Citrus Sinensis ID: 023628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHccEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEccccccccccHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msnphsdtiplhassqsdIDEIENLinaspatvlparppspprpatipvssapfiqsnippppptssnqkvpsvpvppplpsstisggsrpniastgfgsppntltepvwDTVKRDLSRIVSNLklvvfpnpyredpgkalrdwdlwgpFFFIVFLGLtlswsasvkKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLsllgyclfpLDIGALICMLKDNVLVKVIVVCVTLAwsswaaypfmssavnprrkALALYPVFLMYVSVGFLIIAID
Flexible Loop (DISEMBL)
msnphsdtiplhassqSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIAStgfgsppntltePVWDTVKRDLSRIVsnlklvvfpnpyreDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Low Complexity Region (SEG)
MSNPHSDTIPLHASSQSDIDEIENLINASpatvlparppspprpatipvsSAPFIQSNIpppppTSSNQKvpsvpvppplpssTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEvfavafallaagavILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNvlvkvivvcvTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Disordered region (IsUnstruct)
*********************************************************************************************************TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAI*
Disordered Region (DISOPRED)
******D*************************************************************************************************LTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Disordered Region (DISEMBL)
***********HASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPP**************PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Disordered Region (DISPRO)
***************QSDIDEIENLINASPA**********************************************************************PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q28CH8	233	Protein YIPF6 OS=Xenopus	yes	no	0.655	0.785	0.385	1e-30
Q4QQU5	236	Protein YIPF6 OS=Rattus n	yes	no	0.655	0.775	0.397	2e-29
Q96EC8	236	Protein YIPF6 OS=Homo sap	yes	no	0.609	0.720	0.407	3e-29
Q8BR70	236	Protein YIPF6 OS=Mus musc	yes	no	0.609	0.720	0.405	8e-29
Q54RZ2	182	Protein YIPF6 homolog OS=	yes	no	0.616	0.945	0.423	1e-28
A6QLC6	236	Protein YIPF6 OS=Bos taur	yes	no	0.612	0.724	0.394	3e-28
Q6IQ85	240	Protein YIPF6 OS=Danio re	yes	no	0.609	0.708	0.391	3e-28
Q9P6P8	225	Protein YIP4 OS=Schizosac	yes	no	0.741	0.92	0.321	6e-24
P53093	235	Protein YIP4 OS=Saccharom	yes	no	0.641	0.761	0.307	1e-08
Q6NYF1	237	Protein YIPF4 OS=Danio re	no	no	0.573	0.675	0.246	3e-06

>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 114/197 (57%), Gaps = 14/197 (7%)

Query: 93  IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 152
           +AST      +TL EPV DT+ RDL  + +    V++P    +     LRDWDLWGP   
Sbjct: 38  MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVL 93

Query: 153 IVFLGLTLSWSASVKKSE---VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYC 209
            V L L L    +  K +    FA  F ++  GAV++TLN  LLGG I FFQSL +LGYC
Sbjct: 94  CVSLALMLQGGNADSKDDGGPQFAEVFVIIWFGAVVITLNSKLLGGTISFFQSLCVLGYC 153

Query: 210 LFPLDIGALICML-------KDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALY 262
           + PL +  L+C L         + +V+++VV V  AWS++A+  F++ +  P R+ALA+Y
Sbjct: 154 ILPLTVAMLVCRLVLLLSHTTASFIVRLVVVTVMFAWSTFASTAFLADSQPPNRRALAVY 213

Query: 263 PVFLMYVSVGFLIIAID 279
           P+FL Y  + ++++  +
Sbjct: 214 PIFLFYFVISWMVLTFN 230

Xenopus tropicalis (taxid: 8364)

>sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 109/204 (53%), Gaps = 21/204 (10%)

Query: 84  TISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRD 143
           TI  G+R     +      +TL E +  T+ RDL  +      V++P          LRD
Sbjct: 39  TIPSGTRAQECDS------STLNESIRRTIMRDLKAVGRKFMHVLYP----RKSNTLLRD 88

Query: 144 WDLWGPFFFIVFLGLTLSWSASVKKSE----VFAVAFALLAAGAVILTLNVLLLGGHIIF 199
           WDLWGP    V L L L  S+   K +     FA  F ++  GAV +TLN  LLGG+I F
Sbjct: 89  WDLWGPLILCVSLALMLQKSSVEGKRDGGSPEFAEVFVIIWFGAVTITLNSKLLGGNISF 148

Query: 200 FQSLSLLGYCLFPLDIGALICMLK-------DNVLVKVIVVCVTLAWSSWAAYPFMSSAV 252
           FQSL +LGYC+ PL+I  LIC L         N ++++ VV V  AWS  A+  F++   
Sbjct: 149 FQSLCVLGYCVLPLNIAMLICRLLLLAGQGPINFMIRLFVVLVMFAWSVIASTAFLADCQ 208

Query: 253 NPRRKALALYPVFLMYVSVGFLII 276
            P RKALA+YPVFL Y  V ++I+
Sbjct: 209 PPNRKALAVYPVFLFYFVVSWMIL 232

Rattus norvegicus (taxid: 10116)

>sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 14/184 (7%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESVRNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQR 107

Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALI 219
            ++  + +    FA  F ++  GAV +TLN  LLGG+I FFQSL +LGYC+ PL +  LI
Sbjct: 108 DSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLTVAMLI 167

Query: 220 C---MLKD----NVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG 272
           C   +L D    N +V++ VV V  AWS  A+  F++ +  P R+ALA+YPVFL Y  + 
Sbjct: 168 CRLVLLADPGPVNFMVRLFVVIVMFAWSIVASTAFLADSQPPNRRALAVYPVFLFYFVIS 227

Query: 273 FLII 276
           ++I+
Sbjct: 228 WMIL 231

Homo sapiens (taxid: 9606)

>sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E +  T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESIRRTIMRDLKAVGRKFMHVLYP----RKSNALLRDWDLWGPLILCVTLALMLQK 107

Query: 163 SASVKKSE----VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGAL 218
           S+   K++     FA  F ++  GAV +TLN  LLGG+I FFQSL +LGYC+ PL+I  L
Sbjct: 108 SSIDGKNDGGGPEFAEVFVIIWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLNIAML 167

Query: 219 ICMLK-------DNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSV 271
           IC L         N ++++ VV +  AWS  A+  F++ +  P RKALA+YPVFL Y  +
Sbjct: 168 ICRLLLLAGQGPINFMIRLFVVLLMFAWSVVASTAFLADSQPPNRKALAVYPVFLFYFVI 227

Query: 272 GFLII 276
            ++I+
Sbjct: 228 SWMIL 232

Mus musculus (taxid: 10090)

>sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 109/177 (61%), Gaps = 5/177 (2%)

Query: 102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
           PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct: 7   PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query: 162 WSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICM 221
            SA  +K+  F + F ++  GA I+T+N  LL G+I FFQS+ +LGYC+FPL I  +I  
Sbjct: 64  ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLLCGNISFFQSVCILGYCIFPLTIATIIIW 123

Query: 222 LKDN--VLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLII 276
           +  N  ++VK+ +V     WSS+A+Y F+ S+V   R+ LA+YPV L Y+ + +L++
Sbjct: 124 IIQNFTMIVKLPIVGGAWFWSSFASYGFLGSSVPESRRLLAVYPVLLFYLVIAWLVV 180

Dictyostelium discoideum (taxid: 44689)

>sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 14/185 (7%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL E V +T+ RDL  +      V++P          LRDWDLWGP    V L L L  
Sbjct: 52  STLNESVQNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALMLQR 107

Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALI 219
            +   + +    FA  F ++  GAV +TLN  LLGG+I FFQSL +LGYC+ PL +  L+
Sbjct: 108 GSVDSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLTMAMLV 167

Query: 220 CMLK-------DNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG 272
           C L         N +V++ VV +  AWS  A+  F++ +  P RKALA+YPVFL Y  + 
Sbjct: 168 CRLVLLAEPGPVNFMVRLFVVIIMFAWSIVASTAFLADSQPPNRKALAVYPVFLFYFVIS 227

Query: 273 FLIIA 277
           ++I+ 
Sbjct: 228 WMILT 232

Bos taurus (taxid: 9913)

>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 108/184 (58%), Gaps = 14/184 (7%)

Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
           +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L  
Sbjct: 55  STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALMLQG 110

Query: 163 SASVKKSE---VFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALI 219
            ++  + +    FA  F ++  G+VI+TLN  LLGG I FFQSL +LGYC+ PL +  ++
Sbjct: 111 GSADSEEDGRPQFAEVFVIIWFGSVIITLNSKLLGGTISFFQSLCVLGYCILPLTVAMIV 170

Query: 220 CML----KDNVL---VKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG 272
           C +       V+   V++IVV  + +WS++A+  F++ +    RKAL +YPVFL Y  +G
Sbjct: 171 CRIVLLGGSGVVSFAVRLIVVTASFSWSTFASTAFLADSQPTNRKALVVYPVFLFYFVIG 230

Query: 273 FLII 276
           ++I+
Sbjct: 231 WMIL 234

Danio rerio (taxid: 7955)

>sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 56  QSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKR 115
             N+    P  S+  V S  + P      I+G S   I  T F +  ++L EP+  T+  
Sbjct: 16  MENLLRMDPVRSSLDVESRAIEP----DNIAGES---IVETRF-TGGDSLDEPIRVTLFN 67

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSA-SVKKSEVFAV 174
           +   I   L  V++P        + LRDWDLWGP  F + + L L+ S   +++  VF V
Sbjct: 68  EFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALALALSTDKIERESVFTV 122

Query: 175 AFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVC 234
             AL+  G  + +LN+ LLG +I  FQS+ +LGY  FPL I +++C     + +++ V+ 
Sbjct: 123 VVALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPVIV 182

Query: 235 VTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLI 275
              AW+ +AA   + ++    +K LA+YP+FL Y S+ ++I
Sbjct: 183 AMYAWTLFAAMGVLQNSNLSNKKLLAVYPLFLFYFSLAWII 223

May be involved in proper membrane localization of Rab GTPases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53093|YIP4_YEAST Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP4 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 97/218 (44%), Gaps = 39/218 (17%)

Query: 86  SGGSRPNIASTGFGS-PPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------PYREDPG 138
           SGG   NI  T   S    TL E V  T+KRD+  I S LK VV+P+      P  +  G
Sbjct: 24  SGGVADNIGGTMQNSGSRGTLDETVLQTLKRDVVEINSRLKQVVYPHFPSFFSPSDDGIG 83

Query: 139 KALRD----WDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLG 194
            A  D     DLW P  FI+   L +S + S+  S   +  F LL     ++ L++ L  
Sbjct: 84  AADNDISANCDLWAPLAFIILYSLFVSHARSLFSSLFVSSWFILL-----VMALHLRLTK 138

Query: 195 GH--IIFFQSLSLLGYCLFPLDIGALICML---------KDNV-------LVKVIVVCVT 236
            H  +     +S+ GYCLFP  + AL+  +         K N        LVK++V+ + 
Sbjct: 139 PHQRVSLISYISISGYCLFPQVLNALVSQILLPLAYHIGKQNRWIVRVLSLVKLVVMALC 198

Query: 237 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFL 274
           L WS  A      S V   +  + +YP+ L    + +L
Sbjct: 199 LMWSVAAV-----SWVTKSKTIIEIYPLALCLFGMAWL 231

May be involved in proper membrane localization of Rab GTPases.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6NYF1|YIPF4_DANRE Protein YIPF4 OS=Danio rerio GN=yipf4 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDW-DLWGPFFFIVFLGLTLSWSA 164
           T+P+ + +  DL  I   ++ V+ P P      + +RD  D WGP   +    L  S  +
Sbjct: 67  TKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVV----LLFSMIS 122

Query: 165 SVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGA-LICMLK 223
              +  V +    +   G++ + L   +LGG + + Q L ++GY L PL + A L+ ++ 
Sbjct: 123 IYGQFRVVSWIITIWIFGSLTIFLLARVLGGEVSYGQVLGVIGYSLLPLIVIAPLLLVIG 182

Query: 224 DNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYV 269
              +V  ++    + W++++A   +       +K L +YP+FL+Y+
Sbjct: 183 GFEVVSTLIKLFGVFWAAYSAASLLVGDEFKTKKPLLIYPIFLLYI 228

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
18398861	281	Integral membrane Yip1-like protein [Ara	0.971	0.964	0.823	1e-107
449451761	278	PREDICTED: protein YIPF6-like [Cucumis s	0.974	0.978	0.863	1e-106
226491019	274	LOC100284081 [Zea mays] gi|195639364|gb|	0.960	0.978	0.782	1e-106
297836756	278	integral membrane Yip1 family protein [A	0.974	0.978	0.820	1e-106
21553537	281	unknown [Arabidopsis thaliana]	0.971	0.964	0.816	1e-106
242055099	274	hypothetical protein SORBIDRAFT_03g04099	0.971	0.989	0.769	1e-106
226508090	276	yip1 domain family member 6 [Zea mays] g	0.974	0.985	0.777	1e-106
225446060	282	PREDICTED: protein YIPF6 [Vitis vinifera	0.982	0.971	0.857	1e-105
224125970	284	predicted protein [Populus trichocarpa]	0.974	0.957	0.845	1e-105
224143749	283	predicted protein [Populus trichocarpa]	0.974	0.961	0.833	1e-105

>gi|18398861|ref|NP_565442.1| Integral membrane Yip1-like protein [Arabidopsis thaliana] gi|4185150|gb|AAD08953.1| expressed protein [Arabidopsis thaliana] gi|20197033|gb|AAM14883.1| expressed protein [Arabidopsis thaliana] gi|87116642|gb|ABD19685.1| At2g18840 [Arabidopsis thaliana] gi|330251718|gb|AEC06812.1| Integral membrane Yip1-like protein [Arabidopsis thaliana]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/283 (82%), Positives = 251/283 (88%), Gaps = 12/283 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+PP  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRD
Sbjct: 62  SNLPPLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 177 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVT 236
           ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K++VV VT
Sbjct: 179 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVT 238

Query: 237 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 239 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451761|ref|XP_004143629.1| PREDICTED: protein YIPF6-like [Cucumis sativus] gi|449520002|ref|XP_004167023.1| PREDICTED: protein YIPF6-like [Cucumis sativus]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/279 (86%), Positives = 258/279 (92%), Gaps = 7/279 (2%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    P+TVLPARPPSPPR A+IPVSS+PF+QSN+P
Sbjct: 3   HSDTIPLHQSSQSDIDEIENLINASVQTGPSTVLPARPPSPPR-ASIPVSSSPFLQSNLP 61

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P PP S+ QK P+V      P   +SG  RP+++++GFGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 62  PLPPKSTIQKPPTVFPT--PPPLPVSGNGRPDLSASGFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 180
           VSNLKLVVFPNP+REDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA
Sbjct: 120 VSNLKLVVFPNPFREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 179

Query: 181 AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWS 240
           AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNV+VK++VVCVTLAWS
Sbjct: 180 AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVVVKIVVVCVTLAWS 239

Query: 241 SWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           SWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Sbjct: 240 SWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491019|ref|NP_001150451.1| LOC100284081 [Zea mays] gi|195639364|gb|ACG39150.1| yip1 domain family member 6 [Zea mays]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/285 (78%), Positives = 249/285 (87%), Gaps = 17/285 (5%)

Query: 1   MSNPHSDTIPLH-ASSQSDIDEIENLINA--SPATVLPARPPSPPRPATIPVSSAPFIQS 57
           MS+ H DTIPLH +S+QSD+DEIE+LI+A  SPATVLPARPPSP R A+IPVSS+P    
Sbjct: 1   MSHNHGDTIPLHPSSAQSDMDEIESLIHAAPSPATVLPARPPSPTR-ASIPVSSSP---- 55

Query: 58  NIPPPPPTSSNQKVPSVPV---PPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVK 114
             P P PT       S+P+   P P+P+S     S P I + GFGSPPNTLTEPVWDT+K
Sbjct: 56  -APAPVPTKPPFPAASIPISVSPVPVPASV----SVP-IGADGFGSPPNTLTEPVWDTIK 109

Query: 115 RDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV 174
           RDL+RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV
Sbjct: 110 RDLARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAV 169

Query: 175 AFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVC 234
           AFA+LAAGA+ILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GAL+CMLKDNV++K++VV 
Sbjct: 170 AFAVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIVVVT 229

Query: 235 VTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           +TLAWSSWAAYPFMS+AVNPRRKALALYPVFLMY+SVGFLIIAID
Sbjct: 230 ITLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVGFLIIAID 274

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836756|ref|XP_002886260.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297332100|gb|EFH62519.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 248/279 (88%), Gaps = 7/279 (2%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP+    SS+PF+QSN+P
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSPFMQSNLP 62

Query: 61  PPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRI 120
           P  P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTVKRDLSRI
Sbjct: 63  PLHPSSSAQKVTPVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVKRDLSRI 119

Query: 121 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 180
           VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA
Sbjct: 120 VSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLA 179

Query: 181 AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWS 240
           AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K++VV VTLAWS
Sbjct: 180 AGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWS 239

Query: 241 SWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           SWAAYPFMS+AVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 240 SWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAIN 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553537|gb|AAM62630.1| unknown [Arabidopsis thaliana]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/283 (81%), Positives = 249/283 (87%), Gaps = 12/283 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSA----PFIQ 56
             DT+PLH SSQSDIDEIENLIN S    P TVL ARPPSP RP +IPVSS+    PF+Q
Sbjct: 3   QGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRP-SIPVSSSSSSSPFMQ 61

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           SN+P   P+SS QKV  VPVPPPLP+ + S   +    ++ FGSPPNTLTEPVWDTV RD
Sbjct: 62  SNLPXLHPSSSAQKVTHVPVPPPLPAVSNSSNFQ---GASAFGSPPNTLTEPVWDTVXRD 118

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 177 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVT 236
           ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDNV++K++VV VT
Sbjct: 179 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVT 238

Query: 237 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 239 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055099|ref|XP_002456695.1| hypothetical protein SORBIDRAFT_03g040990 [Sorghum bicolor] gi|241928670|gb|EES01815.1| hypothetical protein SORBIDRAFT_03g040990 [Sorghum bicolor]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/282 (76%), Positives = 244/282 (86%), Gaps = 11/282 (3%)

Query: 1   MSNPHSDTIPLH-ASSQSDIDEIENLINA--SPATVLPARPPSPPRPATIPVSSAPFIQS 57
           MS+ HSDTIPLH +S+QSD+DEIE+LI+A  SPATVLPARPPSP R A+IPVSS+P    
Sbjct: 1   MSHNHSDTIPLHPSSAQSDMDEIESLIHAAPSPATVLPARPPSPTR-ASIPVSSSP---- 55

Query: 58  NIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDL 117
               P P  +   +P+  +P  +  S +       I + GFG PPNTLTEPVWDTVKRDL
Sbjct: 56  ---APAPVPTKPPLPAASIPISVSVSPVPASVSVPIGADGFGPPPNTLTEPVWDTVKRDL 112

Query: 118 SRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 177
           +RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA
Sbjct: 113 ARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFA 172

Query: 178 LLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTL 237
           +LAAGA+ILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GAL+CMLKDNV++K++VV +TL
Sbjct: 173 VLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIVVVTITL 232

Query: 238 AWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           AWSSWAAYPFMS+AVNPRRKALALYPVFLMY+SVGFLIIAID
Sbjct: 233 AWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVGFLIIAID 274

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226508090|ref|NP_001147666.1| yip1 domain family member 6 [Zea mays] gi|194689264|gb|ACF78716.1| unknown [Zea mays] gi|194700308|gb|ACF84238.1| unknown [Zea mays] gi|195612948|gb|ACG28304.1| yip1 domain family member 6 [Zea mays] gi|413951810|gb|AFW84459.1| putative Yip1 domain family member 6 [Zea mays]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/283 (77%), Positives = 247/283 (87%), Gaps = 11/283 (3%)

Query: 1   MSNPHSDTIPLH-ASSQSDIDEIENLINA--SPATVLPARPPSPPRPATIPVSSAPFIQ- 56
           MS+ H DTIPLH +S+QSD+DEIE+LI+A  SPATVLPARPPSP R A+IPVSS+P +  
Sbjct: 1   MSHNHGDTIPLHPSSAQSDMDEIESLIHAAPSPATVLPARPPSPTR-ASIPVSSSPALAP 59

Query: 57  SNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRD 116
           + +P  PP  +     SV V P L S ++       I + GFG PPNTLTEPVWDTVKRD
Sbjct: 60  APVPTKPPLPAASIPISVSVSPVLTSVSVP------IGADGFGPPPNTLTEPVWDTVKRD 113

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           L+RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 114 LARIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 173

Query: 177 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVT 236
           A+LAAGA+ILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GAL+CMLKDNV++K++VV +T
Sbjct: 174 AVLAAGAIILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALLCMLKDNVILKIVVVTIT 233

Query: 237 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           LAWSSWAAYPFMS+AVNPRRKALALYPVFLMY+SVGFLIIAID
Sbjct: 234 LAWSSWAAYPFMSAAVNPRRKALALYPVFLMYISVGFLIIAID 276

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446060|ref|XP_002271751.1| PREDICTED: protein YIPF6 [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/281 (85%), Positives = 253/281 (90%), Gaps = 7/281 (2%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           HSDTIPLH SSQSDIDEIENLINAS    PATVLPARPPSPPR A+IPVSS PFIQSNIP
Sbjct: 3   HSDTIPLHPSSQSDIDEIENLINASVQSGPATVLPARPPSPPR-ASIPVSSTPFIQSNIP 61

Query: 61  PPP--PTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLS 118
           PP          V    VPPPLP+++ S  +RP+I ++GFGS  NTLTEPVWDTVKRDLS
Sbjct: 62  PPTYNKPPVVPAVVPAAVPPPLPNTSNSSSTRPSIGASGFGSQANTLTEPVWDTVKRDLS 121

Query: 119 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 178
           RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL
Sbjct: 122 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 181

Query: 179 LAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLA 238
           LAAGA+ILTLNVLLLGGHIIFFQS+SLLGYCLFPLD+GALICMLKDNV+VKVIVVCVTLA
Sbjct: 182 LAAGAIILTLNVLLLGGHIIFFQSISLLGYCLFPLDVGALICMLKDNVIVKVIVVCVTLA 241

Query: 239 WSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           WSSWAAYPFMSSAVNPRRKALALYPV LMYVSVGFLIIAID
Sbjct: 242 WSSWAAYPFMSSAVNPRRKALALYPVLLMYVSVGFLIIAID 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125970|ref|XP_002329629.1| predicted protein [Populus trichocarpa] gi|222870510|gb|EEF07641.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 251/284 (88%), Gaps = 12/284 (4%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVSS+PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSSSPFIQSNLP 60

Query: 61  PPPPTSSN---QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKR 115
           PPP  +     QK PS     PLP    S G+    NIA+TGFGS PNTLTEPVWDT+KR
Sbjct: 61  PPPAQAQLPTLQKPPSAVPSAPLPPLPPSTGNSAGGNIAATGFGSLPNTLTEPVWDTIKR 120

Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA 175
           DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA
Sbjct: 121 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVA 180

Query: 176 FALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCV 235
           FALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCL PLDIGA ICMLKDNV++KVIVV V
Sbjct: 181 FALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLVPLDIGAFICMLKDNVIIKVIVVFV 240

Query: 236 TLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           TLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID
Sbjct: 241 TLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143749|ref|XP_002325060.1| predicted protein [Populus trichocarpa] gi|118484354|gb|ABK94054.1| unknown [Populus trichocarpa] gi|222866494|gb|EEF03625.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/283 (83%), Positives = 251/283 (88%), Gaps = 11/283 (3%)

Query: 5   HSDTIPLHASSQSDIDEIENLINAS----PATVLPARPPSPPRPATIPVSSAPFIQSNIP 60
           +SDTIPLHASSQSDIDEIENLIN+S    P+TVLPARPPSPPR   IPVS++PFIQSN+P
Sbjct: 4   NSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPR---IPVSASPFIQSNLP 60

Query: 61  PPPPTSSN--QKVPSVPVPPPLPSSTISGGSRP--NIASTGFGSPPNTLTEPVWDTVKRD 116
           PP P      QK PS+    PLP    S G+    N ++ GFGSPPNTLTEPVWDTVKRD
Sbjct: 61  PPQPKPQPTIQKPPSIFPSAPLPPLPPSSGNSAGGNFSAAGFGSPPNTLTEPVWDTVKRD 120

Query: 117 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 176
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF
Sbjct: 121 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 180

Query: 177 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVT 236
           ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GAL+CMLKDNV++KVIVV V 
Sbjct: 181 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVIIKVIVVSVA 240

Query: 237 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
           LAWSSWAAYPFMSSAVNPRRKAL+LYPVFLMYVSVGFLIIAID
Sbjct: 241 LAWSSWAAYPFMSSAVNPRRKALSLYPVFLMYVSVGFLIIAID 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2128926	280	AT4G30260 "AT4G30260" [Arabido	0.985	0.982	0.658	4e-90
TAIR|locus:2044455	281	AT2G18840 "AT2G18840" [Arabido	0.967	0.960	0.675	1.1e-89
WB|WBGene00012208	240	W02D9.2 [Caenorhabditis elegan	0.616	0.716	0.370	2.2e-27
DICTYBASE|DDB_G0282825	182	yipf6 "Yip1 domain-containing	0.616	0.945	0.389	7.3e-27
ASPGD|ASPL0000003463	302	AN5926 [Emericella nidulans (t	0.487	0.450	0.343	3.9e-24
FB|FBgn0031600	224	CG3652 [Drosophila melanogaste	0.666	0.830	0.316	4.2e-24
UNIPROTKB|G4N4V5	317	MGG_06025 "Yip1 domain-contain	0.487	0.429	0.35	1e-23
CGD|CAL0004894	297	orf19.6756 [Candida albicans (	0.480	0.451	0.352	1.3e-23
UNIPROTKB|Q5ADT5	297	CaO19.14048 "Putative uncharac	0.480	0.451	0.352	1.3e-23
UNIPROTKB|E1BZJ1	234	YIPF6 "Uncharacterized protein	0.609	0.726	0.353	1.8e-23

TAIR|locus:2128926 AT4G30260 "AT4G30260" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 183/278 (65%), Positives = 199/278 (71%)

Query:     5 HSDTIPLHASSQSDIDEIENLINASXXXXXXXXXXX---XXXXXXXXXXSAPFIQSNIXX 61
             H+DTIPL+ SSQSDIDEIEN++N S                        S+PF+QSN+  
Sbjct:     3 HNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVSSSPFVQSNLPP 62

Query:    62 XXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIV 121
                +SS+               +       +I  +GFGSPPNTLTEPVWDTVKRDLSRIV
Sbjct:    63 LPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLSRIV 122

Query:   122 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXX 181
             SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE           
Sbjct:   123 SNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAA 182

Query:   182 XXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLAWSS 241
                ILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDN          TLAWSS
Sbjct:   183 GAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAWSS 242

Query:   242 WAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
             WAAYPFMS+AVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct:   243 WAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAIN 280

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2044455 AT2G18840 "AT2G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 189/280 (67%), Positives = 198/280 (70%)

Query:     7 DTIPLHASSQSDIDEIENLINASXXXXXXXXXXXX-------XXXXXXXXXSAPFIQSNI 59
             DT+PLH SSQSDIDEIENLIN S                            S+PF+QSN+
Sbjct:     5 DTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFMQSNL 64

Query:    60 XXXXXTSSNQKXXXXXXXXXXXXXTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSR 119
                  +SS QK              +S  S    AS  FGSPPNTLTEPVWDTVKRDLSR
Sbjct:    65 PPLHPSSSAQKVTHVPVPPPLPA--VSNSSNFQGASA-FGSPPNTLTEPVWDTVKRDLSR 121

Query:   120 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXX 179
             IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSE         
Sbjct:   122 IVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALL 181

Query:   180 XXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLAW 239
                  ILTLNVLLLGGHIIFFQSLSLLGYCLFPLD+GA+ICMLKDN          TLAW
Sbjct:   182 AAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLAW 241

Query:   240 SSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 279
             SSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct:   242 SSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

WB|WBGene00012208 W02D9.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 66/178 (37%), Positives = 96/178 (53%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL EPVWDTVKRD+  + +    VV P+    D  + LRDWDLWGP F  V L L L  
Sbjct:    64 DTLEEPVWDTVKRDVLTVGAKFTHVVLPHG---DKQQLLRDWDLWGPLFICVGLALLLQH 120

Query:   163 SASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICML 222
             +   + +               I+T N+ LLGG+I FFQSL ++GYCL P  + A++C L
Sbjct:   121 NGGTESAPQFTQVFTITFFGSVIVTANIKLLGGNISFFQSLCVIGYCLLPPFVAAVLCSL 180

Query:   223 KDNXXXXXXXXXXT---LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIA 277
               +          T     WS++A+  F++     +++ L +YPVFL Y  V ++II+
Sbjct:   181 FLHGIAFPLRLLITSIGFVWSTYASMGFLAGCQPDKKRLLVIYPVFLFYFVVSWMIIS 238

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

DICTYBASE|DDB_G0282825 yipf6 "Yip1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 69/177 (38%), Positives = 96/177 (54%)

Query:   102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
             PNTL EPV  T+ RDL  I   L  V+ P   R +    LRDWDLWGP    + + + LS
Sbjct:     7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63

Query:   162 WSASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICM 221
              SA  +K+               I+T+N  LL G+I FFQS+ +LGYC+FPL I  +I  
Sbjct:    64 ISAEEQKALEFTIVFVVVWCGAAIVTVNGQLLCGNISFFQSVCILGYCIFPLTIATIIIW 123

Query:   222 LKDNXXXXXXXXXXTLAW--SSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLII 276
             +  N            AW  SS+A+Y F+ S+V   R+ LA+YPV L Y+ + +L++
Sbjct:   124 IIQNFTMIVKLPIVGGAWFWSSFASYGFLGSSVPESRRLLAVYPVLLFYLVIAWLVV 180

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000003463 AN5926 [Emericella nidulans (taxid:162425)]

 Score = 215 (80.7 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 47/137 (34%), Positives = 69/137 (50%)

Query:   139 KALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHII 198
             + LRDWDLWGP  F + L + LS +   +                 ++TL + LLGG+I 
Sbjct:   162 EGLRDWDLWGPLIFCLLLSMFLSMAKGDQSDLVFSGVFSLVWVGEAVVTLQIKLLGGNIS 221

Query:   199 FFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLAWSSWAAYPFMS-SAVNPRRK 257
             FFQS+ ++GY LFPL I AL+                 +AWS  A    +  S V   R 
Sbjct:   222 FFQSICIIGYTLFPLVIAALLSAFGLPTIVRIPVYLVLIAWSLAAGVSILGGSGVVRNRV 281

Query:   258 ALALYPVFLMYVSVGFL 274
              +A+YP+F+ Y+++G L
Sbjct:   282 GIAVYPLFVFYIAIGCL 298

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

FB|FBgn0031600 CG3652 [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 64/202 (31%), Positives = 101/202 (50%)

Query:    88 GSRPNIASTGFGSPP-NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDL 146
             G R   A++  G P  NTL EP+ +TV RD+  +      V++P    ++    LRDWDL
Sbjct:    25 GKRTTTATSASGVPEYNTLDEPIRETVLRDIRAVGIKFYHVLYP----KEKSSLLRDWDL 80

Query:   147 WGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXX----XXILTLNVLLLGGHIIFFQS 202
             WGP     F+   L  S++                       ++TLN  LLGG+I FFQS
Sbjct:    81 WGPLVLCTFMATILQGSSTADSMSDNGPEFAQVFVIVWIGAAVVTLNSKLLGGNISFFQS 140

Query:   203 LSLLGYCLFPLDIGALIC---MLKDNXXXXXXXXXXT----LAWSSWAAYPFMSSAVNPR 255
             + +LGYCL P+ I  ++C   +L             T     AW+++A++ F+  +  P 
Sbjct:   141 VCVLGYCLTPVAISLIVCRVILLATQTRLLFFLRFVTTTIGFAWATYASFVFLGQSQPPH 200

Query:   256 RKALALYPVFLMYVSVGFLIIA 277
             RK LA+YP+FL +  + +L+++
Sbjct:   201 RKPLAVYPIFLFFFIISWLVLS 222

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|G4N4V5 MGG_06025 "Yip1 domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 210 (79.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 49/140 (35%), Positives = 71/140 (50%)

Query:   137 PGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXX-XXXXILTLNVLLLGG 195
             PG  LRDWDLWGP  F + L L LS++AS  + +               ++TL + LLGG
Sbjct:   173 PG--LRDWDLWGPLIFCLLLSLLLSFNASASQKDLVFSGVFAMVWIGEAVVTLQIKLLGG 230

Query:   196 HIIFFQSLSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTLAWSSWAAYPFMS-SAVNP 254
             +I F QS+ ++GY LFPL I +L+                 + W+  A    +  S V  
Sbjct:   231 NISFAQSVCIIGYTLFPLVIASLLSAFNLYWIARIPVYLVLIGWAMAAGVSILGGSGVVN 290

Query:   255 RRKALALYPVFLMYVSVGFL 274
              R  LA+YP+F+ Y+ +G L
Sbjct:   291 NRVGLAVYPLFVFYLGLGCL 310

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

CGD|CAL0004894 orf19.6756 [Candida albicans (taxid:5476)]

 Score = 207 (77.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 48/136 (35%), Positives = 70/136 (51%)

Query:   143 DWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQS 202
             DWDLWGP  F +   + L+++   + +E              ++ LNV LLGG I F  +
Sbjct:   160 DWDLWGPLIFSLVFAIVLAFTNESQSTEVFSGSFAFIWIFYFVIGLNVQLLGGTISFLSA 219

Query:   203 LSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTL-AWSSWAAYPFMS-SAVNPRRKALA 260
             +S +GY +FP+ IG +IC L  +           L AWS +A    +  S V P R ALA
Sbjct:   220 ISAIGYSMFPIVIGEVICTLLIHWRWIRLLIMLVLNAWSIYAGVMSVKCSGVFPGRVALA 279

Query:   261 LYPVFLMYVSVGFLII 276
             +YPV L Y  + +L+I
Sbjct:   280 MYPVGLFYSVLSWLVI 295

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0017137 "Rab GTPase binding" evidence=IEA

UNIPROTKB|Q5ADT5 CaO19.14048 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 207 (77.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 48/136 (35%), Positives = 70/136 (51%)

Query:   143 DWDLWGPFFFIVFLGLTLSWSASVKKSEXXXXXXXXXXXXXXILTLNVLLLGGHIIFFQS 202
             DWDLWGP  F +   + L+++   + +E              ++ LNV LLGG I F  +
Sbjct:   160 DWDLWGPLIFSLVFAIVLAFTNESQSTEVFSGSFAFIWIFYFVIGLNVQLLGGTISFLSA 219

Query:   203 LSLLGYCLFPLDIGALICMLKDNXXXXXXXXXXTL-AWSSWAAYPFMS-SAVNPRRKALA 260
             +S +GY +FP+ IG +IC L  +           L AWS +A    +  S V P R ALA
Sbjct:   220 ISAIGYSMFPIVIGEVICTLLIHWRWIRLLIMLVLNAWSIYAGVMSVKCSGVFPGRVALA 279

Query:   261 LYPVFLMYVSVGFLII 276
             +YPV L Y  + +L+I
Sbjct:   280 MYPVGLFYSVLSWLVI 295

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BZJ1 YIPF6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/184 (35%), Positives = 91/184 (49%)

Query:   103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
             +TL EPV DT+ RDL  +      V++P    +     LRDWDLWGP    V L L L  
Sbjct:    50 STLDEPVRDTILRDLKAVGKKFVHVMYP----KKSSALLRDWDLWGPLVLCVSLALMLQG 105

Query:   163 SASVKKSEXXXXXXXXXXXX---XXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALI 219
              ++  K +                 ++TLN  LLGG I FFQSL +LGYC+ PL +  L+
Sbjct:   106 GSADSKEDGGPQFAEVFVIIWFGAVVITLNSKLLGGTISFFQSLCVLGYCVLPLTVAMLV 165

Query:   220 CMLKDNXXXXXXXXXXTL-------AWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVG 272
             C L              L       AWS+ A+  F++ +  P RKAL +YP+FL Y  + 
Sbjct:   166 CRLVLLAGSGTVSFIIRLIVVIAMFAWSTLASTAFLADSQPPHRKALVVYPIFLFYFVIS 225

Query:   273 FLII 276
             ++I+
Sbjct:   226 WMIL 229

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
COG5080	227	COG5080, YIP1, Rab GTPase interacting factor, Golg	3e-20
pfam04893	171	pfam04893, Yip1, Yip1 domain	8e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.004

>gnl|CDD|227412 COG5080, YIP1, Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

 Score = 86.4 bits (214), Expect = 3e-20
 Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 23/215 (10%)

Query: 79  PLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPN------- 131
           P      SGGS         G  P  L E +  T  R +      L   +  N       
Sbjct: 17  PDAPFAASGGSADFEGDQNLGPDP-LLDETLLATSTRGVYPGDPPLLEELGINFGHIKSK 75

Query: 132 ------PYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI 185
                 P+       L D DLWGP  FI+   L LS +        F   + +   G + 
Sbjct: 76  SDDVLGPFDNKAFDILADCDLWGPLIFILLYSLFLSLAGKS----HFGYIYGISLFGTLS 131

Query: 186 LTLNVLLLGG-HIIFFQSLSLLGYCLFPLDIGALIC--MLKDNVLVKVIVVCVTLAWSSW 242
           L L + LLG  +I FF ++S+LGY L PL   +L+   + +  +L  V+V  + L WS++
Sbjct: 132 LHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVA-LFLIWSTY 190

Query: 243 AAYPFMSSAVN-PRRKALALYPVFLMYVSVGFLII 276
           AA   + S +    ++ L +YP+ L Y     +I 
Sbjct: 191 AASGVLKSKLQLSNKRLLVVYPLLLFYNVFAIIIK 225

Length = 227

>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 30/160 (18%)

Query: 142 RDWDLWGPFFFIVFLGLTL-------------SWSASVKKSEVFAVAFALLAAG------ 182
           R   L      ++ L L L                  +                      
Sbjct: 19  RAPWLPLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGLFL 78

Query: 183 -AVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVL--VKVIVVCVTLAW 239
            A++L L   L GG   F Q+LSL+GY L PL +G LI +L   +L  + ++V  + L W
Sbjct: 79  LALLLHLIAKLFGGDGSFKQTLSLVGYALLPLILGGLIALLLSLLLGALLLLVGLLALIW 138

Query: 240 SSWAAYPFMSSAVN-PRRKALALYPVFLMYVSVGFLIIAI 278
           S +  Y  + +A    ++KAL           +  L++ +
Sbjct: 139 SLYLLYLGLKAAHGLSKKKALL-------VALLLLLLLIV 171

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases. Length = 171

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%)

Query: 28   ASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISG 87
            +  +   P  P  PP     P ++ P   S   P PP +S Q     P P P P S   G
Sbjct: 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLG 2853

Query: 88   GS 89
            GS
Sbjct: 2854 GS 2855

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 16/108 (14%)

Query: 20  DEIENLINASPATVLPARPPSPPRPATIPVSSAPFI-QSNIPPPPPTSSNQKVPSVPVPP 78
               + I  + A   P   P+P  P      SAP   Q+   P PP +       VP  P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 79  PLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKL 126
             PS T    +           PP+   E +W        +I++ L+L
Sbjct: 422 TEPSPTPPANAANA--------PPSLNLEELWQ-------QILAKLEL 454

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 27   NASPATVLPARPPSP--PRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSST 84
             + P+   PA PP+      A +P +++P      P PPPTS+    P  P  PP PS  
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASP----AGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

Query: 85   ISGGSRP 91
            + G   P
Sbjct: 2852 LGGSVAP 2858

Length = 3151

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 2   SNPHSDTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPP 61
           S     ++PL  S+ +D          +PA  +   P +   PA     +          
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTP-----APAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV 209

Query: 62  PPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIAST 96
             P+ +N    + P P    +   +     + A  
Sbjct: 210 VAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244

Length = 331

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG2946	234	consensus Uncharacterized conserved protein [Funct	100.0
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	100.0
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	100.0
KOG3114	290	consensus Uncharacterized conserved protein [Funct	98.96
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	98.33
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	96.67
KOG3094	284	consensus Predicted membrane protein [Function unk	92.25
COG5197	284	Predicted membrane protein [Function unknown]	86.65

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.1e-58  Score=410.04  Aligned_cols=233  Identities=51%  Similarity=0.848  Sum_probs=204.5

Q ss_pred             cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhH
Q 023628           33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT  112 (279)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~e~~tLDEPllee  112 (279)
                      +.++||++++| .|+++++    +.+.+|-.+.    ....++.++|...++|+|.     ...++.+|+||||||+|||
T Consensus         1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s----~~~~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t   66 (234)
T KOG2946|consen    1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS----PSVEAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET   66 (234)
T ss_pred             CCCCCCCCCCC-CCcCccC----cccCCccccC----ccccCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence            35789999999 8899987    2233311111    1122355566667777774     4677889999999999999


Q ss_pred             hhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHHHHHHHHHHh
Q 023628          113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLL  192 (279)
Q Consensus       113 LgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gsi~l~LN~~l  192 (279)
                      ++||+++|+.|+|+|++|+|.++|+.+.+||||||||++||+.+|++|++++......+|+++|+++|+|+.++++|+|+
T Consensus        67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~i~wfG~~vvtln~kL  146 (234)
T KOG2946|consen   67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFAILWFGAVVVTLNIKL  146 (234)
T ss_pred             HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987655589999999999999999999999


Q ss_pred             cCcceeeeeeehhhccchHHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHHhHHHHHhhhccCCceEEeehhHHHHHHHH
Q 023628          193 LGGHIIFFQSLSLLGYCLFPLDIGA-LICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSV  271 (279)
Q Consensus       193 lgg~Isf~qsvSVLGYcLlPLVi~s-lI~~~~~~~~lr~il~~l~v~WSt~sAs~f~~~~v~~~rr~Lv~YPi~LfY~~f  271 (279)
                      +||+|+|+|++|++||||||+++.+ +++++....++|++++.++.+||+|+|..|++..+.++||.|++||+||||+.+
T Consensus       147 LGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~~~~~kk~LavYPvFL~y~~~  226 (234)
T KOG2946|consen  147 LGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSISQLPRKKLLAVYPVFLFYFSV  226 (234)
T ss_pred             hCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccceehhhHHHHHHhh
Confidence            9999999999999999999999997 667777788999999999999999999999999999999999999999999999


Q ss_pred             hhheeEcC
Q 023628          272 GFLIIAID  279 (279)
Q Consensus       272 a~LvIf~~  279 (279)
                      +||++..|
T Consensus       227 s~lii~~n  234 (234)
T KOG2946|consen  227 SWLIISHN  234 (234)
T ss_pred             heEEEecC
Confidence            99998765

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-50  Score=361.79  Aligned_cols=167  Identities=25%  Similarity=0.496  Sum_probs=157.5

Q ss_pred             CcchhhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHHHH
Q 023628          106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI  185 (279)
Q Consensus       106 DEPlleeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gsi~  185 (279)
                      |||+|||||||++||++|+|+||  ||+|..++++++|.||||||+||++|++.|+++||.|||||||+  +++.+.++|
T Consensus        81 EpPLLEELgInf~hI~~KT~~VL--nP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi--~~~gsl~iy  156 (249)
T KOG3103|consen   81 EPPLLEELGINFDHIKQKTRAVL--NPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGI--SLLGSLSIY  156 (249)
T ss_pred             CCchHHHhCCCHHHHHHHHhhee--cccccCceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeee--HHHHHHHHH
Confidence            56688999999999999999999  88998889999999999999999999999999999999999996  688999999


Q ss_pred             HHHHHHhcCcceeeeeeehhhccchHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhHHHHHhhhc-cCCceEEeehh
Q 023628          186 LTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKD-NVLVKVIVVCVTLAWSSWAAYPFMSSAV-NPRRKALALYP  263 (279)
Q Consensus       186 l~LN~~llgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~-~~~lr~il~~l~v~WSt~sAs~f~~~~v-~~~rr~Lv~YP  263 (279)
                      .++|+|. .++++|.+|+|||||||+|+|++|.+++++. ++.+|+++++++++||||+|+++|+... +++||.|++||
T Consensus       157 ~L~nlm~-~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al~~~~~rlLiaYp  235 (249)
T KOG3103|consen  157 FLLNLMS-NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSALSMENQRLLVAYP  235 (249)
T ss_pred             HHHHHHh-hcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhH
Confidence            9999876 6789999999999999999999999998876 5789999999999999999999999855 79999999999


Q ss_pred             HHHHHHHHhhheeE
Q 023628          264 VFLMYVSVGFLIIA  277 (279)
Q Consensus       264 i~LfY~~fa~LvIf  277 (279)
                      |+|+|.+|+|+++|
T Consensus       236 ~~l~Y~~Fall~if  249 (249)
T KOG3103|consen  236 CALLYGVFALIVIF  249 (249)
T ss_pred             HHHHHhhheeEEeC
Confidence            99999999999986

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-43  Score=315.70  Aligned_cols=169  Identities=28%  Similarity=0.540  Sum_probs=151.7

Q ss_pred             CCCcchhhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHH
Q 023628          104 TLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGA  183 (279)
Q Consensus       104 tLDEPlleeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gs  183 (279)
                      -.|||++|||++|+.+|++|++.|+.|  ++..+.++++||||||||+||+++++.|++++|.||||||+    +.|.|.
T Consensus        56 p~d~pLleel~i~F~~i~~ks~~vl~p--~~~~~~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~----islfg~  129 (227)
T COG5080          56 PGDPPLLEELGINFGHIKSKSDDVLGP--FDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYG----ISLFGT  129 (227)
T ss_pred             CCCccHHHHhcccccccccccceeeec--ccccchhhhhcccccccHHHHHHHHHHHHhcccceeehhhH----HHHHHH
Confidence            348999999999999999999999955  55555689999999999999999999999999999998885    678999


Q ss_pred             HHHHHHHHhcC-cceeeeeeehhhccchHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhHHHHHhhhc-cCCceEEe
Q 023628          184 VILTLNVLLLG-GHIIFFQSLSLLGYCLFPLDIGALICMLKDN-VLVKVIVVCVTLAWSSWAAYPFMSSAV-NPRRKALA  260 (279)
Q Consensus       184 i~l~LN~~llg-g~Isf~qsvSVLGYcLlPLVi~slI~~~~~~-~~lr~il~~l~v~WSt~sAs~f~~~~v-~~~rr~Lv  260 (279)
                      +.+.++++++| ++|+|+|++||+|||+||+|+.|+++.+... ...+.+++.+|.+||+|+|+.++++.. .+++|.|+
T Consensus       130 lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~l~n~~llv  209 (227)
T COG5080         130 LSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQLSNKRLLV  209 (227)
T ss_pred             HHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999998 8999999999999999999999999988753 345566666699999999999999654 78999999


Q ss_pred             ehhHHHHHHHHhhheeEc
Q 023628          261 LYPVFLMYVSVGFLIIAI  278 (279)
Q Consensus       261 ~YPi~LfY~~fa~LvIf~  278 (279)
                      +||++|||.+|+|+++|+
T Consensus       210 ~Ypl~LFY~~fa~ii~f~  227 (227)
T COG5080         210 VYPLLLFYNVFAIIIKFN  227 (227)
T ss_pred             HHHHHHHHhhheEEEEeC
Confidence            999999999999999885

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=3.9e-09  Score=99.24  Aligned_cols=129  Identities=21%  Similarity=0.319  Sum_probs=82.8

Q ss_pred             hhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccC--------CCcceEEehhHHHHH-
Q 023628          110 WDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS--------VKKSEVFAVAFALLA-  180 (279)
Q Consensus       110 leeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk--------~~fg~IFg~vF~i~~-  180 (279)
                      ..-+++|..|+++|++.+++|+.+  ...+.-.++|||||+++|.++.+++..+|.        ...|+-++..|..+. 
T Consensus        81 q~fFdVDt~qV~~Rl~~SliP~~~--~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~s  158 (290)
T KOG3114|consen   81 QPFFDVDTAQVRKRLKESLIPRNY--VRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTS  158 (290)
T ss_pred             ccccCCCHHHHHHHHHHhcCCccc--cccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHH
Confidence            345789999999999999999322  122233469999999999999999988773        112333333333222 


Q ss_pred             -HHHHHHHHHH---------Hh-----cCcceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 023628          181 -AGAVILTLNV---------LL-----LGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSS  241 (279)
Q Consensus       181 -~gsi~l~LN~---------~l-----lgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt  241 (279)
                       ...+|.+++.         +.     ++...+++..+|+.||+++......+++. .+-.+++++++..+..=|.
T Consensus       159 aa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~i-v~~~~~~wvl~~~~~~~S~  233 (290)
T KOG3114|consen  159 AATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWI-VPSSMVQWVLVGTALGLSG  233 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhH
Confidence             2222222111         11     23457788899999999999998444443 4445778877776655443

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=98.33  E-value=7.3e-07  Score=74.02  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             hccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccC-------------CCcc----eEEehhH
Q 023628          114 KRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS-------------VKKS----EVFAVAF  176 (279)
Q Consensus       114 giD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk-------------~~fg----~IFg~vF  176 (279)
                      .+|+++..+|++.--          +..+++|++++++.++.+...+..+++             .+++    .+++..+
T Consensus         2 l~~P~~~f~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (172)
T PF04893_consen    2 LFSPREFFRRLRESP----------RISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFI   71 (172)
T ss_pred             ccCHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence            367778888776521          134679999999999988887776631             1111    1111111


Q ss_pred             ---HHHHHHHHHHHHHHHhcCcceeeeeeehhhccchHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHhHHHHHhhh
Q 023628          177 ---ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDN--VLVKVIVVCVTLAWSSWAAYPFMSSA  251 (279)
Q Consensus       177 ---~i~~~gsi~l~LN~~llgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~~--~~lr~il~~l~v~WSt~sAs~f~~~~  251 (279)
                         ..+.+++..+.+-.+..||+-++.|+.|+.|||++|.++..++..+...  ..+...+..++.+|+.+.....+...
T Consensus        72 ~~~i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~  151 (172)
T PF04893_consen   72 IILIGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREV  151 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2223334445556667899999999999999999999999999876532  22455667888899999988877766


Q ss_pred             cc
Q 023628          252 VN  253 (279)
Q Consensus       252 v~  253 (279)
                      .+
T Consensus       152 ~~  153 (172)
T PF04893_consen  152 HR  153 (172)
T ss_pred             hC
Confidence            53

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=96.67  E-value=0.0062  Score=56.47  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             hhhHhhccHHHHHhhcceeeeeCCCCC-----------CCCCcccCCCchhhHHHHHHHHHHHHhcc--CCCc-----ce
Q 023628          109 VWDTVKRDLSRIVSNLKLVVFPNPYRE-----------DPGKALRDWDLWGPFFFIVFLGLTLSWSA--SVKK-----SE  170 (279)
Q Consensus       109 lleeLgiD~~~I~~Kl~~VL~Pnp~r~-----------~~~~~l~DwDLwGPLlf~L~la~~Lllsg--k~~f-----g~  170 (279)
                      +.--+.+|-.=|.+|++.+++|-..|.           .+++.+.-+||.=|++-+++|.++-.+..  +.+|     |.
T Consensus        39 lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~  118 (240)
T PF03878_consen   39 LKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGI  118 (240)
T ss_pred             ceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            566678999999999999998832221           01234556999999999988877544321  2234     23


Q ss_pred             EEehhHHHHHHHHH-HHHHHHHhcCc--ceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhHHHH
Q 023628          171 VFAVAFALLAAGAV-ILTLNVLLLGG--HIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPF  247 (279)
Q Consensus       171 IFg~vF~i~~~gsi-~l~LN~~llgg--~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt~sAs~f  247 (279)
                      ..+..+ ++|..-+ ++.+...+++.  ++++...+|..||-..++++..++..+... +.    .-++.+|.+.+..-|
T Consensus       119 ~~s~al-~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~-~~----yy~~~ly~~~a~~~F  192 (240)
T PF03878_consen  119 QASSAL-VWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASLLFGS-WV----YYIALLYTSFANAFF  192 (240)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHHHccc-HH----HHHHHHHHHHHHHHH
Confidence            333222 1222222 33444444554  788888999999999999888877766432 22    223556776666555


Q ss_pred             Hhh
Q 023628          248 MSS  250 (279)
Q Consensus       248 ~~~  250 (279)
                      +.+
T Consensus       193 l~R  195 (240)
T PF03878_consen  193 LLR  195 (240)
T ss_pred             HHH
Confidence            543

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=92.25  E-value=0.85  Score=43.20  Aligned_cols=137  Identities=20%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             hhhHhhccHHHHHhhcceeeeeCCCC----CC-------CCCcccCCCchhhHHHHHHHHHHHHh--ccCCCcc-eEEeh
Q 023628          109 VWDTVKRDLSRIVSNLKLVVFPNPYR----ED-------PGKALRDWDLWGPFFFIVFLGLTLSW--SASVKKS-EVFAV  174 (279)
Q Consensus       109 lleeLgiD~~~I~~Kl~~VL~Pnp~r----~~-------~~~~l~DwDLwGPLlf~L~la~~Lll--sgk~~fg-~IFg~  174 (279)
                      +.--+.+|-.=|++|++.+++|-..|    ..       .++.++-+||.=|++=.+++.++..+  +-+.+|+ ..+++
T Consensus        86 l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~  165 (284)
T KOG3094|consen   86 LKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGI  165 (284)
T ss_pred             ceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence            44557788999999999999883211    11       12356679999999988877765333  2233343 34444


Q ss_pred             hHH---HHHHHHHHH-HHHHHhcC--cceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhHHHHH
Q 023628          175 AFA---LLAAGAVIL-TLNVLLLG--GHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFM  248 (279)
Q Consensus       175 vF~---i~~~gsi~l-~LN~~llg--g~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt~sAs~f~  248 (279)
                      .++   ++|+..+.+ .+-+.+++  +..+....+|--||-..+++++.+..++...  .   .-.+...|-+.+-.-|+
T Consensus       166 ~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~--~---~yyi~~~yt~~a~gvFL  240 (284)
T KOG3094|consen  166 LASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGP--Y---GYYIALAYTYLAFGVFL  240 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecc--h---hHHHHHHHHHHHHHHHH
Confidence            332   233333332 22222333  4677888889999999999988887765321  1   12334466665555555


Q ss_pred             hh
Q 023628          249 SS  250 (279)
Q Consensus       249 ~~  250 (279)
                      .+
T Consensus       241 lR  242 (284)
T KOG3094|consen  241 LR  242 (284)
T ss_pred             HH
Confidence            54

>COG5197 Predicted membrane protein [Function unknown]

Probab=86.65  E-value=7.4  Score=36.45  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCcchhhHhhccHHHHHhhcceeeeeCCCC----CCC-------CCcccCCCchhhHHHHHHHHHHHHhcc-
Q 023628           97 GFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYR----EDP-------GKALRDWDLWGPFFFIVFLGLTLSWSA-  164 (279)
Q Consensus        97 gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~VL~Pnp~r----~~~-------~~~l~DwDLwGPLlf~L~la~~Lllsg-  164 (279)
                      ++++.-+  ..++..-+.+|-+-+.+|++.+++|-..|    ..+       .+.+..+|++=|++=.+++-++.-.-. 
T Consensus        73 ~~g~~~s--~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~G  150 (284)
T COG5197          73 ATGNAAS--SQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQG  150 (284)
T ss_pred             hhccccc--ccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhh
Confidence            3444434  35677778899999999999999884322    111       234677999999998887766543321 


Q ss_pred             -CCC-----cceEEehhHHHHHHHHHHHHHHHHh----c--CcceeeeeeehhhccchHHHHHHHHHHHH
Q 023628          165 -SVK-----KSEVFAVAFALLAAGAVILTLNVLL----L--GGHIIFFQSLSLLGYCLFPLDIGALICML  222 (279)
Q Consensus       165 -k~~-----fg~IFg~vF~i~~~gsi~l~LN~~l----l--gg~Isf~qsvSVLGYcLlPLVi~slI~~~  222 (279)
                       |..     +|+.++-.++++    .+-++-.++    +  +..-+|...+|--||=..|++++.+...+
T Consensus       151 L~g~F~PE~lg~~~s~~~a~v----~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~  216 (284)
T COG5197         151 LKGSFNPEDLGYKLSSTLAFV----CVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNV  216 (284)
T ss_pred             cccCCCHHHhhHHHHHHHHHH----HHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhc
Confidence             223     445444322221    111222232    1  12224667789999999999998887744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
3a58_A	320	Exocyst complex component SEC3; protein complex, P	9e-04

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 39.1 bits (90), Expect = 9e-04
 Identities = 10/87 (11%), Positives = 26/87 (29%)

Query: 18  DIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVP 77
           D+        +    V+  RP S     +   +       ++   P ++  ++       
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291

Query: 78  PPLPSSTISGGSRPNIASTGFGSPPNT 104
              P ST +         +   +P ++
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNKAPYSS 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00