCFD-----ILMVSLFR-------------GKERSVDDWKKLFLAAG-FSHYKI 265 (279)
Q Consensus 214 e~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~-------------~~~r~~~e~~~ll~~aG-f~~~~~ 265 (279)
-...++...... .....++ +.-|+..| --.++.+|++..+++-| |++.++
T Consensus 209 ~~gr~~~~~~~~--~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 209 ILGRRSEDRAST--ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEECSSSSSSST--TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EeccCCCCCCCC--ccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 877665432210 0011111 11111111 22359999999998876 555544
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.012 Score=47.76 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=43.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--CCCCeEEeeCCCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--TNDNLDFLGGNMFE 168 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~ 168 (279)
...+|||||.|.|.++.+|+++..--++++++. +...+..++ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 466899999999999999998742237899988 555555443 24789999999874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.67 E-value=0.055 Score=43.56 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=69.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--CCccceeeeh-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--IPQANAVLLK- 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~~~D~v~~~- 179 (279)
..++.+|||+-+|.|.=+..+++... ...++..|. +.-+...+. ...++.+...|... + ...||.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 35678999999999999999988765 567889998 555554432 23567777777654 2 2258888761
Q ss_pred -----hhh-------ccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 180 -----WIL-------HNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 180 -----~vl-------h~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.++ ..+..+ .-.++|.++.+.++ |||+|+...-.+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk---~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK---PGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE---EEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC---CCcEEEEeeccC
Confidence 112 122222 22578899999999 799877665433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.0072 Score=44.17 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---C-CCccceeeehh-hhc
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---A-IPQANAVLLKW-ILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~-~~~~D~v~~~~-vlh 183 (279)
..++.+|+-+|+| .|.++..+++.. +++++++|. ++-++.+++......+...+-.+ . ...+|+++-.- .-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 5678899999987 778888888764 689999998 77788887653222222222111 1 22588776532 111
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. .+....+.++ |+|+++++.
T Consensus 104 ~~-------~~~~~~~~l~---~~G~iv~~G 124 (168)
T d1piwa2 104 DI-------DFNIMPKAMK---VGGRIVSIS 124 (168)
T ss_dssp TC-------CTTTGGGGEE---EEEEEEECC
T ss_pred cc-------hHHHHHHHhh---ccceEEEec
Confidence 11 1334567788 799999876
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.48 E-value=0.26 Score=35.24 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=62.6
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-----------CC-cccee
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-----------IP-QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----------~~-~~D~v 176 (279)
..+..+|+-+|+| .|.++..+++.. +++++++|. +.-++.+++......+..-+..++ .+ ++|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667888889977 677888888775 579999998 777888887644433332222111 12 37877
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+-.- .. ...+..+.+.++ |+|+++++..
T Consensus 103 id~~-----g~---~~~~~~a~~~~~---~~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITR---TGGTLMLVGM 130 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSC---TTCEEEECSC
T ss_pred eecC-----CC---hHHHHHHHHHHh---cCCceEEEec
Confidence 6532 11 245777888899 7999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.48 E-value=0.007 Score=45.51 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=67.8
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEe--eCCCCCC------CCccceeeehh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFL--GGNMFEA------IPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~--~~d~~~~------~~~~D~v~~~~ 180 (279)
.+++.+||-+|||. |..+..+++.....++++.|. +.-++.|++......+. ..|+.+. -.++|+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67788999999998 778888888877778999998 78888888752222111 1111110 11478877431
Q ss_pred h-------hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 181 I-------LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 181 v-------lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
- .+........+.|+.+.++++ |||++.++-...+
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r---~gG~v~~~G~~~~ 144 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTR---VAGKIGIPGLYVT 144 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEE---EEEEEEECSCCCS
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHh---cCCEEEEeeecCC
Confidence 1 011111122467999999999 7999998875443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.35 E-value=0.055 Score=39.11 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHHH
Q 023625 116 SLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
+|+=||||. |.++..|.+..+..+++++|. ++.++.+++. ..+.....+... .....|+|++.- +++...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~ 76 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 76 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-hcchhhhhhhhhhhccccccccccC-----Cchhhh
Confidence 577899985 345667777777889999999 8888888765 223222222222 223578888753 667788
Q ss_pred HHHHHHHHhCC
Q 023625 192 KLLKKCKEAIP 202 (279)
Q Consensus 192 ~~L~~~~~~L~ 202 (279)
.+|+++.+.++
T Consensus 77 ~vl~~l~~~~~ 87 (171)
T d2g5ca2 77 EIAKKLSYILS 87 (171)
T ss_dssp HHHHHHHHHSC
T ss_pred hhhhhhhcccc
Confidence 99999999998
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.082 Score=41.85 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=68.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCC-CCeEEeeCCCCCC---CC-ccceeee--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTN-DNLDFLGGNMFEA---IP-QANAVLL-- 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~-~ri~~~~~d~~~~---~~-~~D~v~~-- 178 (279)
..++.+|||+-+|.|.=+..+++...+.+++..|. +.-+...+ ..+ ..+.....|.... .+ .||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45678999999999999999999888888999997 54444433 222 3344444444321 22 4888876
Q ss_pred ----hhhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 179 ----KWIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ----~~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..++ ..|++.+ -.++|+++.+.++ |||+|+...-.+
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk---~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK---TGGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE---EEEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC---CCceEEEeeecC
Confidence 1222 2233322 2578999999999 799887765433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.34 E-value=0.055 Score=39.64 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=61.3
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCC--CC--------CCC-ccceee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNM--FE--------AIP-QANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~--~~--------~~~-~~D~v~ 177 (279)
..++.+||-+|+|. |.++..+++..--.++++.|. ++-++.+++.+....+-..+- .+ ..+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 45678999999774 888889998864347999998 888888887633222222221 10 012 488877
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-.- .. ...++.+.+.++ |||+++++..
T Consensus 106 d~v-----G~---~~~~~~a~~~l~---~~G~iv~~G~ 132 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLR---RGGFYSVAGV 132 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEE---EEEEEEECCC
T ss_pred ecC-----Cc---hhHHHHHHHHhc---CCCEEEEEee
Confidence 432 11 134677788899 7999988774
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.23 E-value=0.097 Score=38.09 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=63.2
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEe--eCCCCC-C------CCccceeeeh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFL--GGNMFE-A------IPQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~--~~d~~~-~------~~~~D~v~~~ 179 (279)
.+++.+|+=+|||. |.++..+++...-.++++.|. ++-.+.+++......+. ..|-.. . ..++|+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56678999999887 999999999887668889998 77777888752222221 112110 0 1247888753
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCC-cEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEG-GKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pg-G~lli~e~ 215 (279)
- .. ...+....+.++ || |+++++-.
T Consensus 106 ~-----G~---~~~~~~a~~~~~---~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-----GT---AQTLKAAVDCTV---LGWGSCTVVGA 131 (174)
T ss_dssp S-----CC---HHHHHHHHHTBC---TTTCEEEECCC
T ss_pred c-----cc---chHHHHHHHHhh---cCCeEEEecCC
Confidence 2 12 245888888998 55 99988764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.60 E-value=0.12 Score=37.07 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=50.5
Q ss_pred EEEEecCC--ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHH
Q 023625 116 SLVDVAGG--TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 116 ~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~ 192 (279)
+|.=||+| -+.++..|.++ +.+++++|. ++.++.+++. ..+.. ..+..+....+|+|++. .+++...+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~-~~~~~-~~~~~~~~~~~DiIila-----vp~~~~~~ 72 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER-QLVDE-AGQDLSLLQTAKIIFLC-----TPIQLILP 72 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-TSCSE-EESCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh-hccce-eeeeccccccccccccc-----CcHhhhhh
Confidence 45667765 33445555544 568999999 7778877654 21211 12222334568999874 36778889
Q ss_pred HHHHHHHhCC
Q 023625 193 LLKKCKEAIP 202 (279)
Q Consensus 193 ~L~~~~~~L~ 202 (279)
+++++.+.++
T Consensus 73 vl~~l~~~l~ 82 (165)
T d2f1ka2 73 TLEKLIPHLS 82 (165)
T ss_dssp HHHHHGGGSC
T ss_pred hhhhhhhhcc
Confidence 9999999998
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.31 Score=38.51 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=49.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--CC----Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--AI----PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~----~~~D~v~ 177 (279)
..++.+|||+.+|+|.-+..+++.. +..++++.|. +.-+...++ ...++.+...|+.. +. ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 4567899999999999999888764 4678999998 555555442 23678888888764 21 2488887
Q ss_pred e
Q 023625 178 L 178 (279)
Q Consensus 178 ~ 178 (279)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.092 Score=45.39 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC----C--------------CCeEEEeeC-hhHHhhccc-----
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF----P--------------DIKCTVFDL-PHVVDNLQG----- 154 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~----- 154 (279)
++..+++.+. .....+|+|-.||+|.++.+..+.. . ...+.++|+ +.+...++.
T Consensus 152 Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 152 LIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred hhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 3344444433 2346799999999999998776642 1 124789998 766665552
Q ss_pred -C----CCCeEEeeCCCCC-C---CCccceeeehhhhcc-C-C----------hhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 155 -T----NDNLDFLGGNMFE-A---IPQANAVLLKWILHN-W-N----------DEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 155 -~----~~ri~~~~~d~~~-~---~~~~D~v~~~~vlh~-~-~----------~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
. ...-.+..++.+. + .+.||+|+..=.+-. + . ...-..++.++.+.|+ |||++.++
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk---~gGr~aiI 306 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH---PGGRAAVV 306 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE---EEEEEEEE
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc---ccCcEEEE
Confidence 1 0122345555554 2 235898887432210 0 0 0112358999999999 79998776
Q ss_pred e
Q 023625 214 D 214 (279)
Q Consensus 214 e 214 (279)
-
T Consensus 307 l 307 (524)
T d2ar0a1 307 V 307 (524)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.97 E-value=0.13 Score=36.91 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=61.0
Q ss_pred hCCCCEEEEecC--CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---C-----CC-ccceeee
Q 023625 111 FEGLKSLVDVAG--GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---A-----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~-----~~-~~D~v~~ 178 (279)
..+..+|+=+|| +.|.++..+++.....++++.|. +.-.+.+++.... .++..+-.+ . .+ .+|+++-
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 567789999995 46777888888776678999998 7777777764222 222222111 1 12 3888876
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
... . ...++.+.++++ |+|+++++..
T Consensus 104 ~~g-----~---~~~~~~a~~~l~---~~G~iv~~G~ 129 (170)
T d1jvba2 104 LNN-----S---EKTLSVYPKALA---KQGKYVMVGL 129 (170)
T ss_dssp SCC-----C---HHHHTTGGGGEE---EEEEEEECCS
T ss_pred ccc-----c---chHHHhhhhhcc---cCCEEEEecc
Confidence 432 1 245667778899 7999998864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.76 E-value=0.085 Score=43.50 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=65.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--------------------CCCeEEeeCCCCC---
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--------------------NDNLDFLGGNMFE--- 168 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~~ri~~~~~d~~~--- 168 (279)
+..+|||..||+|..++..++..+..+++..|+ +..++.+++. ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999888777778999999 8888776631 1234555556432
Q ss_pred CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 169 AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 169 ~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
... .||+|.+-= +.. ...+|..+.++++ .||.|.|.-
T Consensus 125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~---~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAK---RRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEE---EEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCC--cHHHHHHHHHHhc---cCCEEEEEe
Confidence 122 489887732 122 2568999999998 467666653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.44 E-value=0.14 Score=37.01 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=59.3
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC---CCCC----CC-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN---MFEA----IP-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d---~~~~----~~-~~D~v~~~~ 180 (279)
..+..+|+=+|+|. |..+..+++.....++++.|. +.-++.+++.. -.+++..+ ..+. .+ ++|+++-.-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-a~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-ATHVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-CSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-CeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 56778888898764 556777777776667888887 77778777642 12232221 1110 12 488877532
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. ...++.+.+.++ |+|+++++..
T Consensus 105 -----G~---~~~~~~~~~~~~---~~G~i~~~G~ 128 (174)
T d1f8fa2 105 -----GS---PEILKQGVDALG---ILGKIAVVGA 128 (174)
T ss_dssp -----CC---HHHHHHHHHTEE---EEEEEEECCC
T ss_pred -----Cc---HHHHHHHHhccc---CceEEEEEee
Confidence 11 245778888899 7999988764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.35 E-value=0.35 Score=34.75 Aligned_cols=93 Identities=8% Similarity=-0.089 Sum_probs=55.9
Q ss_pred hCCCCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--------C-Cccceeeeh
Q 023625 111 FEGLKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--------I-PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--------~-~~~D~v~~~ 179 (279)
.+++.+||=+|+ |.|..+..+++..-..++++.|. +.-.+.+++....-.+...+-.+. . .++|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 567788888876 45557777888877789999998 777777776522222222222111 1 248988764
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.-- ...++.+...++ ++|..+++-
T Consensus 106 ~G~--------~~~~~~a~~~~~---~~~g~~~~~ 129 (176)
T d2jhfa2 106 IGR--------LDTMVTALSCCQ---EAYGVSVIV 129 (176)
T ss_dssp SCC--------HHHHHHHHHHBC---TTTCEEEEC
T ss_pred CCc--------hhHHHHHHHHHh---cCCcceEEe
Confidence 322 134556666777 454444433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.34 E-value=0.23 Score=36.00 Aligned_cols=96 Identities=6% Similarity=-0.017 Sum_probs=59.1
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--------CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--------IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--------~~-~~D~v~~~ 179 (279)
.++..+|+=+|+| .|..+..+++.....++++.|. ++-++.|++......+-..|.... .+ ++|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 5667889999965 4666777777766678999999 888999987533333322222111 12 47877753
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.- . ...+......+.. ++|+++++-..
T Consensus 107 ~g-----~---~~~~~~a~~~~~~--~~G~~v~vG~~ 133 (176)
T d1d1ta2 107 IG-----H---LETMIDALASCHM--NYGTSVVVGVP 133 (176)
T ss_dssp SC-----C---HHHHHHHHTTSCT--TTCEEEECSCC
T ss_pred CC-----c---hHHHHHHHHHhhc--CCeEEEEEEcc
Confidence 32 1 1334444455542 46888887643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.14 Score=36.80 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=57.8
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhccC
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~ 185 (279)
..++.+|+=+|+| .|.++..+++.. +++.++.|. ++-.+.+++......+-..+-.. ...++|+++-.--
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence 5677888888865 588888888876 678888887 66667776642222221111111 1225888875421
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+ ..++...+.++ |+|+++++-.
T Consensus 103 -~~---~~~~~~~~~l~---~~G~iv~~G~ 125 (168)
T d1uufa2 103 -AP---HNLDDFTTLLK---RDGTMTLVGA 125 (168)
T ss_dssp -SC---CCHHHHHTTEE---EEEEEEECCC
T ss_pred -cc---hhHHHHHHHHh---cCCEEEEecc
Confidence 11 23566777888 7999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.25 E-value=0.28 Score=34.88 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=57.1
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~v 181 (279)
..+..+|+=+|+| .|..+..+++.. +.+++++|. +.-++.+++.... .++..+-.+. ..++|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~~~~i~~~~ 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGAS-LTVNARQEDPVEAIQRDIGGAHGVLVTAV 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCcc-ccccccchhHHHHHHHhhcCCcccccccc
Confidence 5667788878865 466777777776 589999999 7778888875322 2222111111 123444443221
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
. ...+..+.+.++ |+|+++++-
T Consensus 103 ----~----~~~~~~~~~~l~---~~G~iv~~G 124 (166)
T d1llua2 103 ----S----NSAFGQAIGMAR---RGGTIALVG 124 (166)
T ss_dssp ----C----HHHHHHHHTTEE---EEEEEEECC
T ss_pred ----c----chHHHHHHHHhc---CCcEEEEEE
Confidence 1 235778888999 799998875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.13 E-value=0.19 Score=36.46 Aligned_cols=94 Identities=16% Similarity=0.067 Sum_probs=60.7
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC--CCCCC----C-C-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG--NMFEA----I-P-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~-~-~~D~v~~~~ 180 (279)
..+..+|+=+|||. |..+..+++..--.++++.|. +.-.+.+++......+... +..+. . + ++|+++-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56677888899887 888888888764457999998 7667777764222222111 11111 1 1 489887532
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
- . ...++.+.+.++ |+|+++++..
T Consensus 105 g-----~---~~~~~~a~~~~~---~~G~iv~~G~ 128 (174)
T d1jqba2 105 G-----G---SETLSQAVKMVK---PGGIISNINY 128 (174)
T ss_dssp S-----C---TTHHHHHHHHEE---EEEEEEECCC
T ss_pred C-----C---HHHHHHHHHHHh---cCCEEEEEee
Confidence 1 1 134677778889 7999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=1.9 Score=30.41 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=60.6
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCC-CCC--------CC-ccceeee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNM-FEA--------IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~-~~~--------~~-~~D~v~~ 178 (279)
..+..+|+=+|+|. |..+..+++...-.++++.|. +.-++.+++..........+- ... .+ ++|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678888899865 556666666655447999998 888888887532222222111 100 12 4788775
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.- .. ...++.+.+.++ +||+++++...
T Consensus 104 ~~-----G~---~~~~~~a~~~~~---~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CT-----GA---EASIQAGIYATR---SGGTLVLVGLG 130 (171)
T ss_dssp CS-----CC---HHHHHHHHHHSC---TTCEEEECSCC
T ss_pred cc-----CC---chhHHHHHHHhc---CCCEEEEEecC
Confidence 32 11 246788888999 79999988743
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.07 E-value=0.45 Score=34.03 Aligned_cols=94 Identities=11% Similarity=0.003 Sum_probs=57.5
Q ss_pred hCCCCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--------CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--------IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--------~~-~~D~v~~~ 179 (279)
.++..+||=.|| |.|.++..+++..-..++++.|. ++-.+.+++....-.+...+-.++ .+ ++|+++-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 566778887775 55677778888876678888988 667777876522222211111111 12 48888764
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
- .. ...++.+...++ +||.++++-.
T Consensus 106 ~-----G~---~~~~~~~~~~~~---~g~~~~~v~~ 130 (176)
T d2fzwa2 106 I-----GN---VKVMRAALEACH---KGWGVSVVVG 130 (176)
T ss_dssp S-----CC---HHHHHHHHHTBC---TTTCEEEECS
T ss_pred C-----CC---HHHHHHHHHhhc---CCceeEEEEe
Confidence 2 22 245677778888 6777766543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.14 E-value=1.2 Score=31.76 Aligned_cols=96 Identities=6% Similarity=-0.089 Sum_probs=60.1
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEE--eeCCCCC-C-----CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDF--LGGNMFE-A-----IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~d~~~-~-----~~-~~D~v~~~ 179 (279)
.++..+|+=+|||. |..+..+++.....++++.|. ++-++.+++......+ ...|... . .+ ++|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 56778999999764 556667777776678999998 7778888876322222 2223211 0 12 47877753
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
-- . ...+......+++ ++|+++++-..
T Consensus 105 ~g-----~---~~~~~~~~~~~~~--~~G~~v~vG~~ 131 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYC--GSGVTVVLGLA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT--TTCEEEECCCC
T ss_pred CC-----C---chHHHHHHHHHHH--hcCceEEEEEe
Confidence 21 1 2456666666763 56888887753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.14 E-value=0.33 Score=34.49 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC--CCCC----CCccceeeehhhh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN--MFEA----IPQANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d--~~~~----~~~~D~v~~~~vl 182 (279)
..+..+||=.|+|+ |..+..+++. .+.++++.|. ++-++.+++.....-+...+ +.+. .++.|.++....
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence 56677888888665 5555566665 5568999997 77777777652222211111 1111 123444443322
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
. ...+....++++ |+|+++++.
T Consensus 103 ---~----~~~~~~a~~~l~---~~G~i~~~g 124 (168)
T d1rjwa2 103 ---S----KPAFQSAYNSIR---RGGACVLVG 124 (168)
T ss_dssp ---C----HHHHHHHHHHEE---EEEEEEECC
T ss_pred ---C----HHHHHHHHHHhc---cCCceEecc
Confidence 2 245788889999 799998875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.05 E-value=1.3 Score=31.47 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=58.7
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC--CCCC-----CC-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN--MFEA-----IP-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d--~~~~-----~~-~~D~v~~~~ 180 (279)
..+..+|+-+|+|. |..+..+++.....++++.|. +.-++.+++.. ...++..+ ..+. .+ ++|+++-..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-a~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-ADHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-CSEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-cceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 45678888898764 555567777766668889998 66677777652 22333221 1110 12 478777532
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ...+....+.++ ++|+++++-
T Consensus 109 -----g~---~~~~~~a~~~l~---~~G~iv~~G 131 (172)
T d1h2ba2 109 -----GS---QATVDYTPYLLG---RMGRLIIVG 131 (172)
T ss_dssp -----CC---HHHHHHGGGGEE---EEEEEEECC
T ss_pred -----Cc---chHHHHHHHHHh---CCCEEEEEe
Confidence 11 245788888999 799999876
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.73 Score=32.90 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred hCCCCEEEEecC--CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEe---eCCCCCC-----CC-ccceeee
Q 023625 111 FEGLKSLVDVAG--GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFL---GGNMFEA-----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~---~~d~~~~-----~~-~~D~v~~ 178 (279)
+.+..+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++.... .++ ..|+.+. -+ ++|+++-
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~-~vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAH-EVFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS-EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcc-cccccccccHHHHhhhhhccCCceEEee
Confidence 567789999984 6788888889876 578888876 6667777764211 222 1222111 12 4888876
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. . ...+++..++++ |+|+++.+.
T Consensus 104 ~~-----g----~~~~~~~~~~l~---~~G~iv~~G 127 (174)
T d1yb5a2 104 ML-----A----NVNLSKDLSLLS---HGGRVIVVG 127 (174)
T ss_dssp SC-----H----HHHHHHHHHHEE---EEEEEEECC
T ss_pred cc-----c----HHHHHHHHhccC---CCCEEEEEe
Confidence 32 1 135778888999 799999874
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.51 E-value=1.5 Score=29.59 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=51.4
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhccC
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHNW 185 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~~ 185 (279)
+|+=+|+ |.++..+++.. .+..++++|. ++.++.++.. -.+.++.||..++ ...+|.++.. .
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t 73 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDALVINGDCTKIKTLEDAGIEDADMYIAV-----T 73 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-hhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence 4555554 77877777754 3568999998 8777776542 2578899998863 1257877763 2
Q ss_pred ChhHHHHHHHHHHHhCC
Q 023625 186 NDEESVKLLKKCKEAIP 202 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~ 202 (279)
++++.-.+.....+.+.
T Consensus 74 ~~d~~N~~~~~~~k~~~ 90 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYG 90 (132)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 33444445555666677
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.13 E-value=0.92 Score=32.36 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=52.2
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------CCCeEEe------eCCCCCCCCccceeeehhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------NDNLDFL------GGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~------~~d~~~~~~~~D~v~~~~v 181 (279)
++|.=||+|.-..+.+..-.--+.+++++|. ++.++..+.. .+..... ..|..+..+++|++++.-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v- 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV- 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence 5788888887554443333334678999998 6666655421 0111111 111111134689988742
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+......+++.+.+.++ ++..++
T Consensus 81 ----~~~~~~~~~~~i~~~l~---~~~~iv 103 (184)
T d1bg6a2 81 ----PAIHHASIAANIASYIS---EGQLII 103 (184)
T ss_dssp ----CGGGHHHHHHHHGGGCC---TTCEEE
T ss_pred ----chhHHHHHHHHhhhccC---CCCEEE
Confidence 44556789999999998 455443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.02 E-value=1.7 Score=27.73 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=45.1
Q ss_pred hCCCCEEEEec-CCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 111 FEGLKSLVDVA-GGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 111 ~~~~~~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
+...++|.=|| ||+|--+.+..-+.-+.++++.|. .+..+...+ ..+.+..++-.+..++.|+|+.+..+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~--~Gi~v~~g~~~~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ--AGAKIYIGHAEEHIEGASVVVVSSAI 77 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH--TTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH--CCCeEEECCccccCCCCCEEEECCCc
Confidence 45667888887 778866644443334779999997 333443333 34666666554445678999888776
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.56 E-value=1.4 Score=29.50 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhccCChhHHHHH
Q 023625 122 GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHNWNDEESVKL 193 (279)
Q Consensus 122 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~~~~~~~~~~ 193 (279)
||-|..+..+++...+..++++|. +...+..+. ..+.++.||..++ ...++.+++.. -+|.+...+
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~~n~~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDSETIHC 79 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--TTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--cCccccccccCCHHHHHHhhhhcCcEEEEec----cchhhhHHH
Confidence 466889999999887777888888 666666554 4688999998874 12477777632 134444444
Q ss_pred HHHHHHhCCCCCCCcEEEE
Q 023625 194 LKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 194 L~~~~~~L~~~~pgG~lli 212 (279)
...+ +.+. |..+++.
T Consensus 80 ~~~~-r~~~---~~~~iia 94 (129)
T d2fy8a1 80 ILGI-RKID---ESVRIIA 94 (129)
T ss_dssp HHHH-HHHC---SSSCEEE
T ss_pred HHHH-HHHC---CCceEEE
Confidence 4444 4456 4655544
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=85.37 E-value=1.1 Score=36.28 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC-------CCCeEEEeeChhHHhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF-------PDIKCTVFDLPHVVDNL 152 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~~~a 152 (279)
++...|||+|+|+|.++..+++.. ..+++..++..+.+...
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~ 125 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK 125 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHH
Confidence 345689999999999998887753 23468888885555443
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=85.36 E-value=0.071 Score=34.44 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.4
Q ss_pred CccccccCceeecCCC
Q 023625 1 MRILVHSGFFAQQKDD 16 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~ 16 (279)
||+|+++|+|++++++
T Consensus 61 lr~L~a~gll~~~~d~ 76 (92)
T d1qzza1 61 VRHLTVVGVLEGGEKQ 76 (92)
T ss_dssp HHHHHHTTSEECCCC-
T ss_pred HHHHHHCCCeeeecCC
Confidence 5899999999998763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=85.32 E-value=0.3 Score=37.57 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=43.0
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh-------cccC-------CCCeEEeeCCCCC---C-CCccce
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN-------LQGT-------NDNLDFLGGNMFE---A-IPQANA 175 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-------a~~~-------~~ri~~~~~d~~~---~-~~~~D~ 175 (279)
.+|||.=||.|..+..++.. +++++.++. |.+... +... ..|++++.+|..+ . .+.+|+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 48999999999999999987 578999998 433322 2211 2478899888543 1 123666
Q ss_pred eee
Q 023625 176 VLL 178 (279)
Q Consensus 176 v~~ 178 (279)
|++
T Consensus 168 IYl 170 (250)
T d2oyra1 168 VYL 170 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.17 E-value=4.5 Score=28.32 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=34.8
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGT 155 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 155 (279)
.++..+|+=+|+|. |..+..++++.-..++++.|. ++-++.+++.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 56778899988877 555566777766678999998 7778888876
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=83.79 E-value=2 Score=29.60 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=55.9
Q ss_pred EEEEec--CCccHHHHHHHHHCCCC-eEEEeeChhHHhhcc----------cCCCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 116 SLVDVA--GGTGIMARAIATAFPDI-KCTVFDLPHVVDNLQ----------GTNDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 116 ~vlDvG--~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~----------~~~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
+|.=|| |..|......+...+-+ +.+.+|++...+.++ ....+..+..+|+ +...++|+|++..-.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAGI 80 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEeccc
Confidence 566677 34455544444444444 588999743332222 1235566666664 344578999876443
Q ss_pred ccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 183 HNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 183 h~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..-+.+ ....+++++.+.++..+|++.++++
T Consensus 81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (142)
T d1o6za1 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT 118 (142)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC
T ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 333322 2357777777777655578887775
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.62 E-value=2.3 Score=28.44 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=49.8
Q ss_pred EEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC-------CccceeeehhhhccCC
Q 023625 117 LVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI-------PQANAVLLKWILHNWN 186 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~-------~~~D~v~~~~vlh~~~ 186 (279)
++=+| -|.++..+++.. -+..++++|. ++.++.++.. ....+.+|..++. ..+|.+++... +
T Consensus 3 ~iIiG--~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 3 FAVIG--LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--ATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp EEEEC--CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEC--CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--CCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 44444 467777776654 3567999999 8888887754 3456778887641 24776665321 2
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++....+...+++... ..+++.
T Consensus 75 ~~~~~~~~~~~~~~~~----~~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKELD----IPNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHHTT----CSEEEE
T ss_pred hHHhHHHHHHHHHHcC----CCcEEe
Confidence 3344444555555554 456554
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=83.50 E-value=1.9 Score=29.87 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCCCEEEEecCCc-cHHHH-HHHHHCCCCeEEEeeChhHHhh--------cccCCCCeEEeeCCCCCCCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGT-GIMAR-AIATAFPDIKCTVFDLPHVVDN--------LQGTNDNLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~-G~~~~-~l~~~~p~~~~~~~D~~~~~~~--------a~~~~~ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+...+|.=||+|. |.... .++.+.---+++++|+.+.... +........+..+|+. ...++|+|++..-
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag 81 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAG 81 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEecc
Confidence 3456888898755 44333 3333322347999998432211 1112234555667753 3456898887543
Q ss_pred hccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
...-+.. ...++++++.+.++..+|.+.++++.
T Consensus 82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 2222221 12455666666654444788777643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.03 E-value=0.79 Score=32.73 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.7
Q ss_pred hCCCCEEEEec--CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhcc
Q 023625 111 FEGLKSLVDVA--GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~ 184 (279)
..++.+||=.| |+.|..+..+++.. ++++++.+. ++-.+.+++......+-..+... ...++|+|+-. .
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~--~-- 99 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV--R-- 99 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC--S--
T ss_pred CCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceeeehhhhhhhhhccccccccccc--c--
Confidence 56778888887 45578888899886 578888887 66677776642222221112111 12358988752 2
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+ .+.+..++++ |+|+++.+-.
T Consensus 100 -G~-----~~~~~~~~l~---~~G~~v~~G~ 121 (171)
T d1iz0a2 100 -GK-----EVEESLGLLA---HGGRLVYIGA 121 (171)
T ss_dssp -CT-----THHHHHTTEE---EEEEEEEC--
T ss_pred -ch-----hHHHHHHHHh---cCCcEEEEeC
Confidence 22 2566778899 7999988653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.77 E-value=3.5 Score=28.40 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred CCCCEEEEecCCc-cH-HHHHHHHHCCCCeEEEeeC-hhHHh-------hccc-CCCCeEEeeCCCCCCCCccceeeehh
Q 023625 112 EGLKSLVDVAGGT-GI-MARAIATAFPDIKCTVFDL-PHVVD-------NLQG-TNDNLDFLGGNMFEAIPQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~-~~~ri~~~~~d~~~~~~~~D~v~~~~ 180 (279)
.+..+|.=||+|. |. ++..++...---+++.+|. +...+ .+.. ....+.+..+|+ +...++|+|+...
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-~~l~daDvvvita 82 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-DDCRDADLVVICA 82 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-GGTTTCSEEEECC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-HHhccceeEEEec
Confidence 3457899999754 33 3333444322336999998 43321 1111 234455666665 3455689888744
Q ss_pred hhccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
-....+.+ ...++++++.+.++..+|++.++++
T Consensus 83 g~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivv 122 (148)
T d1ldna1 83 GANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (148)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Confidence 33222111 2244555555444332368877764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=81.36 E-value=2.4 Score=26.57 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=41.3
Q ss_pred EEEec-CCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhc
Q 023625 117 LVDVA-GGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILH 183 (279)
Q Consensus 117 vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh 183 (279)
|-=|| ||+|--+.+..-+..+.++++.|+ .+..+..+.. .+++..+.-.+.+.++|+|+.+..+-
T Consensus 4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~--Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKL--GIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHT--TCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHC--CCeEEeeecccccCCCCEEEEecCcC
Confidence 33445 778877665555556889999998 3444444433 45555553333355789999888774
|