Citrus Sinensis ID: 023635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHcccEEEccccccccccccc
Coil and Loop (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAasvepaprptkqpvsldkmfwskpASLAlaldsplrvdepkyeGIKRFILKLMLFYSKqsksirganVIYKRVVsqvdkpaiydVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVafdaallpeakqDELQNVIWRNifsddgsskpddAAVRAVQAMTRYVRREVSclsltdkeamfsgnfmftplentsfgpvrr
Flexible Loop (DISEMBL)
MLPRWCRAVRslnsitqrndFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDKMFWSKPASLalaldsplrvdepKYEGIKRFILKLMLFYSKQsksirganviykrvvsqvdkPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNifsddgsskpdDAAVRAVQAMTRYVRREVSCLSLTDKeamfsgnfmftplentsfgpvrr
Low Complexity Region (SEG)
MLPRWCRAVRSLNSITQRNDFHAISRQSYamataaaasvepaprpTKQPVSLDKMFWSKpaslalaldsplRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRlkeegkegvelgQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Disordered region (IsUnstruct)
****WCRAVRSLNSITQRNDFHAI******************************MFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS**********AVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTP***********
Disordered Region (DISOPRED)
**P******************************************************************************KRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKA******SKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLE*********
Disordered Region (DISEMBL)
MLPRWCRAVRSLNSITQRNDFHAISRQSY*******************PVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Disordered Region (DISPRO)
*LP*WCRAVRSLN********************************************SKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLE*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9W6I0	200	Ubiquinol-cytochrome c re	N/A	no	0.562	0.785	0.275	9e-13
Q9NVA1	299	Ubiquinol-cytochrome c re	yes	no	0.695	0.648	0.277	2e-11
Q9CWU6	295	Ubiquinol-cytochrome c re	yes	no	0.612	0.579	0.285	3e-11
P21560	335	Protein CBP3, mitochondri	yes	no	0.512	0.426	0.269	7e-06
Q9USK6	283	CBP3-like protein OS=Schi	yes	no	0.465	0.459	0.270	0.0001

>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Xenopus laevis GN=uqcc PE=2 SV=1

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 105 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 164
           +Y   V ++D    ++  +L  T    F +  LH+W CL R+K+EG+ G  + +Y+    
Sbjct: 21  MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80

Query: 165 NHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSD 223
             DVE R    G++ + L   M+ + +IFY  I  +D  ++ + +   L   +WRN+   
Sbjct: 81  WEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIFGYDEGIISDDRI--LAAALWRNLL-- 136

Query: 224 DGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKE-AMFSGNFMFTPL 269
             + + DD   R ++ +  YVR++V  L   D E  + +G  ++ PL
Sbjct: 137 --NKQCDDP--RKLELLVEYVRKQVQFLDTLDGEDLLLTGEVVWRPL 179

Xenopus laevis (taxid: 8355)

>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Homo sapiens GN=UQCC PE=1 SV=3

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 63  LALALDSPLRVDEPKYEGIKRF--ILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDK 115
           L+   DSP    +P  E +  F  I++ M F     YSK    I  A  +Y   V + D 
Sbjct: 76  LSTTKDSP----QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDF 130

Query: 116 PAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKA 175
              +    +  TF   F + +LH+W CL R+K+EG+ G  + + +      DV+ R    
Sbjct: 131 EEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVM 190

Query: 176 GVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
           GVN  +L K M  +   FY  I+ +D  +L  +    L   +WR  F    + K +D   
Sbjct: 191 GVNPYILKKNMILMTNHFYAAILGYDEGIL--SDDHGLAAALWRTFF----NRKCEDP-- 242

Query: 235 RAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFTPL 269
           R ++ +  YVR+++  L S+  ++ + +G   + PL
Sbjct: 243 RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPL 278

Homo sapiens (taxid: 9606)

>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog OS=Mus musculus GN=Uqcc PE=2 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)

Query: 90  LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 149
           L YSK    I  A  +Y   V + D    +    +  TF   F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query: 150 GKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
           G+ G  + + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218

Query: 209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
              L   +WR  F    + K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct: 219 DHGLAAALWRTFF----NQKCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 272

Query: 268 PL 269
           PL
Sbjct: 273 PL 274

Mus musculus (taxid: 10090)

>sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBP3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%)

Query: 118 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKE-EGKEGVELGQYLYEIYNHDVEMRV---S 173
            Y+   L +TF   F + VLH W    R++    K G    Q L +    D+E+R+    
Sbjct: 143 FYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEM 202

Query: 174 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 233
           K     +  +++K+      G I A+D     +     L   +WRN+F   G  K  D  
Sbjct: 203 KVNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV 257

Query: 234 VRAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 268
              ++++ RY+  ++  LS L+D+E   +G F F P
Sbjct: 258 --HLESVVRYIYSQLYVLSRLSDRE-FATGKFKFVP 290

Chaperone required for the assembly of ubiquinol-cytochrome c reductase of the mitochondrial respiratory chain.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USK6|CBP3_SCHPO CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbp3 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 119 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSK--- 174
           Y    +  TF+  F +  LH+W    R++   K E V   Q L   +  D+E+R+ K   
Sbjct: 127 YQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHKDYR 186

Query: 175 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
              N +   ++K+L +   G I  +D  +L       L   +WRN+F      +PD   V
Sbjct: 187 INSNRISGMYLKDLFQQQTGAIFGYDQGML--GSDAVLATSVWRNLF----VGRPDVDLV 240

Query: 235 RAVQAMTRYVRREV---SCLSLTD 255
             ++ + +++R  V   SCLS  D
Sbjct: 241 -ILETIVKFIRLNVYRLSCLSTDD 263

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
118489171	291	unknown [Populus trichocarpa x Populus d	0.978	0.938	0.706	1e-109
30696021	281	ubiquinol-cytochrome C chaperone family	0.964	0.957	0.675	1e-108
110737777	281	hypothetical protein [Arabidopsis thalia	0.964	0.957	0.671	1e-107
359490078	285	PREDICTED: ubiquinol-cytochrome c reduct	0.996	0.975	0.693	1e-107
297795925	281	ubiquinol-cytochrome C chaperone family	0.971	0.964	0.690	1e-107
297745034	354	unnamed protein product [Vitis vinifera]	0.996	0.785	0.693	1e-106
224112809	224	predicted protein [Populus trichocarpa]	0.784	0.977	0.817	1e-106
449461829	290	PREDICTED: ubiquinol-cytochrome c reduct	0.971	0.934	0.697	1e-105
357445931	277	Ubiquinol-cytochrome c reductase complex	0.953	0.960	0.680	1e-102
255539881	261	conserved hypothetical protein [Ricinus	0.878	0.938	0.687	4e-97

>gi|118489171|gb|ABK96392.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/286 (70%), Positives = 230/286 (80%), Gaps = 13/286 (4%)

Query: 1   MLPRWCRAVRSLNSITQRND-------FHAISRQSYAMATAAAASVEPAPR------PTK 47
           ML R  RA  S      RN+       F  IS QSYA A  AAA             P+ 
Sbjct: 1   MLARCSRAAASHFFHQLRNNNNSKDAAFKFISHQSYAKAATAAAMAASPILSSQKVFPSN 60

Query: 48  QPVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYK 107
             V+LDKMF SKP SLALA DSPLR++EP+YEGI+RF+LKL+LFYSKQSKSIRGANV+Y+
Sbjct: 61  SVVNLDKMFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVYR 120

Query: 108 RVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD 167
           R+VSQVD+PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EG+EGVE GQY+YEIYNHD
Sbjct: 121 RIVSQVDRPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGREGVEFGQYIYEIYNHD 180

Query: 168 VEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSS 227
           VE+RVSKAGVNLLL+KWMKELEKI YGNIVA+DAA+LPEAK DEL  VIWRN+FSDDG++
Sbjct: 181 VELRVSKAGVNLLLTKWMKELEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGTT 240

Query: 228 KPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTS 273
           +PDD A +A+QAM RYVR E SCLSLTDKEAMFSGNFMFT LEN S
Sbjct: 241 EPDDTASQAIQAMARYVRHEASCLSLTDKEAMFSGNFMFTSLENLS 286

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696021|ref|NP_199935.2| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana] gi|63025180|gb|AAY27063.1| At5g51220 [Arabidopsis thaliana] gi|87116650|gb|ABD19689.1| At5g51220 [Arabidopsis thaliana] gi|332008671|gb|AED96054.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis thaliana]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/280 (67%), Positives = 228/280 (81%), Gaps = 11/280 (3%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVS 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P++
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPIN 58

Query: 52  LDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVS 111
           LDKMFWSKP SLAL  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++
Sbjct: 59  LDKMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIA 118

Query: 112 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMR 171
           QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+R
Sbjct: 119 QVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELR 178

Query: 172 VSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDD 231
           VSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+
Sbjct: 179 VSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDN 238

Query: 232 AAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
             ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct: 239 TDLKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737777|dbj|BAF00827.1| hypothetical protein [Arabidopsis thaliana]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/280 (67%), Positives = 227/280 (81%), Gaps = 11/280 (3%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR---PTKQPVS 51
           MLPR  R V      RSL +     +    SR  Y  AT A A+ +P  +   P+K P++
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSR--YGYATVAPAAADPPSQKDFPSKSPIN 58

Query: 52  LDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVS 111
           LDKMFWSKP SL L  DSPLR+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++
Sbjct: 59  LDKMFWSKPCSLVLPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIA 118

Query: 112 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMR 171
           QVDKPAIYDVFNLEKTF++T+SLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+R
Sbjct: 119 QVDKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELR 178

Query: 172 VSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDD 231
           VSKAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+
Sbjct: 179 VSKAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDN 238

Query: 232 AAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
             ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct: 239 TDLKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490078|ref|XP_002264821.2| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/284 (69%), Positives = 227/284 (79%), Gaps = 6/284 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDK 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAA          K  V  +K
Sbjct: 1   MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYAKVAAAADDSTEKNFSRKPEVYFNK 60

Query: 55  MFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 114
           MFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQVD
Sbjct: 61  MFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQVD 120

Query: 115 KPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSK 174
           KPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVSK
Sbjct: 121 KPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVSK 180

Query: 175 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
           AGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA 
Sbjct: 181 AGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAAA 240

Query: 235 RAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVR 278
            AVQAM RY RRE SCLSLTDKE++FSGNF F+ LEN     VR
Sbjct: 241 GAVQAMARYARRECSCLSLTDKESIFSGNFTFSSLENPKSDSVR 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795925|ref|XP_002865847.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297311682|gb|EFH42106.1| ubiquinol-cytochrome C chaperone family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/278 (69%), Positives = 225/278 (80%), Gaps = 7/278 (2%)

Query: 1   MLPRWCRAV------RSLNSITQRNDFHAISRQSYAMATAAAASVEPAPR-PTKQPVSLD 53
           MLPR  R V      RSL +     +    SR  YA    AAA   P    P+K P++LD
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPPKKDFPSKSPINLD 60

Query: 54  KMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 113
           KMFWSKP SLAL  DSPLR+DEP Y GI+RFILKLM+FYSKQS SIRGANVIYKR+++QV
Sbjct: 61  KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKLMMFYSKQSMSIRGANVIYKRIIAQV 120

Query: 114 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVS 173
           DKPAIYDVFNLEKTF++TFSLLVLHMW  LRRLKE+G+EGV+LGQY+YEIYNHDVE+RVS
Sbjct: 121 DKPAIYDVFNLEKTFKITFSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query: 174 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 233
           KAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK +ELQ  +WRN+FSDDG++ PD+  
Sbjct: 181 KAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNELQIKLWRNVFSDDGTTTPDNTD 240

Query: 234 VRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
           ++A QAM RYVRRE+  LSLTD E++FSGNF FTPLEN
Sbjct: 241 LKAAQAMARYVRRELGSLSLTDNESIFSGNFSFTPLEN 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745034|emb|CBI38626.3| unnamed protein product [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/284 (69%), Positives = 227/284 (79%), Gaps = 6/284 (2%)

Query: 1   MLPRWCRA------VRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDK 54
           MLPRW RA      + S N++  R DF  ++ +SYA   AAA          K  V  +K
Sbjct: 70  MLPRWSRAAIRLYKLGSQNNMELRKDFCFVASRSYAKVAAAADDSTEKNFSRKPEVYFNK 129

Query: 55  MFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 114
           MFWSKP SLALA DSPLRV+EPKYEGI+  I K++LFYSKQSKSIRGANV+Y+R+ SQVD
Sbjct: 130 MFWSKPCSLALAQDSPLRVEEPKYEGIRHIIFKMLLFYSKQSKSIRGANVVYRRIASQVD 189

Query: 115 KPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSK 174
           KPAIY+ FNLEKTF+ TFSLL+LHMW CLRRLKE+GKEGVE GQYLYEIYNHDVE+RVSK
Sbjct: 190 KPAIYNAFNLEKTFKTTFSLLILHMWLCLRRLKEDGKEGVEFGQYLYEIYNHDVELRVSK 249

Query: 175 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
           AGVNLLL++WMK+LEKIFYGNIVA+DAA+LPEA+ DEL NVIW+NIFSDDG SKP+DAA 
Sbjct: 250 AGVNLLLTRWMKDLEKIFYGNIVAYDAAMLPEARPDELPNVIWKNIFSDDGLSKPNDAAA 309

Query: 235 RAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTSFGPVR 278
            AVQAM RY RRE SCLSLTDKE++FSGNF F+ LEN     VR
Sbjct: 310 GAVQAMARYARRECSCLSLTDKESIFSGNFTFSSLENPKSDSVR 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112809|ref|XP_002332696.1| predicted protein [Populus trichocarpa] gi|222832950|gb|EEE71427.1| predicted protein [Populus trichocarpa]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/219 (81%), Positives = 203/219 (92%)

Query: 55  MFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 114
           MF SKP SLALA DSPLR++EP+YEGI+RF+LKL+LFYSKQSKSIRGANV+Y+R+VSQVD
Sbjct: 1   MFRSKPCSLALAPDSPLRIEEPEYEGIRRFVLKLLLFYSKQSKSIRGANVVYRRIVSQVD 60

Query: 115 KPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSK 174
           +PAIY+VFNLEKTF+MTFSLLVLHMW CLRRLK+EGKEGVE GQY+YEIYNHDVE+RVSK
Sbjct: 61  RPAIYEVFNLEKTFKMTFSLLVLHMWLCLRRLKQEGKEGVEFGQYIYEIYNHDVELRVSK 120

Query: 175 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
           AGVNLLL+KWMKELEKI YGNIVA+DAA+LPEAK DEL  VIWRN+FSDDG+++PDD A 
Sbjct: 121 AGVNLLLTKWMKELEKILYGNIVAYDAAMLPEAKPDELPKVIWRNVFSDDGTTEPDDTAS 180

Query: 235 RAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLENTS 273
           +A+QAM RYVR E SCLSLTDKEAMFSGNFMFT LEN S
Sbjct: 181 QAIQAMARYVRHEASCLSLTDKEAMFSGNFMFTSLENLS 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461829|ref|XP_004148644.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus] gi|449516820|ref|XP_004165444.1| PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Cucumis sativus]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/281 (69%), Positives = 227/281 (80%), Gaps = 10/281 (3%)

Query: 1   MLPRWCRAVRSLNSITQRNDF------HAISRQSYA-MATAAAASVEPAPRPTK--QPVS 51
           ML +W R  R L+ I   ++F      H    +SYA +A AAA ++  + +       V 
Sbjct: 1   MLAKWSRVTRHLSRIGLESNFKFSTDLHVCPHRSYAKVAAAAAPNIGHSEKGVSGGHVVH 60

Query: 52  LDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVS 111
           LDKMF SKP SLAL  DSPLR+DEP+YEGIKR  L++MLFYSKQSK IR ANVIY+RVVS
Sbjct: 61  LDKMFLSKPCSLALPKDSPLRMDEPQYEGIKRLFLRMMLFYSKQSKHIRAANVIYQRVVS 120

Query: 112 QVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMR 171
           QVDKPAIYDVFNLEKTF+ TFSLLVLHMW CLRRLKEEGKEGVE GQY+YE+YNHDVE+R
Sbjct: 121 QVDKPAIYDVFNLEKTFKTTFSLLVLHMWLCLRRLKEEGKEGVERGQYVYELYNHDVELR 180

Query: 172 VSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDD 231
           VSKAGVNLLL +WMK+LEKIFYGNIVA+D+A+LPEA +DEL NVIW+NI+SDDGSS P+ 
Sbjct: 181 VSKAGVNLLLIRWMKDLEKIFYGNIVAYDSAILPEAGKDELPNVIWKNIYSDDGSSMPNG 240

Query: 232 A-AVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
           A A+RAVQAM RY RREVSCLSLTDK+A+FSGNFMFT LE 
Sbjct: 241 APALRAVQAMARYTRREVSCLSLTDKDAIFSGNFMFTSLET 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445931|ref|XP_003593243.1| Ubiquinol-cytochrome c reductase complex chaperone CBP3-like protein [Medicago truncatula] gi|355482291|gb|AES63494.1| Ubiquinol-cytochrome c reductase complex chaperone CBP3-like protein [Medicago truncatula] gi|388491454|gb|AFK33793.1| unknown [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/272 (68%), Positives = 217/272 (79%), Gaps = 6/272 (2%)

Query: 1   MLPRWCRAVRSLNSITQRNDFH-AISRQSYAMATAAAASVEPAPRPTKQPVSLDKMFWSK 59
           M   W +A+  L+    R   H   +R + A        ++    PT   V+LDKMFWSK
Sbjct: 1   MFRTWSKAIIPLSKF--RTPMHQTYARVAAAPPPPPPPIIDQKFEPT---VNLDKMFWSK 55

Query: 60  PASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIY 119
           P SLAL LDSPLRV+EP Y+G KRFI KLMLFYSKQSKSIRGANV+Y+R+VSQVDKP IY
Sbjct: 56  PCSLALPLDSPLRVNEPDYQGFKRFIFKLMLFYSKQSKSIRGANVVYRRIVSQVDKPLIY 115

Query: 120 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNL 179
           +VFNLEKTF+ TFSLLVLHMWF LRR+K+EG +GVE GQYLYEIYNHDVE+RVSKAGVNL
Sbjct: 116 EVFNLEKTFKTTFSLLVLHMWFYLRRVKQEGNDGVEFGQYLYEIYNHDVELRVSKAGVNL 175

Query: 180 LLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQA 239
           LL KWMKELEKIFYGNIVA+DAA+LPEAK  +   VIWRNIFSDDGSS PD+AA ++VQA
Sbjct: 176 LLIKWMKELEKIFYGNIVAYDAAILPEAKPSDFATVIWRNIFSDDGSSTPDEAAWQSVQA 235

Query: 240 MTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
           + RY RREV+C++LTDKEA+ SGNFMFT L++
Sbjct: 236 LARYARREVNCMTLTDKEALLSGNFMFTSLKD 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539881|ref|XP_002511005.1| conserved hypothetical protein [Ricinus communis] gi|223550120|gb|EEF51607.1| conserved hypothetical protein [Ricinus communis]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 209/262 (79%), Gaps = 17/262 (6%)

Query: 1   MLPRWCRA-------VRSLNSITQ-RNDFHAISRQSYAMATAAAASVEPAPR-------P 45
           ML RW RA       +RSL + T+ R D   I R +YA A+AA   V PAP        P
Sbjct: 1   MLSRWSRAAASQVSNLRSLTNATKLRKDHLFIPRLTYAKASAAV--VSPAPNDSTHNTFP 58

Query: 46  TKQPVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVI 105
           +  PV LDKMFWSKP SLALALDSP+RV EP+++GI+RF+LKLMLFYSKQSKSIR ANV+
Sbjct: 59  SNSPVKLDKMFWSKPCSLALALDSPIRVYEPEFQGIRRFMLKLMLFYSKQSKSIRRANVV 118

Query: 106 YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYN 165
           Y+R++S+V+KP IY+VFNLEKTF+MTFSLLVLHMW  LRRLK+EG+EGVE GQYLYEIYN
Sbjct: 119 YRRIISRVNKPTIYEVFNLEKTFKMTFSLLVLHMWLVLRRLKQEGQEGVEFGQYLYEIYN 178

Query: 166 HDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDG 225
           HDVE+RVSKAGVNLLL+KWMKELEKIFYGNIVA+DAALLPEAK DEL  VIWRN+FSDDG
Sbjct: 179 HDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDAALLPEAKSDELVKVIWRNVFSDDG 238

Query: 226 SSKPDDAAVRAVQAMTRYVRRE 247
           SS+PD  A+ AVQA +    R 
Sbjct: 239 SSEPDATALHAVQACSHLCFRH 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2176227	281	AT5G51220 "AT5G51220" [Arabido	0.971	0.964	0.593	3.9e-83
UNIPROTKB|B7Z314	200	UQCC "Ubiquinol-cytochrome c r	0.612	0.855	0.252	1.6e-08
UNIPROTKB|F6RX10	296	UQCC "Uncharacterized protein"	0.612	0.577	0.258	1.7e-08
MGI|MGI:1929472	295	Uqcc "ubiquinol-cytochrome c r	0.612	0.579	0.258	3.9e-08
RGD|1585681	299	Uqcc "ubiquinol-cytochrome c r	0.612	0.571	0.252	5.4e-08
UNIPROTKB|F1NGP5	294	UQCC "Uncharacterized protein"	0.612	0.581	0.230	9.2e-08
ZFIN|ZDB-GENE-060929-1034	286	uqcc "ubiquinol-cytochrome c r	0.612	0.597	0.252	1.5e-07
UNIPROTKB|Q9NVA1	299	UQCC "Ubiquinol-cytochrome c r	0.612	0.571	0.252	1.7e-07
CGD|CAL0006092	326	orf19.5515 [Candida albicans (	0.505	0.432	0.256	2.6e-06
SGD|S000006136	335	CBP3 "Mitochondrial protein re	0.508	0.423	0.258	2.5e-05

TAIR|locus:2176227 AT5G51220 "AT5G51220" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 165/278 (59%), Positives = 198/278 (71%)

Query:     1 MLPRWCRAV------RSLNSITQRNDFHAISRQSYXXXXXXXXXXXXXXXX-TKQPVSLD 53
             MLPR  R V      RSL +     +    SR  Y                 +K P++LD
Sbjct:     1 MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query:    54 KMFWSKXXXXXXXXXXXXRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQV 113
             KMFWSK            R+DEP Y GI+RFILK+M+FYSKQS SIRGANVIYKR+++QV
Sbjct:    61 KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query:   114 DKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXXXXXXXXXXQYLYEIYNHDVEMRVS 173
             DKPAIYDVFNLEKTF++T+SLLVLHMW  LRR            QY+YEIYNHDVE+RVS
Sbjct:   121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query:   174 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 233
             KAGVNLLL+KWMKELE+IFYGN+VA+DAALLPEAK ++LQ  +WRN+FSDDG++ PD+  
Sbjct:   181 KAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDNTD 240

Query:   234 VRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMFTPLEN 271
             ++  QAM RYVRRE+  LSLTDKE++FSGNF FTPLEN
Sbjct:   241 LKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLEN 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B7Z314 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:     7 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 65

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:    66 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 123

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   124 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWR 177

Query:   268 PL 269
             PL
Sbjct:   178 PL 179

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F6RX10 UQCC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 47/182 (25%), Positives = 79/182 (43%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   103 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 161

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L + +
Sbjct:   162 GRSGKYMCRIIVHFMWEDVEQRGRIMGVNPYILKKNMMLMTNNFYAAILGYDEGILSDDR 221

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WR  F+     K +D   R ++ +  YVR+++  L S++ ++ + +G   + 
Sbjct:   222 G--LAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQIQYLDSMSGEDLLLTGEVSWR 273

Query:   268 PL 269
             PL
Sbjct:   274 PL 275

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1929472 Uqcc "ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 47/182 (25%), Positives = 77/182 (42%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   102 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     + +      DVE R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   219 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 272

Query:   268 PL 269
             PL
Sbjct:   273 PL 274

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

RGD|1585681 Uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     + +      DVE R    GVN  +L K M  +   FY  ++ +D  +L +  
Sbjct:   165 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAVLGYDEGILSD-- 222

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   223 DHGLAAALWRTFFNQ----KCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 276

Query:   268 PL 269
             PL
Sbjct:   277 PL 278

GO:0005739 "mitochondrion" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

UNIPROTKB|F1NGP5 UQCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 42/182 (23%), Positives = 81/182 (44%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YS+    +    + Y   V + D    ++   +  T    F +  LH+W CL R    
Sbjct:   101 LKYSRWKIKVAALRM-YTCCVEKTDYEEFFNRCQMPDTLNSWFLVAQLHVWMCLVRMKQE 159

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     +Y+      DVE R    G+N ++L + ++ + + FY  +  +D  +L +  
Sbjct:   160 GRAGKYMCRYIVHCMWEDVEQRGKVMGINSVVLKQDLRSMVENFYAALFGYDEGILSD-- 217

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WRN+F+ +    P     R ++ +  YVR++V  L +L+ ++ + +G   + 
Sbjct:   218 DHVLAAALWRNLFNRN-CEDP-----RHLELLVEYVRKQVQHLDALSGEDLLLTGEVSWR 271

Query:   268 PL 269
             PL
Sbjct:   272 PL 273

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

ZFIN|ZDB-GENE-060929-1034 uqcc "ubiquinol-cytochrome c reductase complex chaperone" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 46/182 (25%), Positives = 78/182 (42%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L Y+K    I    + Y   V +++    ++  +L  T    F +  LH+W CL R    
Sbjct:    93 LKYNKWKIKIAALRM-YTCCVERINYDEFFEKCSLPDTLNSWFLVAQLHVWMCLVRMRQE 151

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVNLLLSKW-MKELEKIFYGNIVAFDAALLPEAK 208
                     +Y+      DVE R    G++    K  MK + + FY  +  +D  +L +  
Sbjct:   152 GRAGKYMCRYIVHSMWEDVEQRSKIMGIDAHQRKESMKVMTETFYAALFGYDEGILSD-- 209

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKE-AMFSGNFMFT 267
                L   IWRNIF+     + +D   R ++ M  YVR+++  +   D E  + +G   + 
Sbjct:   210 DCVLAAAIWRNIFN----RQCEDP--RQLEMMVEYVRKQMQFIDALDGEDLLLTGEVKWR 263

Query:   268 PL 269
             PL
Sbjct:   264 PL 265

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NVA1 UQCC "Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 46/182 (25%), Positives = 77/182 (42%)

Query:    90 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRXXXX 149
             L YSK    I    + Y   V + D    +    +  TF   F + +LH+W CL R    
Sbjct:   106 LKYSKWKIKIAALRM-YTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 164

Query:   150 XXXXXXXXQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 208
                     + +      DV+ R    GVN  +L K M  +   FY  I+ +D  +L +  
Sbjct:   165 GRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKKNMILMTNHFYAAILGYDEGILSD-- 222

Query:   209 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 267
                L   +WR  F+     K +D   R ++ +  YVR+++  L S+  ++ + +G   + 
Sbjct:   223 DHGLAAALWRTFFN----RKCEDP--RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWR 276

Query:   268 PL 269
             PL
Sbjct:   277 PL 278

GO:0005739 "mitochondrion" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

CGD|CAL0006092 orf19.5515 [Candida albicans (taxid:5476)]

 Score = 131 (51.2 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 40/156 (25%), Positives = 77/156 (49%)

Query:   119 YDVFNLEKTFRMTFSLLVLHMWFC-LRRXXXXXXXXXXXXQYLYE-IYNHDVEMRVS-KA 175
             Y+   L K+F     + +LH W   +R             Q L + I+N D++ R+S + 
Sbjct:   140 YETLRLPKSFSQQVQITILHYWILSVRMRALPFKYSKEYQQKLVDRIFN-DLDYRMSTEL 198

Query:   176 GV--NLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 233
             G+  N  +  ++K+      G ++++D  L+ +     L + +WRN+F+ +     ++  
Sbjct:   199 GIKSNRTIEGYLKDYHTQLLGCVLSYDEGLMTD--DITLASALWRNVFNAN-----ENVD 251

Query:   234 VRAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 268
             +R V+A+  YVR ++  L+ +TD+   F G F F P
Sbjct:   252 MRHVEALLVYVRSQLYVLNKMTDRAFGF-GKFKFVP 286

GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IEA

GO:0070131 "positive regulation of mitochondrial translation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IEA

SGD|S000006136 CBP3 "Mitochondrial protein required for assembly of cytochrome bc1 complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 40/155 (25%), Positives = 67/155 (43%)

Query:   119 YDVFNLEKTFRMTFSLLVLHMWFC-LRRXXXXXXXXXXXXQYLYEIYNHDVEMRV---SK 174
             Y+   L +TF   F + VLH W   +R             Q L +    D+E+R+    K
Sbjct:   144 YEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEMK 203

Query:   175 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 234
                  +  +++K+      G I A+D     +     L   +WRN+F   G  K  D   
Sbjct:   204 VNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV- 257

Query:   235 RAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 268
               ++++ RY+  ++  LS L+D+E   +G F F P
Sbjct:   258 -HLESVVRYIYSQLYVLSRLSDRE-FATGKFKFVP 290

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032592 "integral to mitochondrial membrane" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0070131 "positive regulation of mitochondrial translation" evidence=IMP

GO:0043022 "ribosome binding" evidence=IDA;IPI

GO:0005761 "mitochondrial ribosome" evidence=IDA

GO:0034551 "mitochondrial respiratory chain complex III assembly" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam03981	139	pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C	8e-37
COG5452	180	COG5452, COG5452, Uncharacterized conserved protei	2e-15

>gnl|CDD|217828 pfam03981, Ubiq_cyt_C_chap, Ubiquinol-cytochrome C chaperone

 Score =  127 bits (321), Expect = 8e-37
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 10/148 (6%)

Query: 120 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGV-N 178
           +   +  TF   F + VLH+W  LRRL+ EG EG EL Q L++ +  DV+ R+ + GV +
Sbjct: 1   EALGVPDTFNGRFQMTVLHVWLLLRRLRAEGPEGKELEQELFDAFFEDVDARLREEGVGD 60

Query: 179 LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQ 238
           L + K MK+L + FYG ++A+D AL   +    L   +WRN++               + 
Sbjct: 61  LSVPKRMKKLAEAFYGRLLAYDEALG--SDDAALAAALWRNLY-------KGVVDPEKLA 111

Query: 239 AMTRYVRREVSCLSLTDKEAMFSGNFMF 266
            +  YVR +++ L     EA+  G F F
Sbjct: 112 GLVGYVRAQLAHLDALSDEALLVGGFTF 139

Length = 139

>gnl|CDD|227739 COG5452, COG5452, Uncharacterized conserved protein [Function unknown]

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 17/184 (9%)

Query: 88  LMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLK 147
           L LF  K+  ++     +Y  +V+   +PA Y    +  T    F +L LHM     RLK
Sbjct: 3   LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLK 62

Query: 148 EEGKEGVELGQYLYEIYNHDV-----EMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAA 202
            EG+   E+ Q + + +  DV     E+ +   GV     K MK+L  +FYG + A+DAA
Sbjct: 63  GEGEAAQEIAQEIVDAFFKDVDHSLRELGIGDQGV----PKRMKKLAGMFYGRLEAYDAA 118

Query: 203 LLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSG 262
            L       L   + RNI  D     P+ A       +  YV +    L+   +EA+ +G
Sbjct: 119 -LDGNDATALAAALARNIRPDVEDW-PEAA------GLATYVLKVRDALAAQPEEALATG 170

Query: 263 NFMF 266
           +  +
Sbjct: 171 DLTW 174

Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG2873	284	consensus Ubiquinol cytochrome c reductase assembl	100.0
COG5452	180	Uncharacterized conserved protein [Function unknow	100.0
PF03981	141	Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone	100.0

>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]

Probab=100.00  E-value=8.9e-53  Score=382.25  Aligned_cols=211  Identities=46%  Similarity=0.764  Sum_probs=193.4

Q ss_pred             cccccccccCCccccccCCCCCCCCCcchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcCChhhHhhcCCCCChh
Q 023635           50 VSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFR  129 (279)
Q Consensus        50 ~~~~~~~~~kp~s~~~~~~s~~~~~e~~~~g~~~~~~kl~g~~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~  129 (279)
                      +++++++|++|||++...+++.++-||...|+++++....-+|...+    ++.++|..|+++.+.+.||++|+|||||+
T Consensus        63 ~~~d~~k~~~P~~~~~~~~~~~ri~~~d~~gf~~~~~~~s~~y~~~~----as~~~y~~~~~~~df~~fy~~f~Lp~TF~  138 (284)
T KOG2873|consen   63 VNLDSMKWSPPCSLAAKGGLPLRIDEPDKVGFRRFILTGSMKYKIQS----ASIQIYKDCIAQVDFEAFYEDFNLPDTFS  138 (284)
T ss_pred             ccccccccCCCcchhhccCceeeeccccccceeeccchhHHHHHHHH----HHHHHHhhhhhhccHHHHHHHcCCchHHH
Confidence            48899999999999999999999999999999998887777665443    45569999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHHHHHHHHHHhc-Cc-hhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023635          130 MTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPE  206 (279)
Q Consensus       130 ~rF~~~~LHvWLll~RLr~eg~-~G~~l~Q~L~D~f~~Dve~rlRe~G-V~-~~v~K~mK~l~~~fyG~~~aYDeaL~~~  206 (279)
                      +||++|+||+|||++|+|+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++
T Consensus       139 sWf~iT~LH~W~ll~Rl~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d  218 (284)
T KOG2873|consen  139 SWFQITVLHVWLLLMRLKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD  218 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            9999999999999999999997 8999999999999999999999999 88 4556699999999999999999999987


Q ss_pred             CChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhccc-cccCCCCC
Q 023635          207 AKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGN-FMFTPLEN  271 (279)
Q Consensus       207 d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRrql~~L~~~~~e~ll~G~-~~f~~~~~  271 (279)
                        |.+||.|||||+|+++++     +|+.+++.+|+|||+|+..|+.+++++++.|. +.|.++.+
T Consensus       219 --D~vLA~alWRnlF~~r~~-----~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~~  277 (284)
T KOG2873|consen  219 --DRVLATALWRNLFSGRGN-----VDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQS  277 (284)
T ss_pred             --chHHHHHHHHHHhCCCCC-----cCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCCC
Confidence              689999999999999863     46789999999999999999999999987665 99999973

>COG5452 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-41  Score=284.07  Aligned_cols=175  Identities=26%  Similarity=0.420  Sum_probs=161.2

Q ss_pred             hhhhccCc-hhhhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Q 023635           89 MLFYSKQS-KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD  167 (279)
Q Consensus        89 ~g~~sk~s-~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~D  167 (279)
                      ++.|.|++ .+...+.++|..+|+++|+|.||.++|||||..|||+|+.||+.|+++|+|.+|+.+..++|+|+|.||.|
T Consensus         3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d   82 (180)
T COG5452           3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD   82 (180)
T ss_pred             hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence            45566777 45567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023635          168 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR  246 (279)
Q Consensus       168 ve~rlRe~GV~-~~v~K~mK~l~~~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRr  246 (279)
                      ||+++||+||+ ..|+|+||+|..+||||+-+||.||...| -.+|++||-||++.+.++       +.....|+.||..
T Consensus        83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~d-~~alaaal~Rn~~pd~~~-------~p~a~~La~yv~~  154 (180)
T COG5452          83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGND-ATALAAALARNIRPDVED-------WPEAAGLATYVLK  154 (180)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHhccccccc-------cchhHHHHHHHHH
Confidence            99999999998 99999999999999999999999998764 689999999999976553       3467899999999


Q ss_pred             HHHhccCCCHhhhhccccccCCCCC
Q 023635          247 EVSCLSLTDKEAMFSGNFMFTPLEN  271 (279)
Q Consensus       247 ql~~L~~~~~e~ll~G~~~f~~~~~  271 (279)
                      .-.+|..+|+|.|.+|.+.||.+..
T Consensus       155 ~~~~Laaq~~eal~~G~~t~p~p~g  179 (180)
T COG5452         155 VRDALAAQPEEALATGDLTWPLPDG  179 (180)
T ss_pred             HHHHHHcCcHHHHHhCceeecCCCC
Confidence            9999999999999999999998753

>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase

Probab=100.00  E-value=4.1e-38  Score=262.66  Aligned_cols=140  Identities=36%  Similarity=0.642  Sum_probs=132.2

Q ss_pred             hhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHH
Q 023635          120 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA  198 (279)
Q Consensus       120 ~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~Dve~rlRe~GV~-~~v~K~mK~l~~~fyG~~~a  198 (279)
                      ++||+||||++||+++.||+||+++|||+++++|+.+.|.|||.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus         1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a   80 (141)
T PF03981_consen    1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA   80 (141)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999998899999999999999999999999997 88899999999999999999


Q ss_pred             HHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhcccccc
Q 023635          199 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMF  266 (279)
Q Consensus       199 YDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRrql~~L~~~~~e~ll~G~~~f  266 (279)
                      ||+|+..+  +.+||+|||||+|.+..+     .++.+++.|++|||+++.+|+.+|.++++.|.+.|
T Consensus        81 yd~al~~~--~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~  141 (141)
T PF03981_consen   81 YDEALGSD--DAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF  141 (141)
T ss_pred             HHHHhccC--HHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence            99999873  899999999999998732     24679999999999999999999999999999987

It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 29/243 (11%), Positives = 71/243 (29%), Gaps = 48/243 (19%)

Query: 5   W-----CRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEPAPRPTKQPVSLDKMFWSK 59
           W     C +  ++  +            ++   T+ +              +  +     
Sbjct: 186 WLNLKNCNSPETV--LEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 60  ---PASLALALDSPLRVDEPKYEGIKRFILKL-MLFYSKQSKSIRGANVIYKRVVSQVDK 115
                 L L L +   V   K      F L   +L  ++  +     +      +S    
Sbjct: 241 KPYENCL-LVLLN---VQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 116 PAIYDVFNLEKTFRMTFSLLVLHM-WFCLRR------------LKEEGKEGVELGQYLYE 162
                    ++    +  L  L      L R            + E  ++G+      ++
Sbjct: 295 S---MTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WK 348

Query: 163 IYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAF-DAALLPEAKQDELQNVIWRNIF 221
             N D    + ++ +N+L     +++    +  +  F  +A +P      L ++IW ++ 
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAHIPT----ILLSLIWFDVI 400

Query: 222 SDD 224
             D
Sbjct: 401 KSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00